TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2594342.2.1
(715 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG053151.1|BG053151 RHIZ2_30_C08.g1_A003 Rhizome2 (RHIZ2... 209 2e-083
gb|BE361843.1|BE361843 DG1_82_D05.g1_A002 Dark Grown 1 (DG1... 208 4e-082
gb|BG101857.1|BG101857 RHIZ2_23_C08.g1_A003 Rhizome2 (RHIZ2... 209 2e-079
gb|BG052745.1|BG052745 RHIZ2_14_C01.g1_A003 Rhizome2 (RHIZ2... 188 3e-076
gb|BG649199.1|BG649199 EM1_78_A11.g1_A002 Embryo 1 (EM1) So... 171 3e-068
gb|AW283772.1|AW283772 LG1_255_D09.g1_A002 Light Grown 1 (L... 125 1e-055
gb|CW478520.1|CW478520 fsbb001f236h05f0 Sorghum methylation... 100 2e-046
gb|BI141406.1|BI141406 IP1_55_E09.g1_A002 Immature pannicle... 68 6e-036
gb|BG559588.1|BG559588 RHIZ2_69_E06.g1_A003 Rhizome2 (RHIZ2... 128 5e-031
>gb|BG053151.1|BG053151 RHIZ2_30_C08.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 584
Score = 209 bits (451), Expect(3) = 3e-077
Identities = 92/103 (89%), Positives = 95/103 (92%)
Frame = -2 / +3
Query: 714 KGALCEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGV 535
+GA CEGLAF+V LRVRNAG SG TVFLFSSPPAV NAPAK LLGFEKVSLEPGQAGV
Sbjct: 3 EGAHCEGLAFDVHLRVRNAGDMSGAHTVFLFSSPPAVHNAPAKHLLGFEKVSLEPGQAGV 182
Query: 534 VAFKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLGV* 406
VAFKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTL+LGV*
Sbjct: 183 VAFKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLSLGV* 311
Score = 164 bits (352), Expect(4) = 1e-065
Identities = 70/103 (67%), Positives = 71/103 (68%)
Frame = +2 / -2
Query: 404 HQTPKLSVCLRSPTCSVWXXXXXXXXXXXXXXXXXXXXXXXNATTPACPGSSDTFSKPSR 583
HQTPKLSVCLRSPTCSVW NATTPACPGSSDTFS PSR
Sbjct: 313 HQTPKLSVCLRSPTCSVWLPSATFLLPSSSTTLRSLHTSTLNATTPACPGSSDTFSNPSR 134
Query: 584 GFAGALGTAGGDENRNTVGPPDLLPAFRTRRGTLNARPSQSAP 712
FAGAL TAGGDENRNTV PD+ PAFRTRR T NARPSQ AP
Sbjct: 133 CFAGALCTAGGDENRNTVCAPDMSPAFRTRRCTSNARPSQCAP 5
Score = 130 bits (279), Expect(4) = 2e-060
Identities = 55/61 (90%), Positives = 57/61 (93%)
Frame = +1 / -1
Query: 406 SDSQVERVLEVPDVQRVAAQRHLPVAQLVHDAEVLAHVHLERHHARLPGLQRHLFEAQQG 585
S+SQ ERVLEVPDVQRVAA+RHLPVAQLVHDAEVLAHVHLERHHARLPGLQRHL E QQ
Sbjct: 311 SNSQAERVLEVPDVQRVAAERHLPVAQLVHDAEVLAHVHLERHHARLPGLQRHLLEPQQV 132
Query: 586 L 588
L
Sbjct: 131 L 129
Score = 111 bits (237), Expect(5) = 2e-083
Identities = 38/41 (92%), Positives = 39/41 (95%)
Frame = -3 / +1
Query: 578 WASKRCRWSPGRRAWWRSRWTCARTSASWTSWATGRWRWAA 456
W S+RCRWSPGRRAWWRSRWTCARTSASWTSWATGRWR AA
Sbjct: 139 WGSRRCRWSPGRRAWWRSRWTCARTSASWTSWATGRWRSAA 261
Score = 100 bits (213), Expect(5) = 2e-083
Identities = 41/45 (91%), Positives = 44/45 (97%)
Frame = -1 / +2
Query: 715 QGRALRGPGVQRAPPGAERGQKVRRAHGVPVLVAAGGAQRAGEAP 581
+GRALRGPGV+RAPPGAERG+ VRRAHGVPVLVAAGGAQRAGEAP
Sbjct: 2 RGRALRGPGVRRAPPGAERGRHVRRAHGVPVLVAAGGAQRAGEAP 136
Score = 68.4 bits (143), Expect(5) = 2e-083
Identities = 27/33 (81%), Positives = 28/33 (84%)
Frame = -2 / +1
Query: 342 WVGGSGKRRLSELVRQVSNKGFLLGKNWIHGQL 244
W+G GKR LSELVRQVSN GFLL KNWIHGQL
Sbjct: 373 WMGRPGKRGLSELVRQVSNNGFLLAKNWIHGQL 471
Score = 68.4 bits (143), Expect(4) = 1e-065
Identities = 26/31 (83%), Positives = 26/31 (83%)
Frame = +2 / -1
Query: 245 SCPWIQFFPNRKPLLDTCRTNSDNLLFPLPP 337
SCPWIQFF NRKPLLDTCRTNSD LFP P
Sbjct: 470 SCPWIQFFANRKPLLDTCRTNSDKPLFPGRP 378
Score = 67.5 bits (141), Expect(3) = 3e-077
Identities = 24/27 (88%), Positives = 25/27 (92%)
Frame = -3 / +2
Query: 326 GREGCQNWFGRCLIKASCWERIGSTGS 246
GRE CQNWFGRCLI ASCW+RIGSTGS
Sbjct: 389 GREVCQNWFGRCLITASCWQRIGSTGS 469
Score = 61.6 bits (128), Expect(4) = 2e-060
Identities = 26/33 (78%), Positives = 27/33 (81%)
Frame = +1 / -3
Query: 244 KLPVDPILSQQEAFIRHLPNQF*QPSLPTASDP 342
KLPVDPIL QQEA IRHLPNQF*Q SLP + P
Sbjct: 471 KLPVDPILCQQEAVIRHLPNQF*QTSLPRPTHP 373
Score = 58.8 bits (122), Expect(5) = 2e-083
Identities = 25/30 (83%), Positives = 26/30 (86%)
Frame = -2 / +2
Query: 243 LVICLEALDSLEGRFVIVITINVMDWKFGR 154
LVICLE LDSLE RFVIVI INV+DWKF R
Sbjct: 470 LVICLEVLDSLEVRFVIVILINVIDWKFRR 559
Score = 56.1 bits (116), Expect(3) = 4e-021
Identities = 25/27 (92%), Positives = 26/27 (96%)
Frame = -1 / +3
Query: 325 EEKVVRIGSAGV**RLPVGKELDPRAA 245
EE+ VRIGSAGV**RLPVGKELDPRAA
Sbjct: 390 EERFVRIGSAGV**RLPVGKELDPRAA 470
Score = 54.2 bits (112), Expect(4) = 1e-065
Identities = 24/32 (75%), Positives = 26/32 (81%)
Frame = +2 / -3
Query: 149 WPLPNFQSITLIVITITNRPSNESNASKQMTK 244
+ L NFQSIT I ITITNR SNESN SKQ+TK
Sbjct: 564 YSLRNFQSITFIRITITNRTSNESNTSKQITK 469
Score = 53.3 bits (110), Expect(4) = 2e-060
Identities = 22/30 (73%), Positives = 25/30 (83%)
Frame = +1 / -2
Query: 148 LAPSEFPIHYINRDYNHKSTLQ*IQCLQTN 237
+ PSEFPI YI +D+NHKS LQ*IQ LQTN
