TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8635646.2.1
(573 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW677884.1|AW677884 WS1_11_E10.g1_A002 Water-stressed 1 ... 183 7e-076
gb|BE358024.1|BE358024 DG1_23_D04.g1_A002 Dark Grown 1 (DG1... 183 2e-069
gb|CW219751.1|CW219751 104_654_11196963_116_37145_014 Sorgh... 183 3e-063
gb|CW241319.1|CW241319 104_700_11218701_148_37542_089 Sorgh... 183 5e-049
gb|BE357948.1|BE357948 DG1_23_D04.b1_A002 Dark Grown 1 (DG1... 183 5e-049
gb|CW309100.1|CW309100 104_797_11469018_148_35726_067 Sorgh... 178 6e-048
gb|CW309099.1|CW309099 104_797_11469018_116_35722_067 Sorgh... 171 1e-042
gb|CW219752.1|CW219752 104_654_11196963_148_37146_014 Sorgh... 124 1e-027
>gb|AW677884.1|AW677884 WS1_11_E10.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA,
mRNA sequence
Length = 610
Score = 183 bits (394), Expect(2) = 2e-071
Identities = 83/115 (72%), Positives = 86/115 (74%)
Frame = -1 / -2
Query: 345 DTLRDRPCXXXXXXXXXXXKLTRQNQTSSSWSIMLGMPLLMGKQRLVSGQTREPSWT*TS 166
DTLRDRP KLT +QTSSSWSIMLGMPLLMGK RLVSGQTREPSWT TS
Sbjct: 399 DTLRDRP*RAGEQAKAARAKLTHTDQTSSSWSIMLGMPLLMGKHRLVSGQTREPSWTWTS 220
Query: 165 RSAWWMRRMALPSTSAAPSAKIXXXXXXXXXXXXXRPTARVAATSARQSILGRRP 1
RSAWWMRRMALPSTSAAPSAKI RP+ARVA+TSARQSILGRRP
Sbjct: 219 RSAWWMRRMALPSTSAAPSAKISSSGGCSSGRSSGRPSARVASTSARQSILGRRP 55
Score = 172 bits (371), Expect(3) = 7e-076
Identities = 74/82 (90%), Positives = 77/82 (93%)
Frame = +2 / +2
Query: 101 IFADGAADVEGSAIRRIHHALLEVHVQEGSLVCPDTSRCFPINKGIPNMMLHEDEV*FCR 280
IFA+GAADVEGSAIRRIHHALLEVHVQEGSLVCPDTSRCFPINKGIPNMMLHEDEV*
Sbjct: 155 IFAEGAADVEGSAIRRIHHALLEVHVQEGSLVCPDTSRCFPINKGIPNMMLHEDEV*SVC 334
Query: 281 VSFALASFARAPALHGLSRRVS 346
VSFALA+FA +PA HGLSRRVS
Sbjct: 335 VSFALAAFACSPARHGLSRRVS 400
Score = 108 bits (231), Expect(3) = 7e-076
Identities = 42/53 (79%), Positives = 45/53 (84%)
Frame = +3 / +2
Query: 366 SDCTCEVWIAALQIVPS*YDR*PCNTRNCRFVLLIWCTSCFVLNCLRIVCCPV 524
SDC CEVW A LQIV *YDR*PC+TRN RFVL+IWCTSCFVL C +IVCCPV
Sbjct: 425 SDCICEVWNAVLQIVAL*YDR*PCSTRNSRFVLVIWCTSCFVLYCGQIVCCPV 583
Score = 106 bits (227), Expect(2) = 2e-071
Identities = 44/54 (81%), Positives = 49/54 (90%)
Frame = -1 / -3
Query: 525 AQGNKQFADS*EQSMTCTKLTTRNGNSEYYTAIYHIMRAQSARLQSILHRYNLS 364
+QG+KQFA S EQSMTCTKL T+NGNSEYYTAIYHI+R QSARL SILHRYNL+
Sbjct: 584 SQGSKQFAHSKEQSMTCTKLPTQNGNSEYYTAIYHIIRPQSARLHSILHRYNLT 423
