TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3064721.2.2
(595 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM329584.1|BM329584 PIC1_40_E09.g1_A002 Pathogen-infecte... 207 1e-052
gb|CF487333.1|CF487333 POL1_43_D11.b1_A002 Pollen Sorghum b... 195 5e-049
gb|CN149194.1|CN149194 WOUND1_61_F10.b1_A002 Wounded leaves... 194 7e-049
gb|BF587532.1|BF587532 FM1_37_E11.g1_A003 Floral-Induced Me... 193 1e-048
gb|CF070980.1|CF070980 FE1_14_F12.g1_A002 Iron-deficient se... 193 2e-048
gb|BG101797.1|BG101797 RHIZ2_22_E09.g1_A003 Rhizome2 (RHIZ2... 191 9e-048
gb|CW144377.1|CW144377 104_536_11137911_148_34962_056 Sorgh... 155 2e-043
gb|CN140420.1|CN140420 OX1_36_B10.b1_A002 Oxidatively-stres... 171 8e-042
gb|CD234655.1|CD234655 SS1_17_C07.b1_A012 Salt-stressed see... 161 9e-039
gb|CN127460.1|CN127460 RHOH1_23_D06.b1_A002 Acid- and alkal... 161 9e-039
gb|CX612893.1|CX612893 GABR1_5_C04.b1_A002 GA- or brassinol... 161 9e-039
gb|BM331533.1|BM331533 PIC1_72_D10.g1_A002 Pathogen-infecte... 160 1e-038
gb|CW285991.1|CW285991 104_763_11410641_116_35511_039 Sorgh... 157 1e-037
gb|BI139893.1|BI139893 IP1_47_A12.b1_A002 Immature pannicle... 120 1e-032
gb|CW381875.1|CW381875 fsbb001f063h19k0 Sorghum methylation... 133 2e-030
gb|CW306008.1|CW306008 104_791_11466607_148_36273_024 Sorgh... 111 2e-026
gb|CW285992.1|CW285992 104_763_11410641_148_35507_039 Sorgh... 118 6e-026
gb|CL158360.1|CL158360 104_347_10803488_114_31377_080 Sorgh... 111 7e-024
gb|CL158361.1|CL158361 104_347_10803488_116_31378_080 Sorgh... 111 7e-024
gb|CF482490.1|CF482490 POL1_7_F08.b1_A002 Pollen Sorghum bi... 111 1e-023
gb|CF480371.1|CF480371 POL1_65_H05.b1_A002 Pollen Sorghum b... 107 1e-022
gb|CD210962.1|CD210962 HS1_58_B05.b1_A012 Heat-shocked seed... 99 4e-022
gb|BI212063.1|BI212063 IP1_61_B03.g1_A002 Immature pannicle... 99 4e-022
gb|CF769345.1|CF769345 DSBF1_1_C05.b1_A010 Drought-stressed... 104 2e-021
gb|CF485968.1|CF485968 POL1_34_H03.g1_A002 Pollen Sorghum b... 101 7e-021
>gb|BM329584.1|BM329584 PIC1_40_E09.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 628
Score = 207 bits (446), Expect = 1e-052
Identities = 77/95 (81%), Positives = 86/95 (90%)
Frame = +3 / +3
Query: 63 QKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVIHYNGN 242
QKLNE+R LWKLGTLP GL+TFWN+TFPL RSWH LGLGYNP+VN +DI RAAVIHYNGN
Sbjct: 3 QKLNEDRSLWKLGTLPPGLITFWNKTFPLSRSWHVLGLGYNPHVNSRDIERAAVIHYNGN 182
Query: 243 LKPWLEIGLPKYRKYWSAHVNYDQVFLRECNINP* 347
+KPWLEIGLPKYR YWS +++YDQ FLRECNINP*
Sbjct: 183 MKPWLEIGLPKYRSYWSKYLDYDQSFLRECNINP* 287
Score = 126 bits (270), Expect = 3e-028
Identities = 58/96 (60%), Positives = 64/96 (66%)
Frame = -1 / -1
