TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3838122.2.1
(1865 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW294614.1|CW294614 104_775_11415280_148_35609_054 Sorgh... 243 e-120
gb|CW492384.1|CW492384 fsbb001f282k08f0 Sorghum methylation... 343 e-119
gb|BE361676.1|BE361676 DG1_81_H04.g1_A002 Dark Grown 1 (DG1... 268 e-112
gb|BZ349897.1|BZ349897 hr47a12.g1 WGS-SbicolorF (JM107 adap... 284 e-108
gb|BE361549.1|BE361549 DG1_81_H04.b1_A002 Dark Grown 1 (DG1... 348 e-103
gb|CW200491.1|CW200491 104_626_11184087_116_36869_064 Sorgh... 146 2e-091
gb|BG558451.1|BG558451 RHIZ2_67_F11.b1_A003 Rhizome2 (RHIZ2... 207 1e-082
gb|CW384798.1|CW384798 fsbb001f067p17f0 Sorghum methylation... 284 4e-075
gb|CW257600.1|CW257600 104_723_11227424_148_35157_030 Sorgh... 179 2e-067
gb|CW200492.1|CW200492 104_626_11184087_148_36870_064 Sorgh... 181 2e-064
gb|CW169907.1|CW169907 104_580_11154918_148_36511_029 Sorgh... 181 2e-064
gb|BF422253.1|BF422253 FM1_13_B02.b1_A003 Floral-Induced Me... 215 3e-061
gb|CW099054.1|CW099054 104_465_11003344_148_34369_050 Sorgh... 234 4e-060
gb|CW257599.1|CW257599 104_723_11227424_116_35161_030 Sorgh... 181 6e-056
gb|CW453451.1|CW453451 fsbb001f197h09f0 Sorghum methylation... 181 4e-044
gb|CN135740.1|CN135740 OX1_38_E07.g1_A002 Oxidatively-stres... 96 2e-042
gb|CW298322.1|CW298322 104_780_11462518_148_35651_081 Sorgh... 95 1e-041
gb|CW294613.1|CW294613 104_775_11415280_116_35605_054 Sorgh... 169 1e-040
gb|CL159656.1|CL159656 104_349_10804417_116_31382_241 Sorgh... 109 1e-040
gb|CW394782.1|CW394782 fsbb001f082i17f0 Sorghum methylation... 128 4e-040
gb|CW265997.1|CW265997 104_735_11232189_116_35271_087 Sorgh... 158 1e-038
gb|CW298321.1|CW298321 104_780_11462518_116_35647_081 Sorgh... 128 2e-038
gb|CB925835.1|CB925835 ABA1_23_E07.g1_A012 Abscisic acid-tr... 115 2e-037
gb|CW283797.1|CW283797 104_760_11409436_148_35488_010 Sorgh... 123 6e-037
gb|CW042088.1|CW042088 104_275_10506931_114_30284 Sorghum m... 75 1e-036
gb|CW276976.1|CW276976 104_750_11405776_148_35399_050 Sorgh... 109 5e-035
gb|CW033209.1|CW033209 104_262_10501822_115_30362 Sorghum m... 105 8e-034
gb|CW221655.1|CW221655 104_656_11198025_148_37167_033 Sorgh... 58 6e-030
gb|CL151746.1|CL151746 104_334_10779469_114_31361_253 Sorgh... 83 9e-030
gb|CF484409.1|CF484409 POL1_25_D08.b1_A002 Pollen Sorghum b... 133 1e-029
gb|BE595814.1|BE595814 PI1_54_D08.b1_A002 Pathogen induced ... 96 2e-029
gb|CF485817.1|CF485817 POL1_33_G12.g1_A002 Pollen Sorghum b... 111 1e-027
gb|CW439175.1|CW439175 fsbb001f157d01k0 Sorghum methylation... 101 3e-026
gb|CF483263.1|CF483263 POL1_21_B02.b1_A002 Pollen Sorghum b... 121 3e-026
gb|CX611907.1|CX611907 ANR1_27_H10.b1_A002 Anaerobic roots ... 66 6e-026
gb|CW492385.1|CW492385 fsbb001f282k08k0 Sorghum methylation... 116 8e-025
gb|CN132843.1|CN132843 OX1_8_C05.g1_A002 Oxidatively-stress... 112 9e-025
gb|CW352129.1|CW352129 fsbb001f014e01f0 Sorghum methylation... 51 2e-024
gb|CW176524.1|CW176524 104_589_11158533_148_36583_087 Sorgh... 115 3e-024
gb|CD220374.1|CD220374 CCC1_66_C08.g1_A007 Callus culture/c... 115 3e-024
gb|CD226421.1|CD226421 CCC1_45_B12.g1_A007 Callus culture/c... 115 3e-024
gb|CF485961.1|CF485961 POL1_34_G06.g1_A002 Pollen Sorghum b... 115 3e-024
gb|CW050896.1|CW050896 104_291_10514924_114_30192 Sorghum m... 72 4e-024
gb|CW199054.1|CW199054 104_624_11183306_116_36856_015 Sorgh... 84 4e-024
gb|CW043830.1|CW043830 104_279_10508602_114_30276 Sorghum m... 88 1e-023
gb|CD425117.1|CD425117 SA1_10_D06.g1_A002 Salicylic acid-tr... 112 2e-023
gb|CX615540.1|CX615540 GABR1_20_F03.g1_A002 GA- or brassino... 112 2e-023
gb|CW164970.1|CW164970 104_573_11152260_148_36476_046 Sorgh... 111 3e-023
gb|CF480551.1|CF480551 POL1_66_A09.g1_A002 Pollen Sorghum b... 111 3e-023
gb|CF480611.1|CF480611 POL1_66_G02.g1_A002 Pollen Sorghum b... 111 3e-023
gb|CF481221.1|CF481221 POL1_70_E03.g1_A002 Pollen Sorghum b... 111 3e-023
gb|CF483034.1|CF483034 POL1_10_G04.g1_A002 Pollen Sorghum b... 111 3e-023
gb|CF483326.1|CF483326 POL1_21_B02.g1_A002 Pollen Sorghum b... 111 3e-023
gb|CF483368.1|CF483368 POL1_21_F08.g1_A002 Pollen Sorghum b... 111 3e-023
gb|CF486748.1|CF486748 POL1_39_B11.g1_A002 Pollen Sorghum b... 111 3e-023
gb|CF487273.1|CF487273 POL1_42_F11.g1_A002 Pollen Sorghum b... 111 3e-023
gb|CW451017.1|CW451017 fsbb001f189o15k0 Sorghum methylation... 82 3e-023
gb|CX607759.1|CX607759 ANR1_30_C08.g1_A002 Anaerobic roots ... 57 3e-023
gb|CF480721.1|CF480721 POL1_67_B05.g1_A002 Pollen Sorghum b... 111 4e-023
gb|CF482541.1|CF482541 POL1_7_C12.g1_A002 Pollen Sorghum bi... 111 4e-023
gb|CF488213.1|CF488213 POL1_48_A10.g1_A002 Pollen Sorghum b... 111 5e-023
gb|CW276975.1|CW276975 104_750_11405776_116_35395_050 Sorgh... 64 9e-023
gb|CF481558.1|CF481558 POL1_72_E04.g1_A002 Pollen Sorghum b... 109 1e-022
gb|CF483384.1|CF483384 POL1_21_H05.g1_A002 Pollen Sorghum b... 109 1e-022
gb|CF483505.1|CF483505 POL1_22_E10.g1_A002 Pollen Sorghum b... 109 1e-022
gb|CF486935.1|CF486935 POL1_40_F03.g1_A002 Pollen Sorghum b... 109 1e-022
gb|BG558157.1|BG558157 RHIZ2_67_F11.g1_A003 Rhizome2 (RHIZ2... 100 2e-022
gb|CC059780.1|CC059780 ii28f12.b1 WGS-SbicolorF (DH5a methy... 107 5e-022
gb|CW070613.1|CW070613 104_321_10526871_1_30090 Sorghum met... 37 1e-021
gb|CW311563.1|CW311563 104_801_11470297_148_36282_013 Sorgh... 106 1e-021
gb|CW457841.1|CW457841 fsbb001f203n07f0 Sorghum methylation... 68 3e-021
gb|CW091311.1|CW091311 104_453_10998475_114_33030_078 Sorgh... 74 4e-021
gb|CW473332.1|CW473332 fsbb001f228k15f0 Sorghum methylation... 104 6e-021
>gb|CW294614.1|CW294614 104_775_11415280_148_35609_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11415280, DNA
sequence
Length = 605
Score = 243 bits (525), Expect(2) = e-120
Identities = 92/98 (93%), Positives = 93/98 (94%)
Frame = -1 / -3
Query: 1796 PDQWYDTNGVWTGSATTLPDGRLAMLYRGSTNASVQVQCLAVPADDADPLLTNWTKYEGN 1617
PDQWYDTNGVWTGSATTLPDGRLAMLY GSTNASVQVQCLAVPADDADPLLTNWTKYEGN
Sbjct: 603 PDQWYDTNGVWTGSATTLPDGRLAMLYTGSTNASVQVQCLAVPADDADPLLTNWTKYEGN 424
Query: 1616 PVLYPPPGIGPKDFRDPTTVWIDPSDGAWRVVIGSKDD 1503
PVLYPPPGIGPKDFRDPTT W DPSD WR+VIGSKDD
Sbjct: 423 PVLYPPPGIGPKDFRDPTTAWFDPSDNTWRIVIGSKDD 310
Score = 211 bits (456), Expect(2) = e-120
Identities = 83/99 (83%), Positives = 87/99 (87%)
Frame = -1 / -3
Query: 1496 HAGIAVVYRTTDLVHFELLPGLLHRVDGTGMWECIDFYPVATRGRASANGVDMSDAIASN 1317
HAGIAVVYRT D V FELLPGLLHRV TGMWECIDFYPVATRG+AS NGVDMSDA N
Sbjct: 297 HAGIAVVYRTKDFVSFELLPGLLHRVARTGMWECIDFYPVATRGKASGNGVDMSDAFGKN 118
Query: 1316 GAVAGDVLHVMKASMDDDRHDYYALGRYDAAANAWTPID 1200
GA+ GDV+HVMKASMDDDRHDYYALGRYDAA N WTP+D
Sbjct: 117 GAIVGDVVHVMKASMDDDRHDYYALGRYDAATNEWTPLD 1
Score = 174 bits (374), Expect(2) = 5e-077
Identities = 73/99 (73%), Positives = 80/99 (80%)
Frame = +1 / +2
Query: 1501 SSSLEPMTTRHAPSEGSIQTVVGSRKSLGPMPGGGYSTGLPSYLVQLVXXXXXXXXXTAR 1680
+SSL+PMT R S+GS VVGSRKSLGP+PGGGY TGLPSYLVQLV TAR
Sbjct: 308 ASSLDPMTMRQVLSDGSNHAVVGSRKSLGPIPGGGYRTGLPSYLVQLVSSGSASSAGTAR 487
Query: 1681 HCTWTEALVEPL*SIARRPSGSVVADPVHTPLVSYHWSG 1797
HCT TEALVEP+*S+ARRPSGSVVA+PV TPLVSYHWSG
Sbjct: 488 HCTCTEALVEPV*SMARRPSGSVVAEPVQTPLVSYHWSG 604
Score = 159 bits (342), Expect(2) = 8e-046
Identities = 70/88 (79%), Positives = 73/88 (82%)
Frame = +3 / +1
Query: 1530 PCAVRGVDPDRGGVAEVLGPDARGRVQHRVALVLGPVGEQRVGVVGGHGQALHLDGGVGG 1709
P VR V+P RGGV EVLGPD R RVQ RVALVLGPVGEQRVGV+GG G+ALHL GGVGG
Sbjct: 337 PGVVRRVEPRRGGVTEVLGPDPRRRVQDRVALVLGPVGEQRVGVIGGDGEALHLHGGVGG 516
Query: 1710 APVEHCEAAVGERGGGPRPHAVGVVPLV 1793
A VEH EAAVGERGGG P AVGVVPLV
Sbjct: 517 AGVEHGEAAVGERGGGACPDAVGVVPLV 600
Score = 137 bits (293), Expect(2) = 5e-077
Identities = 59/79 (74%), Positives = 65/79 (82%)
Frame = +1 / +2
Query: 1273 MLAFMTCRTSPATAPLLAMASDMSTPLADALPRVATG*KSMHSHMPVPSTRCSRPGRSSK 1452
MLAF+TC TSP AP L ASDMSTP DALPRVATG*KSMHSH+PV +TR RPGRSSK
Sbjct: 74 MLAFITCTTSPTMAPFLPKASDMSTPFPDALPRVATG*KSMHSHIPVLATRWRRPGRSSK 253
Query: 1453 CTRSVVR*TTAMPAWPSSS 1509
T+S+VR*TTAMPAW S+
Sbjct: 254 LTKSLVR*TTAMPAWSPSA 310
Score = 85.8 bits (181), Expect(3) = 1e-031
Identities = 33/40 (82%), Positives = 34/40 (85%)
Frame = -2 / -1
Query: 1798 CPTSGTTPTACGRGPPPRSPTAASQCSTGAPPTPPSRCSA 1679
C TSGTTPTA G+ PPPRSPTAAS CST APPTPP RCSA
Sbjct: 605 CRTSGTTPTASGQAPPPRSPTAASPCSTPAPPTPPCRCSA 486
Score = 65.2 bits (136), Expect(3) = 1e-031
Identities = 25/30 (83%), Positives = 26/30 (86%)
Frame = -3 / -2
Query: 1644 HQLDQVRGQPGAVPAPGHRAQGLPRPHHGL 1555
HQLDQVRGQPG VPA G RAQGLP PHHG+
Sbjct: 451 HQLDQVRGQPGPVPAAGDRAQGLP*PHHGV 362
Score = 47.3 bits (97), Expect(2) = 8e-046
Identities = 21/34 (61%), Positives = 25/34 (73%)
Frame = +3 / +1
Query: 1359 RPASCGDGVEVDALPHAGAVDAVQQAREELEVHQ 1460
R A+ GDGVEVDALPH DAV++A EELE +
Sbjct: 160 RLAAGGDGVEVDALPHPRPRDAVEEAGEELEADE 261
Score = 31.8 bits (63), Expect(3) = 1e-031
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = -3 / -2
Query: 1278 QHGRRPPRLLRAGEV 1234
QHGRRPP LLRA EV
Sbjct: 79 QHGRRPP*LLRAREV 35
>gb|CW492384.1|CW492384 fsbb001f282k08f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f282k08, DNA
sequence
Length = 632
Score = 343 bits (744), Expect(2) = e-119
Identities = 135/153 (88%), Positives = 140/153 (91%)
Frame = -1 / -2
Query: 1496 HAGIAVVYRTTDLVHFELLPGLLHRVDGTGMWECIDFYPVATRGRASANGVDMSDAIASN 1317
HAGIAVVYRT D V FELLPGLLHRV TGMWECIDFYPVATRG+AS NGVDMSDA N
Sbjct: 490 HAGIAVVYRTKDFVSFELLPGLLHRVARTGMWECIDFYPVATRGKASGNGVDMSDAFGKN 311
Query: 1316 GAVAGDVLHVMKASMDDDRHDYYALGRYDAAANAWTPIDAGRDVGIGLRYDWGKFYASKT 1137
GA+ GDV+HVMKASMDDDRHDYYALGRYDAA N WTP+DA +DVGIGLRYDWGKFYASKT
Sbjct: 310 GAIVGDVVHVMKASMDDDRHDYYALGRYDAATNEWTPLDAEKDVGIGLRYDWGKFYASKT 131
Query: 1136 FYDPAKRRRVLWGWVGETDSERADVSKGWASLQ 1038