Score = 105 bits (225), Expect(4) = 1e-044
Identities = 42/53 (79%), Positives = 46/53 (86%)
Frame = -3 / -2
Query: 523 TGQQTIRRQLRTKHDVHQINNTKRQFRVLHGYLSYYEGTICKAAIHTSQVQSE 365
TGQQTI Q RTKHDVHQI NTKR+FRVLHGYLSYY+ TICK A HTSQ+QS+
Sbjct: 582 TGQQTICPQ*RTKHDVHQITNTKREFRVLHGYLSYYKATICKTAFHTSQIQSD 424
Score = 97.7 bits (207), Expect(2) = 3e-033
Identities = 43/54 (79%), Positives = 45/54 (83%)
Frame = -2 / -1
Query: 524 HRATNNSQTVKNKA*RAPN*QHETAIPSITRLSIIL*GHNLQGCNPYFTGTI*V 363
HRA NN TVKNKA*RAPN QH+T IPS TRLSIIL*GHNLQ C PYFT TI*+
Sbjct: 583 HRAANNLPTVKNKA*RAPNYQHKTGIPSTTRLSIIL*GHNLQDCIPYFTDTI*L 422
Score = 91.8 bits (194), Expect(2) = 4e-033
Identities = 39/53 (73%), Positives = 44/53 (83%)
Frame = +1 / +3
Query: 364 TQIVPVKYGLQPCRLCPHNMIDSRVILGIAVSCC*FGARHALFLTVCELFVAL 522
+QIV VKYG+Q CRL P+NMIDSRV+LGI V C *FGARHALF TV +LF AL
Sbjct: 423 SQIVSVKYGMQSCRLWPYNMIDSRVVLGIPVLCW*FGARHALFFTVGKLFAAL 581
Score = 88.6 bits (187), Expect(2) = 2e-028
Identities = 40/55 (72%), Positives = 43/55 (78%)
Frame = +2 / +1
Query: 359 FVLRLYL*SMDCSLADCALXXXXXAV*YSELPFRVVNLVHVMLCS*LSANCLLPC 523
+ +RLYL*SM+CSLADC L AV*YSE PF V NLVHVMLCS L ANCLLPC
Sbjct: 418 YSVRLYL*SMECSLADCGLII**IAV*YSEFPFCVGNLVHVMLCSLLWANCLLPC 582
Score = 70.7 bits (148), Expect(2) = 4e-033
Identities = 27/33 (81%), Positives = 28/33 (84%)
Frame = +1 / +1
Query: 247 DAPRGRGLILPCQFRPGLFCSRTCSTWSVAKGI 345
DAPRGRGLI CQFRPG FC TCS+WSVAKGI
Sbjct: 301 DAPRGRGLICVCQFRPGRFCLLTCSSWSVAKGI 399
Score = 67.5 bits (141), Expect(4) = 1e-044
Identities = 27/32 (84%), Positives = 29/32 (90%)
Frame = -2 / -3
Query: 344 IPFATDHVEQVREQKRPGRN*HGKIRPRPRGA 249
IPFATDH EQV +QKRPGRN*H +IRPRPRGA
Sbjct: 398 IPFATDHDEQVSKQKRPGRN*HTQIRPRPRGA 303
Score = 65.2 bits (136), Expect(2) = 3e-033
Identities = 28/33 (84%), Positives = 29/33 (87%)
Frame = -3 / -1
Query: 343 YPSRQTM*SRCASKRGQGETDTAKSDLVLVEHH 245
YPSRQTM SR ASK GQGETDT +SDLVLVEHH
Sbjct: 397 YPSRQTMTSR*ASKSGQGETDTHRSDLVLVEHH 299
Score = 58.3 bits (121), Expect(2) = 2e-028
Identities = 23/28 (82%), Positives = 23/28 (82%)
Frame = +3 / +3
Query: 270 DFAVSVSPWPLLLAHLLYMVCREGYQAL 353
D VSVSPWPLLLAHLL MVCREGY L
Sbjct: 324 DLCVSVSPWPLLLAHLLVMVCREGYPRL 407
Score = 42.8 bits (87), Expect(3) = 7e-076
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +2 / +2
Query: 2 GLLPKIDWRALVAATRAVG 58
GLLPKIDWRALV ATRA+G
Sbjct: 56 GLLPKIDWRALVDATRALG 112
