TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCA17a05.yg.2.1
(548 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN127712.1|CN127712 RHOH1_24_D05.g3_A002 Acid- and alkal... 220 2e-059
gb|BF656435.1|BF656435 FM1_45_G12.g2_A003 Floral-Induced Me... 171 5e-042
gb|BG049824.1|BG049824 FM1_66_C11.g1_A003 Floral-Induced Me... 171 5e-042
gb|BI098036.1|BI098036 IP1_31_C06.g1_A002 Immature pannicle... 171 5e-042
gb|AF466200.2| Sorghum bicolor putative protein kinase gene... 149 1e-037
gb|CW098046.1|CW098046 104_464_11002794_148_34367_073 Sorgh... 149 1e-037
gb|CW486926.1|CW486926 fsbb001f252h17k0 Sorghum methylation... 149 1e-037
gb|CW044336.1|CW044336 104_280_10508891_114_30268 Sorghum m... 149 3e-036
gb|CW173783.1|CW173783 104_585_11157034_116_36552_037 Sorgh... 149 2e-035
gb|CF484228.1|CF484228 POL1_4_A06.b1_A002 Pollen Sorghum bi... 143 2e-033
gb|CF488926.1|CF488926 POL1_53_C07.b1_A002 Pollen Sorghum b... 143 2e-033
gb|CW486925.1|CW486925 fsbb001f252h17f0 Sorghum methylation... 127 7e-031
gb|BZ350980.1|BZ350980 ht64b02.g1 WGS-SbicolorF (JM107 adap... 132 5e-030
gb|CF072395.1|CF072395 FE1_2_F08.g1_A002 Iron-deficient see... 90 8e-029
gb|CW162268.1|CW162268 104_569_11150854_148_36442_087 Sorgh... 91 9e-024
gb|CL188319.1|CL188319 104_404_10901510_116_32449_053 Sorgh... 91 9e-024
gb|CD222290.1|CD222290 CCC1_21_D09.b1_A007 Callus culture/c... 83 9e-024
gb|AW285397.1|AW285397 LG1_244_H02.g1_A002 Light Grown 1 (L... 109 4e-023
gb|BZ347771.1|BZ347771 ho34d08.g2 WGS-SbicolorF (JM107 adap... 91 4e-022
gb|BG050366.1|BG050366 FM1_53_B07.g1_A003 Floral-Induced Me... 105 4e-022
>gb|CN127712.1|CN127712 RHOH1_24_D05.g3_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_24_D05_A002 5', mRNA sequence
Length = 844
Score = 220 bits (474), Expect(3) = 2e-059
Identities = 86/97 (88%), Positives = 89/97 (91%)
Frame = -3 / +2
Query: 546 VISAGIARDVASRHTNHSLRLFKMEDVSMGMWVEDYNASAPVQYVHSWRFCQFGCVDNYF 367
VISA IARD+ASRHTNHSLRLFKMEDVSMGMWVED+NASAPVQYVHSWRFCQFGCVD Y
Sbjct: 305 VISADIARDIASRHTNHSLRLFKMEDVSMGMWVEDFNASAPVQYVHSWRFCQFGCVDYYL 484
Query: 366 TAHYQSPRQMLCLWEKLSAGRAHCCNYR*HEAPRGEM 256
TAHYQSP MLCLWEKLSAGR CCNY *HEAPRGE+
Sbjct: 485 TAHYQSPWHMLCLWEKLSAGRRDCCNYI*HEAPRGEV 595
Score = 199 bits (430), Expect(2) = 4e-051
Identities = 85/96 (88%), Positives = 87/96 (90%)
Frame = +2 / -2
Query: 260 SPLGASCYL*LQQCALPADSFSQRHSICLGDW*CAVK*LSTQPNWQNLQLWTYCTGALAL 439
SPLGASCY+*LQQ PADSFSQRHS+C GDW*CAVK* STQPNWQNLQLWTYCTGALAL
Sbjct: 591 SPLGASCYM*LQQSRRPADSFSQRHSMCQGDW*CAVK**STQPNWQNLQLWTYCTGALAL 412
Query: 440 *SSTHMPMLTSSILNSRREWFVCRDATSLAMPAEIT 547
SSTHMPMLTSSILNSRRE FVCRDA SLAM AEIT