FYDPAKRRRVLWGWVGETDSERADVSKGWASLQ
Sbjct: 130 FYDPAKRRRVLWGWVGETDSERADVSKGWASLQ 32
Score = 137 bits (293), Expect(3) = 4e-076
Identities = 59/79 (74%), Positives = 65/79 (82%)
Frame = +1 / +3
Query: 1273 MLAFMTCRTSPATAPLLAMASDMSTPLADALPRVATG*KSMHSHMPVPSTRCSRPGRSSK 1452
MLAF+TC TSP AP L ASDMSTP DALPRVATG*KSMHSH+PV +TR RPGRSSK
Sbjct: 267 MLAFITCTTSPTMAPFLPKASDMSTPFPDALPRVATG*KSMHSHIPVLATRWRRPGRSSK 446
Query: 1453 CTRSVVR*TTAMPAWPSSS 1509
T+S+VR*TTAMPAW S+
Sbjct: 447 LTKSLVR*TTAMPAWSPSA 503
Score = 111 bits (238), Expect(3) = 4e-076
Identities = 49/58 (84%), Positives = 51/58 (87%)
Frame = +1 / +3
Query: 1039 CSDAHPLDTSARSESVSPTHPHSTRRRLAGS*NVLDA*NLPQS*RRPMPTSLPASIGV 1212
C+DAHPL+TSARSESVSPTHP STRRRLAGS* VLDA*NLPQS R PMPTS AS GV
Sbjct: 33 CNDAHPLETSARSESVSPTHPQSTRRRLAGS*KVLDA*NLPQSYRSPMPTSFSASSGV 206
Score = 107 bits (228), Expect(2) = e-119
Identities = 38/43 (88%), Positives = 39/43 (90%)
Frame = -1 / -2
Query: 1631 KYEGNPVLYPPPGIGPKDFRDPTTVWIDPSDGAWRVVIGSKDD 1503
KYEGNPVLYPPPGIGPKDFRDPTT W DPSD WR+VIGSKDD
Sbjct: 631 KYEGNPVLYPPPGIGPKDFRDPTTAWFDPSDNTWRIVIGSKDD 503
Score = 84.5 bits (178), Expect(3) = 4e-028
Identities = 36/46 (78%), Positives = 40/46 (86%)
Frame = -3 / -1
Query: 1164 LGQVLRVQDVLRPGQAPPRAVGMGRRDRLGARGRVQGMGVAAGYPP 1027
LGQVLRVQD+L P QAPPRA+GMGRRDRLGAR R+QGMG+ AG P
Sbjct: 158 LGQVLRVQDLL*PRQAPPRALGMGRRDRLGAR*RLQGMGIVAGTYP 21
Score = 79.9 bits (168), Expect(4) = 2e-032
Identities = 31/43 (72%), Positives = 32/43 (74%)
Frame = +2 / +1
Query: 1028 GGYPAATPIPWTRPRAPSLSRRPIPTARGGAWPGRRTSWTRRT 1156
G PA PIPW R RAPS SRRPIP ARGGAW G R SWTR+T
Sbjct: 22 G*VPATMPIPWRRQRAPSRSRRPIPRARGGAWRGHRRSWTRKT 150
Score = 78.0 bits (164), Expect(3) = 4e-076
Identities = 32/44 (72%), Positives = 36/44 (81%)
Frame = +1 / +3
Query: 1501 SSSLEPMTTRHAPSEGSIQTVVGSRKSLGPMPGGGYSTGLPSYL 1632
+SSL+PMT R S+GS VVGSRKSLGP+PGGGY TGLPSYL
Sbjct: 501 ASSLDPMTMRQVLSDGSNHAVVGSRKSLGPIPGGGYRTGLPSYL 632
Score = 55.6 bits (115), Expect(4) = 2e-032
Identities = 25/34 (73%), Positives = 26/34 (76%)
Frame = +3 / +2
Query: 1530 PCAVRGVDPDRGGVAEVLGPDARGRVQHRVALVL 1631
P VR V+P RGGV EVLGPD R RVQ RVALVL
Sbjct: 530 PGVVRRVEPRRGGVTEVLGPDPRRRVQDRVALVL 631
Score = 54.7 bits (113), Expect(3) = 4e-028
Identities = 21/26 (80%), Positives = 22/26 (84%)
Frame = -3 / -1
Query: 1632 QVRGQPGAVPAPGHRAQGLPRPHHGL 1555
QVRGQPG VPA G RAQGLP PHHG+
Sbjct: 632 QVRGQPGPVPAAGDRAQGLP*PHHGV 555
Score = 47.3 bits (97), Expect(4) = 2e-032
Identities = 21/34 (61%), Positives = 25/34 (73%)
Frame = +3 / +2
Query: 1359 RPASCGDGVEVDALPHAGAVDAVQQAREELEVHQ 1460
R A+ GDGVEVDALPH DAV++A EELE +
Sbjct: 353 RLAAGGDGVEVDALPHPRPRDAVEEAGEELEADE 454
Score = 31.8 bits (63), Expect(3) = 4e-028
Identities = 13/15 (86%), Positives = 13/15 (86%)
Frame = -3 / -1
Query: 1278 QHGRRPPRLLRAGEV 1234
QHGRRPP LLRA EV
Sbjct: 272 QHGRRPP*LLRAREV 228
Score = 21.7 bits (41), Expect(4) = 2e-032
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2 / +1
Query: 1274 CWPS*RA 1294
CWPS*RA
Sbjct: 268 CWPS*RA 288
>gb|BE361676.1|BE361676 DG1_81_H04.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 664
Score = 268 bits (580), Expect(2) = e-112
Identities = 115/121 (95%), Positives = 117/121 (96%)
Frame = -1 / +2
Query: 719 REQTAVYFYVAKGLDGSLATHFCQDESRSSSATDIVKRVVGSAVPVLEDEATLSLRVLVD 540
REQTAVYFYVAKGLDGSL THFCQDESRSSSA DIVKRVVGS+VPVL+DE TLSLRVLVD
Sbjct: 212 REQTAVYFYVAKGLDGSLTTHFCQDESRSSSANDIVKRVVGSSVPVLDDETTLSLRVLVD 391
Query: 539 HSIVESFAQGGRSTATSRVYPTEAIYANAGVFLFNNATAARVTATKLVVHEMDSSYNHDY 360
HSIVESFAQGGRSTATSRVYPTEAIYANAGVFLFNNATAARVTA KLVVHEMDSSYNHDY
Sbjct: 392 HSIVESFAQGGRSTATSRVYPTEAIYANAGVFLFNNATAARVTAKKLVVHEMDSSYNHDY 571
Query: 359 M 357
M
Sbjct: 572 M 574
Score = 215 bits (463), Expect(3) = 1e-070
Identities = 95/120 (79%), Positives = 99/120 (82%)
Frame = +1 / -2
Query: 358 M*SWLYDESISWTTSFVAVTRAAVALLKRKTPALA*MASVG*TRDVAVDLPPCAKLSTME 537
M*SWL DESISWTTSF+AVTRAAVALLKR TPALA*MASVG*TR+VAVDLPPCAKLSTME
Sbjct: 573 M*SWL*DESISWTTSFLAVTRAAVALLKRNTPALA*MASVG*TREVAVDLPPCAKLSTME 394
Query: 538 WXXXXXXXXXXXXXXXXXALPTTRLTMSVALEERDSSWQKCVAREPSRPLAT*K*TAVCS 717
W LPTTRLTMS+ALE+RDSSWQKCV REPSRPLAT*K*TAVCS
Sbjct: 393 WSTSTRSESVVSSSSTGTELPTTRLTMSLALEDRDSSWQKCVVREPSRPLAT*K*TAVCS 214
Score = 159 bits (342), Expect(2) = e-112
Identities = 66/79 (83%), Positives = 70/79 (88%)
Frame = -1 / +2
Query: 932 GITIDYGSVFPLNLRRATQLDIEAEFQLDRRAVMSLNEADVGYNCSTSGGAAGRGALGPF 753
GITIDYGS FPLNLRRATQLDIEAEFQLDRRAVMSLNEADVGYNCSTSGGAA RGALGPF
Sbjct: 2 GITIDYGSAFPLNLRRATQLDIEAEFQLDRRAVMSLNEADVGYNCSTSGGAAARGALGPF 181
Query: 752 GLFVLADRRLRREQTAVYF 696
GL VLAD+ LR + ++
Sbjct: 182 GLLVLADKHLREQTAVYFY 238
Score = 71.2 bits (149), Expect(3) = 1e-070
Identities = 34/64 (53%), Positives = 36/64 (56%)
Frame = +3 / -1
Query: 714 LAAEAAVGEDXXXXXXXXXXXXXXXXXXXXXXHVRLVERHDGAAVQLELRLDVQLGGAAE 893
L A+ VGED HV LVERHDGAAV+LELRLDVQL GA E
Sbjct: 220 LLAQVLVGEDEQAEGAEGTAGRGATARAAVVPHVGLVERHDGAAVELELRLDVQLRGAPE 41
Query: 894 VERE 905
VERE
Sbjct: 40 VERE 29
Score = 59.7 bits (124), Expect(3) = 1e-028
Identities = 24/27 (88%), Positives = 25/27 (92%)
Frame = +3 / -1
Query: 504 PPALREALDDGVVDEHPERERGLVLQH 584
P ALREALDDGVVDEH ERERGLV+QH
Sbjct: 427 PSALREALDDGVVDEHAERERGLVVQH 347
Score = 55.1 bits (114), Expect(3) = 1e-028
Identities = 26/41 (63%), Positives = 26/41 (63%)
Frame = +1 / -2
Query: 811 TSASLSDMTXXXXXXXXXXXXXXVARRRLSGNTEP*SMVMP 933
TSASLSDMT VARRRLSGN EP*SMVMP
Sbjct: 123 TSASLSDMTARRSSWNSASMSSCVARRRLSGNAEP*SMVMP 1
Score = 52.4 bits (108), Expect(3) = 1e-028
Identities = 22/22 (100%), Positives = 22/22 (100%)
Frame = +3 / -1
Query: 654 EVRGEGAVQALGHVEVDGRLLA 719
EVRGEGAVQALGHVEVDGRLLA
Sbjct: 277 EVRGEGAVQALGHVEVDGRLLA 212
Score = 22.6 bits (43), Expect(3) = 1e-070
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +2 / -3
Query: 350 PAPCSRGC 373
P PCSRGC
Sbjct: 581 P*PCSRGC 558
>gb|BZ349897.1|BZ349897 hr47a12.g1 WGS-SbicolorF (JM107 adapted methyl filtered) Sorghum
bicolor genomic clone hr47a12 5', DNA sequence
Length = 600
Score = 284 bits (614), Expect(2) = e-108
Identities = 109/117 (93%), Positives = 110/117 (94%)
Frame = -1 / -1
Query: 1853 GHAVSRDLIRWRRLPLAMVPDQWYDTNGVWTGSATTLPDGRLAMLYRGSTNASVQVQCLA 1674
GHAVSRDLI WR LPLAMVPDQWYDTNGVWTGSATTLPDGRLAMLY GSTNASVQVQCLA
Sbjct: 552 GHAVSRDLIHWRHLPLAMVPDQWYDTNGVWTGSATTLPDGRLAMLYTGSTNASVQVQCLA 373
Query: 1673 VPADDADPLLTNWTKYEGNPVLYPPPGIGPKDFRDPTTVWIDPSDGAWRVVIGSKDD 1503
VPADDADPLLTNWTKYEGNPVLYPPPGIGPKDFRDPTT W DPSD WR+VIGSKDD
Sbjct: 372 VPADDADPLLTNWTKYEGNPVLYPPPGIGPKDFRDPTTAWFDPSDNTWRIVIGSKDD 202
Score = 194 bits (418), Expect(2) = 2e-076
Identities = 86/108 (79%), Positives = 88/108 (81%)
Frame = +3 / +1
Query: 1530 PCAVRGVDPDRGGVAEVLGPDARGRVQHRVALVLGPVGEQRVGVVGGHGQALHLDGGVGG 1709
P VR V+P RGGV EVLGPD R RVQ RVALVLGPVGEQRVGVVGG G+ALHL GGVGG
Sbjct: 229 PGVVRRVEPRRGGVTEVLGPDPRRRVQDRVALVLGPVGEQRVGVVGGDGEALHLHGGVGG 408
Query: 1710 APVEHCEAAVGERGGGPRPHAVGVVPLVGHHGQREAAPADQVAGHGVA 1853
A VEH EAAVGERGGG P AVGVVPLV HHG RE AP DQVAG GVA
Sbjct: 409 AGVEHGEAAVGERGGGACPDAVGVVPLVRHHG*REVAPVDQVAGDGVA 552
Score = 193 bits (417), Expect(2) = 4e-056
Identities = 82/118 (69%), Positives = 90/118 (76%)
Frame = +1 / +2
Query: 1501 SSSLEPMTTRHAPSEGSIQTVVGSRKSLGPMPGGGYSTGLPSYLVQLVXXXXXXXXXTAR 1680
+SSL+PMT R S+GS VVGSRKSLGP+PGGGY TGLPSYLVQLV TAR
Sbjct: 200 ASSLDPMTMRQVLSDGSNHAVVGSRKSLGPIPGGGYRTGLPSYLVQLVSSGSASSAGTAR 379
Query: 1681 HCTWTEALVEPL*SIARRPSGSVVADPVHTPLVSYHWSGTMASGXXXXXXXXXDTAWP 1854
HCT TEALVEP+*S+ARRPSGSVVA+PV TPLVSYHWSGTMASG +TAWP
Sbjct: 380 HCTCTEALVEPV*SMARRPSGSVVAEPVQTPLVSYHWSGTMASGRWRQWIRSRETAWP 553
Score = 129 bits (277), Expect(2) = e-108
Identities = 52/63 (82%), Positives = 54/63 (85%)
Frame = -1 / -1
Query: 1496 HAGIAVVYRTTDLVHFELLPGLLHRVDGTGMWECIDFYPVATRGRASANGVDMSDAIASN 1317
HAGIAVVYRT D V FELLPGLLHRV TGMWECIDFYPVATRG+AS NGVDMSDA N
Sbjct: 189 HAGIAVVYRTKDFVSFELLPGLLHRVARTGMWECIDFYPVATRGKASGNGVDMSDAFGKN 10
Query: 1316 GAV 1308
GA+
Sbjct: 9 GAI 1
Score = 117 bits (250), Expect(2) = 1e-038
Identities = 47/58 (81%), Positives = 48/58 (82%)
Frame = -2 / -2
Query: 1852 ATPCPAT*SAGAASRWPWCPTSGTTPTACGRGPPPRSPTAASQCSTGAPPTPPSRCSA 1679
ATP PAT*S GA SR PWC TSGTTPTA G+ PPPRSPTAAS CST APPTPP RCSA
Sbjct: 551 ATPSPAT*STGATSR*PWCRTSGTTPTASGQAPPPRSPTAASPCSTPAPPTPPCRCSA 378
Score = 115 bits (245), Expect(2) = 2e-076
Identities = 50/66 (75%), Positives = 55/66 (83%)
Frame = +1 / +2
Query: 1312 APLLAMASDMSTPLADALPRVATG*KSMHSHMPVPSTRCSRPGRSSKCTRSVVR*TTAMP 1491
AP L ASDMSTP DALPRVATG*KSMHSH+PV +TR RPGRSSK T+S+VR*TTAMP
Sbjct: 5 APFLPKASDMSTPFPDALPRVATG*KSMHSHIPVLATRWRRPGRSSKLTKSLVR*TTAMP 184
Query: 1492 AWPSSS 1509
AW S+
Sbjct: 185 AWSPSA 202
Score = 65.2 bits (136), Expect(2) = 1e-038
Identities = 25/30 (83%), Positives = 26/30 (86%)
Frame = -3 / -3
Query: 1644 HQLDQVRGQPGAVPAPGHRAQGLPRPHHGL 1555
HQLDQVRGQPG VPA G RAQGLP PHHG+
Sbjct: 343 HQLDQVRGQPGPVPAAGDRAQGLP*PHHGV 254
Score = 47.3 bits (97), Expect(2) = 4e-056
Identities = 21/34 (61%), Positives = 25/34 (73%)
Frame = +3 / +1
Query: 1359 RPASCGDGVEVDALPHAGAVDAVQQAREELEVHQ 1460
R A+ GDGVEVDALPH DAV++A EELE +
Sbjct: 52 RLAAGGDGVEVDALPHPRPRDAVEEAGEELEADE 153
>gb|BE361549.1|BE361549 DG1_81_H04.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 551
Score = 348 bits (754), Expect(2) = e-103
Identities = 137/155 (88%), Positives = 142/155 (91%)
Frame = -1 / +3
Query: 1496 HAGIAVVYRTTDLVHFELLPGLLHRVDGTGMWECIDFYPVATRGRASANGVDMSDAIASN 1317
HAGIAVVYRT D V FELLPGLLHRV TGMWECIDFYPVATRG+AS NGVDMSDA N
Sbjct: 87 HAGIAVVYRTKDFVSFELLPGLLHRVARTGMWECIDFYPVATRGKASGNGVDMSDAFGKN 266
Query: 1316 GAVAGDVLHVMKASMDDDRHDYYALGRYDAAANAWTPIDAGRDVGIGLRYDWGKFYASKT 1137
GA+ GDV+HVMKASMDDDRHDYYALGRYDAA N WTP+DA +DVGIGLRYDWGKFYASKT