Score = 33.1 bits (66), Expect(4) = 1e-044
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = -3 / -1
Query: 46 GGGDERAPVDLGEE 5
GG DERAPVDLGEE
Sbjct: 100 GGVDERAPVDLGEE 59
Score = 30.4 bits (60), Expect(4) = 1e-044
Identities = 12/15 (80%), Positives = 15/15 (100%)
Frame = -3 / -1
Query: 175 MNLEERVVDAADGAS 131
++LEERVVDAADGA+
Sbjct: 229 VDLEERVVDAADGAA 185
>gb|BE358024.1|BE358024 DG1_23_D04.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 608
Score = 183 bits (394), Expect(2) = 7e-065
Identities = 83/115 (72%), Positives = 86/115 (74%)
Frame = -1 / -1
Query: 345 DTLRDRPCXXXXXXXXXXXKLTRQNQTSSSWSIMLGMPLLMGKQRLVSGQTREPSWT*TS 166
DTLRDRP KLT +QTSSSWSIMLGMPLLMGK RLVSGQTREPSWT TS
Sbjct: 425 DTLRDRP*RAGEQAKAARAKLTHTDQTSSSWSIMLGMPLLMGKHRLVSGQTREPSWTWTS 246
Query: 165 RSAWWMRRMALPSTSAAPSAKIXXXXXXXXXXXXXRPTARVAATSARQSILGRRP 1
RSAWWMRRMALPSTSAAPSAKI RP+ARVA+TSARQSILGRRP
Sbjct: 245 RSAWWMRRMALPSTSAAPSAKISSSGGCSSGRSSGRPSARVASTSARQSILGRRP 81
Score = 172 bits (371), Expect(4) = 2e-069
Identities = 74/82 (90%), Positives = 77/82 (93%)
Frame = +2 / +1
Query: 101 IFADGAADVEGSAIRRIHHALLEVHVQEGSLVCPDTSRCFPINKGIPNMMLHEDEV*FCR 280
IFA+GAADVEGSAIRRIHHALLEVHVQEGSLVCPDTSRCFPINKGIPNMMLHEDEV*
Sbjct: 181 IFAEGAADVEGSAIRRIHHALLEVHVQEGSLVCPDTSRCFPINKGIPNMMLHEDEV*SVC 360
Query: 281 VSFALASFARAPALHGLSRRVS 346
VSFALA+FA +PA HGLSRRVS
Sbjct: 361 VSFALAAFACSPARHGLSRRVS 426
Score = 85.4 bits (180), Expect(4) = 1e-038
Identities = 32/44 (72%), Positives = 37/44 (84%)
Frame = -3 / -1
Query: 496 LRTKHDVHQINNTKRQFRVLHGYLSYYEGTICKAAIHTSQVQSE 365
+ K DVHQI NTKR+FRVLHGYLSYY+ TICK A HTSQ+QS+
Sbjct: 581 VNNKADVHQITNTKREFRVLHGYLSYYKATICKTAFHTSQIQSD 450
Score = 85.4 bits (180), Expect(2) = 7e-065
Identities = 35/52 (67%), Positives = 40/52 (76%)
Frame = -1 / -2
Query: 519 GNKQFADS*EQSMTCTKLTTRNGNSEYYTAIYHIMRAQSARLQSILHRYNLS 364
G + * +TCTKL T+NGNSEYYTAIYHI+R QSARL SILHRYNL+
Sbjct: 604 GQQTICPQ*ITKLTCTKLPTQNGNSEYYTAIYHIIRPQSARLHSILHRYNLT 449
Score = 79.9 bits (168), Expect(4) = 2e-069
Identities = 31/42 (73%), Positives = 34/42 (80%)
Frame = +3 / +1
Query: 366 SDCTCEVWIAALQIVPS*YDR*PCNTRNCRFVLLIWCTSCFV 491
SDC CEVW A LQIV *YDR*PC+TRN RFVL+IWCTS +
Sbjct: 451 SDCICEVWNAVLQIVAL*YDR*PCSTRNSRFVLVIWCTSALL 576
Score = 73.9 bits (155), Expect(2) = 3e-026
Identities = 33/44 (75%), Positives = 37/44 (84%)
Frame = -2 / -3
