TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3203826.2.1
(594 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN136626.1|CN136626 OX1_44_G12.b1_A002 Oxidatively-stres... 182 2e-066
gb|CW155769.1|CW155769 104_558_11146316_116_36370_074 Sorgh... 182 2e-060
gb|CW354064.1|CW354064 fsbb001f017b11k0 Sorghum methylation... 125 2e-048
gb|CW217959.1|CW217959 104_651_11195928_148_37066_090 Sorgh... 107 1e-024
gb|CW435340.1|CW435340 fsbb001f151h04k0 Sorghum methylation... 107 2e-024
gb|CW253166.1|CW253166 104_716_11224935_116_35104_054 Sorgh... 104 1e-021
gb|CW376698.1|CW376698 fsbb001f054l06f0 Sorghum methylation... 104 1e-021
gb|CW480555.1|CW480555 fsbb001f239k22f0 Sorghum methylation... 104 1e-021
gb|CD210102.1|CD210102 HS1_57_F11.b1_A012 Heat-shocked seed... 104 1e-021
gb|CD221661.1|CD221661 CCC1_70_E11.b1_A007 Callus culture/c... 104 1e-021
>gb|CN136626.1|CN136626 OX1_44_G12.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_44_G12_A002 3', mRNA sequence
Length = 795
Score = 182 bits (392), Expect(5) = 2e-066
Identities = 71/95 (74%), Positives = 80/95 (84%)
Frame = -1 / +1
Query: 594 QGLRERSFSRRHHAELSRAMGADAAFVGCNLEARLWLCSSGPVPPPLDVQLRPGTHSQQC 415
+G +RSF RRHHAEL R MGA AAF+GC+LEARL LC S PVPPP D+QLR GTHSQQC
Sbjct: 241 RGQ*KRSFGRRHHAELGRTMGAYAAFMGCDLEARLGLCPSRPVPPPPDIQLRQGTHSQQC 420
Query: 414 HTCRMECGCGVPGRRSGGD*GQAQEWWQPGR*GCF 310
HTCR++ GCGVPGR SGGD*GQAQEWW+P *GC+
Sbjct: 421 HTCRVDSGCGVPGRWSGGD*GQAQEWWRPDP*GCW 525
Score = 147 bits (316), Expect(3) = 2e-053
Identities = 60/65 (92%), Positives = 62/65 (95%)
Frame = -2 / +2
Query: 593 KDCESDLSAVDIMQSSAGQWVPMQHSWGAIWRLDSGSALQGPFPLRLTFSSGRVLIASNA 414
+D ESDLSAVDIMQ+SAGQWVPMQHSWGAIWRLDSGSAL GPF LRLTFSSGRVLIASNA
Sbjct: 242 EDSESDLSAVDIMQNSAGQWVPMQHSWGAIWRLDSGSALHGPFHLRLTFSSGRVLIASNA 421
Query: 413 IPAGW 399
IPAGW
Sbjct: 422 IPAGW 436
Score = 143 bits (307), Expect(3) = 6e-053
Identities = 59/64 (92%), Positives = 60/64 (93%)
Frame = +1 / -1
Query: 400 HPAGMALLAMSTRPELNVKRRGNGP*RAEPESSLQIAPHECCIGTHCPAELCMMSTAERS 579
HPAGMALLAMST PELNV+RR NGP*RAEPESSLQIAPHECCIGTHCPAE CMMSTAERS
Sbjct: 435 HPAGMALLAMSTLPELNVRRRWNGP*RAEPESSLQIAPHECCIGTHCPAEFCMMSTAERS 256
Query: 580 LSQS 591
LS S
Sbjct: 255 LSLS 244
Score = 130 bits (278), Expect(2) = 3e-032
Identities = 57/116 (49%), Positives = 65/116 (56%)
Frame = +3 / -3
Query: 246 HNSQRQYHKHQKVIHQTSKCSRSSLXXXXXXXXXXXXSHRHSACPVRHTRIPSCRYGIAG 425