Query: 349 VQGFMLHSRRNT*S*LTCADQYLRYFGNPISSQGFRFPL*WMTAARLISLTLTFGLYPSP 170
+ G MLHSRR S* DQ LRY G PISSQGF PL* MTAAR +SL T GL P P
Sbjct: 289 LHGLMLHSRRKDWS*SRYLDQ*LRYLGRPISSQGFMLPL*CMTAARSMSLLFT*GL*PRP 110
Query: 169 N*CHERSRGNVRFQKVTRPAGRVPSFHNSLFSFNFC 62
CH+R RGNV FQ V +P GRVPSF + L S +FC
Sbjct: 109 RTCHDRLRGNVLFQNVIKPGGRVPSFQSDLSSLSFC 2
>gb|CF487333.1|CF487333 POL1_43_D11.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_43_D11_A002 3', mRNA sequence
Length = 661
Score = 195 bits (420), Expect = 5e-049
Identities = 66/113 (58%), Positives = 91/113 (80%)
Frame = +3 / +2
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N+FDL +W+K++IT +YH WQ LNE+R LWKLGTLP GL+TF+ T PLD+SWH LGLGY
Sbjct: 68 NIFDLREWKKKDITGIYHKWQNLNEDRALWKLGTLPPGLLTFYKLTHPLDKSWHVLGLGY 247
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNIN 341
NP+++ +I AAV+HYNGN+KPWLE+ + KYR YW+ ++ YD ++R CN++
Sbjct: 248 NPSIDRSEIDSAAVVHYNGNMKPWLELAMTKYRPYWTKYIKYDHPYIRGCNLS 406
Score = 104 bits (222), Expect = 1e-021
Identities = 55/116 (47%), Positives = 62/116 (53%)
Frame = -1 / -2
Query: 349 VQGFMLHSRRNT*S*LTCADQYLRYFGNPISSQGFRFPL*WMTAARLISLTLTFGLYPSP 170
+ LH R *S L QY RY S+ GF FPL* TAA IS GLYP+P
Sbjct: 414 IYSLKLHPRM*G*SYLIYLVQYGRYLVIASSNHGFMFPL**TTAALSISERSMLGLYPNP 235
Query: 169 N*CHERSRGNVRFQKVTRPAGRVPSFHNSLFSFNFCQVW*TSVMFCFLQSPKSNMF 2
CH+ S G V KV RP G VPSF +L SF FC +W* V+ F S KS MF
Sbjct: 234 RTCHDLSSGCVNL*KVKRPGGSVPSFQRALSSFRFCHLW*IPVISFFFHSLKSKMF 67
>gb|CN149194.1|CN149194 WOUND1_61_F10.b1_A002 Wounded leaves Sorghum bicolor cDNA clone
WOUND1_61_F10_A002 3', mRNA sequence
Length = 807
Score = 194 bits (419), Expect = 7e-049
Identities = 66/114 (57%), Positives = 91/114 (79%)
Frame = +3 / +2
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N FDL WR++ TE YH WQ NENR LWKLGTLP GL+TF++ T PL+RSWH LGLGY
Sbjct: 206 NFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLERSWHVLGLGY 385
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNINP 344
NP++++++IR AAV+H+NGN+KPWL+IG+ ++R W+ +V+YD ++R+CN P
Sbjct: 386 NPSISMEEIRNAAVVHFNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQCNFAP 547
Score = 104 bits (221), Expect = 2e-021
Identities = 50/88 (56%), Positives = 54/88 (61%)
Frame = -1 / -1
Query: 265 PISSQGFRFPL*WMTAARLISLTLTFGLYPSPN*CHERSRGNVRFQKVTRPAGRVPSFHN 86
P+SSQGF PL TAA LIS L GLYPSP C + SRG V KV +P G VPSFHN
Sbjct: 468 PMSSQGFMLPLKCTTAAFLISSMLMLGLYPSPRTCQDLSRGFVVE*KVIKPGGSVPSFHN 289
Query: 85 SLFSFNFCQVW*TSVMFCFLQSPKSNMF 2
FSF FCQ W SV F LQ +S F
Sbjct: 288 VRFSF*FCQ*WYCSVHFSLLQESRSKKF 205
>gb|BF587532.1|BF587532 FM1_37_E11.g1_A003 Floral-Induced Meristem 1 (FM1) Sorghum
propinquum cDNA, mRNA sequence