Query: 494 KNKA*RAPN*QHETAIPSITRLSIIL*GHNLQGCNPYFTGTI*V 363
K ++*RAPN QH+T IPS TRLSIIL*GHNLQ C PYFT TI*+
Sbjct: 579 K*QS*RAPNYQHKTGIPSTTRLSIIL*GHNLQDCIPYFTDTI*L 448
Score = 72.5 bits (152), Expect(3) = 1e-028
Identities = 30/44 (68%), Positives = 35/44 (79%)
Frame = +1 / +2
Query: 364 TQIVPVKYGLQPCRLCPHNMIDSRVILGIAVSCC*FGARHALFL 495
+QIV VKYG+Q CRL P+NMIDSRV+LGI V C *FGAR +L
Sbjct: 449 SQIVSVKYGMQSCRLWPYNMIDSRVVLGIPVLCW*FGARQLCYL 580
Score = 70.7 bits (148), Expect(3) = 1e-028
Identities = 27/33 (81%), Positives = 28/33 (84%)
Frame = +1 / +3
Query: 247 DAPRGRGLILPCQFRPGLFCSRTCSTWSVAKGI 345
DAPRGRGLI CQFRPG FC TCS+WSVAKGI
Sbjct: 327 DAPRGRGLICVCQFRPGRFCLLTCSSWSVAKGI 425
Score = 67.5 bits (141), Expect(4) = 1e-038
Identities = 27/32 (84%), Positives = 29/32 (90%)
Frame = -2 / -2
Query: 344 IPFATDHVEQVREQKRPGRN*HGKIRPRPRGA 249
IPFATDH EQV +QKRPGRN*H +IRPRPRGA
Sbjct: 424 IPFATDHDEQVSKQKRPGRN*HTQIRPRPRGA 329
Score = 65.2 bits (136), Expect(2) = 3e-026
Identities = 28/33 (84%), Positives = 29/33 (87%)
Frame = -3 / -3
Query: 343 YPSRQTM*SRCASKRGQGETDTAKSDLVLVEHH 245
YPSRQTM SR ASK GQGETDT +SDLVLVEHH
Sbjct: 423 YPSRQTMTSR*ASKSGQGETDTHRSDLVLVEHH 325
Score = 42.8 bits (87), Expect(4) = 2e-069
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +2 / +1
Query: 2 GLLPKIDWRALVAATRAVG 58
GLLPKIDWRALV ATRA+G
Sbjct: 82 GLLPKIDWRALVDATRALG 138
Score = 33.1 bits (66), Expect(4) = 1e-038
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = -3 / -3
Query: 46 GGGDERAPVDLGEE 5
GG DERAPVDLGEE
Sbjct: 126 GGVDERAPVDLGEE 85
Score = 30.4 bits (60), Expect(4) = 1e-038
Identities = 12/15 (80%), Positives = 15/15 (100%)
Frame = -3 / -3
Query: 175 MNLEERVVDAADGAS 131
++LEERVVDAADGA+
Sbjct: 255 VDLEERVVDAADGAA 211
Score = 25.4 bits (49), Expect(4) = 2e-069
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +3 / +3
Query: 486 FVLNCLRIVCCP 521
FV+ C +IVCCP
Sbjct: 570 FVIYCGQIVCCP 605
Score = 22.1 bits (42), Expect(3) = 1e-028
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +2 / +2
Query: 485 LCS*LSANCLLP 520
LC L ANCLLP
Sbjct: 569 LCYLLWANCLLP 604
>gb|CW219751.1|CW219751 104_654_11196963_116_37145_014 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11196963, DNA
sequence
Length = 627
Score = 183 bits (394), Expect(2) = 7e-062
Identities = 83/115 (72%), Positives = 86/115 (74%)
Frame = -1 / +1
Query: 345 DTLRDRPCXXXXXXXXXXXKLTRQNQTSSSWSIMLGMPLLMGKQRLVSGQTREPSWT*TS 166