Sbjct: 267 GAIVGDVVHVMKASMDDDRHDYYALGRYDAATNEWTPLDAEKDVGIGLRYDWGKFYASKT 446
Query: 1136 FYDPAKRRRVLWGWVGETDSERADVSKGWASLQGI 1032
FYDPAKRRRVLWGWVGETDSERADVSKGWASLQGI
Sbjct: 447 FYDPAKRRRVLWGWVGETDSERADVSKGWASLQGI 551
Score = 137 bits (293), Expect(3) = 2e-063
Identities = 59/79 (74%), Positives = 65/79 (82%)
Frame = +1 / -2
Query: 1273 MLAFMTCRTSPATAPLLAMASDMSTPLADALPRVATG*KSMHSHMPVPSTRCSRPGRSSK 1452
MLAF+TC TSP AP L ASDMSTP DALPRVATG*KSMHSH+PV +TR RPGRSSK
Sbjct: 310 MLAFITCTTSPTMAPFLPKASDMSTPFPDALPRVATG*KSMHSHIPVLATRWRRPGRSSK 131
Query: 1453 CTRSVVR*TTAMPAWPSSS 1509
T+S+VR*TTAMPAW S+
Sbjct: 130 LTKSLVR*TTAMPAWSPSA 74
Score = 116 bits (249), Expect(3) = 2e-063
Identities = 51/60 (85%), Positives = 53/60 (88%)
Frame = +1 / -2
Query: 1033 IPCSDAHPLDTSARSESVSPTHPHSTRRRLAGS*NVLDA*NLPQS*RRPMPTSLPASIGV 1212
IPC+DAHPL+TSARSESVSPTHP STRRRLAGS* VLDA*NLPQS R PMPTS AS GV
Sbjct: 550 IPCNDAHPLETSARSESVSPTHPQSTRRRLAGS*KVLDA*NLPQSYRSPMPTSFSASSGV 371
Score = 82.6 bits (174), Expect(3) = 1e-022
Identities = 31/41 (75%), Positives = 32/41 (78%)
Frame = +2 / -3
Query: 1034 YPAATPIPWTRPRAPSLSRRPIPTARGGAWPGRRTSWTRRT 1156
YPA PIPW R RAPS SRRPIP ARGGAW G R SWTR+T
Sbjct: 549 YPATMPIPWRRQRAPSRSRRPIPRARGGAWRGHRRSWTRKT 427
Score = 51.0 bits (105), Expect(2) = e-103
Identities = 17/22 (77%), Positives = 18/22 (81%)
Frame = -1 / +3
Query: 1568 PTTVWIDPSDGAWRVVIGSKDD 1503
PTT W DPSD WR+VIGSKDD
Sbjct: 9 PTTAWFDPSDNTWRIVIGSKDD 74
Score = 47.3 bits (97), Expect(3) = 1e-022
Identities = 21/34 (61%), Positives = 25/34 (73%)
Frame = +3 / -1
Query: 1359 RPASCGDGVEVDALPHAGAVDAVQQAREELEVHQ 1460
R A+ GDGVEVDALPH DAV++A EELE +
Sbjct: 224 RLAAGGDGVEVDALPHPRPRDAVEEAGEELEADE 123
Score = 30.4 bits (60), Expect(3) = 2e-063
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1 / -2
Query: 1501 SSSLEPMTTRHAPSEGSIQTVVG 1569
+SSL+PMT R S+GS VVG
Sbjct: 76 ASSLDPMTMRQVLSDGSNHAVVG 8
Score = 21.7 bits (41), Expect(3) = 1e-022
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +2 / -3
Query: 1274 CWPS*RA 1294
CWPS*RA
Sbjct: 309 CWPS*RA 289
>gb|CW200491.1|CW200491 104_626_11184087_116_36869_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11184087, DNA
sequence
Length = 705
Score = 146 bits (313), Expect(4) = 2e-091
Identities = 59/87 (67%), Positives = 64/87 (73%)
Frame = -1 / -2
Query: 1799 VPDQWYDTNGVWTGSATTLPDGRLAMLYRGSTNASVQVQCLAVPADDADPLLTNWTKYEG 1620
VPD YD NGVW+GSAT LPDGR+ MLY GST SVQVQ LA PAD +DPLL W K +
Sbjct: 704 VPDHPYDANGVWSGSATRLPDGRIVMLYTGSTAESVQVQNLAEPADASDPLLREWVKSDA 525
Query: 1619 NPVLYPPPGIGPKDFRDPTTVWIDPSD 1539
NPVL PPPGIG DFRDPTT W +D
Sbjct: 524 NPVLVPPPGIGATDFRDPTTAWRAAND 444
Score = 144 bits (308), Expect(4) = 2e-091
Identities = 53/70 (75%), Positives = 60/70 (85%)
Frame = -1 / -2
Query: 1298 VLHVMKASMDDDRHDYYALGRYDAAANAWTPIDAGRDVGIGLRYDWGKFYASKTFYDPAK 1119
V HV+KAS+DDD+HDYYA+G YD A + WTP DA DVGIGLRYD+GK+YASKTFYDP
Sbjct: 212 VKHVVKASLDDDKHDYYAIGTYDPATDTWTPDDAENDVGIGLRYDYGKYYASKTFYDPVL 33
Query: 1118 RRRVLWGWVG 1089
RRRVLWGWVG
Sbjct: 32 RRRVLWGWVG 3
Score = 98.2 bits (208), Expect(4) = 7e-045
Identities = 46/80 (57%), Positives = 52/80 (65%)
Frame = +1 / +1
Query: 1561 VVGSRKSLGPMPGGGYSTGLPSYLVQLVXXXXXXXXXTARHCTWTEALVEPL*SIARRPS 1740
VVGSRKS+ PMPGGG STGL S L +AR CT T++ VEP+*S+ RPS
Sbjct: 466 VVGSRKSVAPMPGGGTSTGLASDLTHSRSSGSDASAGSARFCTCTDSAVEPV*SMTIRPS 645
Query: 1741 GSVVADPVHTPLVSYHWSGT 1800
GS VADP TPL SY SGT
Sbjct: 646 GSRVADPDQTPLASYG*SGT 705
Score = 86.8 bits (183), Expect(3) = 7e-025
Identities = 46/87 (52%), Positives = 53/87 (60%)
Frame = +3 / +3
Query: 1539 VRGVDPDRGGVAEVLGPDARGRVQHRVALVLGPVGEQRVGVVGGHGQALHLDGGVGGAPV 1718
V G P R VAEV PDAR R QHRV + L P+ +QRV VGG + LHL GA V
Sbjct: 444 VVGRPPRRRRVAEVRRPDARRRHQHRVGVRLDPLPQQRVRRVGGLREVLHLHRLRRGARV 623
Query: 1719 EHCEAAVGERGGGPRPHAVGVVPLVGH 1799
EH + AV E GG RP AVGVV ++ H
Sbjct: 624 EHDDPAVREPRGGSRPDAVGVVRVIRH 704
Score = 79.0 bits (166), Expect(4) = 2e-091
Identities = 28/44 (63%), Positives = 35/44 (79%)
Frame = -1 / -2
Query: 1505 DDGHAGIAVVYRTTDLVHFELLPGLLHRVDGTGMWECIDFYPVA 1374
D HAG+A+VYRT D V ++ +P L+H V GTGMWEC+DFYPVA
Sbjct: 398 DRDHAGLALVYRTEDFVRYDPVPALMHVVPGTGMWECVDFYPVA 267
Score = 62.9 bits (131), Expect(4) = 7e-045
Identities = 30/42 (71%), Positives = 31/42 (73%)
Frame = +1 / +1
Query: 1087 SPTHPHSTRRRLAGS*NVLDA*NLPQS*RRPMPTSLPASIGV 1212
SPTHP STRRR GS* VLDA* LP S R P+PTS AS GV
Sbjct: 1 SPTHPQSTRRRSTGS*KVLDA*YLP*SYRSPIPTSFSASSGV 126
Score = 62.0 bits (129), Expect(4) = 7e-045
Identities = 28/48 (58%), Positives = 30/48 (62%)
Frame = +1 / +1
Query: 1363 LPRVATG*KSMHSHMPVPSTRCSRPGRSSKCTRSVVR*TTAMPAWPSS 1506
L ATG*KS HSHMPVP T C G S T+S VR T+A PAW S
Sbjct: 256 LAATATG*KSTHSHMPVPGTTCISAGTGSYRTKSSVRYTSARPAWSRS 399
Score = 39.6 bits (80), Expect(3) = 7e-025
Identities = 17/29 (58%), Positives = 19/29 (65%)
Frame = +3 / +3
Query: 1374 GDGVEVDALPHAGAVDAVQQAREELEVHQ 1460
G VEVDALPHAGA D V Q R + H+
Sbjct: 267 GHRVEVDALPHAGAGDDVHQRRHRVVPHE 353
Score = 34.1 bits (68), Expect(3) = 7e-025
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = +2 / +2
Query: 1088 RRPIPTARGGAWPGRRTSWTRRT 1156
RRP P A G GRR SWTR T
Sbjct: 2 RRPTPRAPAGEARGRRRSWTRST 70
Score = 27.6 bits (54), Expect(4) = 2e-091
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -1 / -2
Query: 1544 SDGAWRVVIGSKDDD 1500
S AWRV IGSKD D
Sbjct: 434 SKQAWRVAIGSKDRD 390
Score = 24.4 bits (47), Expect(4) = 7e-045
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +1 / +1
Query: 1501 SSSLEPMTTRHA 1536
S SL+PM TRHA
Sbjct: 391 SRSLDPMATRHA 426
>gb|BG558451.1|BG558451 RHIZ2_67_F11.b1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 459
Score = 207 bits (446), Expect(2) = 1e-082
Identities = 80/86 (93%), Positives = 81/86 (94%)
Frame = -1 / +3
Query: 1760 GSATTLPDGRLAMLYRGSTNASVQVQCLAVPADDADPLLTNWTKYEGNPVLYPPPGIGPK 1581
GSATTLPDGRLAMLY GSTNASVQVQCLAVPADDADPLLTNWTKYEGNPVLYPPPGIGPK
Sbjct: 9 GSATTLPDGRLAMLYTGSTNASVQVQCLAVPADDADPLLTNWTKYEGNPVLYPPPGIGPK 188
Query: 1580 DFRDPTTVWIDPSDGAWRVVIGSKDD 1503
DFRDPTT W DPSD WR+VIGSKDD
Sbjct: 189 DFRDPTTAWFDPSDNTWRIVIGSKDD 266
Score = 145 bits (311), Expect(2) = 3e-060
Identities = 62/88 (70%), Positives = 70/88 (79%)
Frame = +1 / -3
Query: 1501 SSSLEPMTTRHAPSEGSIQTVVGSRKSLGPMPGGGYSTGLPSYLVQLVXXXXXXXXXTAR 1680
+SSL+PMT R S+GS VVGSRKSLGP+PGGGY TGLPSYLVQLV TAR
Sbjct: 268 ASSLDPMTMRQVLSDGSNHAVVGSRKSLGPIPGGGYRTGLPSYLVQLVSSGSASSAGTAR 89
Query: 1681 HCTWTEALVEPL*SIARRPSGSVVADPV 1764
HCT TEALVEP+*S+ARRPSGSVVA+P+
Sbjct: 88 HCTCTEALVEPV*SMARRPSGSVVAEPL 5
Score = 142 bits (304), Expect(2) = 3e-041
Identities = 62/76 (81%), Positives = 64/76 (84%)
Frame = +3 / -2
Query: 1530 PCAVRGVDPDRGGVAEVLGPDARGRVQHRVALVLGPVGEQRVGVVGGHGQALHLDGGVGG 1709
P VR V+P RGGV EVLGPD R RVQ RVALVLGPVGEQRVGVVGG G+ALHL GGVGG
Sbjct: 239 PGVVRRVEPRRGGVTEVLGPDPRRRVQDRVALVLGPVGEQRVGVVGGDGEALHLHGGVGG 60
Query: 1710 APVEHCEAAVGERGGG 1757
A VEH EAAVGERGGG
Sbjct: 59 AGVEHGEAAVGERGGG 12
Score = 122 bits (262), Expect(2) = 1e-082
Identities = 49/60 (81%), Positives = 51/60 (85%)
Frame = -1 / +3
Query: 1496 HAGIAVVYRTTDLVHFELLPGLLHRVDGTGMWECIDFYPVATRGRASANGVDMSDAIASN 1317
HAGIAVVYRT D V FELLPG+LHRV TGMWECIDFYPVATRG+AS NGVDMSDA N
Sbjct: 279 HAGIAVVYRTKDFVSFELLPGMLHRVARTGMWECIDFYPVATRGKASGNGVDMSDAFGKN 458
Score = 109 bits (233), Expect(2) = 3e-060
Identities = 48/63 (76%), Positives = 53/63 (84%)
Frame = +1 / -3
Query: 1321 LAMASDMSTPLADALPRVATG*KSMHSHMPVPSTRCSRPGRSSKCTRSVVR*TTAMPAWP 1500
L ASDMSTP DALPRVATG*KSMHSH+PV +TR S PGRSSK T+S+VR*TTAMPAW
Sbjct: 454 LPKASDMSTPFPDALPRVATG*KSMHSHIPVLATRWSMPGRSSKLTKSLVR*TTAMPAWS 275
Query: 1501 SSS 1509
S+
Sbjct: 274 PSA 266
Score = 65.2 bits (136), Expect(2) = 8e-022
Identities = 25/30 (83%), Positives = 26/30 (86%)
Frame = -3 / +2
Query: 1644 HQLDQVRGQPGAVPAPGHRAQGLPRPHHGL 1555
HQLDQVRGQPG VPA G RAQGLP PHHG+
Sbjct: 125 HQLDQVRGQPGPVPAAGDRAQGLP*PHHGV 214
Score = 61.1 bits (127), Expect(2) = 8e-022
Identities = 23/26 (88%), Positives = 23/26 (88%)
Frame = -2 / +1
Query: 1756 PPPRSPTAASQCSTGAPPTPPSRCSA 1679
PPPRSPTAAS CST APPTPP RCSA
Sbjct: 13 PPPRSPTAASPCSTPAPPTPPCRCSA 90
Score = 49.6 bits (102), Expect(2) = 3e-041
Identities = 22/34 (64%), Positives = 25/34 (73%)
Frame = +3 / -2
Query: 1359 RPASCGDGVEVDALPHAGAVDAVQQAREELEVHQ 1460
R A+ GDGVEVDALPH DAV+ AREELE +
Sbjct: 416 RLAAGGDGVEVDALPHPRPRDAVEHAREELEADE 315
>gb|CW384798.1|CW384798 fsbb001f067p17f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f067p17, DNA
sequence
Length = 599
Score = 284 bits (614), Expect = 4e-075
Identities = 109/117 (93%), Positives = 110/117 (94%)
Frame = -1 / +3
Query: 1853 GHAVSRDLIRWRRLPLAMVPDQWYDTNGVWTGSATTLPDGRLAMLYRGSTNASVQVQCLA 1674
GHAVSRDLI WR LPLAMVPDQWYDTNGVWTGSATTLPDGRLAMLY GSTNASVQVQCLA
Sbjct: 222 GHAVSRDLIHWRHLPLAMVPDQWYDTNGVWTGSATTLPDGRLAMLYTGSTNASVQVQCLA 401
Query: 1673 VPADDADPLLTNWTKYEGNPVLYPPPGIGPKDFRDPTTVWIDPSDGAWRVVIGSKDD 1503
VPADDADPLLTNWTKYEGNPVLYPPPGIGPKDFRDPTT W DPSD WR+VIGSKDD
Sbjct: 402 VPADDADPLLTNWTKYEGNPVLYPPPGIGPKDFRDPTTAWFDPSDNTWRIVIGSKDD 572
Score = 194 bits (418), Expect = 4e-048
Identities = 86/108 (79%), Positives = 88/108 (81%)
Frame = +3 / -1
Query: 1530 PCAVRGVDPDRGGVAEVLGPDARGRVQHRVALVLGPVGEQRVGVVGGHGQALHLDGGVGG 1709
P VR V+P RGGV EVLGPD R RVQ RVALVLGPVGEQRVGVVGG G+ALHL GGVGG
Sbjct: 545 PGVVRRVEPRRGGVTEVLGPDPRRRVQDRVALVLGPVGEQRVGVVGGDGEALHLHGGVGG 366
Query: 1710 APVEHCEAAVGERGGGPRPHAVGVVPLVGHHGQREAAPADQVAGHGVA 1853
A VEH EAAVGERGGG P AVGVVPLV HHG RE AP DQVAG GVA
Sbjct: 365 AGVEHGEAAVGERGGGACPDAVGVVPLVRHHG*REVAPVDQVAGDGVA 222
Score = 193 bits (417), Expect = 5e-048
Identities = 82/118 (69%), Positives = 90/118 (76%)
Frame = +1 / -2
Query: 1501 SSSLEPMTTRHAPSEGSIQTVVGSRKSLGPMPGGGYSTGLPSYLVQLVXXXXXXXXXTAR 1680