Length = 632
Score = 193 bits (417), Expect = 1e-048
Identities = 65/114 (57%), Positives = 91/114 (79%)
Frame = +3 / +1
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N FDL WR++ TE YH WQ NENR LWKLGTLP GL+TF++ T PL++SWH LGLGY
Sbjct: 13 NFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPXGLITFYSTTKPLEKSWHVLGLGY 192
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNINP 344
NP++++++IR AAV+H+NGN+KPWL+IG+ ++R W+ +V+YD ++R+CN P
Sbjct: 193 NPSISMEEIRNAAVVHFNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQCNFAP 354
Score = 103 bits (220), Expect = 2e-021
Identities = 50/88 (56%), Positives = 54/88 (61%)
Frame = -1 / -1
Query: 265 PISSQGFRFPL*WMTAARLISLTLTFGLYPSPN*CHERSRGNVRFQKVTRPAGRVPSFHN 86
P+SSQGF PL TAA LIS L GLYPSP C + SRG V KV +P G VPSFHN
Sbjct: 275 PMSSQGFMLPLKCTTAAFLISSMLMLGLYPSPRTCQDFSRGFVVE*KVIKPXGSVPSFHN 96
Query: 85 SLFSFNFCQVW*TSVMFCFLQSPKSNMF 2
FSF FCQ W SV F LQ +S F
Sbjct: 95 VRFSF*FCQ*WYCSVHFSLLQESRSKKF 12
>gb|CF070980.1|CF070980 FE1_14_F12.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA
clone FE1_14_F12_A002 5', mRNA sequence
Length = 692
Score = 193 bits (416), Expect = 2e-048
Identities = 65/114 (57%), Positives = 91/114 (79%)
Frame = +3 / -1
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N FDL WR++ TE YH WQ NENR LWKLGTLP GL+TF++ T PL++SWH LGLGY
Sbjct: 644 NFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLEKSWHVLGLGY 465
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNINP 344
NP++++++IR AAV+H+NGN+KPWL+IG+ ++R W+ +V+YD ++R+CN P
Sbjct: 464 NPSISMEEIRNAAVVHFNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQCNFAP 303
Score = 102 bits (218), Expect = 4e-021
Identities = 50/88 (56%), Positives = 54/88 (61%)
Frame = -1 / +1
Query: 265 PISSQGFRFPL*WMTAARLISLTLTFGLYPSPN*CHERSRGNVRFQKVTRPAGRVPSFHN 86
P+SSQGF PL TAA LIS L GLYPSP C + SRG V KV +P G VPSFHN
Sbjct: 382 PMSSQGFILPLKCTTAAFLISSMLMLGLYPSPRTCQDFSRGFVVE*KVIKPGGSVPSFHN 561
Query: 85 SLFSFNFCQVW*TSVMFCFLQSPKSNMF 2
FSF FCQ W SV F LQ +S F
Sbjct: 562 VRFSF*FCQ*WYCSVHFSLLQESRSKKF 645
>gb|BG101797.1|BG101797 RHIZ2_22_E09.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 591
Score = 191 bits (411), Expect = 9e-048
Identities = 66/111 (59%), Positives = 86/111 (77%)
Frame = +3 / +3
Query: 9 FDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGYNP 188
FDL +W+ ++IT +YH WQ +NENRLLWKLGTLP GL+TF+ T PLD+SWH LGLGYNP
Sbjct: 3 FDLEEWKNKDITGIYHKWQNMNENRLLWKLGTLPPGLLTFYKLTHPLDKSWHVLGLGYNP 182
Query: 189 NVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNIN 341
+ +I AAVIHYNGN+KPWLEI + KYR YW+ ++NY+ ++ C I+
Sbjct: 183 TIERSEIDNAAVIHYNGNMKPWLEIAMTKYRPYWTKYINYEHPYIHGCKIS 335