Sbjct: 565 ILPSEFPIDYIYQDHNHKSNLQ*IQHLQTN 476
Score = 52.4 bits (108), Expect(3) = 3e-077
Identities = 23/29 (79%), Positives = 24/29 (82%)
Frame = -3 / +3
Query: 236 FVWRHWIHWRVDL*L*SRLM*WIGNSEGA 150
FVWR WIHWR DL*L*S M* IGNSEG+
Sbjct: 477 FVWRCWIHWRFDL*L*S**M*SIGNSEGS 563
Score = 51.9 bits (107), Expect(3) = 4e-021
Identities = 20/24 (83%), Positives = 21/24 (87%)
Frame = -3 / +1
Query: 713 RARSARAWRSTCPSGCGTRAEGPA 642
RAR+ARAWRSTC SGCGTRA PA
Sbjct: 4 RARTARAWRSTCTSGCGTRATCPA 75
Score = 47.8 bits (98), Expect(5) = 2e-083
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = -1 / +2
Query: 457 PHAARRGPQAHAQLGSLMAERE 392
PHAARRGPQAHAQLGSLM + E
Sbjct: 260 PHAARRGPQAHAQLGSLMKKPE 325
Score = 45.5 bits (93), Expect(4) = 2e-060
Identities = 20/24 (83%), Positives = 20/24 (83%)
Frame = +1 / -1
Query: 643 AGPSARVPHPEGHVERQALAERAL 714
AG ARVPHPE HVERQALA RAL
Sbjct: 74 AGHVARVPHPEVHVERQALAVRAL 3
Score = 34.1 bits (68), Expect(3) = 4e-021
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = -1 / +1
Query: 205 SICDCNHD*CNGLEIRKG 152
SICDC+ D CN LEI KG
Sbjct: 508 SICDCDPDKCNRLEIPKG 561
Score = 22.1 bits (42), Expect(4) = 1e-065
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = +1 / -3
Query: 379 TW*PFPSR 402
+W*PFPSR
Sbjct: 354 SW*PFPSR 331
>gb|BE361843.1|BE361843 DG1_82_D05.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 657
Score = 208 bits (448), Expect(3) = 8e-077
Identities = 91/103 (88%), Positives = 95/103 (92%)
Frame = -2 / +3
Query: 714 KGALCEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGV 535
+GA CEGLAF+V LRVRNAG SG TVFLFSSPPAV NAPAK LLGFEKVSLEPGQAGV
Sbjct: 93 EGAHCEGLAFDVHLRVRNAGDMSGAHTVFLFSSPPAVHNAPAKHLLGFEKVSLEPGQAGV 272
Query: 534 VAFKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLGV* 406
VAFKVDVCKDLSVVDELGNRKVALG+HTLHVGDLKHTL+LGV*
Sbjct: 273 VAFKVDVCKDLSVVDELGNRKVALGNHTLHVGDLKHTLSLGV* 401
Score = 164 bits (352), Expect(4) = 1e-065
Identities = 70/103 (67%), Positives = 71/103 (68%)
Frame = +2 / -3
Query: 404 HQTPKLSVCLRSPTCSVWXXXXXXXXXXXXXXXXXXXXXXXNATTPACPGSSDTFSKPSR 583
HQTPKLSVCLRSPTCSVW NATTPACPGSSDTFS PSR
Sbjct: 403 HQTPKLSVCLRSPTCSVWLPSATFLLPSSSTTLRSLHTSTLNATTPACPGSSDTFSNPSR 224
Query: 584 GFAGALGTAGGDENRNTVGPPDLLPAFRTRRGTLNARPSQSAP 712
FAGAL TAGGDENRNTV PD+ PAFRTRR T NARPSQ AP
Sbjct: 223 CFAGALCTAGGDENRNTVCAPDMSPAFRTRRCTSNARPSQCAP 95
Score = 128 bits (275), Expect(4) = 1e-059
Identities = 54/61 (88%), Positives = 56/61 (91%)
Frame = +1 / -2
Query: 406 SDSQVERVLEVPDVQRVAAQRHLPVAQLVHDAEVLAHVHLERHHARLPGLQRHLFEAQQG 585
S+SQ ERVLEVPDVQRV A+RHLPVAQLVHDAEVLAHVHLERHHARLPGLQRHL E QQ
Sbjct: 401 SNSQAERVLEVPDVQRVVAERHLPVAQLVHDAEVLAHVHLERHHARLPGLQRHLLEPQQV 222
Query: 586 L 588
L
Sbjct: 221 L 219
Score = 109 bits (233), Expect(5) = 4e-082
Identities = 37/40 (92%), Positives = 38/40 (95%)
Frame = -3 / +1
Query: 578 WASKRCRWSPGRRAWWRSRWTCARTSASWTSWATGRWRWA 459
W S+RCRWSPGRRAWWRSRWTCARTSASWTSWATGRWR A
Sbjct: 229 WGSRRCRWSPGRRAWWRSRWTCARTSASWTSWATGRWRSA 348
Score = 100 bits (213), Expect(5) = 4e-082
Identities = 41/45 (91%), Positives = 44/45 (97%)
Frame = -1 / +2
Query: 715 QGRALRGPGVQRAPPGAERGQKVRRAHGVPVLVAAGGAQRAGEAP 581
+GRALRGPGV+RAPPGAERG+ VRRAHGVPVLVAAGGAQRAGEAP
Sbjct: 92 RGRALRGPGVRRAPPGAERGRHVRRAHGVPVLVAAGGAQRAGEAP 226
Score = 68.4 bits (143), Expect(5) = 4e-082
Identities = 27/33 (81%), Positives = 28/33 (84%)
Frame = -2 / +2
Query: 342 WVGGSGKRRLSELVRQVSNKGFLLGKNWIHGQL 244
W+G GKR LSELVRQVSN GFLL KNWIHGQL
Sbjct: 464 WMGRPGKRGLSELVRQVSNNGFLLAKNWIHGQL 562
Score = 68.4 bits (143), Expect(4) = 1e-065
Identities = 26/31 (83%), Positives = 26/31 (83%)
Frame = +2 / -1
Query: 245 SCPWIQFFPNRKPLLDTCRTNSDNLLFPLPP 337
SCPWIQFF NRKPLLDTCRTNSD LFP P
Sbjct: 561 SCPWIQFFANRKPLLDTCRTNSDKPLFPGRP 469
Score = 67.5 bits (141), Expect(3) = 8e-077
Identities = 24/27 (88%), Positives = 25/27 (92%)
Frame = -3 / +3
Query: 326 GREGCQNWFGRCLIKASCWERIGSTGS 246
GRE CQNWFGRCLI ASCW+RIGSTGS
Sbjct: 480 GREVCQNWFGRCLITASCWQRIGSTGS 560
Score = 61.6 bits (128), Expect(4) = 1e-059
Identities = 26/33 (78%), Positives = 27/33 (81%)
Frame = +1 / -3
Query: 244 KLPVDPILSQQEAFIRHLPNQF*QPSLPTASDP 342
KLPVDPIL QQEA IRHLPNQF*Q SLP + P
Sbjct: 562 KLPVDPILCQQEAVIRHLPNQF*QTSLPRPTHP 464
Score = 57.4 bits (119), Expect(5) = 4e-082
Identities = 24/30 (80%), Positives = 26/30 (86%)
Frame = -2 / +3
Query: 243 LVICLEALDSLEGRFVIVITINVMDWKFGR 154
L+ICLE LDSLE RFVIVI INV+DWKF R
Sbjct: 561 LLICLEVLDSLEVRFVIVILINVIDWKFRR 650
Score = 57.4 bits (119), Expect(3) = 2e-021
Identities = 25/28 (89%), Positives = 27/28 (96%)
Frame = -1 / +1
Query: 325 EEKVVRIGSAGV**RLPVGKELDPRAAF 242
EE+ VRIGSAGV**RLPVGKELDPRAA+