H + + + + + + SSL SHRHS CPVRHTR P CRYGIAG
Sbjct: 589 HQNSQHQYHKHQKVIHQTAKCSSSLMDPAATTPGPGPSHRHSTCPVRHTRSPPCRYGIAG 410
Query: 426 YEYPXXXXXXXXXXXXLKSRARVEPPDCTPRMLHRHPLPC*ALHDVDG*KIALAVL 593
YEYP +K RARVEPP+ TP MLHRHPL C LHDVDG KIA VL
Sbjct: 409 YEYPA*AECQAEVERAVKGRARVEPPNRTP*MLHRHPLSCRVLHDVDGRKIAFTVL 242
Score = 118 bits (253), Expect(3) = 9e-040
Identities = 52/94 (55%), Positives = 58/94 (61%)
Frame = -3 / +3
Query: 592 RTARAIFQPSTSCRAQQGNGCRCSIRGVQSGGSTXXXXXXXXXXXXXXXXXAGYS*PAMP 413
RT +AIF+PSTSCR +Q NGC CSI GV+ GGST AGYS*PAMP
Sbjct: 243 RTVKAIFRPSTSCRTRQDNGCLCSIHGVRFGGSTRALPFTARSTSA*HSAQAGYS*PAMP 422
Query: 412 YLQDGMRVWRTGQAEWR*LXXXXXXXXXXXVRLL 311
YLQ G+RVWRTGQ EWR*L +RLL
Sbjct: 423 YLQGGLRVWRTGQVEWR*LGPGPGVVAAGSMRLL 524
Score = 96.8 bits (205), Expect(3) = 6e-037
Identities = 34/41 (82%), Positives = 35/41 (85%)
Frame = +2 / -2
Query: 311 KQPHRPGCHHSWAWP*SPPLRLPGTPHPHSILQVWHCWL*V 433
+QPH G HHSWAWP*SPPL LPGTPHP S LQVWHCWL*V
Sbjct: 524 QQPHGSGRHHSWAWP*SPPLHLPGTPHPESTLQVWHCWL*V 402
Score = 73.9 bits (155), Expect(3) = 2e-053
Identities = 30/35 (85%), Positives = 32/35 (91%)
Frame = -1 / +1
Query: 309 WNI*RFGVSPSDVCGIGVVNYDANASLVVLRCKFN 205
WNI*+FGVSPSDVCGIGVVN DAN +LVVLR KFN
Sbjct: 523 WNI*QFGVSPSDVCGIGVVNSDANTALVVLRSKFN 627
Score = 73.9 bits (155), Expect(5) = 2e-066
Identities = 27/32 (84%), Positives = 27/32 (84%)
Frame = -3 / +3
Query: 313 LLEHLEVWCITF*CLWYWRCEL*CKCIFGSFE 218
LLEHL VWCITF*CLWYW CE *CK FGSFE
Sbjct: 519 LLEHLAVWCITF*CLWYWCCEF*CKYSFGSFE 614
Score = 70.7 bits (148), Expect(3) = 6e-053
Identities = 28/36 (77%), Positives = 31/36 (86%)
Frame = +3 / -3
Query: 207 *IYTSKLPKMHLHHNSQRQYHKHQKVIHQTSKCSRS 314
*I SKLPK++LH NSQ QYHKHQKVIHQT+KCS S
Sbjct: 625 *ICFSKLPKLYLHQNSQHQYHKHQKVIHQTAKCSSS 518
Score = 68.9 bits (144), Expect(3) = 6e-037
Identities = 32/56 (57%), Positives = 36/56 (64%)
Frame = +1 / -1
Query: 139 SQTSATRKHQNAHLKSLGSPKFVKFTPQNYQRCICIIIHNANTTNIRR*YTKPLNV 306
S S +++ H+ G VKF QNYQ CICI IHN NTTNIRR*YTK LNV
Sbjct: 693 STLSGLQENIKMHI*IPG*S*MVKFASQNYQSCICIRIHNTNTTNIRR*YTKLLNV 526
Score = 58.8 bits (122), Expect(3) = 9e-040
Identities = 26/34 (76%), Positives = 28/34 (82%)
Frame = -2 / +2
Query: 305 TFRGLVYHLLMFVVLAL*IMMQMHLW*F*GVNLT 204
TF LVYHLLMFVVL L*I+MQ+ LW*F* NLT
Sbjct: 527 TFSSLVYHLLMFVVLVL*ILMQIQLW*F*EANLT 628
Score = 33.1 bits (66), Expect(3) = 6e-053
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +1 / -2