DTLRDRP KLT +QTSSSWSIMLGMPLLMGK RLVSGQTREPSWT TS
Sbjct: 133 DTLRDRP*RAGEQAKAARAKLTHTDQTSSSWSIMLGMPLLMGKHRLVSGQTREPSWTWTS 312
Query: 165 RSAWWMRRMALPSTSAAPSAKIXXXXXXXXXXXXXRPTARVAATSARQSILGRRP 1
RSAWWMRRMALPSTSAAPSAKI RP+ARVA+TSARQSILGRRP
Sbjct: 313 RSAWWMRRMALPSTSAAPSAKISSSGGCSSGRSSGRPSARVASTSARQSILGRRP 477
Score = 172 bits (371), Expect(3) = 3e-063
Identities = 74/82 (90%), Positives = 77/82 (93%)
Frame = +2 / -2
Query: 101 IFADGAADVEGSAIRRIHHALLEVHVQEGSLVCPDTSRCFPINKGIPNMMLHEDEV*FCR 280
IFA+GAADVEGSAIRRIHHALLEVHVQEGSLVCPDTSRCFPINKGIPNMMLHEDEV*
Sbjct: 377 IFAEGAADVEGSAIRRIHHALLEVHVQEGSLVCPDTSRCFPINKGIPNMMLHEDEV*SVC 198
Query: 281 VSFALASFARAPALHGLSRRVS 346
VSFALA+FA +PA HGLSRRVS
Sbjct: 197 VSFALAAFACSPARHGLSRRVS 132
Score = 75.3 bits (158), Expect(2) = 7e-062
Identities = 28/36 (77%), Positives = 32/36 (88%)
Frame = -3 / +1
Query: 472 QINNTKRQFRVLHGYLSYYEGTICKAAIHTSQVQSE 365
QI NTKR+FRVLHGYLSYY+ TICK A HTSQ+QS+
Sbjct: 1 QITNTKREFRVLHGYLSYYKATICKTAFHTSQIQSD 108
Score = 74.8 bits (157), Expect(4) = 2e-035
Identities = 30/36 (83%), Positives = 33/36 (91%)
Frame = -1 / +2
Query: 471 KLTTRNGNSEYYTAIYHIMRAQSARLQSILHRYNLS 364
KL T+NGNSEYYTAIYHI+R QSARL SILHRYNL+
Sbjct: 2 KLPTQNGNSEYYTAIYHIIRPQSARLHSILHRYNLT 109
Score = 70.7 bits (148), Expect(2) = 1e-024
Identities = 27/33 (81%), Positives = 28/33 (84%)
Frame = +1 / -1
Query: 247 DAPRGRGLILPCQFRPGLFCSRTCSTWSVAKGI 345
DAPRGRGLI CQFRPG FC TCS+WSVAKGI
Sbjct: 231 DAPRGRGLICVCQFRPGRFCLLTCSSWSVAKGI 133
Score = 67.5 bits (141), Expect(4) = 2e-035
Identities = 27/32 (84%), Positives = 29/32 (90%)
Frame = -2 / +2
Query: 344 IPFATDHVEQVREQKRPGRN*HGKIRPRPRGA 249
IPFATDH EQV +QKRPGRN*H +IRPRPRGA
Sbjct: 134 IPFATDHDEQVSKQKRPGRN*HTQIRPRPRGA 229
Score = 66.1 bits (138), Expect(3) = 3e-063
Identities = 27/35 (77%), Positives = 29/35 (82%)
Frame = +3 / -2
Query: 366 SDCTCEVWIAALQIVPS*YDR*PCNTRNCRFVLLI 470
SDC CEVW A LQIV *YDR*PC+TRN RFVL+I
Sbjct: 107 SDCICEVWNAVLQIVAL*YDR*PCSTRNSRFVLVI 3
Score = 65.2 bits (136), Expect(2) = 2e-023
Identities = 28/33 (84%), Positives = 29/33 (87%)
Frame = -3 / +3
Query: 343 YPSRQTM*SRCASKRGQGETDTAKSDLVLVEHH 245
YPSRQTM SR ASK GQGETDT +SDLVLVEHH
Sbjct: 135 YPSRQTMTSR*ASKSGQGETDTHRSDLVLVEHH 233
Score = 64.8 bits (135), Expect(2) = 2e-023
Identities = 28/36 (77%), Positives = 30/36 (83%)
Frame = -2 / +3