Sbjct: 481 EERFVRIGSAGV**RLPVGKELDPRAAY 564
Score = 53.8 bits (111), Expect(4) = 1e-065
Identities = 23/32 (71%), Positives = 26/32 (81%)
Frame = +1 / -2
Query: 148 LAPSEFPIHYINRDYNHKSTLQ*IQCLQTND* 243
+ PSEFPI YI +D+NHKS LQ*IQ LQTN *
Sbjct: 656 ILPSEFPIDYIYQDHNHKSNLQ*IQHLQTNQ* 561
Score = 52.4 bits (108), Expect(3) = 8e-077
Identities = 23/29 (79%), Positives = 24/29 (82%)
Frame = -3 / +1
Query: 236 FVWRHWIHWRVDL*L*SRLM*WIGNSEGA 150
FVWR WIHWR DL*L*S M* IGNSEG+
Sbjct: 568 FVWRCWIHWRFDL*L*S**M*SIGNSEGS 654
Score = 52.4 bits (108), Expect(4) = 1e-059
Identities = 23/32 (71%), Positives = 26/32 (81%)
Frame = +2 / -3
Query: 149 WPLPNFQSITLIVITITNRPSNESNASKQMTK 244
+ L NFQSIT I ITITNR SNESN SKQ++K
Sbjct: 655 YSLRNFQSITFIRITITNRTSNESNTSKQISK 560
Score = 51.9 bits (107), Expect(3) = 2e-021
Identities = 20/24 (83%), Positives = 21/24 (87%)
Frame = -3 / +1
Query: 713 RARSARAWRSTCPSGCGTRAEGPA 642
RAR+ARAWRSTC SGCGTRA PA
Sbjct: 94 RARTARAWRSTCTSGCGTRATCPA 165
Score = 46.4 bits (95), Expect(5) = 4e-082
Identities = 18/18 (100%), Positives = 18/18 (100%)
Frame = -1 / +2
Query: 457 PHAARRGPQAHAQLGSLM 404
PHAARRGPQAHAQLGSLM
Sbjct: 350 PHAARRGPQAHAQLGSLM 403
Score = 45.5 bits (93), Expect(4) = 1e-059
Identities = 20/24 (83%), Positives = 20/24 (83%)
Frame = +1 / -2
Query: 643 AGPSARVPHPEGHVERQALAERAL 714
AG ARVPHPE HVERQALA RAL
Sbjct: 164 AGHVARVPHPEVHVERQALAVRAL 93
Score = 34.1 bits (68), Expect(3) = 2e-021
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = -1 / +2
Query: 205 SICDCNHD*CNGLEIRKG 152
SICDC+ D CN LEI KG
Sbjct: 599 SICDCDPDKCNRLEIPKG 652
Score = 22.1 bits (42), Expect(4) = 1e-065
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = +1 / -3
Query: 379 TW*PFPSR 402
+W*PFPSR
Sbjct: 445 SW*PFPSR 422
>gb|BG101857.1|BG101857 RHIZ2_23_C08.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 607
Score = 209 bits (451), Expect(3) = 1e-070
Identities = 92/103 (89%), Positives = 95/103 (92%)
Frame = -2 / +2
Query: 714 KGALCEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGV 535
+GA CEGLAF+V LRVRNAG SG TVFLFSSPPAV NAPAK LLGFEKVSLEPGQAGV
Sbjct: 32 EGAHCEGLAFDVHLRVRNAGDMSGAHTVFLFSSPPAVHNAPAKHLLGFEKVSLEPGQAGV 211
Query: 534 VAFKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLGV* 406
VAFKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTL+LGV*
Sbjct: 212 VAFKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLSLGV* 340
Score = 164 bits (352), Expect(5) = 9e-061
Identities = 70/103 (67%), Positives = 71/103 (68%)
Frame = +2 / -2
Query: 404 HQTPKLSVCLRSPTCSVWXXXXXXXXXXXXXXXXXXXXXXXNATTPACPGSSDTFSKPSR 583
HQTPKLSVCLRSPTCSVW NATTPACPGSSDTFS PSR
Sbjct: 342 HQTPKLSVCLRSPTCSVWLPSATFLLPSSSTTLRSLHTSTLNATTPACPGSSDTFSNPSR 163
Query: 584 GFAGALGTAGGDENRNTVGPPDLLPAFRTRRGTLNARPSQSAP 712
FAGAL TAGGDENRNTV PD+ PAFRTRR T NARPSQ AP
Sbjct: 162 CFAGALCTAGGDENRNTVCAPDMSPAFRTRRCTSNARPSQCAP 34
Score = 130 bits (279), Expect(5) = 5e-056
Identities = 55/61 (90%), Positives = 57/61 (93%)
Frame = +1 / -1
Query: 406 SDSQVERVLEVPDVQRVAAQRHLPVAQLVHDAEVLAHVHLERHHARLPGLQRHLFEAQQG 585
S+SQ ERVLEVPDVQRVAA+RHLPVAQLVHDAEVLAHVHLERHHARLPGLQRHL E QQ
Sbjct: 340 SNSQAERVLEVPDVQRVAAERHLPVAQLVHDAEVLAHVHLERHHARLPGLQRHLLEPQQV 161
Query: 586 L 588
L
Sbjct: 160 L 158
Score = 111 bits (237), Expect(6) = 2e-079
Identities = 38/41 (92%), Positives = 39/41 (95%)
Frame = -3 / +3
Query: 578 WASKRCRWSPGRRAWWRSRWTCARTSASWTSWATGRWRWAA 456
W S+RCRWSPGRRAWWRSRWTCARTSASWTSWATGRWR AA
Sbjct: 168 WGSRRCRWSPGRRAWWRSRWTCARTSASWTSWATGRWRSAA 290
Score = 100 bits (213), Expect(6) = 2e-079
Identities = 41/45 (91%), Positives = 44/45 (97%)
Frame = -1 / +1
Query: 715 QGRALRGPGVQRAPPGAERGQKVRRAHGVPVLVAAGGAQRAGEAP 581
+GRALRGPGV+RAPPGAERG+ VRRAHGVPVLVAAGGAQRAGEAP
Sbjct: 31 RGRALRGPGVRRAPPGAERGRHVRRAHGVPVLVAAGGAQRAGEAP 165
Score = 58.8 bits (122), Expect(6) = 2e-079
Identities = 25/30 (83%), Positives = 26/30 (86%)
Frame = -2 / +3
Query: 243 LVICLEALDSLEGRFVIVITINVMDWKFGR 154
LVICLE LDSLE RFVIVI INV+DWKF R
Sbjct: 498 LVICLEVLDSLEVRFVIVILINVIDWKFRR 587
Score = 54.2 bits (112), Expect(5) = 5e-056
Identities = 24/32 (75%), Positives = 26/32 (81%)
Frame = +2 / -1
Query: 149 WPLPNFQSITLIVITITNRPSNESNASKQMTK 244
+ L NFQSIT I ITITNR SNESN SKQ+TK
Sbjct: 592 YSLRNFQSITFIRITITNRTSNESNTSKQITK 497
Score = 54.2 bits (112), Expect(5) = 9e-061
Identities = 23/30 (76%), Positives = 25/30 (83%)
Frame = +1 / -3
Query: 148 LAPSEFPIHYINRDYNHKSTLQ*IQCLQTN 237
L PSEFPI YI +D+NHKS LQ*IQ LQTN
Sbjct: 593 LLPSEFPIDYIYQDHNHKSNLQ*IQHLQTN 504
Score = 52.4 bits (108), Expect(3) = 1e-070
Identities = 23/29 (79%), Positives = 24/29 (82%)
Frame = -3 / +1
Query: 236 FVWRHWIHWRVDL*L*SRLM*WIGNSEGA 150
