TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2542042.2.1
(691 letters)
Database: Sorghum_nucl_with_EST.fasta
832,831 sequences; 491,359,669 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CW165269.1|CW165269 104_573_11152417_116_36472_005 Sorgh... 112 3e-073
>gb|CW165269.1|CW165269 104_573_11152417_116_36472_005 Sorghum methylation filtered library
(LibID: 104) Sorghum bicolor genomic clone 11152417, DNA
sequence
Length = 571
Score = 112 bits (239), Expect(3) = 3e-073
Identities = 42/54 (77%), Positives = 46/54 (85%)
Frame = +2 / -3
Query: 302 GLGDGGVTTAIAMCHANTMNWDDRYFQMLNVTRGEEICHFMPRNYVLWLPAAEL 463
G + G TAIAMCHANT +WD RYF+MLN TRGEEICHFMPRNYVLWLPAA+L
Sbjct: 203 GHAEAGGATAIAMCHANTTSWDARYFEMLNATRGEEICHFMPRNYVLWLPAADL 42
Score = 108 bits (230), Expect(3) = 3e-073
Identities = 47/67 (70%), Positives = 54/67 (80%)
Frame = +2 / -3
Query: 14 EAESPEAHACATSEQAAADFAASSLGVRASKLVALVTTVHGGKDATRYVVAPNGITRIGK 193
E+ SP+ H CATSEQAA DFAA+SLGV AS+LVA+VT V G DA RYVVAP+G+ RIGK
Sbjct: 506 ESPSPDPHTCATSEQAATDFAAASLGVSASELVAVVTVVXGS*DAARYVVAPDGVARIGK 327
Query: 194 AAGAAAV 214
A AAAV
Sbjct: 326 AGAAAAV 306
Score = 101 bits (215), Expect(3) = 8e-051
Identities = 44/64 (68%), Positives = 48/64 (75%)
Frame = -1 / +3
Query: 205 GPCRLADACDAVGRHHVSSGVLPPMDGGDERDQLAGPDPERGGSEVGRRLLGGGAGMSLW 26
G RLADA DAV RHHV GVL P D D+ DQLAG DP+RGGSEVGRRLLGGGAG+ +
Sbjct: 315 GGSRLADARDAVWRHHVPGGVLAPXDDXDDGDQLAGTDPQRGGSEVGRRLLGGGAGVRVR 494
Query: 25 GLSL 14
G L
Sbjct: 495 GRGL 506
Score = 95.5 bits (202), Expect(3) = 3e-073
Identities = 35/41 (85%), Positives = 38/41 (92%)
Frame = +2 / -3
Query: 197 AGAAAVVPCHPMSYPYMVHYCHQPADVEALRIELTGLGDGG 319
AGAAA VPCHPM+YPYMVHYCH+PADVEALR+ELTGLG G
Sbjct: 326 AGAAAAVPCHPMAYPYMVHYCHRPADVEALRVELTGLGGDG 204
Score = 80.3 bits (169), Expect(3) = 8e-051
Identities = 33/46 (71%), Positives = 38/46 (82%)
Frame = -1 / +3
Query: 463 KLGSW*PEHIVARHEVADLLAARHVQHLEVAIVPVHGVGVAHGDRG 326
++GS P+H+V RHEVADLL AR VQHLEV+ VP GVGVAHGDRG
Sbjct: 42 QVGSRQPQHVVPRHEVADLLPARRVQHLEVSGVPARGVGVAHGDRG 179
Score = 76.7 bits (161), Expect(2) = 2e-027
Identities = 33/41 (80%), Positives = 35/41 (85%)
Frame = -2 / +1
Query: 459 SAAGSQST*LRGMKWQISSPRVTFSIWK*RSSQFMVLAWHM 337
SAAGS ST* RGMKWQISSPRV FSI K R+SQ +VLAWHM
Sbjct: 46 SAAGSHST*FRGMKWQISSPRVAFSISKYRASQLVVLAWHM 168
Score = 68.9 bits (144), Expect(2) = 2e-027
Identities = 31/42 (73%), Positives = 32/42 (76%)
Frame = -2 / +1
Query: 213 TAAAPAALPMRVMPLGATTYLVASFPPWTVVTSATSLLALTP 88
TAAA ALPMR P GATTYL AS PWT VT+ATS LALTP
Sbjct: 307 TAAAAPALPMRATPSGATTYLAAS*LPWTTVTTATSSLALTP 432
Score = 58.8 bits (122), Expect(3) = 8e-051
Identities = 21/24 (87%), Positives = 21/24 (87%)
Frame = -2 / +1
Query: 267 GWWQ*WTMYGYDIGWHGTTAAAPA 196
G WQ*WTMYGY IGWHGT AAAPA
Sbjct: 256 GRWQ*WTMYGYAIGWHGTAAAAPA 327
Database: Sorghum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:54 PM
Number of letters in database: 491,359,669
Number of sequences in database: 832,831
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 703,016,732
Number of Sequences: 832831
Number of extensions: 8711448
Number of successful extensions: 81942
Number of sequences better than 1.0e-020: 2
length of database: 163,786,556
effective HSP length: 54
effective length of database: 118,813,682
effective search space used: 20792394350
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)