Query: 470 N*QHETAIPSITRLSIIL*GHNLQGCNPYFTGTI*V 363
N QH+T IPS TRLSIIL*GHNLQ C PYFT TI*+
Sbjct: 3 NYQHKTGIPSTTRLSIIL*GHNLQDCIPYFTDTI*L 110
Score = 63.4 bits (132), Expect(2) = 1e-024
Identities = 26/36 (72%), Positives = 30/36 (83%)
Frame = +1 / -3
Query: 364 TQIVPVKYGLQPCRLCPHNMIDSRVILGIAVSCC*F 471
+QIV VKYG+Q CRL P+NMIDSRV+LGI V C *F
Sbjct: 109 SQIVSVKYGMQSCRLWPYNMIDSRVVLGIPVLCW*F 2
Score = 42.8 bits (87), Expect(3) = 3e-063
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +2 / -2
Query: 2 GLLPKIDWRALVAATRAVG 58
GLLPKIDWRALV ATRA+G
Sbjct: 476 GLLPKIDWRALVDATRALG 420
Score = 33.1 bits (66), Expect(4) = 2e-035
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = -3 / +3
Query: 46 GGGDERAPVDLGEE 5
GG DERAPVDLGEE
Sbjct: 432 GGVDERAPVDLGEE 473
Score = 30.4 bits (60), Expect(4) = 2e-035
Identities = 12/15 (80%), Positives = 15/15 (100%)
Frame = -3 / +3
Query: 175 MNLEERVVDAADGAS 131
++LEERVVDAADGA+
Sbjct: 303 VDLEERVVDAADGAA 347
>gb|CW241319.1|CW241319 104_700_11218701_148_37542_089 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11218701, DNA
sequence
Length = 624
Score = 183 bits (394), Expect = 2e-045
Identities = 83/115 (72%), Positives = 86/115 (74%)
Frame = -1 / +3
Query: 345 DTLRDRPCXXXXXXXXXXXKLTRQNQTSSSWSIMLGMPLLMGKQRLVSGQTREPSWT*TS 166
DTLRDRP KLT +QTSSSWSIMLGMPLLMGK RLVSGQTREPSWT TS
Sbjct: 12 DTLRDRP*RAGEQAKAARAKLTHTDQTSSSWSIMLGMPLLMGKHRLVSGQTREPSWTWTS 191
Query: 165 RSAWWMRRMALPSTSAAPSAKIXXXXXXXXXXXXXRPTARVAATSARQSILGRRP 1
RSAWWMRRMALPSTSAAPSAKI RP+ARVA+TSARQSILGRRP
Sbjct: 192 RSAWWMRRMALPSTSAAPSAKISSSGGCSSGRSSGRPSARVASTSARQSILGRRP 356
Score = 172 bits (371), Expect(2) = 5e-049
Identities = 74/82 (90%), Positives = 77/82 (93%)
Frame = +2 / -3
Query: 101 IFADGAADVEGSAIRRIHHALLEVHVQEGSLVCPDTSRCFPINKGIPNMMLHEDEV*FCR 280
IFA+GAADVEGSAIRRIHHALLEVHVQEGSLVCPDTSRCFPINKGIPNMMLHEDEV*
Sbjct: 256 IFAEGAADVEGSAIRRIHHALLEVHVQEGSLVCPDTSRCFPINKGIPNMMLHEDEV*SVC 77
Query: 281 VSFALASFARAPALHGLSRRVS 346
VSFALA+FA +PA HGLSRRVS
Sbjct: 76 VSFALAAFACSPARHGLSRRVS 11
Score = 42.8 bits (87), Expect(2) = 5e-049
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +2 / -3
Query: 2 GLLPKIDWRALVAATRAVG 58
GLLPKIDWRALV ATRA+G
Sbjct: 355 GLLPKIDWRALVDATRALG 299
>gb|BE357948.1|BE357948 DG1_23_D04.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 608
Score = 183 bits (394), Expect = 2e-045
Identities = 83/115 (72%), Positives = 86/115 (74%)