FVWR WIHWR DL*L*S M* IGNSEG+
Sbjct: 505 FVWRCWIHWRFDL*L*S**M*SIGNSEGS 591
Score = 47.8 bits (98), Expect(6) = 2e-079
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = -1 / +1
Query: 457 PHAARRGPQAHAQLGSLMAERE 392
PHAARRGPQAHAQLGSLM + E
Sbjct: 289 PHAARRGPQAHAQLGSLMKKPE 354
Score = 46.4 bits (95), Expect(6) = 2e-079
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = -3 / +1
Query: 326 GREGCQNWFGRCLIKASCWERI 261
GRE CQNWFGRCLI ASC + +
Sbjct: 418 GREVCQNWFGRCLITASCGKEL 483
Score = 45.5 bits (93), Expect(5) = 5e-056
Identities = 20/24 (83%), Positives = 20/24 (83%)
Frame = +1 / -1
Query: 643 AGPSARVPHPEGHVERQALAERAL 714
AG ARVPHPE HVERQALA RAL
Sbjct: 103 AGHVARVPHPEVHVERQALAVRAL 32
Score = 45.5 bits (93), Expect(3) = 1e-070
Identities = 20/35 (57%), Positives = 24/35 (68%)
Frame = -2 / +3
Query: 342 WVGGSGKRRLSELVRQVSNKGFLLGKNWIHGQLLV 238
W+G GKR LSELVRQVSN GFL + G L++
Sbjct: 402 WMGRPGKRGLSELVRQVSNNGFLWQRIGSTGSLVI 506
Score = 42.8 bits (87), Expect(5) = 9e-061
Identities = 17/22 (77%), Positives = 18/22 (81%)
Frame = +2 / -1
Query: 272 NRKPLLDTCRTNSDNLLFPLPP 337
+RKPLLDTCRTNSD LFP P
Sbjct: 472 HRKPLLDTCRTNSDKPLFPGRP 407
Score = 40.9 bits (83), Expect(5) = 5e-056
Identities = 17/23 (73%), Positives = 18/23 (78%)
Frame = +1 / -3
Query: 274 QEAFIRHLPNQF*QPSLPTASDP 342
QEA IRHLPNQF*Q SLP + P
Sbjct: 470 QEAVIRHLPNQF*QTSLPRPTHP 402
Score = 26.7 bits (52), Expect(5) = 9e-061
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2 / -2
Query: 245 SCPWIQFF 268
SCPWIQFF
Sbjct: 498 SCPWIQFF 475
Score = 25.8 bits (50), Expect(6) = 2e-079
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -2 / +2
Query: 273 LGKNWIHGQL 244
+ KNWIHGQL
Sbjct: 470 VAKNWIHGQL 499
Score = 22.6 bits (43), Expect(5) = 5e-056
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1 / -1
Query: 244 KLPVDPILSQQEAFI 288
KLPVDPIL ++ +
Sbjct: 499 KLPVDPILCHRKPLL 455
Score = 22.1 bits (42), Expect(5) = 9e-061
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = +1 / -3
Query: 379 TW*PFPSR 402
+W*PFPSR
Sbjct: 383 SW*PFPSR 360
>gb|BG052745.1|BG052745 RHIZ2_14_C01.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 565
Score = 188 bits (406), Expect(3) = 4e-071
Identities = 83/90 (92%), Positives = 84/90 (93%)
Frame = -2 / +2
Query: 675 LRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVVAFKVDVCKDLSV 496
LRVRNAG SG TVFLFSSPPAV NAPAK LLGFEKVSLEPGQAGVVAFKVDVCKDLSV
Sbjct: 2 LRVRNAGDMSGAHTVFLFSSPPAVHNAPAKHLLGFEKVSLEPGQAGVVAFKVDVCKDLSV 181
Query: 495 VDELGNRKVALGSHTLHVGDLKHTLNLGV* 406
VDELGNRKVALGSHTLHVGDLKHTL+LGV*
Sbjct: 182 VDELGNRKVALGSHTLHVGDLKHTLSLGV* 271
Score = 145 bits (311), Expect(4) = 4e-060
Identities = 61/91 (67%), Positives = 62/91 (68%)
Frame = +2 / -2
Query: 404 HQTPKLSVCLRSPTCSVWXXXXXXXXXXXXXXXXXXXXXXXNATTPACPGSSDTFSKPSR 583
HQTPKLSVCLRSPTCSVW NATTPACPGSSDTFS PSR
Sbjct: 273 HQTPKLSVCLRSPTCSVWLPSATFLLPSSSTTLRSLHTSTLNATTPACPGSSDTFSNPSR 94
Query: 584 GFAGALGTAGGDENRNTVGPPDLLPAFRTRR 676
FAGAL TAGGDENRNTV PD+ PAFRTRR
Sbjct: 93 CFAGALCTAGGDENRNTVCAPDMSPAFRTRR 1
Score = 130 bits (279), Expect(4) = 4e-054
Identities = 55/61 (90%), Positives = 57/61 (93%)
Frame = +1 / -1
Query: 406 SDSQVERVLEVPDVQRVAAQRHLPVAQLVHDAEVLAHVHLERHHARLPGLQRHLFEAQQG 585
S+SQ ERVLEVPDVQRVAA+RHLPVAQLVHDAEVLAHVHLERHHARLPGLQRHL E QQ
Sbjct: 271 SNSQAERVLEVPDVQRVAAERHLPVAQLVHDAEVLAHVHLERHHARLPGLQRHLLEPQQV 92
Query: 586 L 588
L
Sbjct: 91 L 89
Score = 111 bits (237), Expect(5) = 3e-076
Identities = 38/41 (92%), Positives = 39/41 (95%)
Frame = -3 / +3
Query: 578 WASKRCRWSPGRRAWWRSRWTCARTSASWTSWATGRWRWAA 456
W S+RCRWSPGRRAWWRSRWTCARTSASWTSWATGRWR AA
Sbjct: 99 WGSRRCRWSPGRRAWWRSRWTCARTSASWTSWATGRWRSAA 221
Score = 73.9 bits (155), Expect(5) = 3e-076
Identities = 30/32 (93%), Positives = 31/32 (96%)
Frame = -1 / +1
Query: 676 PPGAERGQKVRRAHGVPVLVAAGGAQRAGEAP 581
PPGAERG+ VRRAHGVPVLVAAGGAQRAGEAP
Sbjct: 1 PPGAERGRHVRRAHGVPVLVAAGGAQRAGEAP 96
Score = 68.4 bits (143), Expect(5) = 3e-076
Identities = 27/33 (81%), Positives = 28/33 (84%)
Frame = -2 / +3
Query: 342 WVGGSGKRRLSELVRQVSNKGFLLGKNWIHGQL 244
W+G GKR LSELVRQVSN GFLL KNWIHGQL
Sbjct: 333 WMGRPGKRGLSELVRQVSNNGFLLAKNWIHGQL 431
Score = 68.4 bits (143), Expect(4) = 4e-060
Identities = 26/31 (83%), Positives = 26/31 (83%)
Frame = +2 / -1
Query: 245 SCPWIQFFPNRKPLLDTCRTNSDNLLFPLPP 337
SCPWIQFF NRKPLLDTCRTNSD LFP P
Sbjct: 430 SCPWIQFFANRKPLLDTCRTNSDKPLFPGRP 338
Score = 67.5 bits (141), Expect(3) = 4e-071
Identities = 24/27 (88%), Positives = 25/27 (92%)
Frame = -3 / +1
Query: 326 GREGCQNWFGRCLIKASCWERIGSTGS 246
GRE CQNWFGRCLI ASCW+RIGSTGS
Sbjct: 349 GREVCQNWFGRCLITASCWQRIGSTGS 429
Score = 61.6 bits (128), Expect(4) = 4e-054