+SSL+PMT R S+GS VVGSRKSLGP+PGGGY TGLPSYLVQLV TAR
Sbjct: 574 ASSLDPMTMRQVLSDGSNHAVVGSRKSLGPIPGGGYRTGLPSYLVQLVSSGSASSAGTAR 395
Query: 1681 HCTWTEALVEPL*SIARRPSGSVVADPVHTPLVSYHWSGTMASGXXXXXXXXXDTAWP 1854
HCT TEALVEP+*S+ARRPSGSVVA+PV TPLVSYHWSGTMASG +TAWP
Sbjct: 394 HCTCTEALVEPV*SMARRPSGSVVAEPVQTPLVSYHWSGTMASGRWRQWIRSRETAWP 221
Score = 117 bits (250), Expect(2) = 1e-038
Identities = 47/58 (81%), Positives = 48/58 (82%)
Frame = -2 / +1
Query: 1852 ATPCPAT*SAGAASRWPWCPTSGTTPTACGRGPPPRSPTAASQCSTGAPPTPPSRCSA 1679
ATP PAT*S GA SR PWC TSGTTPTA G+ PPPRSPTAAS CST APPTPP RCSA
Sbjct: 223 ATPSPAT*STGATSR*PWCRTSGTTPTASGQAPPPRSPTAASPCSTPAPPTPPCRCSA 396
Score = 65.2 bits (136), Expect(2) = 1e-038
Identities = 25/30 (83%), Positives = 26/30 (86%)
Frame = -3 / +2
Query: 1644 HQLDQVRGQPGAVPAPGHRAQGLPRPHHGL 1555
HQLDQVRGQPG VPA G RAQGLP PHHG+
Sbjct: 431 HQLDQVRGQPGPVPAAGDRAQGLP*PHHGV 520
>gb|CW257600.1|CW257600 104_723_11227424_148_35157_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11227424, DNA
sequence
Length = 678
Score = 179 bits (385), Expect(4) = 2e-067
Identities = 67/87 (77%), Positives = 76/87 (87%)
Frame = -1 / -3
Query: 1298 VLHVMKASMDDDRHDYYALGRYDAAANAWTPIDAGRDVGIGLRYDWGKFYASKTFYDPAK 1119
V HV+KAS+DDD+HDYYA+G YD A + WTP DA DVGIGLRYD+GK+YASKTFYDP
Sbjct: 391 VKHVVKASLDDDKHDYYAIGTYDPATDTWTPDDAENDVGIGLRYDYGKYYASKTFYDPVL 212
Query: 1118 RRRVLWGWVGETDSERADVSKGWASLQ 1038
RRRVLWGWVGETDSERAD+ KGWAS+Q
Sbjct: 211 RRRVLWGWVGETDSERADILKGWASVQ 131
Score = 85.8 bits (181), Expect(4) = 9e-030
Identities = 41/58 (70%), Positives = 43/58 (74%)
Frame = +1 / +3
Query: 1039 CSDAHPLDTSARSESVSPTHPHSTRRRLAGS*NVLDA*NLPQS*RRPMPTSLPASIGV 1212
C+DA PL SARS SVSPTHP STRRR GS* VLDA* LP S R P+PTS AS GV
Sbjct: 132 CTDAQPLRMSARSLSVSPTHPQSTRRRSTGS*KVLDA*YLP*SYRSPIPTSFSASSGV 305
Score = 79.0 bits (166), Expect(4) = 2e-067
Identities = 28/44 (63%), Positives = 35/44 (79%)
Frame = -1 / -3
Query: 1505 DDGHAGIAVVYRTTDLVHFELLPGLLHRVDGTGMWECIDFYPVA 1374
D HAG+A+VYRT D V ++ +P L+H V GTGMWEC+DFYPVA
Sbjct: 577 DRDHAGLALVYRTEDFVRYDPVPALMHVVPGTGMWECVDFYPVA 446
Score = 62.0 bits (129), Expect(4) = 9e-030
Identities = 28/48 (58%), Positives = 30/48 (62%)
Frame = +1 / +3
Query: 1363 LPRVATG*KSMHSHMPVPSTRCSRPGRSSKCTRSVVR*TTAMPAWPSS 1506
L ATG*KS HSHMPVP T C G S T+S VR T+A PAW S
Sbjct: 435 LAATATG*KSTHSHMPVPGTTCISAGTGSYRTKSSVRYTSARPAWSRS 578
Score = 30.4 bits (60), Expect(4) = 2e-067
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -1 / -3
Query: 1592 IGPKDFRDPTTVWIDPSD 1539
IG DFRDPTT W +D
Sbjct: 676 IGATDFRDPTTAWRAAND 623
Score = 27.6 bits (54), Expect(4) = 2e-067
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -1 / -3
Query: 1544 SDGAWRVVIGSKDDD 1500
S AWRV IGSKD D
Sbjct: 613 SKQAWRVAIGSKDRD 569
Score = 24.4 bits (47), Expect(4) = 9e-030
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +1 / +3
Query: 1501 SSSLEPMTTRHA 1536
S SL+PM TRHA
Sbjct: 570 SRSLDPMATRHA 605
Score = 23.5 bits (45), Expect(4) = 9e-030
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +1 / +3
Query: 1561 VVGSRKSLGPM 1593
VVGSRKS+ PM
Sbjct: 645 VVGSRKSVAPM 677
>gb|CW200492.1|CW200492 104_626_11184087_148_36870_064 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11184087, DNA
sequence
Length = 704
Score = 181 bits (389), Expect(3) = 2e-064
Identities = 73/105 (69%), Positives = 79/105 (75%)
Frame = -1 / +1
Query: 1853 GHAVSRDLIRWRRLPLAMVPDQWYDTNGVWTGSATTLPDGRLAMLYRGSTNASVQVQCLA 1674
GHAVSRDL+ W LPLAMVPD YD NGVW+GSAT LPDGR+ MLY GST SVQVQ LA
Sbjct: 130 GHAVSRDLLHWLHLPLAMVPDHPYDANGVWSGSATRLPDGRIVMLYTGSTAESVQVQNLA 309
Query: 1673 VPADDADPLLTNWTKYEGNPVLYPPPGIGPKDFRDPTTVWIDPSD 1539
PAD +DPLL W K + NPVL PPPGIG DFRDPTT W +D
Sbjct: 310 EPADASDPLLREWVKSDANPVLVPPPGIGATDFRDPTTAWRAAND 444
Score = 118 bits (252), Expect(3) = 9e-040
Identities = 55/100 (55%), Positives = 62/100 (62%)
Frame = +1 / -1
Query: 1561 VVGSRKSLGPMPGGGYSTGLPSYLVQLVXXXXXXXXXTARHCTWTEALVEPL*SIARRPS 1740
VVGSRKS+ PMPGGG STGL S L +AR CT T++ VEP+*S+ RPS
Sbjct: 422 VVGSRKSVAPMPGGGTSTGLASDLTHSRSSGSDASAGSARFCTCTDSAVEPV*SMTIRPS 243
Query: 1741 GSVVADPVHTPLVSYHWSGTMASGXXXXXXXXXDTAWPLI 1860
GS VADP TPL SY SGTMASG DTAWP +
Sbjct: 242 GSRVADPDQTPLASYG*SGTMASGRCSQWRRSRDTAWPQV 123
Score = 113 bits (241), Expect(2) = 1e-029
Identities = 57/105 (54%), Positives = 66/105 (62%)
Frame = +3 / -3
Query: 1539 VRGVDPDRGGVAEVLGPDARGRVQHRVALVLGPVGEQRVGVVGGHGQALHLDGGVGGAPV 1718
V G P R VAEV PDAR R QHRV + L P+ +QRV VGG + LHL GA V
Sbjct: 444 VVGRPPRRRRVAEVRRPDARRRHQHRVGVRLDPLPQQRVRRVGGLREVLHLHRLRRGARV 265
Query: 1719 EHCEAAVGERGGGPRPHAVGVVPLVGHHGQREAAPADQVAGHGVA 1853
EH + AV E GG RP AVGVV ++ HHGQR P ++VA HGVA
Sbjct: 264 EHDDPAVREPRGGSRPDAVGVVRVIRHHGQR*VQPVEEVARHGVA 130
Score = 79.0 bits (166), Expect(3) = 2e-064
Identities = 28/44 (63%), Positives = 35/44 (79%)
Frame = -1 / +1
Query: 1505 DDGHAGIAVVYRTTDLVHFELLPGLLHRVDGTGMWECIDFYPVA 1374
D HAG+A+VYRT D V ++ +P L+H V GTGMWEC+DFYPVA
Sbjct: 490 DRDHAGLALVYRTEDFVRYDPVPALMHVVPGTGMWECVDFYPVA 621
Score = 62.0 bits (129), Expect(3) = 9e-040
Identities = 28/48 (58%), Positives = 30/48 (62%)
Frame = +1 / -1
Query: 1363 LPRVATG*KSMHSHMPVPSTRCSRPGRSSKCTRSVVR*TTAMPAWPSS 1506
L ATG*KS HSHMPVP T C G S T+S VR T+A PAW S
Sbjct: 632 LAATATG*KSTHSHMPVPGTTCISAGTGSYRTKSSVRYTSARPAWSRS 489
Score = 39.6 bits (80), Expect(2) = 1e-029
Identities = 17/29 (58%), Positives = 19/29 (65%)
Frame = +3 / -3
Query: 1374 GDGVEVDALPHAGAVDAVQQAREELEVHQ 1460
G VEVDALPHAGA D V Q R + H+
Sbjct: 621 GHRVEVDALPHAGAGDDVHQRRHRVVPHE 535
Score = 27.6 bits (54), Expect(3) = 2e-064
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -1 / +1
Query: 1544 SDGAWRVVIGSKDDD 1500
S AWRV IGSKD D
Sbjct: 454 SKQAWRVAIGSKDRD 498
Score = 24.4 bits (47), Expect(3) = 9e-040
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +1 / -1
Query: 1501 SSSLEPMTTRHA 1536
S SL+PM TRHA
Sbjct: 497 SRSLDPMATRHA 462
>gb|CW169907.1|CW169907 104_580_11154918_148_36511_029 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11154918, DNA
sequence
Length = 578
Score = 181 bits (389), Expect(3) = 2e-064
Identities = 73/105 (69%), Positives = 79/105 (75%)
Frame = -1 / -1
Query: 1853 GHAVSRDLIRWRRLPLAMVPDQWYDTNGVWTGSATTLPDGRLAMLYRGSTNASVQVQCLA 1674
GHAVSRDL+ W LPLAMVPD YD NGVW+GSAT LPDGR+ MLY GST SVQVQ LA
Sbjct: 521 GHAVSRDLLHWLHLPLAMVPDHPYDANGVWSGSATRLPDGRIVMLYTGSTAESVQVQNLA 342
Query: 1673 VPADDADPLLTNWTKYEGNPVLYPPPGIGPKDFRDPTTVWIDPSD 1539
PAD +DPLL W K + NPVL PPPGIG DFRDPTT W +D
Sbjct: 341 EPADASDPLLREWVKSDANPVLVPPPGIGATDFRDPTTAWRAAND 207
Score = 118 bits (252), Expect(3) = 9e-040
Identities = 55/100 (55%), Positives = 62/100 (62%)
Frame = +1 / +1
Query: 1561 VVGSRKSLGPMPGGGYSTGLPSYLVQLVXXXXXXXXXTARHCTWTEALVEPL*SIARRPS 1740
VVGSRKS+ PMPGGG STGL S L +AR CT T++ VEP+*S+ RPS
Sbjct: 229 VVGSRKSVAPMPGGGTSTGLASDLTHSRSSGSDASAGSARFCTCTDSAVEPV*SMTIRPS 408
Query: 1741 GSVVADPVHTPLVSYHWSGTMASGXXXXXXXXXDTAWPLI 1860
GS VADP TPL SY SGTMASG DTAWP +
Sbjct: 409 GSRVADPDQTPLASYG*SGTMASGRCSQWRRSRDTAWPQV 528
Score = 113 bits (241), Expect(2) = 1e-029
Identities = 57/105 (54%), Positives = 66/105 (62%)
Frame = +3 / +3
Query: 1539 VRGVDPDRGGVAEVLGPDARGRVQHRVALVLGPVGEQRVGVVGGHGQALHLDGGVGGAPV 1718
V G P R VAEV PDAR R QHRV + L P+ +QRV VGG + LHL GA V
Sbjct: 207 VVGRPPRRRRVAEVRRPDARRRHQHRVGVRLDPLPQQRVRRVGGLREVLHLHRLRRGARV 386
Query: 1719 EHCEAAVGERGGGPRPHAVGVVPLVGHHGQREAAPADQVAGHGVA 1853
EH + AV E GG RP AVGVV ++ HHGQR P ++VA HGVA
Sbjct: 387 EHDDPAVREPRGGSRPDAVGVVRVIRHHGQR*VQPVEEVARHGVA 521
Score = 79.0 bits (166), Expect(3) = 2e-064
Identities = 28/44 (63%), Positives = 35/44 (79%)
Frame = -1 / -1
Query: 1505 DDGHAGIAVVYRTTDLVHFELLPGLLHRVDGTGMWECIDFYPVA 1374
D HAG+A+VYRT D V ++ +P L+H V GTGMWEC+DFYPVA
Sbjct: 161 DRDHAGLALVYRTEDFVRYDPVPALMHVVPGTGMWECVDFYPVA 30
Score = 62.0 bits (129), Expect(3) = 9e-040
Identities = 28/48 (58%), Positives = 30/48 (62%)
Frame = +1 / +1
Query: 1363 LPRVATG*KSMHSHMPVPSTRCSRPGRSSKCTRSVVR*TTAMPAWPSS 1506
L ATG*KS HSHMPVP T C G S T+S VR T+A PAW S
Sbjct: 19 LAATATG*KSTHSHMPVPGTTCISAGTGSYRTKSSVRYTSARPAWSRS 162
Score = 39.6 bits (80), Expect(2) = 1e-029
Identities = 17/29 (58%), Positives = 19/29 (65%)
Frame = +3 / +3
Query: 1374 GDGVEVDALPHAGAVDAVQQAREELEVHQ 1460
G VEVDALPHAGA D V Q R + H+
Sbjct: 30 GHRVEVDALPHAGAGDDVHQRRHRVVPHE 116
Score = 27.6 bits (54), Expect(3) = 2e-064
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -1 / -1
Query: 1544 SDGAWRVVIGSKDDD 1500
S AWRV IGSKD D
Sbjct: 197 SKQAWRVAIGSKDRD 153
Score = 24.4 bits (47), Expect(3) = 9e-040
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +1 / +1
Query: 1501 SSSLEPMTTRHA 1536
S SL+PM TRHA
Sbjct: 154 SRSLDPMATRHA 189
>gb|BF422253.1|BF422253 FM1_13_B02.b1_A003 Floral-Induced Meristem 1 (FM1) Sorghum propinquum
cDNA, mRNA sequence
Length = 377
Score = 215 bits (464), Expect(2) = 3e-061
Identities = 84/103 (81%), Positives = 90/103 (87%)
Frame = -1 / +2
Query: 1496 HAGIAVVYRTTDLVHFELLPGLLHRVDGTGMWECIDFYPVATRGRASANGVDMSDAIASN 1317
HAGIAVVYRT D V FELLPG+LHRV TGMWECIDFYPVATRG+AS NGVDMSDA N
Sbjct: 68 HAGIAVVYRTKDFVSFELLPGMLHRVARTGMWECIDFYPVATRGKASGNGVDMSDAFGKN 247
Query: 1316 GAVAGDVLHVMKASMDDDRHDYYALGRYDAAANAWTPIDAGRD 1188
GA+ GDV+HVMKASMDDDRHDYYALGRYDAA N WTP+DA +D
Sbjct: 248 GAIVGDVVHVMKASMDDDRHDYYALGRYDAATNEWTPLDAEKD 376
Score = 136 bits (292), Expect(2) = 2e-032
Identities = 59/79 (74%), Positives = 65/79 (82%)
Frame = +1 / -3
Query: 1273 MLAFMTCRTSPATAPLLAMASDMSTPLADALPRVATG*KSMHSHMPVPSTRCSRPGRSSK 1452
MLAF+TC TSP AP L ASDMSTP DALPRVATG*KSMHSH+PV +TR S PGRSSK
Sbjct: 291 MLAFITCTTSPTMAPFLPKASDMSTPFPDALPRVATG*KSMHSHIPVLATRWSMPGRSSK 112
Query: 1453 CTRSVVR*TTAMPAWPSSS 1509
T+S+VR*TTAMPAW S+
Sbjct: 111 LTKSLVR*TTAMPAWSPSA 55