Score = 114 bits (244), Expect = 1e-024
Identities = 52/91 (57%), Positives = 57/91 (62%)
Frame = -1 / -3
Query: 280 RYFGNPISSQGFRFPL*WMTAARLISLTLTFGLYPSPN*CHERSRGNVRFQKVTRPAGRV 101
RYF ISS GF PL*WMTAA IS GLYP P+ CH+ SRG V KV P G V
Sbjct: 274 RYFVIAISSHGFMLPL*WMTAALSISERSMVGLYPKPSTCHDLSRGCVSL*KVRSPGGNV 95
Query: 100 PSFHNSLFSFNFCQVW*TSVMFCFLQSPKSN 8
PSF +SLFSF FC +W* VM F S +SN
Sbjct: 94 PSFQSSLFSFMFCHLW*IPVMSLFFHSSRSN 2
>gb|CW144377.1|CW144377 104_536_11137911_148_34962_056 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11137911, DNA
sequence
Length = 622
Score = 155 bits (333), Expect(2) = 2e-043
Identities = 53/90 (58%), Positives = 72/90 (80%)
Frame = +3 / +2
Query: 72 NENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVIHYNGNLKP 251
NE+R LWKLGTLP GL+TF+ T PLD+SWH LGLGYNP+++ +I AAV+HYNGN+KP
Sbjct: 278 NEDRALWKLGTLPPGLLTFYKLTHPLDKSWHVLGLGYNPSIDRSEIDSAAVVHYNGNMKP 457
Query: 252 WLEIGLPKYRKYWSAHVNYDQVFLRECNIN 341
WLE+ + KYR YW+ ++ YD ++R CN++
Sbjct: 458 WLELAMTKYRPYWTKYIKYDHPYIRGCNLS 547
Score = 42.8 bits (87), Expect(2) = 2e-043
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = +3 / +2
Query: 3 NMFDLGDWRKQNITEVYHTWQKL 71
N+FDL +W+K++IT +YH WQ L
Sbjct: 74 NIFDLREWKKKDITGIYHKWQNL 142
>gb|CN140420.1|CN140420 OX1_36_B10.b1_A002 Oxidatively-stressed leaves and roots Sorghum
bicolor cDNA clone OX1_36_B10_A002 3', mRNA sequence
Length = 836
Score = 171 bits (368), Expect = 8e-042
Identities = 58/99 (58%), Positives = 80/99 (80%)
Frame = +3 / +3
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N FDL WR++ TE YH WQ NENR LWKLGTLP GL+TF++ T PL++SWH LGLGY
Sbjct: 309 NFFDLDSWRREKCTEQYHYWQNQNENRTLWKLGTLPPGLITFYSTTKPLEKSWHVLGLGY 488
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAH 299
NP++++++IR AAV+H+NGN+KPWL+IG+ ++R W+ +
Sbjct: 489 NPSISMEEIRNAAVVHFNGNMKPWLDIGMNQFRHLWTKY 605
Score = 103 bits (220), Expect = 2e-021
Identities = 50/88 (56%), Positives = 54/88 (61%)
Frame = -1 / -2
Query: 265 PISSQGFRFPL*WMTAARLISLTLTFGLYPSPN*CHERSRGNVRFQKVTRPAGRVPSFHN 86
P+SSQGF PL TAA LIS L GLYPSP C + SRG V KV +P G VPSFHN
Sbjct: 571 PMSSQGFMLPLKCTTAAFLISSMLMLGLYPSPRTCQDFSRGFVVE*KVIKPGGSVPSFHN 392
Query: 85 SLFSFNFCQVW*TSVMFCFLQSPKSNMF 2
FSF FCQ W SV F LQ +S F
Sbjct: 391 VRFSF*FCQ*WYCSVHFSLLQESRSKKF 308
>gb|CD234655.1|CD234655 SS1_17_C07.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA
clone SS1_17_C07_A012 3', mRNA sequence
Length = 683
Score = 161 bits (346), Expect = 9e-039
Identities = 57/113 (50%), Positives = 82/113 (72%)
Frame = +3 / +3
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N+FDL WRK+N T +YH WQ+ N + LLW+ GTLPAGL+TF+ PLDR WH LGLGY