Identities = 26/33 (78%), Positives = 27/33 (81%)
Frame = +1 / -3
Query: 244 KLPVDPILSQQEAFIRHLPNQF*QPSLPTASDP 342
KLPVDPIL QQEA IRHLPNQF*Q SLP + P
Sbjct: 431 KLPVDPILCQQEAVIRHLPNQF*QTSLPRPTHP 333
Score = 60.6 bits (126), Expect(5) = 3e-076
Identities = 26/36 (72%), Positives = 28/36 (77%)
Frame = -2 / +1
Query: 243 LVICLEALDSLEGRFVIVITINVMDWKFGRGQISFS 136
LVICLE LDSLE RFVIVI INV+DWKF R + S
Sbjct: 430 LVICLEVLDSLEVRFVIVILINVIDWKFRREYVELS 537
Score = 54.2 bits (112), Expect(4) = 4e-060
Identities = 24/32 (75%), Positives = 26/32 (81%)
Frame = +2 / -3
Query: 149 WPLPNFQSITLIVITITNRPSNESNASKQMTK 244
+ L NFQSIT I ITITNR SNESN SKQ+TK
Sbjct: 524 YSLRNFQSITFIRITITNRTSNESNTSKQITK 429
Score = 53.3 bits (110), Expect(4) = 4e-054
Identities = 22/30 (73%), Positives = 25/30 (83%)
Frame = +1 / -2
Query: 148 LAPSEFPIHYINRDYNHKSTLQ*IQCLQTN 237
+ PSEFPI YI +D+NHKS LQ*IQ LQTN
Sbjct: 525 ILPSEFPIDYIYQDHNHKSNLQ*IQHLQTN 436
Score = 52.4 bits (108), Expect(3) = 4e-071
Identities = 23/29 (79%), Positives = 24/29 (82%)
Frame = -3 / +2
Query: 236 FVWRHWIHWRVDL*L*SRLM*WIGNSEGA 150
FVWR WIHWR DL*L*S M* IGNSEG+
Sbjct: 437 FVWRCWIHWRFDL*L*S**M*SIGNSEGS 523
Score = 47.8 bits (98), Expect(5) = 3e-076
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = -1 / +1
Query: 457 PHAARRGPQAHAQLGSLMAERE 392
PHAARRGPQAHAQLGSLM + E
Sbjct: 220 PHAARRGPQAHAQLGSLMKKPE 285
Score = 24.0 bits (46), Expect(4) = 4e-054
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +1 / -1
Query: 643 AGPSARVPHPE 675
AG ARVPHPE
Sbjct: 34 AGHVARVPHPE 2
Score = 22.1 bits (42), Expect(4) = 4e-060
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = +1 / -3
Query: 379 TW*PFPSR 402
+W*PFPSR
Sbjct: 314 SW*PFPSR 291
>gb|BG649199.1|BG649199 EM1_78_A11.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA
sequence
Length = 522
Score = 171 bits (368), Expect(3) = 9e-066
Identities = 74/80 (92%), Positives = 76/80 (95%)
Frame = -2 / +3
Query: 645 GGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVVAFKVDVCKDLSVVDELGNRKVA 466
G TVFLFSSPPAV NAPAK LLGFEKVSLEPGQAGVVAFKVDVCKDLSVVDELGNRKVA
Sbjct: 3 GAHTVFLFSSPPAVHNAPAKHLLGFEKVSLEPGQAGVVAFKVDVCKDLSVVDELGNRKVA 182
Query: 465 LGSHTLHVGDLKHTLNLGV* 406
LG+HTLHVGDLKHTL+LGV*
Sbjct: 183 LGNHTLHVGDLKHTLSLGV* 242
Score = 128 bits (275), Expect(4) = 5e-055
Identities = 54/61 (88%), Positives = 56/61 (91%)
Frame = +1 / -2
Query: 406 SDSQVERVLEVPDVQRVAAQRHLPVAQLVHDAEVLAHVHLERHHARLPGLQRHLFEAQQG 585
S+SQ ERVLEVPDVQRV A+RHLPVAQLVHDAEVLAHVHLERHHARLPGLQRHL E QQ
Sbjct: 242 SNSQAERVLEVPDVQRVVAERHLPVAQLVHDAEVLAHVHLERHHARLPGLQRHLLEPQQV 63
Query: 586 L 588
L
Sbjct: 62 L 60
Score = 125 bits (268), Expect(3) = 2e-050
Identities = 53/81 (65%), Positives = 53/81 (65%)
Frame = +2 / -3
Query: 404 HQTPKLSVCLRSPTCSVWXXXXXXXXXXXXXXXXXXXXXXXNATTPACPGSSDTFSKPSR 583
HQTPKLSVCLRSPTCSVW NATTPACPGSSDTFS PSR
Sbjct: 244 HQTPKLSVCLRSPTCSVWLPSATFLLPSSSTTLRSLHTSTLNATTPACPGSSDTFSNPSR 65
Query: 584 GFAGALGTAGGDENRNTVGPP 646
FAGAL TAGGDENRNTV P
Sbjct: 64 CFAGALCTAGGDENRNTVCAP 2
Score = 109 bits (233), Expect(5) = 3e-068
Identities = 37/40 (92%), Positives = 38/40 (95%)
Frame = -3 / +1
Query: 578 WASKRCRWSPGRRAWWRSRWTCARTSASWTSWATGRWRWA 459
W S+RCRWSPGRRAWWRSRWTCARTSASWTSWATGRWR A
Sbjct: 70 WGSRRCRWSPGRRAWWRSRWTCARTSASWTSWATGRWRSA 189
Score = 68.4 bits (143), Expect(5) = 3e-068
Identities = 27/33 (81%), Positives = 28/33 (84%)
Frame = -2 / +2
Query: 342 WVGGSGKRRLSELVRQVSNKGFLLGKNWIHGQL 244
W+G GKR LSELVRQVSN GFLL KNWIHGQL
Sbjct: 305 WMGRPGKRGLSELVRQVSNNGFLLAKNWIHGQL 403
Score = 68.4 bits (143), Expect(4) = 5e-055
Identities = 26/31 (83%), Positives = 26/31 (83%)
Frame = +2 / -1
Query: 245 SCPWIQFFPNRKPLLDTCRTNSDNLLFPLPP 337
SCPWIQFF NRKPLLDTCRTNSD LFP P
Sbjct: 402 SCPWIQFFANRKPLLDTCRTNSDKPLFPGRP 310
Score = 67.5 bits (141), Expect(3) = 9e-066
Identities = 24/27 (88%), Positives = 25/27 (92%)
Frame = -3 / +3
Query: 326 GREGCQNWFGRCLIKASCWERIGSTGS 246
GRE CQNWFGRCLI ASCW+RIGSTGS
Sbjct: 321 GREVCQNWFGRCLITASCWQRIGSTGS 401
Score = 61.6 bits (128), Expect(3) = 2e-050
Identities = 26/33 (78%), Positives = 27/33 (81%)
Frame = +1 / -3
Query: 244 KLPVDPILSQQEAFIRHLPNQF*QPSLPTASDP 342
KLPVDPIL QQEA IRHLPNQF*Q SLP + P
Sbjct: 403 KLPVDPILCQQEAVIRHLPNQF*QTSLPRPTHP 305
Score = 57.4 bits (119), Expect(5) = 3e-068
Identities = 24/30 (80%), Positives = 26/30 (86%)
Frame = -2 / +3
Query: 243 LVICLEALDSLEGRFVIVITINVMDWKFGR 154
L+ICLE LDSLE RFVIVI INV+DWKF R
Sbjct: 402 LLICLEVLDSLEVRFVIVILINVIDWKFRR 491
Score = 53.8 bits (111), Expect(5) = 3e-068
Identities = 22/22 (100%), Positives = 22/22 (100%)
Frame = -1 / +2
Query: 646 RRAHGVPVLVAAGGAQRAGEAP 581
RRAHGVPVLVAAGGAQRAGEAP
Sbjct: 2 RRAHGVPVLVAAGGAQRAGEAP 67