Score = 43.2 bits (88), Expect(2) = 3e-061
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = -1 / +2
Query: 1556 WIDPSDGAWRVVIGSKDD 1503
W DPSD WR+VIGSKDD
Sbjct: 2 WFDPSDNTWRIVIGSKDD 55
Score = 25.4 bits (49), Expect(2) = 2e-032
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1 / -3
Query: 1501 SSSLEPMTTRHAPSEGS 1551
+SSL+PMT R S+GS
Sbjct: 57 ASSLDPMTMRQVLSDGS 7
>gb|CW099054.1|CW099054 104_465_11003344_148_34369_050 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11003344, DNA
sequence
Length = 359
Score = 234 bits (505), Expect = 4e-060
Identities = 99/104 (95%), Positives = 100/104 (96%)
Frame = -1 / -1
Query: 1043 LQGIPRTVLLDTKTGSNLLQWPVEEVETLRTNSTDLSGITIDYGSVFPLNLRRATQLDIE 864
+QGIPRTVLLDTKTGSNLLQWPVEE ETLRTNSTDLSGITIDYGS FPLNLRRATQLDIE
Sbjct: 314 VQGIPRTVLLDTKTGSNLLQWPVEEAETLRTNSTDLSGITIDYGSAFPLNLRRATQLDIE 135
Query: 863 AEFQLDRRAVMSLNEADVGYNCSTSGGAAGRGALGPFGLFVLAD 732
AEFQLDRRAVMSLNEADVGYNCSTSGGAA RGALGPFGL VLAD
Sbjct: 134 AEFQLDRRAVMSLNEADVGYNCSTSGGAAARGALGPFGLLVLAD 3
Score = 125 bits (268), Expect = 2e-027
Identities = 59/78 (75%), Positives = 60/78 (76%)
Frame = +1 / +1
Query: 811 TSASLSDMTXXXXXXXXXXXXXXVARRRLSGNTEP*SMVMPLRSVELVRSVSTSSTGH*S 990
TSASLSDMT VARRRLSGN EP*SMVMPLRSVELVRSVS SSTGH S
Sbjct: 82 TSASLSDMTARRSSWNSASMSSCVARRRLSGNAEP*SMVMPLRSVELVRSVSASSTGHCS 261
Query: 991 RLLPVLVSRSTVRGIPCS 1044
RLLPVLVS STVRGIPC+
Sbjct: 262 RLLPVLVSSSTVRGIPCT 315
Score = 120 bits (257), Expect = 6e-026
Identities = 56/103 (54%), Positives = 59/103 (57%)
Frame = +3 / +3
Query: 732 VGEDXXXXXXXXXXXXXXXXXXXXXXHVRLVERHDGAAVQLELRLDVQLGGAAEVEREHX 911
VGED HV LVERHDGAAV+LELRLDVQL GA EVERE
Sbjct: 3 VGEDEQAEGAEGTAGRGATARAAVVPHVGLVERHDGAAVELELRLDVQLRGAPEVERERR 182
Query: 912 XXXXXXXXXXXXXXXQRLHLLHGPLKQVAARLGVQEHRPGDTL 1040
QRL LHGPL+QVAARLGVQ+HRPGDTL
Sbjct: 183 AVVDGDAAEVRGVGAQRLRFLHGPLQQVAARLGVQQHRPGDTL 311
>gb|CW257599.1|CW257599 104_723_11227424_116_35161_030 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11227424, DNA
sequence
Length = 603
Score = 181 bits (389), Expect(3) = 6e-056
Identities = 73/105 (69%), Positives = 79/105 (75%)
Frame = -1 / +1
Query: 1853 GHAVSRDLIRWRRLPLAMVPDQWYDTNGVWTGSATTLPDGRLAMLYRGSTNASVQVQCLA 1674
GHAVSRDL+ W LPLAMVPD YD NGVW+GSAT LPDGR+ MLY GST SVQVQ LA
Sbjct: 142 GHAVSRDLLHWLHLPLAMVPDHPYDANGVWSGSATRLPDGRIVMLYTGSTAESVQVQNLA 321
Query: 1673 VPADDADPLLTNWTKYEGNPVLYPPPGIGPKDFRDPTTVWIDPSD 1539
PAD +DPLL W K + NPVL PPPGIG DFRDPTT W +D
Sbjct: 322 EPADASDPLLREWVKSDANPVLVPPPGIGATDFRDPTTAWRAAND 456
Score = 118 bits (252), Expect(3) = 2e-033
Identities = 55/100 (55%), Positives = 62/100 (62%)
Frame = +1 / -2
Query: 1561 VVGSRKSLGPMPGGGYSTGLPSYLVQLVXXXXXXXXXTARHCTWTEALVEPL*SIARRPS 1740
VVGSRKS+ PMPGGG STGL S L +AR CT T++ VEP+*S+ RPS
Sbjct: 434 VVGSRKSVAPMPGGGTSTGLASDLTHSRSSGSDASAGSARFCTCTDSAVEPV*SMTIRPS 255
Query: 1741 GSVVADPVHTPLVSYHWSGTMASGXXXXXXXXXDTAWPLI 1860
GS VADP TPL SY SGTMASG DTAWP +
Sbjct: 254 GSRVADPDQTPLASYG*SGTMASGRCSQWRRSRDTAWPQV 135
Score = 113 bits (241), Expect = 1e-023
Identities = 57/105 (54%), Positives = 66/105 (62%)
Frame = +3 / -1
Query: 1539 VRGVDPDRGGVAEVLGPDARGRVQHRVALVLGPVGEQRVGVVGGHGQALHLDGGVGGAPV 1718
V G P R VAEV PDAR R QHRV + L P+ +QRV VGG + LHL GA V
Sbjct: 456 VVGRPPRRRRVAEVRRPDARRRHQHRVGVRLDPLPQQRVRRVGGLREVLHLHRLRRGARV 277
Query: 1719 EHCEAAVGERGGGPRPHAVGVVPLVGHHGQREAAPADQVAGHGVA 1853
EH + AV E GG RP AVGVV ++ HHGQR P ++VA HGVA
Sbjct: 276 EHDDPAVREPRGGSRPDAVGVVRVIRHHGQR*VQPVEEVARHGVA 142
Score = 50.6 bits (104), Expect(3) = 6e-056
Identities = 19/34 (55%), Positives = 25/34 (73%)
Frame = -1 / +1
Query: 1505 DDGHAGIAVVYRTTDLVHFELLPGLLHRVDGTGM 1404
D HAG+A+VYRT D V ++ +P L+H V GTGM
Sbjct: 502 DRDHAGLALVYRTEDFVRYDPVPALMHVVPGTGM 603
Score = 40.9 bits (83), Expect(3) = 2e-033
Identities = 18/34 (52%), Positives = 20/34 (58%)
Frame = +1 / -2
Query: 1405 MPVPSTRCSRPGRSSKCTRSVVR*TTAMPAWPSS 1506
MPVP T C G S T+S VR T+A PAW S
Sbjct: 602 MPVPGTTCISAGTGSYRTKSSVRYTSARPAWSRS 501
Score = 27.6 bits (54), Expect(3) = 6e-056
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = -1 / +1
Query: 1544 SDGAWRVVIGSKDDD 1500
S AWRV IGSKD D
Sbjct: 466 SKQAWRVAIGSKDRD 510
Score = 24.4 bits (47), Expect(3) = 2e-033
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +1 / -2
Query: 1501 SSSLEPMTTRHA 1536
S SL+PM TRHA
Sbjct: 509 SRSLDPMATRHA 474
>gb|CW453451.1|CW453451 fsbb001f197h09f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f197h09, DNA
sequence
Length = 538
Score = 181 bits (389), Expect = 4e-044
Identities = 73/105 (69%), Positives = 79/105 (75%)
Frame = -1 / +1
Query: 1853 GHAVSRDLIRWRRLPLAMVPDQWYDTNGVWTGSATTLPDGRLAMLYRGSTNASVQVQCLA 1674
GHAVSRDL+ W LPLAMVPD YD NGVW+GSAT LPDGR+ MLY GST SVQVQ LA
Sbjct: 202 GHAVSRDLLHWLHLPLAMVPDHPYDANGVWSGSATRLPDGRIVMLYTGSTAESVQVQNLA 381
Query: 1673 VPADDADPLLTNWTKYEGNPVLYPPPGIGPKDFRDPTTVWIDPSD 1539
PAD +DPLL W K + NPVL PPPGIG DFRDPTT W +D
Sbjct: 382 EPADASDPLLREWVKSDANPVLVPPPGIGATDFRDPTTAWRAAND 516
Score = 118 bits (252), Expect = 3e-025
Identities = 55/100 (55%), Positives = 62/100 (62%)
Frame = +1 / -3
Query: 1561 VVGSRKSLGPMPGGGYSTGLPSYLVQLVXXXXXXXXXTARHCTWTEALVEPL*SIARRPS 1740
VVGSRKS+ PMPGGG STGL S L +AR CT T++ VEP+*S+ RPS
Sbjct: 494 VVGSRKSVAPMPGGGTSTGLASDLTHSRSSGSDASAGSARFCTCTDSAVEPV*SMTIRPS 315
Query: 1741 GSVVADPVHTPLVSYHWSGTMASGXXXXXXXXXDTAWPLI 1860
GS VADP TPL SY SGTMASG DTAWP +
Sbjct: 314 GSRVADPDQTPLASYG*SGTMASGRCSQWRRSRDTAWPQV 195
Score = 113 bits (241), Expect = 1e-023
Identities = 57/105 (54%), Positives = 66/105 (62%)
Frame = +3 / -2
Query: 1539 VRGVDPDRGGVAEVLGPDARGRVQHRVALVLGPVGEQRVGVVGGHGQALHLDGGVGGAPV 1718
V G P R VAEV PDAR R QHRV + L P+ +QRV VGG + LHL GA V
Sbjct: 516 VVGRPPRRRRVAEVRRPDARRRHQHRVGVRLDPLPQQRVRRVGGLREVLHLHRLRRGARV 337
Query: 1719 EHCEAAVGERGGGPRPHAVGVVPLVGHHGQREAAPADQVAGHGVA 1853
EH + AV E GG RP AVGVV ++ HHGQR P ++VA HGVA
Sbjct: 336 EHDDPAVREPRGGSRPDAVGVVRVIRHHGQR*VQPVEEVARHGVA 202
>gb|CN135740.1|CN135740 OX1_38_E07.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_38_E07_A002 5', mRNA sequence
Length = 759
Score = 95.9 bits (203), Expect(7) = 2e-042
Identities = 37/55 (67%), Positives = 42/55 (76%)
Frame = -1 / +2
Query: 1175 LRYDWGKFYASKTFYDPAKRRRVLWGWVGETDSERADVSKGWASLQGIPRTVLLD 1011
LRYD+G FYASKTFYDPAKRRRVL GW E+DS D +KGWA + IPR + LD
Sbjct: 482 LRYDYGNFYASKTFYDPAKRRRVLLGWANESDSVPDDQAKGWAGIHAIPRKIWLD 646
Score = 38.6 bits (78), Expect(7) = 2e-042
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -1 / +2
Query: 1004 TGSNLLQWPVEEVETLRTNSTDLSGITIDYGSVF 903
+G LLQWP+EEVE LR + + G + G F
Sbjct: 650 SGKQLLQWPIEEVEKLRGKAVTVGGKVVKPGEHF 751
Score = 35.4 bits (71), Expect(7) = 2e-042
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -1 / +2
Query: 1772 GVWTGSATTLPDGRLAMLYRGSTNASVQVQ 1683
G W+GSAT L DG A+LY G + Q
Sbjct: 5 GCWSGSATMLQDGTPAILYTGINRPDINYQ 94
Score = 33.6 bits (67), Expect(7) = 2e-042
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -1 / +2
Query: 1292 HVMKASMDDDRHDYYALGRYDAAANAWTPIDAGRD 1188
+V++ S+D R+DYY +G YD + + P + D
Sbjct: 368 YVLRNSLDLTRYDYYTIGSYDKRKDRYYPDNPNGD 472
Score = 32.7 bits (65), Expect(7) = 2e-042
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = -1 / +2
Query: 1412 TGMWECIDFYPVA 1374
TGMWEC DF+PV+
Sbjct: 281 TGMWECPDFFPVS 319
Score = 23.5 bits (45), Expect(7) = 2e-042
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -1 / +2
Query: 1577 FRDPTTVW 1554
FRDPTT W
Sbjct: 131 FRDPTTAW 154
Score = 23.1 bits (44), Expect(7) = 2e-042
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = -1 / +2
Query: 1544 SDGAWRVVIGSKDD 1503
+DG WR+++GS D
Sbjct: 158 ADGHWRMLVGSVRD 199
>gb|CW298322.1|CW298322 104_780_11462518_148_35651_081 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11462518, DNA
sequence
Length = 583
Score = 95.0 bits (201), Expect(5) = 1e-041
Identities = 38/77 (49%), Positives = 47/77 (61%)
Frame = -1 / +1
Query: 1775 NGVWTGSATTLPDGRLAMLYRGSTNASVQVQCLAVPADDADPLLTNWTKYEGNPVLYPPP 1596
NG W+GSAT LPDG ++Y G + QVQ +A P D +DP L W K + NPV+ P P
Sbjct: 4 NGCWSGSATVLPDGTPVIMYTGIDGENRQVQNVAYPKDLSDPYLREWVKPDYNPVIAPGP 183
Query: 1595 GIGPKDFRDPTTVWIDP 1545
G+ FRDPTT W P
Sbjct: 184 GMNATAFRDPTTAWQGP 234
Score = 62.0 bits (129), Expect(5) = 1e-041
Identities = 26/55 (47%), Positives = 33/55 (60%)
Frame = -1 / +1
Query: 1307 AGDVLHVMKASMDDDRHDYYALGRYDAAANAWTPIDAGRDVGIGLRYDWGKFYAS 1143
+G HV+K S+D R +YY G YD A + + P A D GLRYD+G FYAS
Sbjct: 418 SGGRKHVLKVSLDLTRFEYYTFGEYDDATDTYVPDAAIADGNDGLRYDYGNFYAS 582
Score = 35.9 bits (72), Expect(5) = 1e-041
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -1 / +1
Query: 1412 TGMWECIDFYPVATRG 1365
TGMWEC DFYPV + G
Sbjct: 355 TGMWECPDFYPVNSAG 402
Score = 28.1 bits (55), Expect(5) = 1e-041
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -1 / +1
Query: 1541 DGAWRVVIGSKDD 1503
DG WR+VIG+KD+
Sbjct: 235 DGLWRLVIGTKDN 273
Score = 24.9 bits (48), Expect(5) = 1e-041
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -1 / +1
Query: 1502 DGHAGIAVVYRTTDLVHFELLPGLLHRVD 1416
D H G+A++YR+ D + LH D
Sbjct: 268 DNHRGLAMLYRSRDFKRWAPARRALHSGD 354
>gb|CW294613.1|CW294613 104_775_11415280_116_35605_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11415280, DNA
sequence
Length = 701
Score = 169 bits (364), Expect = 1e-040
Identities = 68/71 (95%), Positives = 68/71 (95%)
Frame = -1 / +2
Query: 1853 GHAVSRDLIRWRRLPLAMVPDQWYDTNGVWTGSATTLPDGRLAMLYRGSTNASVQVQCLA 1674
GHAVSRDLI WR LPLAMVPDQWYDTNGVWTGSATTLPDGRLAMLY GSTNASVQVQCLA
Sbjct: 455 GHAVSRDLIHWRHLPLAMVPDQWYDTNGVWTGSATTLPDGRLAMLYTGSTNASVQVQCLA 634
Query: 1673 VPADDADPLLT 1641
VPADDADPLLT
Sbjct: 635 VPADDADPLLT 667
Score = 133 bits (286), Expect = 6e-030
Identities = 58/71 (81%), Positives = 59/71 (83%)
