TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAD4g02.sg.2.1
(308 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU821493.1|BU821493 UB23CPH06 Populus tremula cambium cD... 229 4e-060
gb|CV226133.1|CV226133 WS0163.B21_G06 PT-DX-A-7 Populus tri... 229 5e-060
gb|DT507619.1|DT507619 WS02418.BR_M05 PTxD-ICC-N-A-14 Popul... 229 5e-060
gb|DT517135.1|DT517135 WS02433.B21_G17 PTxD-ICC-N-A-14 Popu... 229 5e-060
gb|DT491082.1|DT491082 WS02546.C21.1_M06 PT-MB-N-A-15 Popul... 226 5e-059
gb|DT512247.1|DT512247 WS02418.B21_M05 PTxD-ICC-N-A-14 Popu... 221 2e-057
gb|CX655372.1|CX655372 PO02034A05 Poplar SC cDNA library Po... 196 1e-050
gb|DT505258.1|DT505258 WS01810.C21_H02 PTxD-IL-N-A-9 Populu... 193 2e-049
gb|DT508237.1|DT508237 WS02420.BR_G22 PTxD-ICC-N-A-14 Popul... 189 4e-048
gb|DT512853.1|DT512853 WS02420.B21_G22 PTxD-ICC-N-A-14 Popu... 189 4e-048
gb|CK096710.1|CK096710 UB23CPH06.3pR Populus active cambium... 186 3e-047
gb|CK106529.1|CK106529 UB23CPH06.5pR Populus active cambium... 89 5e-045
gb|DT517537.1|DT517537 WS02434.B21_J11 PTxD-ICC-N-A-14 Popu... 175 7e-044
gb|DT518289.1|DT518289 WS02436.B21_L17 PTxD-ICC-N-A-14 Popu... 114 9e-044
gb|DV463802.1|DV463802 MTUNUL1.P2.F01 NUL Populus fremontii... 164 1e-040
gb|CX181129.1|CX181129 C04_45-95_06.ab1 leaf inoculated wit... 163 3e-040
gb|DN502039.1|DN502039 V046C01.5pR Populus male catkins cDN... 162 7e-040
gb|DT492486.1|DT492486 WS02550.C21_N20 PT-MB-N-A-15 Populus... 158 9e-039
gb|DV465662.1|DV465662 MTUNUL1.P41.E01 NUL Populus fremonti... 133 2e-032
gb|DN492094.1|DN492094 V046C01.3pR Populus male catkins cDN... 133 5e-031
gb|BI126652.1|BI126652 I078P42P Populus leaf cDNA library P... 122 5e-028
gb|AJ769432.1|AJ769432 AJ769432 Populus euphratica leaf 3-6... 122 5e-028
gb|AJ780491.1|AJ780491 AJ780491 Populus euphratica leaf 3-6... 122 5e-028
gb|CX183717.1|CX183717 A07_45-28_01.ab1 leaf inoculated wit... 115 1e-025
gb|DN496017.1|DN496017 P029C05.5pR Populus petioles cDNA li... 110 3e-024
>gb|BU821493.1|BU821493 UB23CPH06 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 473
Score = 229 bits (495), Expect = 4e-060
Identities = 88/102 (86%), Positives = 94/102 (92%)
Frame = -2 / +2
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCG 128
PCTEEFPL A NPYGRTKL IE+ICRD++ SD +WKIILLRYFNP GAHPSGYIGEDP G
Sbjct: 65 PCTEEFPLSAANPYGRTKLYIEEICRDIYSSDSEWKIILLRYFNPAGAHPSGYIGEDPRG 244
Query: 127 VPNNLMPYVQQVAVGRLPHLTVYGTDYSTKDGTGVRDYIHVV 2
+PNNLMPYVQQVAVGR PHLTV+GTDYSTKDGTGVRDYIHVV
Sbjct: 245 IPNNLMPYVQQVAVGRRPHLTVFGTDYSTKDGTGVRDYIHVV 370
Score = 120 bits (257), Expect(2) = 4e-028
Identities = 55/79 (69%), Positives = 61/79 (77%)
Frame = +3 / -3
Query: 72 *GNLPTATCCT*GIRLFGTPQGSSPMYPLG*APTGLKYLSSMIFQSGSERWTSRQMSSIT 251
*G LPTATCCT*G+RLFG P+GSSP+ PLG AP GLKYLS+MIF S SE SRQ+SS+
Sbjct: 300 *GLLPTATCCT*GMRLFGIPRGSSPI*PLGCAPAGLKYLSNMIFHSESEL*ISRQISSM* 121
Query: 252 SFVRP*GLVAQSGNSSVHG 308
S V P G A GNSSVHG
Sbjct: 120 SLVLPYGFAADKGNSSVHG 64
Score = 20.8 bits (39), Expect(2) = 4e-028