Sbjct: 411 KSSTHMPMLTSSILNSRRE*FVCRDAMSLAMSAEIT 304
Score = 154 bits (331), Expect = 9e-037
Identities = 61/98 (62%), Positives = 65/98 (66%)
Frame = -1 / +3
Query: 548 TLSRPALRET*HPGIQTTPYGCSRWRT*AWACGWRTTTPAPPCSMXXXXXXXXXXXXXXX 369
TLSRP RET*HPGIQ TPYGCSRWR *AWACGWRT+T APPCS
Sbjct: 303 TLSRPTSRET*HPGIQITPYGCSRWRM*AWACGWRTSTRAPPCSTSTAGGSASSAAWITT 482
Query: 368 XXXXXSPPGRCCASGRSCQRGERTAVTTDNMRPPGGKW 255
SPPG CCASGR+CQ+G AVTT NMR PG +W
Sbjct: 483 *RRTTSPPGTCCASGRNCQQGAGIAVTTYNMRLPGERW 596
Score = 144 bits (308), Expect = 1e-033
Identities = 70/98 (71%), Positives = 71/98 (72%)
Frame = -2 / +1
Query: 547 RYLGRHCERRSIPAYKPLPTAVQDXXXXXXXXXXGLQRQRPRAVCPQLEVLPVRLRGQLL 368
RYLGRH ER SIPAYK LPTAVQD GLQR+RPRAV PQLEVLPVRLRG LL
Sbjct: 304 RYLGRHRERHSIPAYKSLPTAVQDGGCEHGHVGGGLQRERPRAVRPQLEVLPVRLRGLLL 483
Query: 367 HGALPVPQADAVPLGEAVSGESALL*LQIT*GPQGGNG 254
GALPVP A AVPLGE VS LL*L IT*G QG G
Sbjct: 484 DGALPVPLAHAVPLGETVSRAPGLL*LHIT*GSQGRGG 597
Score = 103 bits (220), Expect(2) = 1e-031
Identities = 44/56 (78%), Positives = 46/56 (82%)
Frame = +3 / -3
Query: 264 PWGPHVICSYSSALSPLTASPRGTASAWGTGSAP*SSCPRSRTGRTSSCGHTARGR 431
PW PHVICSYS+ + LT SPRGTA A GTGSAP SS PRSRTGRTSSCG TARGR
Sbjct: 587 PWEPHVICSYSNPGALLTVSPRGTACARGTGSAPSSSNPRSRTGRTSSCGRTARGR 420
Score = 53.8 bits (111), Expect(2) = 1e-031
Identities = 19/22 (86%), Positives = 21/22 (95%)
Frame = +1 / -1
Query: 481 EQP*GVVCMPGCYVSRNAGRDN 546
EQP*GV+CMPGCYVSR+ GRDN
Sbjct: 370 EQP*GVICMPGCYVSRDVGRDN 305
Score = 26.7 bits (52), Expect(3) = 2e-059
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -2 / +2
Query: 97 CYQLLLHLQFF 65
C QLLLHLQFF
Sbjct: 740 CDQLLLHLQFF 772
Score = 22.6 bits (43), Expect(2) = 4e-051
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2 / -1
Query: 65 EELKMKQKLVAPLSRIPSI*EPKNM 139
EELKM+Q+L+ S EP N+
Sbjct: 772 EELKMQQQLITLSSIHSMYKEPNNI 698
Score = 22.1 bits (42), Expect(3) = 2e-059
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = -3 / +2
Query: 174 DD*CQKPSSR 145
DD* QKPSSR
Sbjct: 656 DD*LQKPSSR 685
>gb|BF656435.1|BF656435 FM1_45_G12.g2_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 633
Score = 171 bits (369), Expect = 5e-042
Identities = 64/89 (71%), Positives = 74/89 (83%)
Frame = -3 / +1
Query: 546 VISAGIARDVASRHTNHSLRLFKMEDVSMGMWVEDYNASAPVQYVHSWRFCQFGCVDNYF 367
VIS IA+ + S+H N SLRLFKMEDVSMG+WVE +NA+ PVQY HSW FCQ+GCV NY+
Sbjct: 16 VISGDIAKFIVSQHANQSLRLFKMEDVSMGLWVEKFNATKPVQYSHSWNFCQYGCVFNYY 195
Query: 366 TAHYQSPRQMLCLWEKLSAGRAHCCNYR* 280
TAHYQSPRQMLCLW+KL G+ CCNYR*
Sbjct: 196 TAHYQSPRQMLCLWDKLIRGQPSCCNYR* 282
Score = 106 bits (227), Expect = 2e-022