Sbjct: 18 NIFDLIAWRKENATSLYHYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGY 197
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNIN 341
+ +++ + I AAV+HYNGN+KPWL++ + +Y+ W +VN ++REC ++
Sbjct: 198 DVDIDDRLIESAAVVHYNGNMKPWLKLAIRRYKYIWERYVNISHPYVRECMLH 356
>gb|CN127460.1|CN127460 RHOH1_23_D06.b1_A002 Acid- and alkaline-treated roots Sorghum
bicolor cDNA clone RHOH1_23_D06_A002 3', mRNA sequence
Length = 814
Score = 161 bits (346), Expect = 9e-039
Identities = 57/113 (50%), Positives = 82/113 (72%)
Frame = +3 / +1
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N+FDL WRK+N T +YH WQ+ N + LLW+ GTLPAGL+TF+ PLDR WH LGLGY
Sbjct: 139 NIFDLIAWRKENATSLYHYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGY 318
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNIN 341
+ +++ + I AAV+HYNGN+KPWL++ + +Y+ W +VN ++REC ++
Sbjct: 319 DVDIDDRLIESAAVVHYNGNMKPWLKLAIRRYKYIWERYVNISHPYVRECMLH 477
>gb|CX612893.1|CX612893 GABR1_5_C04.b1_A002 GA- or brassinolide-treated seedlings Sorghum
bicolor cDNA clone GABR1_5_C04_A002 3', mRNA sequence
Length = 762
Score = 161 bits (346), Expect = 9e-039
Identities = 57/113 (50%), Positives = 82/113 (72%)
Frame = +3 / +1
Query: 3 NMFDLGDWRKQNITEVYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGY 182
N+FDL WRK+N T +YH WQ+ N + LLW+ GTLPAGL+TF+ PLDR WH LGLGY
Sbjct: 97 NIFDLIAWRKENATSLYHYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGY 276
Query: 183 NPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRECNIN 341
+ +++ + I AAV+HYNGN+KPWL++ + +Y+ W +VN ++REC ++
Sbjct: 277 DVDIDDRLIESAAVVHYNGNMKPWLKLAIRRYKYIWERYVNISHPYVRECMLH 435
>gb|BM331533.1|BM331533 PIC1_72_D10.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum
bicolor cDNA, mRNA sequence
Length = 596
Score = 160 bits (345), Expect = 1e-038
Identities = 55/95 (57%), Positives = 75/95 (78%)
Frame = +3 / +2
Query: 48 VYHTWQKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVI 227
+YH WQ LNE+R LWKLGTLP GL+TF+N T+PL+R+WH LGLGY+P V++ +I AAV+
Sbjct: 2 IYHYWQDLNEDRKLWKLGTLPPGLITFYNLTYPLNRTWHVLGLGYDPAVDIAEIDNAAVV 181
Query: 228 HYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLREC 332
HYNGN KPWL++ + KY+ YWS +V+ D ++ C
Sbjct: 182 HYNGNYKPWLDLAISKYKTYWSKYVDVDNSHVQHC 286
>gb|CW285991.1|CW285991 104_763_11410641_116_35511_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11410641, DNA
sequence
Length = 612
Score = 157 bits (338), Expect = 1e-037
Identities = 56/90 (62%), Positives = 70/90 (77%)
Frame = +3 / +2
Query: 72 NENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVIHYNGNLKP 251
NENRLLWKLGTLP GL+TF+ T PLD+SWH LGLGYNP + +I AAVIHYNGN+KP