Query: 91 AC**LNHNKNVNITPPSQTSATRKHQNAHLKSLGSPKFV 207
+C *L+HNKNV+ + A +K KSL SPK++
Sbjct: 740 SCW*LDHNKNVHNHNTQLSQAYKKTSKCTSKSLDSPKWL 624
Score = 29.5 bits (58), Expect(2) = 3e-032
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3 / -2
Query: 126 HHSPLSDLSYKKTSKCTSK 182
+H+ +YKKTSKCTSK
Sbjct: 704 NHNTQLSQAYKKTSKCTSK 648
Score = 27.6 bits (54), Expect(5) = 2e-066
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -2 / +3
Query: 182 FRCAF*CFLV 153
FRCAF*CFLV
Sbjct: 648 FRCAF*CFLV 677
Score = 27.6 bits (54), Expect(3) = 6e-037
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +2 / -2
Query: 494 RASRLHPTNXXXXXXXXXXXXXCRRLKDRSRSP 592
RAS+ HP N CRR KDR P
Sbjct: 341 RASKSHPMNAA*APIVLPSSA*CRRPKDRFHCP 243
Score = 27.2 bits (53), Expect(3) = 2e-053
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -1 / +2
Query: 186 GF*MCILMFSC 154
G *MCILMFSC
Sbjct: 644 GI*MCILMFSC 676
Score = 25.4 bits (49), Expect(3) = 9e-040
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -3 / +1
Query: 181 LDVHFDVFL* 152
LDVHFDVFL*
Sbjct: 649 LDVHFDVFL* 678
Score = 22.6 bits (43), Expect(5) = 2e-066
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -1 / +2
Query: 60 CKYTFGET 37
CKY FGET
Sbjct: 761 CKYAFGET 784
Score = 22.6 bits (43), Expect(5) = 2e-066
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -1 / +3
Query: 126 VNVFVVVELSA 94
VNVFVV+EL A
Sbjct: 705 VNVFVVIELPA 737
>gb|CW155769.1|CW155769 104_558_11146316_116_36370_074 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11146316, DNA
sequence
Length = 719
Score = 182 bits (392), Expect(2) = 2e-060
Identities = 71/95 (74%), Positives = 80/95 (84%)
Frame = -1 / +1
Query: 594 QGLRERSFSRRHHAELSRAMGADAAFVGCNLEARLWLCSSGPVPPPLDVQLRPGTHSQQC 415
+G +RSF RRHHAEL R MGA AAF+GC+LEARL LC S PVPPP D+QLR GTHSQQC
Sbjct: 349 RGQ*KRSFGRRHHAELGRTMGAYAAFMGCDLEARLGLCPSRPVPPPPDIQLRQGTHSQQC 528
Query: 414 HTCRMECGCGVPGRRSGGD*GQAQEWWQPGR*GCF 310
HTCR++ GCGVPGR SGGD*GQAQEWW+P *GC+
Sbjct: 529 HTCRVDSGCGVPGRWSGGD*GQAQEWWRPDP*GCW 633
Score = 147 bits (316), Expect(2) = 2e-047
Identities = 60/65 (92%), Positives = 62/65 (95%)
Frame = -2 / +2
Query: 593 KDCESDLSAVDIMQSSAGQWVPMQHSWGAIWRLDSGSALQGPFPLRLTFSSGRVLIASNA 414
+D ESDLSAVDIMQ+SAGQWVPMQHSWGAIWRLDSGSAL GPF LRLTFSSGRVLIASNA
Sbjct: 350 EDSESDLSAVDIMQNSAGQWVPMQHSWGAIWRLDSGSALHGPFHLRLTFSSGRVLIASNA 529
Query: 413 IPAGW 399
IPAGW
Sbjct: 530 IPAGW 544
Score = 143 bits (307), Expect(2) = 7e-048