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = +1 / -1
Query: 1 RQRGCNHAPQ 30
RQ CNH P+
Sbjct: 371 RQHECNHVPR 342
>gb|CV226133.1|CV226133 WS0163.B21_G06 PT-DX-A-7 Populus trichocarpa cDNA clone WS0163_G06
3', mRNA sequence
Length = 918
Score = 229 bits (494), Expect = 5e-060
Identities = 88/102 (86%), Positives = 94/102 (92%)
Frame = -2 / -2
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCG 128
PCTEEFPL A NPYGRTKL IE+ICRD++ SD +WKIILLRYFNPVGAHPSGYIGEDP G
Sbjct: 890 PCTEEFPLSAANPYGRTKLFIEEICRDIYSSDSEWKIILLRYFNPVGAHPSGYIGEDPRG 711
Query: 127 VPNNLMPYVQQVAVGRLPHLTVYGTDYSTKDGTGVRDYIHVV 2
+PNNLMPYVQQVAVGR PHLTV+GTDY TKDGTGVRDYIHVV
Sbjct: 710 IPNNLMPYVQQVAVGRRPHLTVFGTDYPTKDGTGVRDYIHVV 585
Score = 124 bits (265), Expect = 2e-028
Identities = 56/79 (70%), Positives = 62/79 (78%)
Frame = +3 / +1
Query: 72 *GNLPTATCCT*GIRLFGTPQGSSPMYPLG*APTGLKYLSSMIFQSGSERWTSRQMSSIT 251
*G LPTATCCT*G+RLFG P+GSSP+ PLG APTGLKYLS+MIF S SE SRQ+SS+
Sbjct: 655 *GLLPTATCCT*GMRLFGIPRGSSPI*PLGCAPTGLKYLSNMIFHSESEL*ISRQISSMK 834
Query: 252 SFVRP*GLVAQSGNSSVHG 308
S V P G A GNSSVHG
Sbjct: 835 SLVLPYGFAADKGNSSVHG 891
>gb|DT507619.1|DT507619 WS02418.BR_M05 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02418_M05 5', mRNA sequence
Length = 833
Score = 229 bits (494), Expect = 5e-060
Identities = 88/102 (86%), Positives = 94/102 (92%)
Frame = -2 / +2
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCG 128
PCTEEFPL A NPYGRTKL IE+ICRD++ SD +WKIILLRYFNPVGAHPSGYIGEDP G
Sbjct: 482 PCTEEFPLSAANPYGRTKLFIEEICRDIYSSDSEWKIILLRYFNPVGAHPSGYIGEDPRG 661
Query: 127 VPNNLMPYVQQVAVGRLPHLTVYGTDYSTKDGTGVRDYIHVV 2
+PNNLMPYVQQVAVGR PHLTV+GTDY TKDGTGVRDYIHVV
Sbjct: 662 IPNNLMPYVQQVAVGRRPHLTVFGTDYPTKDGTGVRDYIHVV 787
Score = 124 bits (265), Expect = 2e-028
Identities = 56/79 (70%), Positives = 62/79 (78%)
Frame = +3 / -3
Query: 72 *GNLPTATCCT*GIRLFGTPQGSSPMYPLG*APTGLKYLSSMIFQSGSERWTSRQMSSIT 251
*G LPTATCCT*G+RLFG P+GSSP+ PLG APTGLKYLS+MIF S SE SRQ+SS+
Sbjct: 717 *GLLPTATCCT*GMRLFGIPRGSSPI*PLGCAPTGLKYLSNMIFHSESEL*ISRQISSMK 538
Query: 252 SFVRP*GLVAQSGNSSVHG 308
S V P G A GNSSVHG
Sbjct: 537 SLVLPYGFAADKGNSSVHG 481
>gb|DT517135.1|DT517135 WS02433.B21_G17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02433_G17 3', mRNA sequence
Length = 881
Score = 229 bits (494), Expect = 5e-060
Identities = 88/102 (86%), Positives = 94/102 (92%)
Frame = -2 / -1
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCG 128
PCTEEFPL A NPYGRTKL IE+ICRD++ SD +WKIILLRYFNPVGAHPSGYIGEDP G
Sbjct: 878 PCTEEFPLSAANPYGRTKLFIEEICRDIYSSDSEWKIILLRYFNPVGAHPSGYIGEDPRG 699
Query: 127 VPNNLMPYVQQVAVGRLPHLTVYGTDYSTKDGTGVRDYIHVV 2
+PNNLMPYVQQVAVGR PHLTV+GTDY TKDGTGVRDYIHVV
Sbjct: 698 IPNNLMPYVQQVAVGRRPHLTVFGTDYPTKDGTGVRDYIHVV 573
Score = 124 bits (265), Expect = 2e-028
Identities = 56/79 (70%), Positives = 62/79 (78%)
Frame = +3 / +1
Query: 72 *GNLPTATCCT*GIRLFGTPQGSSPMYPLG*APTGLKYLSSMIFQSGSERWTSRQMSSIT 251
*G LPTATCCT*G+RLFG P+GSSP+ PLG APTGLKYLS+MIF S SE SRQ+SS+