Frame = -1 / -3
Query: 345 DTLRDRPCXXXXXXXXXXXKLTRQNQTSSSWSIMLGMPLLMGKQRLVSGQTREPSWT*TS 166
DTLRDRP KLT +QTSSSWSIMLGMPLLMGK RLVSGQTREPSWT TS
Sbjct: 576 DTLRDRP*RAGEQAKAARAKLTHTDQTSSSWSIMLGMPLLMGKHRLVSGQTREPSWTWTS 397
Query: 165 RSAWWMRRMALPSTSAAPSAKIXXXXXXXXXXXXXRPTARVAATSARQSILGRRP 1
RSAWWMRRMALPSTSAAPSAKI RP+ARVA+TSARQSILGRRP
Sbjct: 396 RSAWWMRRMALPSTSAAPSAKISSSGGCSSGRSSGRPSARVASTSARQSILGRRP 232
Score = 172 bits (371), Expect(2) = 5e-049
Identities = 74/82 (90%), Positives = 77/82 (93%)
Frame = +2 / +2
Query: 101 IFADGAADVEGSAIRRIHHALLEVHVQEGSLVCPDTSRCFPINKGIPNMMLHEDEV*FCR 280
IFA+GAADVEGSAIRRIHHALLEVHVQEGSLVCPDTSRCFPINKGIPNMMLHEDEV*
Sbjct: 332 IFAEGAADVEGSAIRRIHHALLEVHVQEGSLVCPDTSRCFPINKGIPNMMLHEDEV*SVC 511
Query: 281 VSFALASFARAPALHGLSRRVS 346
VSFALA+FA +PA HGLSRRVS
Sbjct: 512 VSFALAAFACSPARHGLSRRVS 577
Score = 42.8 bits (87), Expect(2) = 5e-049
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +2 / +2
Query: 2 GLLPKIDWRALVAATRAVG 58
GLLPKIDWRALV ATRA+G
Sbjct: 233 GLLPKIDWRALVDATRALG 289
>gb|CW309100.1|CW309100 104_797_11469018_148_35726_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11469018, DNA
sequence
Length = 625
Score = 178 bits (383), Expect = 7e-044
Identities = 81/113 (71%), Positives = 84/113 (74%)
Frame = -1 / +2
Query: 339 LRDRPCXXXXXXXXXXXKLTRQNQTSSSWSIMLGMPLLMGKQRLVSGQTREPSWT*TSRS 160
LRDRP KLT +QTSSSWSIMLGMPLLMGK RLVSGQTREPSWT TSRS
Sbjct: 2 LRDRP*RAGEQAKAARAKLTHTDQTSSSWSIMLGMPLLMGKHRLVSGQTREPSWTWTSRS 181
Query: 159 AWWMRRMALPSTSAAPSAKIXXXXXXXXXXXXXRPTARVAATSARQSILGRRP 1
AWWMRRMALPSTSAAPSAKI RP+ARVA+TSARQSILGRRP
Sbjct: 182 AWWMRRMALPSTSAAPSAKISSSGGCSSGRSSGRPSARVASTSARQSILGRRP 340
Score = 169 bits (363), Expect(2) = 6e-048
Identities = 72/80 (90%), Positives = 75/80 (93%)
Frame = +2 / -2
Query: 101 IFADGAADVEGSAIRRIHHALLEVHVQEGSLVCPDTSRCFPINKGIPNMMLHEDEV*FCR 280
IFA+GAADVEGSAIRRIHHALLEVHVQEGSLVCPDTSRCFPINKGIPNMMLHEDEV*
Sbjct: 240 IFAEGAADVEGSAIRRIHHALLEVHVQEGSLVCPDTSRCFPINKGIPNMMLHEDEV*SVC 61
Query: 281 VSFALASFARAPALHGLSRR 340
VSFALA+FA +PA HGLSRR
Sbjct: 60 VSFALAAFACSPARHGLSRR 1
Score = 42.8 bits (87), Expect(2) = 6e-048
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +2 / -2
Query: 2 GLLPKIDWRALVAATRAVG 58
GLLPKIDWRALV ATRA+G
Sbjct: 339 GLLPKIDWRALVDATRALG 283
>gb|CW309099.1|CW309099 104_797_11469018_116_35722_067 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11469018, DNA