Identities = 59/64 (92%), Positives = 60/64 (93%)
Frame = +1 / -3
Query: 400 HPAGMALLAMSTRPELNVKRRGNGP*RAEPESSLQIAPHECCIGTHCPAELCMMSTAERS 579
HPAGMALLAMST PELNV+RR NGP*RAEPESSLQIAPHECCIGTHCPAE CMMSTAERS
Sbjct: 543 HPAGMALLAMSTLPELNVRRRWNGP*RAEPESSLQIAPHECCIGTHCPAEFCMMSTAERS 364
Query: 580 LSQS 591
LS S
Sbjct: 363 LSLS 352
Score = 130 bits (278), Expect = 2e-029
Identities = 57/116 (49%), Positives = 65/116 (56%)
Frame = +3 / -2
Query: 246 HNSQRQYHKHQKVIHQTSKCSRSSLXXXXXXXXXXXXSHRHSACPVRHTRIPSCRYGIAG 425
H + + + + + + SSL SHRHS CPVRHTR P CRYGIAG
Sbjct: 697 HQNSQHQYHKHQKVIHQTAKCSSSLMDPAATTPGPGPSHRHSTCPVRHTRSPPCRYGIAG 518
Query: 426 YEYPXXXXXXXXXXXXLKSRARVEPPDCTPRMLHRHPLPC*ALHDVDG*KIALAVL 593
YEYP +K RARVEPP+ TP MLHRHPL C LHDVDG KIA VL
Sbjct: 517 YEYPA*AECQAEVERAVKGRARVEPPNRTP*MLHRHPLSCRVLHDVDGRKIAFTVL 350
Score = 118 bits (253), Expect(2) = 1e-035
Identities = 52/94 (55%), Positives = 58/94 (61%)
Frame = -3 / +3
Query: 592 RTARAIFQPSTSCRAQQGNGCRCSIRGVQSGGSTXXXXXXXXXXXXXXXXXAGYS*PAMP 413
RT +AIF+PSTSCR +Q NGC CSI GV+ GGST AGYS*PAMP
Sbjct: 351 RTVKAIFRPSTSCRTRQDNGCLCSIHGVRFGGSTRALPFTARSTSA*HSAQAGYS*PAMP 530
Query: 412 YLQDGMRVWRTGQAEWR*LXXXXXXXXXXXVRLL 311
YLQ G+RVWRTGQ EWR*L +RLL
Sbjct: 531 YLQGGLRVWRTGQVEWR*LGPGPGVVAAGSMRLL 632
Score = 96.8 bits (205), Expect(3) = 4e-034
Identities = 34/41 (82%), Positives = 35/41 (85%)
Frame = +2 / -1
Query: 311 KQPHRPGCHHSWAWP*SPPLRLPGTPHPHSILQVWHCWL*V 433
+QPH G HHSWAWP*SPPL LPGTPHP S LQVWHCWL*V
Sbjct: 632 QQPHGSGRHHSWAWP*SPPLHLPGTPHPESTLQVWHCWL*V 510
Score = 71.6 bits (150), Expect(2) = 2e-060
Identities = 26/31 (83%), Positives = 26/31 (83%)
Frame = -3 / +3
Query: 313 LLEHLEVWCITF*CLWYWRCEL*CKCIFGSF 221
LLEHL VWCITF*CLWYW CE *CK FGSF
Sbjct: 627 LLEHLAVWCITF*CLWYWCCEF*CKYSFGSF 719
Score = 68.4 bits (143), Expect(2) = 7e-048
Identities = 25/31 (80%), Positives = 28/31 (90%)
Frame = +3 / -2
Query: 222 KLPKMHLHHNSQRQYHKHQKVIHQTSKCSRS 314
KLPK++LH NSQ QYHKHQKVIHQT+KCS S
Sbjct: 718 KLPKLYLHQNSQHQYHKHQKVIHQTAKCSSS 626
Score = 62.5 bits (130), Expect(2) = 2e-047
Identities = 25/29 (86%), Positives = 27/29 (93%)
Frame = -1 / +1
Query: 309 WNI*RFGVSPSDVCGIGVVNYDANASLVV 223
WNI*+FGVSPSDVCGIGVVN DAN +LVV
Sbjct: 631 WNI*QFGVSPSDVCGIGVVNSDANTALVV 717
Score = 59.3 bits (123), Expect(3) = 4e-034
Identities = 24/28 (85%), Positives = 24/28 (85%)
Frame = +1 / -3
Query: 223 NYQRCICIIIHNANTTNIRR*YTKPLNV 306
NYQ CICI IHN NTTNIRR*YTK LNV
