TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.006E19F020311.3.1
(789 letters)
Database: Triticum_nucl_with_EST.fasta
636,343 sequences; 367,240,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ888641.1|AJ888641 AJ888641 Triticum aestivum cv. Fidel... 166 3e-040
>gb|AJ888641.1|AJ888641 AJ888641 Triticum aestivum cv. Fidel leaf Triticum aestivum cDNA
clone OA_a3D11, mRNA sequence
Length = 521
Score = 166 bits (357), Expect = 3e-040
Identities = 67/102 (65%), Positives = 79/102 (77%)
Frame = +2 / -1
Query: 482 MLTYLVYEKQQKLRIMMKMHGLKDGPYWLISYSYFLALSIVYMLFFMIFGSLIGLNFFRV 661
+LTYLVYEKQQKL+IMMKMHGLKDGPYW+I+Y+YF ALS VYML F+IFGS+IGL FF
Sbjct: 521 VLTYLVYEKQQKLKIMMKMHGLKDGPYWMITYTYFFALSAVYMLLFIIFGSVIGLRFFTA 342
Query: 662 NEYSIQAVFFFVCINLQIXXXXXXXXXXXXGKMATGMGYMYV 787
N YSIQ VF+F+ INLQI K+AT +GY+YV
Sbjct: 341 NNYSIQIVFYFIYINLQIALAFFAASFFSSVKIATVVGYIYV 216
Score = 125 bits (267), Expect = 7e-028
Identities = 54/100 (54%), Positives = 69/100 (69%)
Frame = -3 / +3
Query: 787 YIHVPHPCGHLARQKERCHKKCKCNLQIYTDEEKNSLYAIFIYSEKIETNQGAKNHKE*H 608
YI+V + CG +KER +KC+CNLQIY DE +N+L A+ I E+ +T GAKN K *H
Sbjct: 216 YINVTNHCGDFD*RKERRCEKCECNLQIYVDEVENNLNAVIICCEEAQTYHGAKNDK**H 395
Query: 607 IDD**SKEIRIRYQPVRPILQTVHFHHNPXXXXXLIHQIC 488
ID **SKE+ + Y PVR +LQT+H HHN LIH+IC
Sbjct: 396 IDS**SKEVSVSYHPVRAVLQTMHLHHNFQLLLFLIHEIC 515
Score = 109 bits (232), Expect = 5e-023
Identities = 50/101 (49%), Positives = 64/101 (63%)
Frame = +1 / -3
Query: 487 DISGV*EAAEAKDYDENARSEGWALLADILFLFPCSINRLYVILYDFWLLDWSQFFQSK* 666
+IS V*E +A++YDE+A EG LL D L L CSI+ LY +Y FWL D S SK*
Sbjct: 516 NISRV*ETTKAENYDEDAWFEGRPLLDDNLHLLLCSISCLYATIYHFWLRDRSALLHSK* 337
Query: 667 I*HTSCFFLRLYKFADCTCIFCGIFLFVWQDGHRDGVHVCI 789
+ H+ CF L L+K ADCT IF + LF Q+ H +H+CI
Sbjct: 336 LQHSDCFLLHLHKSADCTRIFRSVVLFFSQNRHSGWLHLCI 214
Database: Triticum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 3:01 PM
Number of letters in database: 367,240,239
Number of sequences in database: 636,343
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 735,560,531
Number of Sequences: 636343
Number of extensions: 10237415
Number of successful extensions: 66022
Number of sequences better than 1.0e-020: 1
length of database: 122,413,413
effective HSP length: 53
effective length of database: 88,687,234
effective search space used: 18535631906
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)