Identities = 52/89 (58%), Positives = 59/89 (66%)
Frame = +2 / -2
Query: 281 YL*LQQCALPADSFSQRHSICLGDW*CAVK*LSTQPNWQNLQLWTYCTGALAL*SSTHMP 460
YL*LQQ P + S +HSICLGD * AV *L+TQP WQ QLW Y TG +AL STH P
Sbjct: 281 YL*LQQDG*PRINLSHKHSICLGD**WAV**LNTQPYWQKFQLWEYWTGFVALNFSTHRP 102
Query: 461 MLTSSILNSRREWFVCRDATSLAMPAEIT 547
+LTSSILNS + C D + AM EIT
Sbjct: 101 ILTSSILNSLKL*LACCDTMNFAMSPEIT 15
>gb|BG049824.1|BG049824 FM1_66_C11.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 618
Score = 171 bits (369), Expect = 5e-042
Identities = 64/89 (71%), Positives = 74/89 (83%)
Frame = -3 / +2
Query: 546 VISAGIARDVASRHTNHSLRLFKMEDVSMGMWVEDYNASAPVQYVHSWRFCQFGCVDNYF 367
VIS IA+ + S+H N SLRLFKMEDVSMG+WVE +NA+ PVQY HSW FCQ+GCV NY+
Sbjct: 2 VISGDIAKFIVSQHANQSLRLFKMEDVSMGLWVEKFNATKPVQYSHSWNFCQYGCVFNYY 181
Query: 366 TAHYQSPRQMLCLWEKLSAGRAHCCNYR* 280
TAHYQSPRQMLCLW+KL G+ CCNYR*
Sbjct: 182 TAHYQSPRQMLCLWDKLIRGQPSCCNYR* 268
Score = 106 bits (227), Expect = 2e-022
Identities = 52/89 (58%), Positives = 59/89 (66%)
Frame = +2 / -1
Query: 281 YL*LQQCALPADSFSQRHSICLGDW*CAVK*LSTQPNWQNLQLWTYCTGALAL*SSTHMP 460
YL*LQQ P + S +HSICLGD * AV *L+TQP WQ QLW Y TG +AL STH P
Sbjct: 267 YL*LQQDG*PRINLSHKHSICLGD**WAV**LNTQPYWQKFQLWEYWTGFVALNFSTHRP 88
Query: 461 MLTSSILNSRREWFVCRDATSLAMPAEIT 547
+LTSSILNS + C D + AM EIT
Sbjct: 87 ILTSSILNSLKL*LACCDTMNFAMSPEIT 1
>gb|BI098036.1|BI098036 IP1_31_C06.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 676
Score = 171 bits (369), Expect = 5e-042
Identities = 64/89 (71%), Positives = 74/89 (83%)
Frame = -3 / +2
Query: 546 VISAGIARDVASRHTNHSLRLFKMEDVSMGMWVEDYNASAPVQYVHSWRFCQFGCVDNYF 367
VIS IA+ + S+H N SLRLFKMEDVSMG+WVE +NA+ PVQY HSW FCQ+GCV NY+
Sbjct: 29 VISGDIAKFIVSQHANQSLRLFKMEDVSMGLWVEKFNATKPVQYSHSWNFCQYGCVFNYY 208
Query: 366 TAHYQSPRQMLCLWEKLSAGRAHCCNYR* 280
TAHYQSPRQMLCLW+KL G+ CCNYR*
Sbjct: 209 TAHYQSPRQMLCLWDKLIRGQPSCCNYR* 295
Score = 106 bits (227), Expect = 2e-022
Identities = 52/89 (58%), Positives = 59/89 (66%)
Frame = +2 / -2
Query: 281 YL*LQQCALPADSFSQRHSICLGDW*CAVK*LSTQPNWQNLQLWTYCTGALAL*SSTHMP 460
YL*LQQ P + S +HSICLGD * AV *L+TQP WQ QLW Y TG +AL STH P
Sbjct: 294 YL*LQQDG*PRINLSHKHSICLGD**WAV**LNTQPYWQKFQLWEYWTGFVALNFSTHRP 115
Query: 461 MLTSSILNSRREWFVCRDATSLAMPAEIT 547
+LTSSILNS + C D + AM EIT
Sbjct: 114 ILTSSILNSLKL*LACCDTMNFAMSPEIT 28
>gb|AF466200.2| Sorghum bicolor putative protein kinase gene, partial cds; putative Cf-2,
fertilization-independent endosperm proteins, hypothetical
protein, putative non-LTR retroelement reverse
transcriptase, OCL5 protein, tryptophan synthase
beta-subunit, hypothetical proteins, putative AP