Score = 53.3 bits (110), Expect(4) = 5e-055
Identities = 23/30 (76%), Positives = 25/30 (83%)
Frame = +1 / -2
Query: 154 PSEFPIHYINRDYNHKSTLQ*IQCLQTND* 243
PSEFPI YI +D+NHKS LQ*IQ LQTN *
Sbjct: 491 PSEFPIDYIYQDHNHKSNLQ*IQHLQTNQ* 402
Score = 51.9 bits (107), Expect(3) = 9e-066
Identities = 23/28 (82%), Positives = 23/28 (82%)
Frame = -3 / +1
Query: 236 FVWRHWIHWRVDL*L*SRLM*WIGNSEG 153
FVWR WIHWR DL*L*S M* IGNSEG
Sbjct: 409 FVWRCWIHWRFDL*L*S**M*SIGNSEG 492
Score = 51.9 bits (107), Expect(3) = 2e-050
Identities = 23/30 (76%), Positives = 25/30 (83%)
Frame = +2 / -3
Query: 155 LPNFQSITLIVITITNRPSNESNASKQMTK 244
L NFQSIT I ITITNR SNESN SKQ++K
Sbjct: 490 LRNFQSITFIRITITNRTSNESNTSKQISK 401
Score = 46.4 bits (95), Expect(5) = 3e-068
Identities = 18/18 (100%), Positives = 18/18 (100%)
Frame = -1 / +2
Query: 457 PHAARRGPQAHAQLGSLM 404
PHAARRGPQAHAQLGSLM
Sbjct: 191 PHAARRGPQAHAQLGSLM 244
Score = 22.1 bits (42), Expect(4) = 5e-055
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = +1 / -3
Query: 379 TW*PFPSR 402
+W*PFPSR
Sbjct: 286 SW*PFPSR 263
>gb|AW283772.1|AW283772 LG1_255_D09.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA
sequence
Length = 481
Score = 125 bits (267), Expect(3) = 4e-052
Identities = 53/55 (96%), Positives = 55/55 (100%)
Frame = -2 / +2
Query: 570 EKVSLEPGQAGVVAFKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLGV* 406
EKVSLEPGQAGVVAFKVDVCKDLSVVDELGNRKVALG+HTLHVGDLKHTL+LGV*
Sbjct: 2 EKVSLEPGQAGVVAFKVDVCKDLSVVDELGNRKVALGNHTLHVGDLKHTLSLGV* 166
Score = 122 bits (260), Expect(4) = 4e-053
Identities = 50/54 (92%), Positives = 52/54 (96%)
Frame = +1 / -1
Query: 406 SDSQVERVLEVPDVQRVAAQRHLPVAQLVHDAEVLAHVHLERHHARLPGLQRHL 567
S+SQ ERVLEVPDVQRV A+RHLPVAQLVHDAEVLAHVHLERHHARLPGLQRHL
Sbjct: 166 SNSQAERVLEVPDVQRVVAERHLPVAQLVHDAEVLAHVHLERHHARLPGLQRHL 5
Score = 102 bits (218), Expect(4) = 1e-055
Identities = 35/37 (94%), Positives = 36/37 (97%)
Frame = -3 / +3
Query: 569 KRCRWSPGRRAWWRSRWTCARTSASWTSWATGRWRWA 459
+RCRWSPGRRAWWRSRWTCARTSASWTSWATGRWR A
Sbjct: 3 RRCRWSPGRRAWWRSRWTCARTSASWTSWATGRWRSA 113
Score = 82.2 bits (173), Expect(3) = 1e-037
Identities = 33/56 (58%), Positives = 33/56 (58%)
Frame = +2 / -2
Query: 404 HQTPKLSVCLRSPTCSVWXXXXXXXXXXXXXXXXXXXXXXXNATTPACPGSSDTFS 571
HQTPKLSVCLRSPTCSVW NATTPACPGSSDTFS
Sbjct: 168 HQTPKLSVCLRSPTCSVWLPSATFLLPSSSTTLRSLHTSTLNATTPACPGSSDTFS 1
Score = 68.4 bits (143), Expect(4) = 1e-055
Identities = 27/33 (81%), Positives = 28/33 (84%)
Frame = -2 / +1
Query: 342 WVGGSGKRRLSELVRQVSNKGFLLGKNWIHGQL 244
W+G GKR LSELVRQVSN GFLL KNWIHGQL
Sbjct: 229 WMGRPGKRGLSELVRQVSNNGFLLAKNWIHGQL 327
Score = 68.4 bits (143), Expect(4) = 4e-053
Identities = 26/31 (83%), Positives = 26/31 (83%)
Frame = +2 / -3
Query: 245 SCPWIQFFPNRKPLLDTCRTNSDNLLFPLPP 337
SCPWIQFF NRKPLLDTCRTNSD LFP P
Sbjct: 326 SCPWIQFFANRKPLLDTCRTNSDKPLFPGRP 234
Score = 67.5 bits (141), Expect(3) = 4e-052
Identities = 24/27 (88%), Positives = 25/27 (92%)
Frame = -3 / +2
Query: 326 GREGCQNWFGRCLIKASCWERIGSTGS 246
GRE CQNWFGRCLI ASCW+RIGSTGS
Sbjct: 245 GREVCQNWFGRCLITASCWQRIGSTGS 325
Score = 61.6 bits (128), Expect(3) = 1e-037
Identities = 26/33 (78%), Positives = 27/33 (81%)
Frame = +1 / -2
Query: 244 KLPVDPILSQQEAFIRHLPNQF*QPSLPTASDP 342
KLPVDPIL QQEA IRHLPNQF*Q SLP + P
Sbjct: 327 KLPVDPILCQQEAVIRHLPNQF*QTSLPRPTHP 229
Score = 57.4 bits (119), Expect(4) = 1e-055
Identities = 24/30 (80%), Positives = 26/30 (86%)
Frame = -2 / +2
Query: 243 LVICLEALDSLEGRFVIVITINVMDWKFGR 154
L+ICLE LDSLE RFVIVI INV+DWKF R
Sbjct: 326 LLICLEVLDSLEVRFVIVILINVIDWKFRR 415
Score = 53.8 bits (111), Expect(4) = 4e-053
Identities = 23/32 (71%), Positives = 26/32 (81%)
Frame = +1 / -1
Query: 148 LAPSEFPIHYINRDYNHKSTLQ*IQCLQTND* 243
+ PSEFPI YI +D+NHKS LQ*IQ LQTN *
Sbjct: 421 ILPSEFPIDYIYQDHNHKSNLQ*IQHLQTNQ* 326
Score = 52.4 bits (108), Expect(3) = 4e-052
Identities = 23/29 (79%), Positives = 24/29 (82%)
Frame = -3 / +3
Query: 236 FVWRHWIHWRVDL*L*SRLM*WIGNSEGA 150
FVWR WIHWR DL*L*S M* IGNSEG+
Sbjct: 333 FVWRCWIHWRFDL*L*S**M*SIGNSEGS 419
Score = 52.4 bits (108), Expect(3) = 1e-037
Identities = 23/32 (71%), Positives = 26/32 (81%)
Frame = +2 / -2
Query: 149 WPLPNFQSITLIVITITNRPSNESNASKQMTK 244
+ L NFQSIT I ITITNR SNESN SKQ++K
Sbjct: 420 YSLRNFQSITFIRITITNRTSNESNTSKQISK 325
Score = 46.4 bits (95), Expect(4) = 1e-055
Identities = 18/18 (100%), Positives = 18/18 (100%)
Frame = -1 / +1
Query: 457 PHAARRGPQAHAQLGSLM 404
PHAARRGPQAHAQLGSLM
Sbjct: 115 PHAARRGPQAHAQLGSLM 168
Score = 22.1 bits (42), Expect(4) = 4e-053
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = +1 / -2
Query: 379 TW*PFPSR 402
+W*PFPSR
Sbjct: 210 SW*PFPSR 187