Sbjct: 717 NYQSCICIRIHNTNTTNIRR*YTKLLNV 634
Score = 52.4 bits (108), Expect(2) = 1e-035
Identities = 22/28 (78%), Positives = 24/28 (85%)
Frame = -2 / +2
Query: 305 TFRGLVYHLLMFVVLAL*IMMQMHLW*F 222
TF LVYHLLMFVVL L*I+MQ+ LW*F
Sbjct: 635 TFSSLVYHLLMFVVLVL*ILMQIQLW*F 718
Score = 27.6 bits (54), Expect(3) = 4e-034
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = +2 / -1
Query: 494 RASRLHPTNXXXXXXXXXXXXXCRRLKDRSRSP 592
RAS+ HP N CRR KDR P
Sbjct: 449 RASKSHPMNAA*APIVLPSSA*CRRPKDRFHCP 351
>gb|CW354064.1|CW354064 fsbb001f017b11k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f017b11, DNA
sequence
Length = 477
Score = 125 bits (268), Expect(4) = 2e-048
Identities = 46/59 (77%), Positives = 51/59 (86%)
Frame = -1 / +3
Query: 486 LCSSGPVPPPLDVQLRPGTHSQQCHTCRMECGCGVPGRRSGGD*GQAQEWWQPGR*GCF 310
LC S PVPPP D+QLR GTHSQQCHTCR++ GCGVPGR SGGD*GQAQEWW+P *GC+
Sbjct: 18 LCPSRPVPPPPDIQLRQGTHSQQCHTCRVDSGCGVPGRWSGGD*GQAQEWWRPDP*GCW 194
Score = 96.8 bits (205), Expect(3) = 4e-039
Identities = 34/41 (82%), Positives = 35/41 (85%)
Frame = +2 / -3
Query: 311 KQPHRPGCHHSWAWP*SPPLRLPGTPHPHSILQVWHCWL*V 433
+QPH G HHSWAWP*SPPL LPGTPHP S LQVWHCWL*V
Sbjct: 193 QQPHGSGRHHSWAWP*SPPLHLPGTPHPESTLQVWHCWL*V 71
Score = 73.9 bits (155), Expect(3) = 1e-028
Identities = 30/35 (85%), Positives = 32/35 (91%)
Frame = -1 / +3
Query: 309 WNI*RFGVSPSDVCGIGVVNYDANASLVVLRCKFN 205
WNI*+FGVSPSDVCGIGVVN DAN +LVVLR KFN
Sbjct: 192 WNI*QFGVSPSDVCGIGVVNSDANTALVVLRSKFN 296
Score = 73.9 bits (155), Expect(4) = 2e-048
Identities = 27/32 (84%), Positives = 27/32 (84%)
Frame = -3 / +2
Query: 313 LLEHLEVWCITF*CLWYWRCEL*CKCIFGSFE 218
LLEHL VWCITF*CLWYW CE *CK FGSFE
Sbjct: 188 LLEHLAVWCITF*CLWYWCCEF*CKYSFGSFE 283
Score = 70.7 bits (148), Expect(3) = 4e-039
Identities = 28/36 (77%), Positives = 31/36 (86%)
Frame = +3 / -1
Query: 207 *IYTSKLPKMHLHHNSQRQYHKHQKVIHQTSKCSRS 314
*I SKLPK++LH NSQ QYHKHQKVIHQT+KCS S
Sbjct: 294 *ICFSKLPKLYLHQNSQHQYHKHQKVIHQTAKCSSS 187
Score = 68.9 bits (144), Expect(2) = 1e-023
Identities = 32/56 (57%), Positives = 36/56 (64%)
Frame = +1 / -2
Query: 139 SQTSATRKHQNAHLKSLGSPKFVKFTPQNYQRCICIIIHNANTTNIRR*YTKPLNV 306
S S +++ H+ G VKF QNYQ CICI IHN NTTNIRR*YTK LNV
Sbjct: 362 STLSGLQENIKMHI*IPG*S*MVKFASQNYQSCICIRIHNTNTTNIRR*YTKLLNV 195
Score = 64.3 bits (134), Expect(3) = 1e-028
Identities = 27/29 (93%), Positives = 27/29 (93%)
Frame = -2 / +1
Query: 485 SALQGPFPLRLTFSSGRVLIASNAIPAGW 399
SAL GPF LRLTFSSGRVLIASNAIPAGW