endonuclease, putative RNA polymerase II complex component
SRB7, putative beta-1,3-glucanase, hypothetical protein,
TNP2-like protein, hypothetical protein, putative
phosphate/phosphoenolpyruvate translocator, putative
protein, hypothetical proteins, putative
galactosyltransferase family, hypothetical protein,
putative cytochrome P450 family, putative lipid transfer
protein, putative photoreceptor-interacting protein, and
hypothetical protein genes, complete cds; and hypothetical
protein gene, partial cds
Length = 202197
Score = 149 bits (321), Expect(2) = 1e-037
Identities = 54/71 (76%), Positives = 62/71 (87%)
Frame = -3 / +2
Query: 492 LRLFKMEDVSMGMWVEDYNASAPVQYVHSWRFCQFGCVDNYFTAHYQSPRQMLCLWEKLS 313
L+LFKMEDVSMG+WVE +NA+ PVQY HSW FCQ+GCV NY+TAHYQSPRQMLCLW+KL
Sbjct: 171119 LQLFKMEDVSMGLWVEKFNATKPVQYSHSWNFCQYGCVFNYYTAHYQSPRQMLCLWDKLI 171298
Query: 312 AGRAHCCNYR* 280
G+ CCNYR*
Sbjct: 171299 RGQPSCCNYR* 171331
Score = 27.6 bits (54), Expect(2) = 1e-037
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3 / +2
Query: 546 VISAGIARDVASRHTNHSLRL 484
VIS IA+ + S+H N SLR+
Sbjct: 170984 VISGDIAKFIVSQHANQSLRV 171046
>gb|CW098046.1|CW098046 104_464_11002794_148_34367_073 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11002794, DNA
sequence
Length = 660
Score = 149 bits (321), Expect(2) = 1e-037
Identities = 54/71 (76%), Positives = 62/71 (87%)
Frame = -3 / -2
Query: 492 LRLFKMEDVSMGMWVEDYNASAPVQYVHSWRFCQFGCVDNYFTAHYQSPRQMLCLWEKLS 313
L+LFKMEDVSMG+WVE +NA+ PVQY HSW FCQ+GCV NY+TAHYQSPRQMLCLW+KL
Sbjct: 263 LQLFKMEDVSMGLWVEKFNATKPVQYSHSWNFCQYGCVFNYYTAHYQSPRQMLCLWDKLI 84
Query: 312 AGRAHCCNYR* 280
G+ CCNYR*
Sbjct: 83 RGQPSCCNYR* 51
Score = 27.6 bits (54), Expect(2) = 1e-037
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3 / -2
Query: 546 VISAGIARDVASRHTNHSLRL 484
VIS IA+ + S+H N SLR+
Sbjct: 398 VISGDIAKFIVSQHANQSLRV 336
>gb|CW486926.1|CW486926 fsbb001f252h17k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f252h17, DNA
sequence
Length = 660
Score = 149 bits (321), Expect(2) = 1e-037
Identities = 54/71 (76%), Positives = 62/71 (87%)
Frame = -3 / -1
Query: 492 LRLFKMEDVSMGMWVEDYNASAPVQYVHSWRFCQFGCVDNYFTAHYQSPRQMLCLWEKLS 313
L+LFKMEDVSMG+WVE +NA+ PVQY HSW FCQ+GCV NY+TAHYQSPRQMLCLW+KL
Sbjct: 432 LQLFKMEDVSMGLWVEKFNATKPVQYSHSWNFCQYGCVFNYYTAHYQSPRQMLCLWDKLI 253
Query: 312 AGRAHCCNYR* 280
G+ CCNYR*
Sbjct: 252 RGQPSCCNYR* 220
Score = 27.6 bits (54), Expect(2) = 1e-037
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3 / -1
Query: 546 VISAGIARDVASRHTNHSLRL 484
VIS IA+ + S+H N SLR+
Sbjct: 567 VISGDIAKFIVSQHANQSLRV 505