>gb|CW478520.1|CW478520 fsbb001f236h05f0 Sorghum methylation filtered library (LibID: 104)
Sorghum bicolor genomic clone fsbb001f236h05, DNA
sequence
Length = 733
Score = 100 bits (212), Expect(3) = 2e-046
Identities = 42/44 (95%), Positives = 44/44 (100%)
Frame = -2 / +1
Query: 537 VVAFKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLGV* 406
VVAFKVDVCKDLSVVDELGNRKVALG+HTLHVGDLKHTL+LGV*
Sbjct: 1 VVAFKVDVCKDLSVVDELGNRKVALGNHTLHVGDLKHTLSLGV* 132
Score = 98.2 bits (208), Expect(4) = 4e-046
Identities = 40/44 (90%), Positives = 42/44 (95%)
Frame = +1 / -2
Query: 406 SDSQVERVLEVPDVQRVAAQRHLPVAQLVHDAEVLAHVHLERHH 537
S+SQ ERVLEVPDVQRV A+RHLPVAQLVHDAEVLAHVHLERHH
Sbjct: 132 SNSQAERVLEVPDVQRVVAERHLPVAQLVHDAEVLAHVHLERHH 1
Score = 73.9 bits (155), Expect(4) = 2e-045
Identities = 25/26 (96%), Positives = 25/26 (96%)
Frame = -3 / +2
Query: 536 WWRSRWTCARTSASWTSWATGRWRWA 459
WWRSRWTCARTSASWTSWATGRWR A
Sbjct: 2 WWRSRWTCARTSASWTSWATGRWRSA 79
Score = 68.4 bits (143), Expect(4) = 4e-046
Identities = 26/31 (83%), Positives = 26/31 (83%)
Frame = +2 / -1
Query: 245 SCPWIQFFPNRKPLLDTCRTNSDNLLFPLPP 337
SCPWIQFF NRKPLLDTCRTNSD LFP P
Sbjct: 292 SCPWIQFFANRKPLLDTCRTNSDKPLFPGRP 200
Score = 68.4 bits (143), Expect(3) = 2e-046
Identities = 27/33 (81%), Positives = 28/33 (84%)
Frame = -2 / +3
Query: 342 WVGGSGKRRLSELVRQVSNKGFLLGKNWIHGQL 244
W+G GKR LSELVRQVSN GFLL KNWIHGQL
Sbjct: 195 WMGRPGKRGLSELVRQVSNNGFLLAKNWIHGQL 293
Score = 67.5 bits (141), Expect(4) = 2e-045
Identities = 24/27 (88%), Positives = 25/27 (92%)
Frame = -3 / +1
Query: 326 GREGCQNWFGRCLIKASCWERIGSTGS 246
GRE CQNWFGRCLI ASCW+RIGSTGS
Sbjct: 211 GREVCQNWFGRCLITASCWQRIGSTGS 291
Score = 61.6 bits (128), Expect(3) = 1e-028
Identities = 26/33 (78%), Positives = 27/33 (81%)
Frame = +1 / -3
Query: 244 KLPVDPILSQQEAFIRHLPNQF*QPSLPTASDP 342
KLPVDPIL QQEA IRHLPNQF*Q SLP + P
Sbjct: 293 KLPVDPILCQQEAVIRHLPNQF*QTSLPRPTHP 195
Score = 57.4 bits (119), Expect(3) = 2e-046
Identities = 24/30 (80%), Positives = 26/30 (86%)
Frame = -2 / +1
Query: 243 LVICLEALDSLEGRFVIVITINVMDWKFGR 154
L+ICLE LDSLE RFVIVI INV+DWKF R
Sbjct: 292 LLICLEVLDSLEVRFVIVILINVIDWKFRR 381
Score = 53.8 bits (111), Expect(4) = 4e-046
Identities = 23/32 (71%), Positives = 26/32 (81%)
Frame = +1 / -2
Query: 148 LAPSEFPIHYINRDYNHKSTLQ*IQCLQTND* 243
+ PSEFPI YI +D+NHKS LQ*IQ LQTN *
Sbjct: 387 ILPSEFPIDYIYQDHNHKSNLQ*IQHLQTNQ* 292
Score = 52.4 bits (108), Expect(3) = 1e-028
Identities = 23/32 (71%), Positives = 26/32 (81%)
Frame = +2 / -3
Query: 149 WPLPNFQSITLIVITITNRPSNESNASKQMTK 244
+ L NFQSIT I ITITNR SNESN SKQ++K
Sbjct: 386 YSLRNFQSITFIRITITNRTSNESNTSKQISK 291
Score = 52.4 bits (108), Expect(4) = 2e-045
Identities = 23/29 (79%), Positives = 24/29 (82%)
Frame = -3 / +2
Query: 236 FVWRHWIHWRVDL*L*SRLM*WIGNSEGA 150
FVWR WIHWR DL*L*S M* IGNSEG+
Sbjct: 299 FVWRCWIHWRFDL*L*S**M*SIGNSEGS 385
Score = 51.5 bits (106), Expect(3) = 1e-028
Identities = 21/44 (47%), Positives = 21/44 (47%)
Frame = +2 / -3
Query: 404 HQTPKLSVCLRSPTCSVWXXXXXXXXXXXXXXXXXXXXXXXNAT 535
HQTPKLSVCLRSPTCSVW NAT
Sbjct: 134 HQTPKLSVCLRSPTCSVWLPSATFLLPSSSTTLRSLHTSTLNAT 3
Score = 46.4 bits (95), Expect(4) = 2e-045
Identities = 18/18 (100%), Positives = 18/18 (100%)
Frame = -1 / +3
Query: 457 PHAARRGPQAHAQLGSLM 404
PHAARRGPQAHAQLGSLM
Sbjct: 81 PHAARRGPQAHAQLGSLM 134
Score = 22.1 bits (42), Expect(4) = 4e-046
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = +1 / -3
Query: 379 TW*PFPSR 402
+W*PFPSR
Sbjct: 176 SW*PFPSR 153
>gb|BI141406.1|BI141406 IP1_55_E09.g1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA,
mRNA sequence
Length = 334
Score = 68.4 bits (143), Expect(4) = 6e-036
Identities = 27/33 (81%), Positives = 28/33 (84%)
Frame = -2 / +3
Query: 342 WVGGSGKRRLSELVRQVSNKGFLLGKNWIHGQL 244
W+G GKR LSELVRQVSN GFLL KNWIHGQL
Sbjct: 141 WMGRPGKRGLSELVRQVSNNGFLLAKNWIHGQL 239
Score = 68.4 bits (143), Expect(4) = 2e-033
Identities = 26/31 (83%), Positives = 26/31 (83%)
Frame = +2 / -1
Query: 245 SCPWIQFFPNRKPLLDTCRTNSDNLLFPLPP 337
SCPWIQFF NRKPLLDTCRTNSD LFP P
Sbjct: 238 SCPWIQFFANRKPLLDTCRTNSDKPLFPGRP 146
Score = 67.5 bits (141), Expect(5) = 9e-031
Identities = 24/27 (88%), Positives = 25/27 (92%)
Frame = -3 / +1
Query: 326 GREGCQNWFGRCLIKASCWERIGSTGS 246
GRE CQNWFGRCLI ASCW+RIGSTGS
Sbjct: 157 GREVCQNWFGRCLITASCWQRIGSTGS 237
Score = 61.6 bits (128), Expect(4) = 1e-029
Identities = 26/33 (78%), Positives = 27/33 (81%)
Frame = +1 / -3
Query: 244 KLPVDPILSQQEAFIRHLPNQF*QPSLPTASDP 342
KLPVDPIL QQEA IRHLPNQF*Q SLP + P
Sbjct: 239 KLPVDPILCQQEAVIRHLPNQF*QTSLPRPTHP 141
Score = 59.7 bits (124), Expect(4) = 6e-036
Identities = 24/26 (92%), Positives = 26/26 (100%)