Sbjct: 19 SALHGPFHLRLTFSSGRVLIASNAIPAGW 105
Score = 63.8 bits (133), Expect(3) = 1e-023
Identities = 27/42 (64%), Positives = 29/42 (69%)
Frame = -3 / +2
Query: 436 GYS*PAMPYLQDGMRVWRTGQAEWR*LXXXXXXXXXXXVRLL 311
GYS*PAMPYLQ G+RVWRTGQ EWR*L +RLL
Sbjct: 68 GYS*PAMPYLQGGLRVWRTGQVEWR*LGPGPGVVAAGSMRLL 193
Score = 61.6 bits (128), Expect(2) = 1e-023
Identities = 26/29 (89%), Positives = 27/29 (93%)
Frame = +1 / -2
Query: 400 HPAGMALLAMSTRPELNVKRRGNGP*RAE 486
HPAGMALLAMST PELNV+RR NGP*RAE
Sbjct: 104 HPAGMALLAMSTLPELNVRRRWNGP*RAE 18
Score = 58.8 bits (122), Expect(3) = 1e-023
Identities = 26/34 (76%), Positives = 28/34 (82%)
Frame = -2 / +1
Query: 305 TFRGLVYHLLMFVVLAL*IMMQMHLW*F*GVNLT 204
TF LVYHLLMFVVL L*I+MQ+ LW*F* NLT
Sbjct: 196 TFSSLVYHLLMFVVLVL*ILMQIQLW*F*EANLT 297
Score = 33.1 bits (66), Expect(3) = 4e-039
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +1 / -3
Query: 91 AC**LNHNKNVNITPPSQTSATRKHQNAHLKSLGSPKFV 207
+C *L+HNKNV+ + A +K KSL SPK++
Sbjct: 409 SCW*LDHNKNVHNHNTQLSQAYKKTSKCTSKSLDSPKWL 293
Score = 27.6 bits (54), Expect(4) = 2e-048
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -2 / +2
Query: 182 FRCAF*CFLV 153
FRCAF*CFLV
Sbjct: 317 FRCAF*CFLV 346
Score = 27.2 bits (53), Expect(3) = 1e-028
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = -1 / +1
Query: 186 GF*MCILMFSC 154
G *MCILMFSC
Sbjct: 313 GI*MCILMFSC 345
Score = 25.4 bits (49), Expect(3) = 1e-023
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -3 / +3
Query: 181 LDVHFDVFL* 152
LDVHFDVFL*
Sbjct: 318 LDVHFDVFL* 347
Score = 22.6 bits (43), Expect(4) = 2e-048
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -1 / +2
Query: 126 VNVFVVVELSA 94
VNVFVV+EL A
Sbjct: 374 VNVFVVIELPA 406
>gb|CW217959.1|CW217959 104_651_11195928_148_37066_090 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11195928, DNA
sequence
Length = 715
Score = 107 bits (229), Expect(2) = 1e-024
Identities = 38/51 (74%), Positives = 46/51 (90%)
Frame = -2 / -2
Query: 548 SAGQWVPMQHSWGAIWRLDSGSALQGPFPLRLTFSSGRVLIASNAIPAGWN 396
+ GQWVPMQ SWGA+W+++SG+ LQGPF +RLTFSSGRVL+A NAIPAGWN
Sbjct: 573 TTGQWVPMQQSWGAVWKINSGAVLQGPFNIRLTFSSGRVLVAGNAIPAGWN 421
Score = 81.3 bits (171), Expect(3) = 1e-023
Identities = 32/49 (65%), Positives = 34/49 (69%)
Frame = +1 / +2
Query: 397 FHPAGMALLAMSTRPELNVKRRGNGP*RAEPESSLQIAPHECCIGTHCP 543
FHPAGMAL A ST PEL V+R GP R PE APH+CCIGTHCP
Sbjct: 422 FHPAGMALPATSTLPELKVRRMLKGPWRTAPELIFHTAPHDCCIGTHCP 568