Frame = +3 / -2
Query: 1641 GEQRVGVVGGHGQALHLDGGVGGAPVEHCEAAVGERGGGPRPHAVGVVPLVGHHGQREAA 1820
GEQRVGVVGG G+ALHL GGVGGA VEH EAAVGERGGG P AVGVVPLV HHG RE A
Sbjct: 667 GEQRVGVVGGDGEALHLHGGVGGAGVEHGEAAVGERGGGACPDAVGVVPLVRHHG*REVA 488
Query: 1821 PADQVAGHGVA 1853
P DQVAG GVA
Sbjct: 487 PVDQVAGDGVA 455
Score = 117 bits (250), Expect = 6e-025
Identities = 47/58 (81%), Positives = 48/58 (82%)
Frame = -2 / +3
Query: 1852 ATPCPAT*SAGAASRWPWCPTSGTTPTACGRGPPPRSPTAASQCSTGAPPTPPSRCSA 1679
ATP PAT*S GA SR PWC TSGTTPTA G+ PPPRSPTAAS CST APPTPP RCSA
Sbjct: 456 ATPSPAT*STGATSR*PWCRTSGTTPTASGQAPPPRSPTAASPCSTPAPPTPPCRCSA 629
Score = 113 bits (241), Expect = 1e-023
Identities = 47/72 (65%), Positives = 52/72 (72%)
Frame = +1 / -3
Query: 1639 LVXXXXXXXXXTARHCTWTEALVEPL*SIARRPSGSVVADPVHTPLVSYHWSGTMASGXX 1818
+V TARHCT TEALVEP+*S+ARRPSGSVVA+PV TPLVSYHWSGTMASG
Sbjct: 669 VVSSGSASSAGTARHCTCTEALVEPV*SMARRPSGSVVAEPVQTPLVSYHWSGTMASGRW 490
Query: 1819 XXXXXXXDTAWP 1854
+TAWP
Sbjct: 489 RQWIRSRETAWP 454
>gb|CL159656.1|CL159656 104_349_10804417_116_31382_241 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10804417, DNA
sequence
Length = 659
Score = 109 bits (232), Expect(4) = 1e-040
Identities = 40/55 (72%), Positives = 46/55 (83%)
Frame = -1 / -3
Query: 1175 LRYDWGKFYASKTFYDPAKRRRVLWGWVGETDSERADVSKGWASLQGIPRTVLLD 1011
LRYD+G FYASKTFYDPAKRRR+LWGW E+D+ DV+KGWA +Q IPRTV LD
Sbjct: 375 LRYDYGNFYASKTFYDPAKRRRILWGWANESDTAADDVAKGWAGIQAIPRTVWLD 211
Score = 42.3 bits (86), Expect(4) = 1e-040
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = -1 / -3
Query: 1298 VLHVMKASMDDDRHDYYALGRYDAAANAWTPIDAGRD 1188
V HV+K S+D R+DYY +G YD A + P D D
Sbjct: 504 VKHVLKNSLDLRRYDYYTVGTYDRDAERYVPDDPAGD 394
Score = 37.3 bits (75), Expect(4) = 1e-040
Identities = 16/31 (51%), Positives = 18/31 (58%)
Frame = -1 / -3
Query: 1004 TGSNLLQWPVEEVETLRTNSTDLSGITIDYG 912
+G LLQWPVEEVE LR + L I G
Sbjct: 207 SGKQLLQWPVEEVEALRGKAVTLKNRVIKPG 115
Score = 36.8 bits (74), Expect(4) = 1e-040
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1 / -3
Query: 1412 TGMWECIDFYPVATRGRASANGVDMSDAIASNGAV 1308
TGMWEC DFYPV++ V + ++ S V
Sbjct: 606 TGMWECPDFYPVSSDEDGRRRRVGLETSVPSGARV 502
>gb|CW394782.1|CW394782 fsbb001f082i17f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f082i17, DNA
sequence
Length = 763
Score = 128 bits (274), Expect(4) = 4e-040
Identities = 51/98 (52%), Positives = 64/98 (65%)
Frame = -1 / +1
Query: 1307 AGDVLHVMKASMDDDRHDYYALGRYDAAANAWTPIDAGRDVGIGLRYDWGKFYASKTFYD 1128
+G HV+K S+D R +YY G YD A + + P A D GLRYD+G FYASKTF D
Sbjct: 118 SGGRKHVLKVSLDLTRFEYYTFGEYDDATDTYVPDAAIADGNDGLRYDYGNFYASKTFLD 297
Query: 1127 PAKRRRVLWGWVGETDSERADVSKGWASLQGIPRTVLL 1014
AK+RR+LWGW E+DS D+ KGWA +Q +PR V L
Sbjct: 298 TAKQRRILWGWANESDSTADDLRKGWAGVQAVPRKVWL 411
Score = 36.3 bits (73), Expect(4) = 4e-040
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -1 / +1
Query: 1001 GSNLLQWPVEEVETLRTNSTDLSGITIDYGSVFPLN 894
G L+QWPV E+E+LR N +++ + G F ++
Sbjct: 421 GKQLVQWPVAEIESLRGNHVNVTDTLVKAGQHFEVS 528
Score = 35.9 bits (72), Expect(4) = 4e-040
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -1 / +1
Query: 1412 TGMWECIDFYPVATRG 1365
TGMWEC DFYPV + G
Sbjct: 55 TGMWECPDFYPVNSAG 102
Score = 30.9 bits (61), Expect(4) = 4e-040
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -1 / +1
Query: 785 GAAGRGALGPFGLFVLADRRLR 720
GA +G +GPFGL+VLA L+
Sbjct: 652 GAEAKGGVGPFGLWVLASDDLQ 717
>gb|CW265997.1|CW265997 104_735_11232189_116_35271_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11232189, DNA
sequence
Length = 674
Score = 158 bits (340), Expect(2) = 1e-038
Identities = 63/125 (50%), Positives = 84/125 (67%)
Frame = -1 / -3
Query: 1412 TGMWECIDFYPVATRGRASANGVDMSDAIASNGAVAGDVLHVMKASMDDDRHDYYALGRY 1233
TGMWEC DF+PVA G + + + A + A+A +V +V+K S+D R++YY +G Y
Sbjct: 525 TGMWECPDFFPVAVHGGSRHHRRGVDTAELHDRALAEEVKYVLKVSLDMTRYEYYTVGSY 346
Query: 1232 DAAANAWTPIDAGRDVGIGLRYDWGKFYASKTFYDPAKRRRVLWGWVGETDSERADVSKG 1053
D A + +TP RD GLRYD+G FYASK+FYDPAKRRR+LWGW E+D+ D KG
Sbjct: 345 DHATDRYTPDAGFRDNDYGLRYDYGDFYASKSFYDPAKRRRILWGWANESDTVPDDRRKG 166
Query: 1052 WASLQ 1038
WA +Q
Sbjct: 165 WAGIQ 151
Score = 24.4 bits (47), Expect(2) = 1e-038
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -1 / -3
Query: 1571 DPTTVWIDPSDGAWRVVIGSKDDDGHA 1491
DPTT W+ P +V DD G A
Sbjct: 672 DPTTAWLGPDKHWRLLVGSRVDDKGLA 592
>gb|CW298321.1|CW298321 104_780_11462518_116_35647_081 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11462518, DNA
sequence
Length = 646
Score = 128 bits (274), Expect(3) = 2e-038
Identities = 51/98 (52%), Positives = 64/98 (65%)
Frame = -1 / -3
Query: 1307 AGDVLHVMKASMDDDRHDYYALGRYDAAANAWTPIDAGRDVGIGLRYDWGKFYASKTFYD 1128
+G HV+K S+D R +YY G YD A + + P A D GLRYD+G FYASKTF D
Sbjct: 548 SGGRKHVLKVSLDLTRFEYYTFGEYDDATDTYVPDAAIADGNDGLRYDYGNFYASKTFLD 369
Query: 1127 PAKRRRVLWGWVGETDSERADVSKGWASLQGIPRTVLL 1014
AK+RR+LWGW E+DS D+ KGWA +Q +PR V L
Sbjct: 368 TAKQRRILWGWANESDSTADDLRKGWAGVQAVPRKVWL 255
Score = 36.3 bits (73), Expect(3) = 2e-038
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -1 / -3
Query: 1001 GSNLLQWPVEEVETLRTNSTDLSGITIDYGSVFPLN 894
G L+QWPV E+E+LR N +++ + G F ++
Sbjct: 245 GKQLVQWPVAEIESLRGNHVNVTDTLVKAGQHFEVS 138
Score = 35.9 bits (72), Expect(3) = 2e-038
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -1 / -3
Query: 1412 TGMWECIDFYPVATRG 1365
TGMWEC DFYPV + G
Sbjct: 611 TGMWECPDFYPVNSAG 564
>gb|CB925835.1|CB925835 ABA1_23_E07.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor
cDNA clone ABA1_23_E07_A012 5', mRNA sequence
Length = 664
Score = 115 bits (245), Expect(3) = 2e-037
Identities = 48/101 (47%), Positives = 61/101 (60%)
Frame = -1 / +2
Query: 1853 GHAVSRDLIRWRRLPLAMVPDQWYDTNGVWTGSATTLPDGRLAMLYRGSTNASVQVQCLA 1674
GH+VS DL+ W L A+ P +D G W+GS TTL DGR A+LY G VQVQ +A
Sbjct: 47 GHSVSGDLVNWAFLGTALDPTSPFDAEGCWSGSTTTLADGRPAILYTGRDANDVQVQNVA 226
Query: 1673 VPADDADPLLTNWTKYEGNPVLYPPPGIGPKDFRDPTTVWI 1551
P + +DPLL W K NPV+ P + +FRDPTT W+
Sbjct: 227 FPKNPSDPLLREWHKPSCNPVVPQPADVTRNNFRDPTTAWL 349
Score = 51.5 bits (106), Expect(3) = 2e-037
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = -1 / +2
Query: 1499 GHAGIAVVYRTTDLVHFELLPGLLHRVDGTGMWECIDFYPVATRG 1365
G G VVYR+ D VH+E LH +WEC D +PVA RG
Sbjct: 392 GGVGSTVVYRSADFVHWERNAAPLHASPDVPVWECPDLFPVAERG 526
Score = 30.4 bits (60), Expect(3) = 2e-037
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1 / +2
Query: 1256 DYYALGRYDAAANAWTPID 1200
DYY +GRYD + + P+D
Sbjct: 605 DYYVVGRYDDETDTFAPVD 661
>gb|CW283797.1|CW283797 104_760_11409436_148_35488_010 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11409436, DNA
sequence
Length = 666
Score = 123 bits (264), Expect(4) = 6e-037
Identities = 50/107 (46%), Positives = 65/107 (60%)
Frame = -1 / -2
Query: 1865 HVIKGHAVSRDLIRWRRLPLAMVPDQWYDTNGVWTGSATTLPDGRLAMLYRGSTNASVQV 1686
+++ HAVS DL+ W LP A+ P +D NG W+GSAT LPDG ++Y G + QV
Sbjct: 557 NIVWAHAVSTDLVDWVMLPPAIYPTAPFDVNGCWSGSATVLPDGTPVIMYTGIDGENRQV 378
Query: 1685 QCLAVPADDADPLLTNWTKYEGNPVLYPPPGIGPKDFRDPTTVWIDP 1545
Q +A P D +DP L W K + NPV+ P PG+ FRDPTT W P
Sbjct: 377 QNVAYPKDLSDPYLREWVKPDYNPVIAPGPGMNATAFRDPTTAWQGP 237
Score = 35.9 bits (72), Expect(4) = 6e-037
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -1 / -2
Query: 1412 TGMWECIDFYPVATRG 1365
TGMWEC DFYPV + G
Sbjct: 116 TGMWECPDFYPVNSAG 69
Score = 28.1 bits (55), Expect(4) = 6e-037
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -1 / -2
Query: 1541 DGAWRVVIGSKDD 1503
DG WR+VIG+KD+
Sbjct: 236 DGLWRLVIGTKDN 198
Score = 24.9 bits (48), Expect(4) = 6e-037
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -1 / -2
Query: 1502 DGHAGIAVVYRTTDLVHFELLPGLLHRVD 1416
D H G+A++YR+ D + LH D
Sbjct: 203 DNHRGLAMLYRSRDFKRWAPARRALHSGD 117
>gb|CW042088.1|CW042088 104_275_10506931_114_30284 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10506931, DNA
sequence
Length = 615
Score = 75.3 bits (158), Expect(4) = 1e-036
Identities = 30/54 (55%), Positives = 37/54 (68%)
Frame = -1 / +2
Query: 1172 RYDWGKFYASKTFYDPAKRRRVLWGWVGETDSERADVSKGWASLQGIPRTVLLD 1011
R D G YASKTF+D + RRVLW V E+DSE DV++GW+ LQ PR + LD
Sbjct: 452 RIDRGHLYASKTFFDARRSRRVLWA*VNESDSEDDDVARGWSGLQSFPRALWLD 613
Score = 49.2 bits (101), Expect(4) = 1e-036
Identities = 18/35 (51%), Positives = 21/35 (60%)
Frame = -1 / +2
Query: 1655 DPLLTNWTKYEGNPVLYPPPGIGPKDFRDPTTVWI 1551
DPLL W K NPV+ P + DFRDPTT W+
Sbjct: 5 DPLLREWAKPAYNPVVPLPADVSSNDFRDPTTAWL 109
Score = 46.0 bits (94), Expect(4) = 1e-036
Identities = 18/35 (51%), Positives = 23/35 (65%)
Frame = -1 / +2
Query: 1298 VLHVMKASMDDDRHDYYALGRYDAAANAWTPIDAG 1194
V HV+K SM D DYYA+G YD A+ +TP + G
Sbjct: 329 VRHVLKVSMPDTLEDYYAVGTYDDGADTFTPDEDG 433
Score = 41.4 bits (84), Expect(4) = 1e-036
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = -1 / +2
Query: 1490 GIAVVYRTTDLVHFELLPGLLHRVDGTGMWECIDFYPVATRGRA 1359
G +VYR+ D + +E LH M EC D +PVATRG A
Sbjct: 161 GATLVYRSADFLRWERRATPLHASRDAVMAECPDLFPVATRGGA 292
>gb|CW276976.1|CW276976 104_750_11405776_148_35399_050 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11405776, DNA
sequence
Length = 530
Score = 109 bits (232), Expect(3) = 5e-035
Identities = 40/55 (72%), Positives = 46/55 (83%)
Frame = -1 / -1
Query: 1175 LRYDWGKFYASKTFYDPAKRRRVLWGWVGETDSERADVSKGWASLQGIPRTVLLD 1011
LRYD+G FYASKTFYDPAKRRR+LWGW E+D+ DV+KGWA +Q IPRTV LD
Sbjct: 311 LRYDYGNFYASKTFYDPAKRRRILWGWANESDTAADDVAKGWAGIQAIPRTVWLD 147
Score = 42.3 bits (86), Expect(3) = 5e-035
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = -1 / -1
Query: 1298 VLHVMKASMDDDRHDYYALGRYDAAANAWTPIDAGRD 1188
V HV+K S+D R+DYY +G YD A + P D D
Sbjct: 440 VKHVLKNSLDLRRYDYYTVGTYDRDAERYVPDDPAGD 330