>gb|CW044336.1|CW044336 104_280_10508891_114_30268 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10508891, DNA
sequence
Length = 554
Score = 149 bits (321), Expect(2) = 3e-036
Identities = 54/71 (76%), Positives = 62/71 (87%)
Frame = -3 / -3
Query: 492 LRLFKMEDVSMGMWVEDYNASAPVQYVHSWRFCQFGCVDNYFTAHYQSPRQMLCLWEKLS 313
L+LFKMEDVSMG+WVE +NA+ PVQY HSW FCQ+GCV NY+TAHYQSPRQMLCLW+KL
Sbjct: 429 LQLFKMEDVSMGLWVEKFNATKPVQYSHSWNFCQYGCVFNYYTAHYQSPRQMLCLWDKLI 250
Query: 312 AGRAHCCNYR* 280
G+ CCNYR*
Sbjct: 249 RGQPSCCNYR* 217
Score = 22.6 bits (43), Expect(2) = 3e-036
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -3 / -1
Query: 531 IARDVASRHTNHSLRL 484
IA+ + S+H N SLR+
Sbjct: 548 IAKFIVSQHANQSLRV 501
>gb|CW173783.1|CW173783 104_585_11157034_116_36552_037 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11157034, DNA
sequence
Length = 642
Score = 149 bits (321), Expect = 2e-035
Identities = 54/71 (76%), Positives = 62/71 (87%)
Frame = -3 / -3
Query: 492 LRLFKMEDVSMGMWVEDYNASAPVQYVHSWRFCQFGCVDNYFTAHYQSPRQMLCLWEKLS 313
L+LFKMEDVSMG+WVE +NA+ PVQY HSW FCQ+GCV NY+TAHYQSPRQMLCLW+KL
Sbjct: 547 LQLFKMEDVSMGLWVEKFNATKPVQYSHSWNFCQYGCVFNYYTAHYQSPRQMLCLWDKLI 368
Query: 312 AGRAHCCNYR* 280
G+ CCNYR*
Sbjct: 367 RGQPSCCNYR* 335
>gb|CF484228.1|CF484228 POL1_4_A06.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_4_A06_A002 3', mRNA sequence
Length = 661
Score = 143 bits (307), Expect = 2e-033
Identities = 53/89 (59%), Positives = 67/89 (75%)
Frame = -3 / +2
Query: 546 VISAGIARDVASRHTNHSLRLFKMEDVSMGMWVEDYNASAPVQYVHSWRFCQFGCVDNYF 367
VIS+ IA + S L+LFKMEDVS+G+WVE +N + PV+Y+HS +FC FGCV +Y+
Sbjct: 53 VISSDIAEFIMSEFMKQKLKLFKMEDVSLGLWVEQFNRTRPVEYIHSGKFCPFGCVADYY 232
Query: 366 TAHYQSPRQMLCLWEKLSAGRAHCCNYR* 280
TAHYQSPR MLC+W+KL GR CCN R*
Sbjct: 233 TAHYQSPRLMLCMWQKLLEGRPDCCNMR* 319
>gb|CF488926.1|CF488926 POL1_53_C07.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_53_C07_A002 3', mRNA sequence
Length = 760
Score = 143 bits (307), Expect = 2e-033
Identities = 53/89 (59%), Positives = 67/89 (75%)
Frame = -3 / +1
Query: 546 VISAGIARDVASRHTNHSLRLFKMEDVSMGMWVEDYNASAPVQYVHSWRFCQFGCVDNYF 367
VIS+ IA + S L+LFKMEDVS+G+WVE +N + PV+Y+HS +FC FGCV +Y+
Sbjct: 346 VISSDIAEFIMSEFMKQKLKLFKMEDVSLGLWVEQFNRTRPVEYIHSGKFCPFGCVADYY 525
Query: 366 TAHYQSPRQMLCLWEKLSAGRAHCCNYR* 280
TAHYQSPR MLC+W+KL GR CCN R*
Sbjct: 526 TAHYQSPRLMLCMWQKLLEGRPDCCNMR* 612
>gb|CW486925.1|CW486925 fsbb001f252h17f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f252h17, DNA
sequence
Length = 703
Score = 127 bits (271), Expect(2) = 7e-031
Identities = 45/56 (80%), Positives = 51/56 (91%)
Frame = -3 / +2