Score = 44.1 bits (90), Expect(3) = 1e-023
Identities = 18/37 (48%), Positives = 19/37 (51%)
Frame = +2 / +3
Query: 311 KQPHRPGCHHSWAWP*SPPLRLPGTPHPHSILQVWHC 421
+QP G H S AWP P RL GT S QVW C
Sbjct: 336 RQPRSAGRHRSGAWPSPQPRRLTGTRRRRSTPQVWRC 446
Score = 25.8 bits (50), Expect(2) = 1e-024
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2 / -2
Query: 593 KDCESDLSAVDIMQSSAG 540
+D +SDL +VDIMQ G
Sbjct: 630 EDSDSDLYSVDIMQQGQG 577
Score = 23.1 bits (44), Expect(3) = 1e-023
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +3 / +1
Query: 552 LHDVDG*KIALAVL 593
LHDV G ++A+AVL
Sbjct: 589 LHDVHGVEVAVAVL 630
>gb|CW435340.1|CW435340 fsbb001f151h04k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f151h04, DNA
sequence
Length = 598
Score = 107 bits (229), Expect(2) = 2e-024
Identities = 38/51 (74%), Positives = 46/51 (90%)
Frame = -2 / -2
Query: 548 SAGQWVPMQHSWGAIWRLDSGSALQGPFPLRLTFSSGRVLIASNAIPAGWN 396
+ GQWVPMQ SWGA+W+++SG+ LQGPF +RLTFSSGRVL+A NAIPAGWN
Sbjct: 336 TTGQWVPMQQSWGAVWKINSGAVLQGPFNIRLTFSSGRVLVAGNAIPAGWN 184
Score = 81.3 bits (171), Expect(3) = 1e-023
Identities = 32/49 (65%), Positives = 34/49 (69%)
Frame = +1 / +2
Query: 397 FHPAGMALLAMSTRPELNVKRRGNGP*RAEPESSLQIAPHECCIGTHCP 543
FHPAGMAL A ST PEL V+R GP R PE APH+CCIGTHCP
Sbjct: 185 FHPAGMALPATSTLPELKVRRMLKGPWRTAPELIFHTAPHDCCIGTHCP 331
Score = 44.1 bits (90), Expect(3) = 1e-023
Identities = 18/37 (48%), Positives = 19/37 (51%)
Frame = +2 / +3
Query: 311 KQPHRPGCHHSWAWP*SPPLRLPGTPHPHSILQVWHC 421
+QP G H S AWP P RL GT S QVW C
Sbjct: 99 RQPRSAGRHRSGAWPSPQPRRLTGTRRRRSTPQVWRC 209
Score = 25.8 bits (50), Expect(2) = 2e-024
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2 / -2
Query: 593 KDCESDLSAVDIMQSSAG 540
+D +SDL +VDIMQ G
Sbjct: 393 EDSDSDLYSVDIMQQGQG 340
Score = 23.1 bits (44), Expect(3) = 1e-023
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +3 / +1
Query: 552 LHDVDG*KIALAVL 593
LHDV G ++A+AVL
Sbjct: 352 LHDVHGVEVAVAVL 393
>gb|CW253166.1|CW253166 104_716_11224935_116_35104_054 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11224935, DNA
sequence
Length = 674
Score = 104 bits (222), Expect = 1e-021
Identities = 39/65 (60%), Positives = 50/65 (76%)
Frame = -2 / -3
Query: 593 KDCESDLSAVDIMQSSAGQWVPMQHSWGAIWRLDSGSALQGPFPLRLTFSSGRVLIASNA 414
+D + DLSAVD+M++ + W PM H+WGA WRL++G L+ PF LRLT SGRVL+ASNA
Sbjct: 507 EDDDGDLSAVDLMEAGSSVWTPMAHNWGATWRLNNGRRLRAPFGLRLTSDSGRVLVASNA 328