sequence
Length = 634
Score = 171 bits (367), Expect = 1e-041
Identities = 75/95 (78%), Positives = 78/95 (82%)
Frame = -1 / -2
Query: 285 LTRQNQTSSSWSIMLGMPLLMGKQRLVSGQTREPSWT*TSRSAWWMRRMALPSTSAAPSA 106
LT +QTSSSWSIMLGMPLLMGK RLVSGQTREPSWT TSRSAWWMRRMALPSTSAAPSA
Sbjct: 609 LTHTDQTSSSWSIMLGMPLLMGKHRLVSGQTREPSWTWTSRSAWWMRRMALPSTSAAPSA 430
Query: 105 KIXXXXXXXXXXXXXRPTARVAATSARQSILGRRP 1
KI RP+ARVA+TSARQSILGRRP
Sbjct: 429 KISSSGGCSSGRSSGRPSARVASTSARQSILGRRP 325
Score = 151 bits (324), Expect(2) = 1e-042
Identities = 64/69 (92%), Positives = 66/69 (95%)
Frame = +2 / +2
Query: 101 IFADGAADVEGSAIRRIHHALLEVHVQEGSLVCPDTSRCFPINKGIPNMMLHEDEV*FCR 280
IFA+GAADVEGSAIRRIHHALLEVHVQEGSLVCPDTSRCFPINKGIPNMMLHEDEV*
Sbjct: 425 IFAEGAADVEGSAIRRIHHALLEVHVQEGSLVCPDTSRCFPINKGIPNMMLHEDEV*SVC 604
Query: 281 VSFALASFA 307
VSFALA+FA
Sbjct: 605 VSFALAAFA 631
Score = 42.8 bits (87), Expect(2) = 1e-042
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +2 / +2
Query: 2 GLLPKIDWRALVAATRAVG 58
GLLPKIDWRALV ATRA+G
Sbjct: 326 GLLPKIDWRALVDATRALG 382
>gb|CW219752.1|CW219752 104_654_11196963_148_37146_014 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11196963, DNA
sequence
Length = 588
Score = 124 bits (265), Expect = 1e-027
Identities = 55/71 (77%), Positives = 57/71 (80%)
Frame = -1 / -3
Query: 213 RLVSGQTREPSWT*TSRSAWWMRRMALPSTSAAPSAKIXXXXXXXXXXXXXRPTARVAAT 34
RLVSGQTREPSWT* SRSAWWMRRMALPSTSAAPSAKI RP+ARVA+T
Sbjct: 583 RLVSGQTREPSWT*PSRSAWWMRRMALPSTSAAPSAKISSSGGCSSGRSSGRPSARVAST 404
Query: 33 SARQSILGRRP 1
SARQSILGRRP
Sbjct: 403 SARQSILGRRP 371
Score = 90.9 bits (192), Expect(2) = 1e-024
Identities = 37/39 (94%), Positives = 38/39 (97%)
Frame = +2 / +3
Query: 101 IFADGAADVEGSAIRRIHHALLEVHVQEGSLVCPDTSRC 217
IFA+GAADVEGSAIRRIHHALLE HVQEGSLVCPDTSRC
Sbjct: 471 IFAEGAADVEGSAIRRIHHALLEGHVQEGSLVCPDTSRC 587
Score = 42.8 bits (87), Expect(2) = 1e-024
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +2 / +3
Query: 2 GLLPKIDWRALVAATRAVG 58
GLLPKIDWRALV ATRA+G
Sbjct: 372 GLLPKIDWRALVDATRALG 428
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 507,402,312
Number of Sequences: 832831
Number of extensions: 7053738
Number of successful extensions: 76809
Number of sequences better than 1.0e-020: 8
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 16391572281
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)