Score = 37.3 bits (75), Expect(3) = 5e-035
Identities = 16/31 (51%), Positives = 18/31 (58%)
Frame = -1 / -1
Query: 1004 TGSNLLQWPVEEVETLRTNSTDLSGITIDYG 912
+G LLQWPVEEVE LR + L I G
Sbjct: 143 SGKQLLQWPVEEVEALRGKAVTLKNRVIKPG 51
>gb|CW033209.1|CW033209 104_262_10501822_115_30362 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10501822, DNA
sequence
Length = 424
Score = 105 bits (224), Expect(3) = 8e-034
Identities = 39/54 (72%), Positives = 45/54 (83%)
Frame = -1 / +3
Query: 1175 LRYDWGKFYASKTFYDPAKRRRVLWGWVGETDSERADVSKGWASLQGIPRTVLL 1014
LRYD+G FYASKTFYDPAKRRR+LWGW E+D+ DV+KGWA +Q IPRTV L
Sbjct: 261 LRYDYGNFYASKTFYDPAKRRRILWGWANESDTAADDVAKGWAVIQAIPRTVWL 422
Score = 42.3 bits (86), Expect(3) = 8e-034
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = -1 / +3
Query: 1298 VLHVMKASMDDDRHDYYALGRYDAAANAWTPIDAGRD 1188
V HV+K S+D R+DYY +G YD A + P D D
Sbjct: 132 VKHVLKNSLDLRRYDYYTVGTYDRDAERYVPDDPAGD 242
Score = 36.8 bits (74), Expect(3) = 8e-034
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1 / +3
Query: 1412 TGMWECIDFYPVATRGRASANGVDMSDAIASNGAV 1308
TGMWEC DFYPV++ V + ++ S V
Sbjct: 30 TGMWECPDFYPVSSDEDGRRRRVGLETSVPSGARV 134
>gb|CW221655.1|CW221655 104_656_11198025_148_37167_033 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11198025, DNA
sequence
Length = 577
Score = 57.9 bits (120), Expect(4) = 6e-030
Identities = 23/48 (47%), Positives = 30/48 (62%)
Frame = -1 / -3
Query: 1694 VQVQCLAVPADDADPLLTNWTKYEGNPVLYPPPGIGPKDFRDPTTVWI 1551
VQVQ +A P + +DPLL W K NPV+ P + +FRDPTT W+
Sbjct: 572 VQVQNVAFPKNPSDPLLREWHKPSCNPVVPQPADVTRNNFRDPTTAWL 429
Score = 51.5 bits (106), Expect(4) = 6e-030
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = -1 / -3
Query: 1499 GHAGIAVVYRTTDLVHFELLPGLLHRVDGTGMWECIDFYPVATRG 1365
G G VVYR+ D VH+E LH +WEC D +PVA RG
Sbjct: 386 GGVGSTVVYRSADFVHWERNAAPLHASPDVPVWECPDLFPVAERG 252
Score = 47.3 bits (97), Expect(4) = 6e-030
Identities = 18/37 (48%), Positives = 22/37 (59%)
Frame = -1 / -3
Query: 1202 DAGRDVGIGLRYDWGKFYASKTFYDPAKRRRVLWGWV 1092
D DV R D G + +KTF+D K+RRVLW WV
Sbjct: 116 DGDHDVRNWRRIDHGHLFGAKTFFDARKKRRVLWAWV 6
Score = 32.2 bits (64), Expect(4) = 6e-030
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1 / -3
Query: 1256 DYYALGRYDAAANAWTPIDAG 1194
DYY +GRYD + + P+D G
Sbjct: 173 DYYVVGRYDDETDTFAPVDDG 111
>gb|CL151746.1|CL151746 104_334_10779469_114_31361_253 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10779469, DNA
sequence
Length = 749
Score = 82.6 bits (174), Expect(4) = 9e-030
Identities = 31/54 (57%), Positives = 38/54 (70%)
Frame = -1 / +2
Query: 1172 RYDWGKFYASKTFYDPAKRRRVLWGWVGETDSERADVSKGWASLQGIPRTVLLD 1011
R D G YASKTF+D + RRVLW WV E+DSE DV++GW+ LQ PR + LD
Sbjct: 164 RIDRGHLYASKTFFDARRSRRVLWAWVNESDSEADDVARGWSGLQSFPRALWLD 325
Score = 46.0 bits (94), Expect(4) = 9e-030
Identities = 18/35 (51%), Positives = 23/35 (65%)
Frame = -1 / +2
Query: 1298 VLHVMKASMDDDRHDYYALGRYDAAANAWTPIDAG 1194
V HV+K SM D DYYA+G YD A+ +TP + G
Sbjct: 41 VRHVLKVSMPDTLEDYYAVGTYDDGADTFTPDEDG 145
Score = 37.3 bits (75), Expect(4) = 9e-030
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = -1 / +2
Query: 1001 GSNLLQWPVEEVETLRT 951
G L+QWPVEE+ETLRT
Sbjct: 332 GKQLVQWPVEEIETLRT 382
Score = 30.4 bits (60), Expect(4) = 9e-030
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1 / +2
Query: 785 GAAGRGALGPFGLFVLADRRLRREQTAVY 699
GA+ RG +GPFGL V+A L +
Sbjct: 563 GASVRGGVGPFGLLVMASGDLHEHTAVFF 649
>gb|CF484409.1|CF484409 POL1_25_D08.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_25_D08_A002 3', mRNA sequence
Length = 610
Score = 133 bits (284), Expect = 1e-029
Identities = 52/98 (53%), Positives = 67/98 (68%)
Frame = -1 / +2
Query: 1301 DVLHVMKASMDDDRHDYYALGRYDAAANAWTPIDAGRDVGIGLRYDWGKFYASKTFYDPA 1122
+V +V+K S+D R++YY +G YD A + +TP RD GLRYD+G FYASK+FYDPA
Sbjct: 5 EVKYVLKVSLDMTRYEYYTVGSYDHATDRYTPDAGFRDNDYGLRYDYGDFYASKSFYDPA 184
Query: 1121 KRRRVLWGWVGETDSERADVSKGWASLQGIPRTVLLDT 1008
KRRR+LWGW E+D+ D KGWA +Q RT L T
Sbjct: 185 KRRRILWGWANESDTVPDDRRKGWAGIQATTRTSLCST 298
>gb|BE595814.1|BE595814 PI1_54_D08.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA,
mRNA sequence
Length = 474
Score = 95.9 bits (203), Expect(3) = 2e-029
Identities = 37/55 (67%), Positives = 42/55 (76%)
Frame = -1 / +1
Query: 1175 LRYDWGKFYASKTFYDPAKRRRVLWGWVGETDSERADVSKGWASLQGIPRTVLLD 1011
LRYD+G FYASKTFYDPAKRRRVL GW E+DS D +KGWA + IPR + LD
Sbjct: 94 LRYDYGNFYASKTFYDPAKRRRVLLGWANESDSVPDDKAKGWAGIHAIPRKIWLD 258
Score = 46.9 bits (96), Expect(3) = 2e-029
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = -1 / +1
Query: 1004 TGSNLLQWPVEEVETLRTNSTDLSGITIDYGSVFPLNLRRATQLDIEAEFQL 849
+G LLQWP+EEVE LR + + G + G F + Q D+E F++
Sbjct: 262 SGKQLLQWPIEEVEKLRGKAVTVGGKVVKPGEHFEVTGIATYQADVEVSFEI 417
Score = 26.7 bits (52), Expect(3) = 2e-029
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -1 / +1
Query: 1262 RHDYYALGRYDAAANAWTPIDAGRD 1188
R+DYY +G YD + + P + D
Sbjct: 10 RYDYYTIGSYDKRKDRYYPDNPNGD 84
>gb|CF485817.1|CF485817 POL1_33_G12.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_33_G12_A002 5', mRNA sequence
Length = 714
Score = 111 bits (238), Expect(2) = 1e-027
Identities = 50/120 (41%), Positives = 64/120 (53%)
Frame = -1 / +3
Query: 1850 HAVSRDLIRWRRLPLAMVPDQWYDTNGVWTGSATTLPDGRLAMLYRGSTNASVQVQCLAV 1671
H+VS DLI W L + P + +D G W+GSAT LP G ++Y G QVQ LA
Sbjct: 246 HSVSTDLIDWTALDPGIYPSKNFDIKGCWSGSATVLPSGMPIVMYTGIDPNDHQVQNLAY 425
Query: 1670 PADDADPLLTNWTKYEGNPVLYPPPGIGPKDFRDPTTVWIDPSDGAWRVVIGSKDDDGHA 1491
P + +DP L W K + NP++ P GI FRDPTT W+ P +V DD G A
Sbjct: 426 PKNLSDPFLREWVKPDYNPIISPDSGINASAFRDPTTAWLGPDKHWRLLVGSRVDDKGLA 605
Score = 34.1 bits (68), Expect(2) = 1e-027
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = -1 / +3
Query: 1412 TGMWECIDFYPVA 1374
TGMWEC DF+PVA
Sbjct: 672 TGMWECPDFFPVA 710
>gb|CW439175.1|CW439175 fsbb001f157d01k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f157d01, DNA
sequence
Length = 456
Score = 101 bits (215), Expect(3) = 3e-026
Identities = 38/55 (69%), Positives = 44/55 (80%)
Frame = -1 / -1
Query: 1175 LRYDWGKFYASKTFYDPAKRRRVLWGWVGETDSERADVSKGWASLQGIPRTVLLD 1011
LRYD+G FYASKTFYDPAKRRR+LWGW E+D+ DV+KGWA +Q RTV LD
Sbjct: 375 LRYDYGNFYASKTFYDPAKRRRILWGWANESDTAADDVAKGWAGIQENTRTVWLD 211
Score = 37.3 bits (75), Expect(3) = 3e-026
Identities = 16/31 (51%), Positives = 18/31 (58%)
Frame = -1 / -1
Query: 1004 TGSNLLQWPVEEVETLRTNSTDLSGITIDYG 912
+G LLQWPVEEVE LR + L I G
Sbjct: 207 SGKQLLQWPVEEVEALRGKAVTLKNRVIKPG 115
Score = 24.9 bits (48), Expect(3) = 3e-026
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2 / -2
Query: 1780 TPTACGRGPPPRSPTAASQCST 1715
TP+ R PP + TA++ C T
Sbjct: 431 TPSGTCRTTPPATTTASAACGT 366
>gb|CF483263.1|CF483263 POL1_21_B02.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_21_B02_A002 3', mRNA sequence
Length = 533
Score = 121 bits (259), Expect = 3e-026
Identities = 47/89 (52%), Positives = 63/89 (70%)
Frame = -1 / +1
Query: 1313 AVAGDVLHVMKASMDDDRHDYYALGRYDAAANAWTPIDAGRDVGIGLRYDWGKFYASKTF 1134
A+A +V +V+K S+ R++YY +G YD A + +TP RD GLRY++G FYASK+F
Sbjct: 25 ALAEEVKYVLKVSLGMTRYEYYTVGSYDHATDRYTPDAGFRDNDYGLRYEYGDFYASKSF 204
Query: 1133 YDPAKRRRVLWGWVGETDSERADVSKGWA 1047
YDPAKRRR+LWGW E+D+ D KGWA
Sbjct: 205 YDPAKRRRILWGWANESDTVPDDRRKGWA 291
>gb|CX611907.1|CX611907 ANR1_27_H10.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone
ANR1_27_H10_A002 3', mRNA sequence
Length = 834
Score = 66.1 bits (138), Expect(4) = 6e-026
Identities = 30/77 (38%), Positives = 44/77 (57%)
Frame = -1 / +2
Query: 653 CQDESRSSSATDIVKRVVGSAVPVLEDEATLSLRVLVDHSIVESFAQGGRSTATSRVYPT 474
C D ++SS ++ + V +SLR L+D S+VESF GG++ SRVYP+
Sbjct: 431 CTDPTKSSLNPNLYRPTFAGFVDTDISNGKISLRSLIDRSVVESFGAGGKTCILSRVYPS 610
Query: 473 EAIYANAGVFLFNNATA 423
AI NA +++FNN A
Sbjct: 611 LAIGNNARLYVFNNGKA 661
Score = 46.4 bits (95), Expect(4) = 6e-026
Identities = 22/64 (34%), Positives = 29/64 (45%)
Frame = -1 / +2
Query: 1004 TGSNLLQWPVEEVETLRTNSTDLSGITIDYGSVFPLNLRRATQLDIEAEFQLDRRAVMSL 825
+G LLQWPVEEVE LR + L I G + + Q D+E F+ A+
Sbjct: 56 SGKQLLQWPVEEVEALRGKAVTLKNRVIKPGQHVEVTGIQTAQADVEVSFEASPSALAGA 235
Query: 824 NEAD 813
D
Sbjct: 236 ERLD 247
Score = 33.6 bits (67), Expect(4) = 6e-026
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = -1 / +2
Query: 1061 SKGWASLQGIPRTVLLD 1011
+KGWA +Q IPRTV LD
Sbjct: 2 AKGWAGIQAIPRTVWLD 52
Score = 29.0 bits (57), Expect(4) = 6e-026
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1 / +2
Query: 773 RGALGPFGLFVLADRRLRREQTAVY 699
+G +GPFGL+VLA L+ +
Sbjct: 302 KGGVGPFGLWVLASANLKERTAVFF 376
>gb|CW492385.1|CW492385 fsbb001f282k08k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f282k08, DNA
sequence
Length = 730
Score = 116 bits (249), Expect = 8e-025
Identities = 45/48 (93%), Positives = 45/48 (93%)
Frame = -1 / +2
Query: 1853 GHAVSRDLIRWRRLPLAMVPDQWYDTNGVWTGSATTLPDGRLAMLYRG 1710
GHAVSRDLI WR LPLAMVPDQWYDTNGVWTGSATTLPDGRLAMLY G
Sbjct: 587 GHAVSRDLIHWRHLPLAMVPDQWYDTNGVWTGSATTLPDGRLAMLYTG 730
>gb|CN132843.1|CN132843 OX1_8_C05.g1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_8_C05_A002 5', mRNA sequence
Length = 784
Score = 112 bits (239), Expect(2) = 9e-025
Identities = 47/101 (46%), Positives = 60/101 (59%)
Frame = -1 / +2
Query: 1853 GHAVSRDLIRWRRLPLAMVPDQWYDTNGVWTGSATTLPDGRLAMLYRGSTNASVQVQCLA 1674
GH+VS DL+ W L A+ P +D NG W+GSAT LP G A+LY G + QVQ +A
Sbjct: 308 GHSVSGDLVNWAALDTALDPTSPFDANGCWSGSATILPGGTPAILYTGIDASGEQVQNVA 487
Query: 1673 VPADDADPLLTNWTKYEGNPVLYPPPGIGPKDFRDPTTVWI 1551
P + ADPLL W K NPV+ P + FRDP+T W+
Sbjct: 488 FPRNPADPLLREWDKPSYNPVIPLPADVPGDKFRDPSTAWL 610
Score = 27.6 bits (54), Expect(2) = 9e-025
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = -3 / +1