Query: 413 IPAGW 399
IPA W
Sbjct: 327 IPAAW 313
>gb|CW376698.1|CW376698 fsbb001f054l06f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f054l06, DNA
sequence
Length = 588
Score = 104 bits (222), Expect = 1e-021
Identities = 39/65 (60%), Positives = 50/65 (76%)
Frame = -2 / +2
Query: 593 KDCESDLSAVDIMQSSAGQWVPMQHSWGAIWRLDSGSALQGPFPLRLTFSSGRVLIASNA 414
+D + DLSAVD+M++ + W PM H+WGA WRL++G L+ PF LRLT SGRVL+ASNA
Sbjct: 287 EDDDGDLSAVDLMEAGSSVWTPMAHNWGATWRLNNGRRLRAPFGLRLTSDSGRVLVASNA 466
Query: 413 IPAGW 399
IPA W
Sbjct: 467 IPAAW 481
>gb|CW480555.1|CW480555 fsbb001f239k22f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f239k22, DNA
sequence
Length = 361
Score = 104 bits (222), Expect = 1e-021
Identities = 39/65 (60%), Positives = 50/65 (76%)
Frame = -2 / +3
Query: 593 KDCESDLSAVDIMQSSAGQWVPMQHSWGAIWRLDSGSALQGPFPLRLTFSSGRVLIASNA 414
+D + DLSAVD+M++ + W PM H+WGA WRL++G L+ PF LRLT SGRVL+ASNA
Sbjct: 54 EDDDGDLSAVDLMEAGSSVWTPMAHNWGATWRLNNGRRLRAPFGLRLTSDSGRVLVASNA 233
Query: 413 IPAGW 399
IPA W
Sbjct: 234 IPAAW 248
>gb|CD210102.1|CD210102 HS1_57_F11.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_57_F11_A012 3', mRNA sequence
Length = 692
Score = 104 bits (222), Expect = 1e-021
Identities = 39/65 (60%), Positives = 50/65 (76%)
Frame = -2 / +2
Query: 593 KDCESDLSAVDIMQSSAGQWVPMQHSWGAIWRLDSGSALQGPFPLRLTFSSGRVLIASNA 414
+D + DLSAVD+M++ + W PM H+WGA WRL++G L+ PF LRLT SGRVL+ASNA
Sbjct: 119 EDDDGDLSAVDLMEAGSSVWTPMAHNWGATWRLNNGRRLRAPFGLRLTSDSGRVLVASNA 298
Query: 413 IPAGW 399
IPA W
Sbjct: 299 IPAAW 313
>gb|CD221661.1|CD221661 CCC1_70_E11.b1_A007 Callus culture/cell suspension Sorghum bicolor
cDNA clone CCC1_70_E11_A007 3', mRNA sequence
Length = 561
Score = 104 bits (222), Expect = 1e-021
Identities = 39/65 (60%), Positives = 50/65 (76%)
Frame = -2 / +3
Query: 593 KDCESDLSAVDIMQSSAGQWVPMQHSWGAIWRLDSGSALQGPFPLRLTFSSGRVLIASNA 414
+D + DLSAVD+M++ + W PM H+WGA WRL++G L+ PF LRLT SGRVL+ASNA
Sbjct: 24 EDDDGDLSAVDLMEAGSSVWTPMAHNWGATWRLNNGRRLRAPFGLRLTSDSGRVLVASNA 203
Query: 413 IPAGW 399
IPA W
Sbjct: 204 IPAAW 218
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 755,228,515
Number of Sequences: 832831
Number of extensions: 11298769
Number of successful extensions: 136213
Number of sequences better than 1.0e-020: 10
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 17229097872
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)