Sbjct: 62 NENRLLWKLGTLPPGLLTFYKLTHPLDKSWHVLGLGYNPTIERSEIDNAAVIHYNGNMKP 241
Query: 252 WLEIGLPKYRKYWSAHVNYDQVFLRECNIN 341
WLEI + KYR YW+ ++NY+ ++ C I+
Sbjct: 242 WLEIAMTKYRPYWTKYINYEHPYIHGCKIS 331
>gb|BI139893.1|BI139893 IP1_47_A12.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 598
Score = 120 bits (256), Expect(2) = 1e-032
Identities = 43/92 (46%), Positives = 56/92 (60%)
Frame = +3 / +2
Query: 63 QKLNENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVIHYNGN 242
+ L LWK GTLP L+ F +D SWH LGLGY +++ +RRAAVIHYNG
Sbjct: 284 ENLKSGLTLWKFGTLPPALIAFRGHVHGIDPSWHLLGLGYQDKTDIESVRRAAVIHYNGQ 463
Query: 243 LKPWLEIGLPKYRKYWSAHVNYDQVFLRECNI 338
KPWL+I + +W+ HVNY F+R C+I
Sbjct: 464 CKPWLDIAFKNLQPFWTKHVNYSXDFVRNCHI 559
Score = 40.5 bits (82), Expect(2) = 1e-032
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +3 / +2
Query: 3 NMFDLGDWRKQNITEVYHTWQKLN 74
N+FDL WRK NI + YH W K N
Sbjct: 218 NIFDLAAWRKTNIRDTYHFWLKEN 289
>gb|CW381875.1|CW381875 fsbb001f063h19k0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f063h19, DNA
sequence
Length = 722
Score = 133 bits (286), Expect = 2e-030
Identities = 48/89 (53%), Positives = 66/89 (74%)
Frame = +3 / +2
Query: 87 LWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVIHYNGNLKPWLEIG 266
LWK G+LP G +TF+NRT PLD WH GLG++ ++ ++ A+VIHY+G LKPWLEI
Sbjct: 77 LWKPGSLPLGQLTFYNRTLPLDHRWHVFGLGHDFSIGRNELESASVIHYSGKLKPWLEIS 256
Query: 267 LPKYRKYWSAHVNYDQVFLRECNINP*TA 353
+PKYR YW+ ++NYD L++CNI+ * A
Sbjct: 257 IPKYRDYWNRYLNYDNPHLQQCNIHG*RA 343
>gb|CW306008.1|CW306008 104_791_11466607_148_36273_024 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11466607, DNA
sequence
Length = 675
Score = 111 bits (238), Expect(2) = 2e-026
Identities = 39/77 (50%), Positives = 57/77 (74%)
Frame = +3 / -1
Query: 105 LPAGLVTFWNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRK 284
LP GL+TF+ +T PLD+SWH +GLGYNP++ +DI AAVIH+NGN+KPWL++ +Y+
Sbjct: 252 LPVGLMTFYGKTKPLDKSWHVMGLGYNPHIRPEDIGGAAVIHFNGNMKPWLDVAFNQYKH 73
Query: 285 YWSAHVNYDQVFLRECN 335
W+ +V+ + FL N
Sbjct: 72 LWTKYVDTEMEFLTISN 22
Score = 29.5 bits (58), Expect(2) = 2e-026
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = +3 / -3
Query: 3 NMFDLGDWRKQNITEVYHTWQKL 71
N+FDL WR++ T+ +H + ++
Sbjct: 466 NVFDLQGWRREQCTQQFHRFMEM 398
>gb|CW285992.1|CW285992 104_763_11410641_148_35507_039 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11410641, DNA
sequence
Length = 694
Score = 118 bits (253), Expect = 6e-026
Identities = 41/73 (56%), Positives = 54/73 (73%)
Frame = +3 / -1
Query: 123 TFWNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHV 302
TF+ T PLD+SWH LGLGYNP + +I AAVIHYNGN+KPWLEI + KYR YW+ ++