Query: 492 LRLFKMEDVSMGMWVEDYNASAPVQYVHSWRFCQFGCVDNYFTAHYQSPRQMLCLW 325
L+LFKMEDVSMG+WVE +NA+ PVQY HSW FCQ+GCV NY+TAHYQSPRQMLCLW
Sbjct: 536 LQLFKMEDVSMGLWVEKFNATKPVQYSHSWNFCQYGCVFNYYTAHYQSPRQMLCLW 703
Score = 27.6 bits (54), Expect(2) = 7e-031
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3 / +2
Query: 546 VISAGIARDVASRHTNHSLRL 484
VIS IA+ + S+H N SLR+
Sbjct: 401 VISGDIAKFIVSQHANQSLRV 463
>gb|BZ350980.1|BZ350980 ht64b02.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ht64b02 5', DNA sequence
Length = 631
Score = 132 bits (282), Expect = 5e-030
Identities = 46/71 (64%), Positives = 59/71 (83%)
Frame = -3 / +3
Query: 492 LRLFKMEDVSMGMWVEDYNASAPVQYVHSWRFCQFGCVDNYFTAHYQSPRQMLCLWEKLS 313
++LFKMEDVS+G+WVE +N + PV+Y+HS +FC FGCV +Y+TAHYQSPR MLC+W+KL
Sbjct: 348 VQLFKMEDVSLGLWVEQFNRTRPVEYIHSGKFCPFGCVADYYTAHYQSPRLMLCMWQKLL 527
Query: 312 AGRAHCCNYR* 280
GR CCN R*
Sbjct: 528 EGRPDCCNMR* 560
>gb|CF072395.1|CF072395 FE1_2_F08.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_2_F08_A002 5', mRNA sequence
Length = 658
Score = 90.0 bits (190), Expect(2) = 8e-029
Identities = 32/50 (64%), Positives = 37/50 (74%)
Frame = -3 / -3
Query: 429 APVQYVHSWRFCQFGCVDNYFTAHYQSPRQMLCLWEKLSAGRAHCCNYR* 280
+PV+Y+H RF Q GC D YFTAHYQSP+ M+CLW KL AG CCN R*
Sbjct: 518 SPVEYLHDLRFYQPGCFDGYFTAHYQSPQHMICLWRKLQAGSTQCCNVR* 369
Score = 57.9 bits (120), Expect(2) = 8e-029
Identities = 23/39 (58%), Positives = 30/39 (76%)
Frame = -3 / -3
Query: 546 VISAGIARDVASRHTNHSLRLFKMEDVSMGMWVEDYNAS 430
+IS+ IA+ + S N +LRLFKMEDVSMGMWVE +N +
Sbjct: 638 IISSDIAQYILSEFDNKTLRLFKMEDVSMGMWVEKFNTT 522
>gb|CW162268.1|CW162268 104_569_11150854_148_36442_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11150854, DNA
sequence
Length = 754
Score = 90.9 bits (192), Expect(2) = 9e-024
Identities = 35/54 (64%), Positives = 37/54 (68%)
Frame = -3 / +1
Query: 423 VQYVHSWRFCQFGCVDNYFTAHYQSPRQMLCLWEKLSAGRAHCCNYR*HEAPRG 262
V YVHS FCQ GCV+ Y TAHYQSP QM+CLWEKL G CCN R* P G
Sbjct: 295 VAYVHSAGFCQSGCVNGYLTAHYQSPAQMVCLWEKLRRGNTWCCNAR*PSIPLG 456
Score = 40.0 bits (81), Expect(2) = 9e-024
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = -3 / +1
Query: 489 RLFKMEDVSMGMWVEDYNAS 430
+LFKMEDVSMGMWV +N S
Sbjct: 220 QLFKMEDVSMGMWVGQFNLS 279
>gb|CL188319.1|CL188319 104_404_10901510_116_32449_053 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10901510, DNA
sequence
Length = 708
Score = 90.9 bits (192), Expect(2) = 9e-024
Identities = 35/54 (64%), Positives = 37/54 (68%)
Frame = -3 / +2
Query: 423 VQYVHSWRFCQFGCVDNYFTAHYQSPRQMLCLWEKLSAGRAHCCNYR*HEAPRG 262
V YVHS FCQ GCV+ Y TAHYQSP QM+CLWEKL G CCN R* P G