Frame = -2 / +1
Query: 483 GNRKVALGSHTLHVGDLKHTLNLGV* 406
GNRKVALG+HTLHVGDLKHTL+LGV*
Sbjct: 1 GNRKVALGNHTLHVGDLKHTLSLGV* 78
Score = 57.4 bits (119), Expect(4) = 6e-036
Identities = 24/30 (80%), Positives = 26/30 (86%)
Frame = -2 / +1
Query: 243 LVICLEALDSLEGRFVIVITINVMDWKFGR 154
L+ICLE LDSLE RFVIVI INV+DWKF R
Sbjct: 238 LLICLEVLDSLEVRFVIVILINVIDWKFRR 327
Score = 53.8 bits (111), Expect(4) = 2e-033
Identities = 23/32 (71%), Positives = 26/32 (81%)
Frame = +1 / -2
Query: 148 LAPSEFPIHYINRDYNHKSTLQ*IQCLQTND* 243
+ PSEFPI YI +D+NHKS LQ*IQ LQTN *
Sbjct: 333 ILPSEFPIDYIYQDHNHKSNLQ*IQHLQTNQ* 238
Score = 53.3 bits (110), Expect(4) = 2e-033
Identities = 22/26 (84%), Positives = 24/26 (92%)
Frame = +1 / -2
Query: 406 SDSQVERVLEVPDVQRVAAQRHLPVA 483
S+SQ ERVLEVPDVQRV A+RHLPVA
Sbjct: 78 SNSQAERVLEVPDVQRVVAERHLPVA 1
Score = 52.4 bits (108), Expect(5) = 9e-031
Identities = 23/29 (79%), Positives = 24/29 (82%)
Frame = -3 / +2
Query: 236 FVWRHWIHWRVDL*L*SRLM*WIGNSEGA 150
FVWR WIHWR DL*L*S M* IGNSEG+
Sbjct: 245 FVWRCWIHWRFDL*L*S**M*SIGNSEGS 331
Score = 52.4 bits (108), Expect(4) = 1e-029
Identities = 23/32 (71%), Positives = 26/32 (81%)
Frame = +2 / -3
Query: 149 WPLPNFQSITLIVITITNRPSNESNASKQMTK 244
+ L NFQSIT I ITITNR SNESN SKQ++K
Sbjct: 332 YSLRNFQSITFIRITITNRTSNESNTSKQISK 237
Score = 49.2 bits (101), Expect(4) = 1e-029
Identities = 17/18 (94%), Positives = 18/18 (100%)
Frame = +2 / -3
Query: 404 HQTPKLSVCLRSPTCSVW 457
HQTPKLSVCLRSPTC+VW
Sbjct: 80 HQTPKLSVCLRSPTCNVW 27
Score = 44.6 bits (91), Expect(5) = 9e-031
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = -1 / +3
Query: 457 PHAARRGPQAHAQLGSLM 404
PH ARRGPQAHAQLGSLM
Sbjct: 27 PHVARRGPQAHAQLGSLM 80
Score = 22.1 bits (42), Expect(4) = 2e-033
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = +1 / -3
Query: 379 TW*PFPSR 402
+W*PFPSR
Sbjct: 122 SW*PFPSR 99
Score = 21.2 bits (40), Expect(4) = 1e-029
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +2 / -1
Query: 335 PTHPALQIPTAFTLVLGSHFPL 400
P P I +L GSHFPL
Sbjct: 166 PLFPGRPIQFQQSLHHGSHFPL 101
Score = 20.3 bits (38), Expect(4) = 6e-036
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -2 / +3
Query: 399 RGKWLP 382
RGKWLP
Sbjct: 102 RGKWLP 119
Score = 19.9 bits (37), Expect(5) = 9e-031
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -3 / +2
Query: 482 ATGRWRWA 459
ATGRWR A
Sbjct: 2 ATGRWRSA 25
Score = 18.9 bits (35), Expect(5) = 9e-031
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -3 / +1
Query: 401 REGNGY 384
REGNGY
Sbjct: 100 REGNGY 117
>gb|BG559588.1|BG559588 RHIZ2_69_E06.g1_A003 Rhizome2 (RHIZ2) Sorghum propinquum cDNA, mRNA
sequence
Length = 281
Score = 128 bits (275), Expect(2) = 8e-029
Identities = 54/55 (98%), Positives = 55/55 (100%)
Frame = -2 / +2
Query: 573 FEKVSLEPGQAGVVAFKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLGV 409
FEKVSLEPGQAGVVAFKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTL+LGV
Sbjct: 2 FEKVSLEPGQAGVVAFKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLSLGV 166
Score = 124 bits (265), Expect(2) = 9e-030
Identities = 51/55 (92%), Positives = 53/55 (96%)
Frame = +1 / -2
Query: 409 DSQVERVLEVPDVQRVAAQRHLPVAQLVHDAEVLAHVHLERHHARLPGLQRHLFE 573
+SQ ERVLEVPDVQRVAA+RHLPVAQLVHDAEVLAHVHLERHHARLPGLQRHL E
Sbjct: 166 NSQAERVLEVPDVQRVAAERHLPVAQLVHDAEVLAHVHLERHHARLPGLQRHLLE 2
Score = 106 bits (226), Expect(3) = 5e-031
Identities = 37/39 (94%), Positives = 38/39 (97%)
Frame = -3 / +3
Query: 572 SKRCRWSPGRRAWWRSRWTCARTSASWTSWATGRWRWAA 456
S+RCRWSPGRRAWWRSRWTCARTSASWTSWATGRWR AA
Sbjct: 3 SRRCRWSPGRRAWWRSRWTCARTSASWTSWATGRWRSAA 119
Score = 42.3 bits (86), Expect(3) = 5e-031
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = -1 / +1
Query: 457 PHAARRGPQAHAQLGS 410
PHAARRGPQAHAQLGS
Sbjct: 118 PHAARRGPQAHAQLGS 165
Score = 26.7 bits (52), Expect(2) = 9e-030
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +1 / -1
Query: 349 PPNSNCLHVGTW*PFPSR 402
P SN +W*PFPSR
Sbjct: 242 PTQSNSTEPPSW*PFPSR 189
Score = 23.5 bits (45), Expect(3) = 5e-031
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2 / +3
Query: 399 RGKWLPSTNVKAVGIWRAG 343
RGKWLP + +G+ R G
Sbjct: 192 RGKWLP*WRLC*IGLGRPG 248
Score = 18.9 bits (35), Expect(2) = 8e-029
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -3 / +1
Query: 401 REGNGY 384
REGNGY
Sbjct: 190 REGNGY 207
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 824,409,535
Number of Sequences: 832831
Number of extensions: 12887477
Number of successful extensions: 209435
Number of sequences better than 1.0e-020: 10
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 21742903806
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)