Sbjct: 694 TFYKLTHPLDKSWHVLGLGYNPTMXRSEIDNAAVIHYNGNMKPWLEIAMTKYRPYWTKYI 515
Query: 303 NYDQVFLRECNIN 341
NY+ ++ C I+
Sbjct: 514 NYEHPYIHGCKIS 476
>gb|CL158360.1|CL158360 104_347_10803488_114_31377_080 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10803488, DNA
sequence
Length = 727
Score = 111 bits (238), Expect = 7e-024
Identities = 39/77 (50%), Positives = 59/77 (76%)
Frame = +3 / +2
Query: 105 LPAGLVTFWNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRK 284
L AGL++F+ T PLD+SWH +GLGYNP+++ + IR AAVIH++GN+KPWL++ L +Y+
Sbjct: 470 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAVIHFDGNMKPWLDVALNQYKA 649
Query: 285 YWSAHVNYDQVFLRECN 335
W+ +V+ + FL CN
Sbjct: 650 LWTKYVDTEMEFLTLCN 700
>gb|CL158361.1|CL158361 104_347_10803488_116_31378_080 Sorghum methylation-filtered library
(LibID: 104) Sorghum bicolor genomic clone 10803488, DNA
sequence
Length = 731
Score = 111 bits (238), Expect = 7e-024
Identities = 39/77 (50%), Positives = 59/77 (76%)
Frame = +3 / -3
Query: 105 LPAGLVTFWNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRK 284
L AGL++F+ T PLD+SWH +GLGYNP+++ + IR AAVIH++GN+KPWL++ L +Y+
Sbjct: 366 LTAGLMSFYGNTKPLDKSWHVMGLGYNPSISPEAIRSAAVIHFDGNMKPWLDVALNQYKA 187
Query: 285 YWSAHVNYDQVFLRECN 335
W+ +V+ + FL CN
Sbjct: 186 LWTKYVDTEMEFLTLCN 136
>gb|CF482490.1|CF482490 POL1_7_F08.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_7_F08_A002 3', mRNA sequence
Length = 521
Score = 111 bits (236), Expect = 1e-023
Identities = 34/65 (52%), Positives = 55/65 (84%)
Frame = +3 / +2
Query: 150 DRSWHQLGLGYNPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRE 329
++SWH LGLGYNP++++++IR AAV+H+NGN+KPWL+IG+ ++R W+ +V+YD ++R+
Sbjct: 2 EKSWHVLGLGYNPSISMEEIRNAAVVHFNGNMKPWLDIGMNQFRHLWTKYVDYDDSYIRQ 181
Query: 330 CNINP 344
CN P
Sbjct: 182 CNFAP 196
>gb|CF480371.1|CF480371 POL1_65_H05.b1_A002 Pollen Sorghum bicolor cDNA clone
POL1_65_H05_A002 3', mRNA sequence
Length = 430
Score = 107 bits (229), Expect = 1e-022
Identities = 36/64 (56%), Positives = 48/64 (75%)
Frame = +3 / +2
Query: 150 DRSWHQLGLGYNPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWSAHVNYDQVFLRE 329
D+SWH LGLGYNP + +I AAVIHYNGN+KPWLEI + KYR YW+ ++NY+ ++
Sbjct: 2 DKSWHVLGLGYNPTIERSEIDNAAVIHYNGNMKPWLEIAMTKYRPYWTKYINYEPPYIHG 181
Query: 330 CNIN 341
C I+
Sbjct: 182 CKIS 193
>gb|CD210962.1|CD210962 HS1_58_B05.b1_A012 Heat-shocked seedlings Sorghum bicolor cDNA
clone HS1_58_B05_A012 3', mRNA sequence
Length = 733
Score = 99.1 bits (210), Expect(2) = 4e-022
Identities = 37/91 (40%), Positives = 56/91 (61%)
Frame = +3 / +1
Query: 75 ENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVIHYNGNLKPW 254
++ L + P L++F + +PLD GLGY+ ++ RR+A +HYNGN+KPW