Query: 1125 GQAPPRAVGMGRRDRLGARGRVQGMGVAAGYPPDGAPGHQ 1006
G A PR R R G R V G PP GA GH+
Sbjct: 601 GVAGPRRAVAHRGVRRGPRRGVHARVPEPGLPPLGARGHR 720
>gb|CW352129.1|CW352129 fsbb001f014e01f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f014e01, DNA
sequence
Length = 555
Score = 51.5 bits (106), Expect(4) = 2e-024
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = -1 / -3
Query: 1499 GHAGIAVVYRTTDLVHFELLPGLLHRVDGTGMWECIDFYPVATRG 1365
G G VVYR+ D VH+E LH +WEC D +PVA RG
Sbjct: 370 GGVGSTVVYRSADFVHWERNAAPLHASPDVPVWECPDLFPVAERG 236
Score = 50.6 bits (104), Expect(4) = 2e-024
Identities = 19/43 (44%), Positives = 25/43 (58%)
Frame = -1 / -3
Query: 1679 LAVPADDADPLLTNWTKYEGNPVLYPPPGIGPKDFRDPTTVWI 1551
+A P + +DPLL W K NPV+ P + FRDPTT W+
Sbjct: 541 VAFPKNPSDPLLREWHKPSCNPVVPQPADVTRNSFRDPTTAWL 413
Score = 35.4 bits (71), Expect(4) = 2e-024
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -1 / -3
Query: 1202 DAGRDVGIGLRYDWGKFYASKTFYDPAKRRRVL 1104
D DV R D G + +KTF+D K+RRVL
Sbjct: 100 DGDHDVRNWRRIDHGHLFGAKTFFDARKKRRVL 2
Score = 32.2 bits (64), Expect(4) = 2e-024
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1 / -3
Query: 1256 DYYALGRYDAAANAWTPIDAG 1194
DYY +GRYD + + P+D G
Sbjct: 157 DYYVVGRYDDETDTFAPVDDG 95
>gb|CW176524.1|CW176524 104_589_11158533_148_36583_087 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11158533, DNA
sequence
Length = 554
Score = 115 bits (245), Expect = 3e-024
Identities = 48/101 (47%), Positives = 61/101 (60%)
Frame = -1 / +3
Query: 1853 GHAVSRDLIRWRRLPLAMVPDQWYDTNGVWTGSATTLPDGRLAMLYRGSTNASVQVQCLA 1674
GH+VS DL+ W L A+ P +D G W+GS TTL DGR A+LY G VQVQ +A
Sbjct: 222 GHSVSGDLVNWAFLGTALDPTSPFDAEGCWSGSTTTLADGRPAILYTGRDANDVQVQNVA 401
Query: 1673 VPADDADPLLTNWTKYEGNPVLYPPPGIGPKDFRDPTTVWI 1551
P + +DPLL W K NPV+ P + +FRDPTT W+
Sbjct: 402 FPKNPSDPLLREWHKPSCNPVVPQPADVTRNNFRDPTTAWL 524
>gb|CD220374.1|CD220374 CCC1_66_C08.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_66_C08_A007 5', mRNA sequence
Length = 587
Score = 115 bits (245), Expect = 3e-024
Identities = 48/101 (47%), Positives = 61/101 (60%)
Frame = -1 / +2
Query: 1853 GHAVSRDLIRWRRLPLAMVPDQWYDTNGVWTGSATTLPDGRLAMLYRGSTNASVQVQCLA 1674
GH+VS DL+ W L A+ P +D G W+GS TTL DGR A+LY G VQVQ +A
Sbjct: 263 GHSVSGDLVNWAFLGTALDPTSPFDAKGCWSGSTTTLADGRPAILYTGRDANDVQVQNVA 442
Query: 1673 VPADDADPLLTNWTKYEGNPVLYPPPGIGPKDFRDPTTVWI 1551
P + +DPLL W K NPV+ P + +FRDPTT W+
Sbjct: 443 FPKNPSDPLLREWHKPSCNPVVPQPADVTRNNFRDPTTAWL 565
>gb|CD226421.1|CD226421 CCC1_45_B12.g1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_45_B12_A007 5', mRNA sequence
Length = 658
Score = 115 bits (245), Expect = 3e-024
Identities = 48/101 (47%), Positives = 61/101 (60%)
Frame = -1 / +3
Query: 1853 GHAVSRDLIRWRRLPLAMVPDQWYDTNGVWTGSATTLPDGRLAMLYRGSTNASVQVQCLA 1674
GH+VS DL+ W L A+ P +D G W+GS TTL DGR A+LY G VQVQ +A
Sbjct: 273 GHSVSGDLVNWAFLGTALDPTSPFDAEGCWSGSTTTLADGRPAILYTGRDAYDVQVQNVA 452
Query: 1673 VPADDADPLLTNWTKYEGNPVLYPPPGIGPKDFRDPTTVWI 1551
P + +DPLL W K NPV+ P + +FRDPTT W+
Sbjct: 453 FPKNPSDPLLREWHKPSCNPVVPQPADVTRNNFRDPTTAWL 575
>gb|CF485961.1|CF485961 POL1_34_G06.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_34_G06_A002 5', mRNA sequence
Length = 633
Score = 115 bits (245), Expect = 3e-024
Identities = 47/101 (46%), Positives = 62/101 (61%)
Frame = -1 / +2
Query: 1865 HVIKGHAVSRDLIRWRRLPLAMVPDQWYDTNGVWTGSATTLPDGRLAMLYRGSTNASVQV 1686
+++ HAVS DL+ W LP A+ P +D NG W+GSAT LPDG ++Y G + QV
Sbjct: 329 NIVWAHAVSTDLVDWVMLPPAIYPTAPFDVNGCWSGSATVLPDGTPVIMYTGIDGENRQV 508
Query: 1685 QCLAVPADDADPLLTNWTKYEGNPVLYPPPGIGPKDFRDPT 1563
Q +A P D +DP L W K + NPV+ P PG+ FRDPT
Sbjct: 509 QNVAYPKDLSDPYLREWVKPDYNPVIAPGPGMNATAFRDPT 631
>gb|CW050896.1|CW050896 104_291_10514924_114_30192 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10514924, DNA
sequence
Length = 308
Score = 72.1 bits (151), Expect(2) = 4e-024
Identities = 31/74 (41%), Positives = 40/74 (54%)
Frame = -1 / +2
Query: 1409 GMWECIDFYPVATRGRASANGVDMSDAIASNGAVAGDVLHVMKASMDDDRHDYYALGRYD 1230
GMWEC DFYP++T GR S A A+ +V+K S+D R+DYY +G YD
Sbjct: 2 GMWECPDFYPLSTAGRRMGVETSSSSAAAAGSRRRQANKYVLKNSLDLRRYDYYTIGTYD 181
Query: 1229 AAANAWTPIDAGRD 1188
AA + P D D
Sbjct: 182 PAAERYVPDDPAGD 223
Score = 62.0 bits (129), Expect(2) = 4e-024
Identities = 22/25 (88%), Positives = 24/25 (96%)
Frame = -1 / +2
Query: 1175 LRYDWGKFYASKTFYDPAKRRRVLW 1101
LRYD+G FYASKTFYDPAKRRR+LW
Sbjct: 233 LRYDYGNFYASKTFYDPAKRRRILW 307
>gb|CW199054.1|CW199054 104_624_11183306_116_36856_015 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11183306, DNA
sequence
Length = 642
Score = 84.0 bits (177), Expect(3) = 4e-024
Identities = 32/45 (71%), Positives = 36/45 (80%)
Frame = -1 / -2
Query: 1175 LRYDWGKFYASKTFYDPAKRRRVLWGWVGETDSERADVSKGWASL 1041
LRYD+G FYASKTFYDPAKRRRVL GW E+DS D +KGWA +
Sbjct: 347 LRYDYGNFYASKTFYDPAKRRRVLLGWANESDSVPDDKAKGWAGI 213
Score = 35.0 bits (70), Expect(3) = 4e-024
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1 / -2
Query: 1292 HVMKASMDDDRHDYYALGRYDAAANAWTPIDAGRD 1188
+V+K S+D R+DYY +G YD + + P + D
Sbjct: 461 YVLKNSLDLTRYDYYTIGSYDKRKDRYYPDNPNGD 357
Score = 32.7 bits (65), Expect(3) = 4e-024
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = -1 / -2
Query: 1412 TGMWECIDFYPVA 1374
TGMWEC DF+PV+
Sbjct: 548 TGMWECPDFFPVS 510
>gb|CW043830.1|CW043830 104_279_10508602_114_30276 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 10508602, DNA
sequence
Length = 581
Score = 87.7 bits (185), Expect(2) = 1e-023
Identities = 37/63 (58%), Positives = 44/63 (69%)
Frame = -1 / +3
Query: 878 QLDIEAEFQLDRRAVMSLNEADVGYNCSTSGGAAGRGALGPFGLFVLADRRLRREQTAVY 699
QLDIEA F++D AV + EADV +NCSTS GAAGRG LGPFGL VLAD L + +
Sbjct: 234 QLDIEAVFEVDAAAVEGVTEADVTFNCSTSAGAAGRGLLGPFGLLVLADEDLSEQTAVYF 413
Query: 698 FYV 690
+ V
Sbjct: 414 YLV 422
Score = 44.6 bits (91), Expect(2) = 1e-023
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = -1 / +2
Query: 989 LQWPVEEVETLRTNSTDLSGITIDYGSVFPLNLRRATQL 873
LQWPV EVE LR + + + GSV PL++ +ATQ+
Sbjct: 2 LQWPVVEVENLRMSGKRFDDVALHRGSVVPLDVGKATQV 118
>gb|CD425117.1|CD425117 SA1_10_D06.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor
cDNA clone SA1_10_D06_A002 5', mRNA sequence
Length = 658
Score = 112 bits (239), Expect = 2e-023
Identities = 47/101 (46%), Positives = 60/101 (59%)
Frame = -1 / +2
Query: 1853 GHAVSRDLIRWRRLPLAMVPDQWYDTNGVWTGSATTLPDGRLAMLYRGSTNASVQVQCLA 1674
GH+VS DL+ W L A+ P +D NG W+GSAT LP G A+LY G + QVQ +A
Sbjct: 320 GHSVSGDLVNWAALDTALDPTSPFDANGCWSGSATILPGGTPAILYTGIDASGEQVQNVA 499
Query: 1673 VPADDADPLLTNWTKYEGNPVLYPPPGIGPKDFRDPTTVWI 1551
P + ADPLL W K NPV+ P + FRDP+T W+
Sbjct: 500 FPRNPADPLLREWDKPSYNPVIPLPADVPGDKFRDPSTAWL 622
>gb|CX615540.1|CX615540 GABR1_20_F03.g1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_20_F03_A002 5', mRNA sequence
Length = 780
Score = 112 bits (239), Expect = 2e-023
Identities = 47/101 (46%), Positives = 60/101 (59%)
Frame = -1 / +1
Query: 1853 GHAVSRDLIRWRRLPLAMVPDQWYDTNGVWTGSATTLPDGRLAMLYRGSTNASVQVQCLA 1674
GH+VS DL+ W L A+ P +D G W+GS T L DGR A+LY G VQVQ +A
Sbjct: 448 GHSVSGDLVNWAFLGTALDPTSPFDAEGCWSGSTTMLADGRPAILYTGRDANDVQVQNVA 627
Query: 1673 VPADDADPLLTNWTKYEGNPVLYPPPGIGPKDFRDPTTVWI 1551
P + +DPLL W K NPV+ P + +FRDPTT W+
Sbjct: 628 FPKNPSDPLLREWHKPSCNPVVPQPADVTRNNFRDPTTAWL 750
>gb|CW164970.1|CW164970 104_573_11152260_148_36476_046 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11152260, DNA
sequence
Length = 543
Score = 111 bits (238), Expect = 3e-023
Identities = 50/120 (41%), Positives = 64/120 (53%)
Frame = -1 / -2
Query: 1850 HAVSRDLIRWRRLPLAMVPDQWYDTNGVWTGSATTLPDGRLAMLYRGSTNASVQVQCLAV 1671
H+VS DLI W L + P + +D G W+GSAT LP G ++Y G QVQ LA
Sbjct: 431 HSVSTDLIDWTALDPGIYPSKNFDIKGCWSGSATVLPSGMPIVMYTGIDPNDHQVQNLAY 252
Query: 1670 PADDADPLLTNWTKYEGNPVLYPPPGIGPKDFRDPTTVWIDPSDGAWRVVIGSKDDDGHA 1491
P + +DP L W K + NP++ P GI FRDPTT W+ P +V DD G A
Sbjct: 251 PKNLSDPFLREWVKPDYNPIISPDSGINASAFRDPTTAWLGPDKHWRLLVGSRVDDKGLA 72
>gb|CF480551.1|CF480551 POL1_66_A09.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_66_A09_A002 5', mRNA sequence
Length = 735
Score = 111 bits (238), Expect = 3e-023
Identities = 50/120 (41%), Positives = 64/120 (53%)
Frame = -1 / +2
Query: 1850 HAVSRDLIRWRRLPLAMVPDQWYDTNGVWTGSATTLPDGRLAMLYRGSTNASVQVQCLAV 1671
H+VS DLI W L + P + +D G W+GSAT LP G ++Y G QVQ LA
Sbjct: 317 HSVSTDLIDWTALDPGIYPSKNFDIKGCWSGSATVLPSGMPIVMYTGIDPNDHQVQNLAY 496
Query: 1670 PADDADPLLTNWTKYEGNPVLYPPPGIGPKDFRDPTTVWIDPSDGAWRVVIGSKDDDGHA 1491
P + +DP L W K + NP++ P GI FRDPTT W+ P +V DD G A
Sbjct: 497 PKNLSDPFLREWVKPDYNPIISPDSGINASAFRDPTTAWLGPDKHWRLLVGSRVDDKGLA 676
>gb|CF480611.1|CF480611 POL1_66_G02.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_66_G02_A002 5', mRNA sequence
Length = 731
Score = 111 bits (238), Expect = 3e-023
Identities = 50/120 (41%), Positives = 64/120 (53%)
Frame = -1 / +2
Query: 1850 HAVSRDLIRWRRLPLAMVPDQWYDTNGVWTGSATTLPDGRLAMLYRGSTNASVQVQCLAV 1671
H+VS DLI W L + P + +D G W+GSAT LP G ++Y G QVQ LA
Sbjct: 311 HSVSTDLIDWTALDPGIYPSKNFDIKGCWSGSATVLPSGMPIVMYTGIDPNDHQVQNLAY 490
Query: 1670 PADDADPLLTNWTKYEGNPVLYPPPGIGPKDFRDPTTVWIDPSDGAWRVVIGSKDDDGHA 1491
P + +DP L W K + NP++ P GI FRDPTT W+ P +V DD G A
Sbjct: 491 PKNLSDPFLREWVKPDYNPIISPDSGINASAFRDPTTAWLGPDKHWRLLVGSRVDDKGLA 670
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,753,795,028
Number of Sequences: 832831
Number of extensions: 28254247
Number of successful extensions: 522931
Number of sequences better than 1.0e-020: 77
length of database: 163,786,556
effective HSP length: 57
effective length of database: 116,315,189
effective search space used: 65601766596
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)