Sbjct: 269 VAYVHSAGFCQSGCVNGYLTAHYQSPAQMVCLWEKLRRGNTWCCNAR*PSIPLG 430
Score = 40.0 bits (81), Expect(2) = 9e-024
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = -3 / +2
Query: 489 RLFKMEDVSMGMWVEDYNAS 430
+LFKMEDVSMGMWV +N S
Sbjct: 194 QLFKMEDVSMGMWVGQFNLS 253
>gb|CD222290.1|CD222290 CCC1_21_D09.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_21_D09_A007 3', mRNA sequence
Length = 620
Score = 82.6 bits (174), Expect(2) = 9e-024
Identities = 30/49 (61%), Positives = 35/49 (71%)
Frame = -3 / +3
Query: 426 PVQYVHSWRFCQFGCVDNYFTAHYQSPRQMLCLWEKLSAGRAHCCNYR* 280
PV+ H RF Q GC + YFTAHYQSP+ M+CLW KL +G A CCN R*
Sbjct: 87 PVEIRHDVRFYQSGCYNGYFTAHYQSPQHMICLWRKLQSGSARCCNVR* 233
Score = 48.3 bits (99), Expect(2) = 9e-024
Identities = 18/22 (81%), Positives = 20/22 (90%)
Frame = -3 / +3
Query: 501 NHSLRLFKMEDVSMGMWVEDYN 436
N +LRLFKMEDVSMGMWVE +N
Sbjct: 9 NQTLRLFKMEDVSMGMWVEKFN 74
>gb|AW285397.1|AW285397 LG1_244_H02.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 522
Score = 109 bits (232), Expect = 4e-023
Identities = 38/49 (77%), Positives = 42/49 (85%)
Frame = -3 / +3
Query: 426 PVQYVHSWRFCQFGCVDNYFTAHYQSPRQMLCLWEKLSAGRAHCCNYR* 280
PVQY HSW FCQ+GCV NY+TAHYQSPRQMLCLW+KL G+ CCNYR*
Sbjct: 3 PVQYSHSWNFCQYGCVFNYYTAHYQSPRQMLCLWDKLIRGQPSCCNYR* 149
>gb|BZ347771.1|BZ347771 ho34d08.g2 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone ho34d08 5', DNA sequence
Length = 508
Score = 90.9 bits (192), Expect(2) = 4e-022
Identities = 35/54 (64%), Positives = 37/54 (68%)
Frame = -3 / -3
Query: 423 VQYVHSWRFCQFGCVDNYFTAHYQSPRQMLCLWEKLSAGRAHCCNYR*HEAPRG 262
V YVHS FCQ GCV+ Y TAHYQSP QM+CLWEKL G CCN R* P G
Sbjct: 200 VAYVHSAGFCQSGCVNGYLTAHYQSPAQMVCLWEKLRRGNTWCCNAR*PSIPLG 39
Score = 34.5 bits (69), Expect(2) = 4e-022
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -3 / -3
Query: 489 RLFKMEDVSMGMWVEDYNAS 430
+LFKM DVS GMWV +N S
Sbjct: 275 KLFKMGDVSRGMWVGQFNLS 216
>gb|BG050366.1|BG050366 FM1_53_B07.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 366
Score = 105 bits (225), Expect = 4e-022
Identities = 37/48 (77%), Positives = 41/48 (85%)
Frame = -3 / +1
Query: 423 VQYVHSWRFCQFGCVDNYFTAHYQSPRQMLCLWEKLSAGRAHCCNYR* 280
VQY HSW FCQ+GCV NY+TAHYQSPRQMLCLW+KL G+ CCNYR*
Sbjct: 4 VQYSHSWNFCQYGCVFNYYTAHYQSPRQMLCLWDKLIRGQPSCCNYR* 147
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 764,817,968
Number of Sequences: 832831
Number of extensions: 13080827
Number of successful extensions: 176542
Number of sequences better than 1.0e-020: 23
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 15434400177
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)