Sbjct: 115 KDELSLRAAAFPLSLLSFQHLIYPLDEKLTLAGLGYDYGIDEVVARRSASLHYNGNMKPW 294
Query: 255 LEIGLPKYRKYWSAHVNYDQVFLRECNINP* 347
LE+G+P Y+KYW + F+ ECN+NP*
Sbjct: 295 LELGIPDYKKYWKRFLVRGDRFMDECNVNP* 387
Score = 26.3 bits (51), Expect(2) = 4e-022
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3 / +1
Query: 3 NMFDLGDWRKQNITEVY 53
N+ +L WR+ N+TE Y
Sbjct: 37 NLINLDKWREHNVTENY 87
>gb|BI212063.1|BI212063 IP1_61_B03.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 648
Score = 99.1 bits (210), Expect(2) = 4e-022
Identities = 37/91 (40%), Positives = 56/91 (61%)
Frame = +3 / +1
Query: 75 ENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVIHYNGNLKPW 254
++ L + P L++F + +PLD GLGY+ ++ RR+A +HYNGN+KPW
Sbjct: 214 KDELSLRAAAFPLSLLSFQHLIYPLDEKLTLAGLGYDYGIDEVVARRSASLHYNGNMKPW 393
Query: 255 LEIGLPKYRKYWSAHVNYDQVFLRECNINP* 347
LE+G+P Y+KYW + F+ ECN+NP*
Sbjct: 394 LELGIPDYKKYWKRFLVRGDRFMDECNVNP* 486
Score = 26.3 bits (51), Expect(2) = 4e-022
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +3 / +1
Query: 3 NMFDLGDWRKQNITEVY 53
N+ +L WR+ N+TE Y
Sbjct: 136 NLINLDKWREHNVTENY 186
>gb|CF769345.1|CF769345 DSBF1_1_C05.b1_A010 Drought-stressed before flowering Sorghum
bicolor cDNA clone DSBF1_1_C05_A010 5', mRNA sequence
Length = 580
Score = 104 bits (221), Expect = 2e-021
Identities = 36/75 (48%), Positives = 48/75 (64%)
Frame = +3 / +1
Query: 114 GLVTFWNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVIHYNGNLKPWLEIGLPKYRKYWS 293
GL+ F P+D SWH LGLGY ++ + +AAVIHYNG KPWLEIG + +W+
Sbjct: 4 GLIAFKGHVHPIDPSWHLLGLGYQEKTDISSVEQAAVIHYNGQSKPWLEIGFKHLQPFWT 183
Query: 294 AHVNYDQVFLRECNI 338
+VNY F+R C+I
Sbjct: 184 KYVNYSNEFIRNCHI 228
>gb|CF485968.1|CF485968 POL1_34_H03.g1_A002 Pollen Sorghum bicolor cDNA clone
POL1_34_H03_A002 5', mRNA sequence
Length = 620
Score = 101 bits (216), Expect = 7e-021
Identities = 37/92 (40%), Positives = 58/92 (63%)
Frame = +3 / +1
Query: 72 NENRLLWKLGTLPAGLVTFWNRTFPLDRSWHQLGLGYNPNVNVKDIRRAAVIHYNGNLKP 251
N++ + LP L++F + +PLD GLGY+ + + + +A +HYNGN+KP
Sbjct: 43 NDDEASLRASALPISLLSFQHLLYPLDERLTLSGLGYDYGIKEEVAQSSASLHYNGNMKP 222
Query: 252 WLEIGLPKYRKYWSAHVNYDQVFLRECNINP* 347
WLE+G+P YRKYW + D+ F+ ECN++P*
Sbjct: 223 WLELGIPDYRKYWKRFLTRDERFMDECNVSP* 318
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 737,679,861
Number of Sequences: 832831
Number of extensions: 10595286
Number of successful extensions: 79107
Number of sequences better than 1.0e-020: 31
length of database: 163,786,556
effective HSP length: 53
effective length of database: 119,646,513
effective search space used: 17229097872
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)