Sbjct: 643 *GLLPTATCCT*GMRLFGIPRGSSPI*PLGCAPTGLKYLSNMIFHSESEL*ISRQISSMK 822
Query: 252 SFVRP*GLVAQSGNSSVHG 308
S V P G A GNSSVHG
Sbjct: 823 SLVLPYGFAADKGNSSVHG 879
>gb|DT491082.1|DT491082 WS02546.C21.1_M06 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02546_M06 3', mRNA sequence
Length = 922
Score = 226 bits (487), Expect = 5e-059
Identities = 87/101 (86%), Positives = 93/101 (92%)
Frame = -2 / -3
Query: 304 CTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCGV 125
CTEEFPL A NPYGRTKL IE+ICRD++ SD +WKIILLRYFNPVGAHPSGYIGEDP G+
Sbjct: 920 CTEEFPLSAANPYGRTKLFIEEICRDIYSSDSEWKIILLRYFNPVGAHPSGYIGEDPRGI 741
Query: 124 PNNLMPYVQQVAVGRLPHLTVYGTDYSTKDGTGVRDYIHVV 2
PNNLMPYVQQVAVGR PHLTV+GTDY TKDGTGVRDYIHVV
Sbjct: 740 PNNLMPYVQQVAVGRRPHLTVFGTDYPTKDGTGVRDYIHVV 618
Score = 121 bits (259), Expect = 1e-027
Identities = 55/78 (70%), Positives = 61/78 (78%)
Frame = +3 / +1
Query: 72 *GNLPTATCCT*GIRLFGTPQGSSPMYPLG*APTGLKYLSSMIFQSGSERWTSRQMSSIT 251
*G LPTATCCT*G+RLFG P+GSSP+ PLG APTGLKYLS+MIF S SE SRQ+SS+
Sbjct: 688 *GLLPTATCCT*GMRLFGIPRGSSPI*PLGCAPTGLKYLSNMIFHSESEL*ISRQISSMK 867
Query: 252 SFVRP*GLVAQSGNSSVH 305
S V P G A GNSSVH
Sbjct: 868 SLVLPYGFAADKGNSSVH 921
>gb|DT512247.1|DT512247 WS02418.B21_M05 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02418_M05 3', mRNA sequence
Length = 914
Score = 221 bits (476), Expect = 2e-057
Identities = 86/102 (84%), Positives = 92/102 (90%)
Frame = -2 / -1
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCG 128
PCTEE L A NPYGRTKL IE+ICRD++ SD +WKIILLRYFNPVGAHPSGYIGEDP G
Sbjct: 881 PCTEESLLSAANPYGRTKLFIEEICRDIYSSDSEWKIILLRYFNPVGAHPSGYIGEDPRG 702
Query: 127 VPNNLMPYVQQVAVGRLPHLTVYGTDYSTKDGTGVRDYIHVV 2
+PNNLMPYVQQVAVGR PHLTV+GTDY TKDGTGVRDYIHVV
Sbjct: 701 IPNNLMPYVQQVAVGRRPHLTVFGTDYPTKDGTGVRDYIHVV 576
Score = 118 bits (252), Expect = 1e-026
Identities = 54/79 (68%), Positives = 61/79 (77%)
Frame = +3 / +1
Query: 72 *GNLPTATCCT*GIRLFGTPQGSSPMYPLG*APTGLKYLSSMIFQSGSERWTSRQMSSIT 251
*G LPTATCCT*G+RLFG P+GSSP+ PLG APTGLKYLS+MIF S SE SRQ+SS+
Sbjct: 646 *GLLPTATCCT*GMRLFGIPRGSSPI*PLGCAPTGLKYLSNMIFHSESEL*ISRQISSMK 825
Query: 252 SFVRP*GLVAQSGNSSVHG 308
S V P G A +SSVHG
Sbjct: 826 SLVLPYGFAADKRDSSVHG 882
>gb|CX655372.1|CX655372 PO02034A05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02034A05 5', mRNA sequence
Length = 335
Score = 196 bits (423), Expect(2) = 1e-050
Identities = 76/95 (80%), Positives = 84/95 (88%)
Frame = -2 / +2
Query: 286 LCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCGVPNNLMP 107
L A +PYGRTKL IE IC D++RSD +WKIILL YFNPVGAHPSG+IGEDP G+PNNLMP
Sbjct: 26 LSAASPYGRTKLFIEGICCDIYRSDSEWKIILLTYFNPVGAHPSGHIGEDPRGIPNNLMP 205
Query: 106 YVQQVAVGRLPHLTVYGTDYSTKDGTGVRDYIHVV 2
YVQQ+AVGR PHLTVYGTDYS KDGTGV DYIHV+
Sbjct: 206 YVQQIAVGRRPHLTVYGTDYSPKDGTGVPDYIHVI 310
Score = 104 bits (222), Expect(2) = 1e-022
Identities = 47/70 (67%), Positives = 54/70 (77%)
Frame = +3 / -3
Query: 72 *GNLPTATCCT*GIRLFGTPQGSSPMYPLG*APTGLKYLSSMIFQSGSERWTSRQMSSIT 251
*G LPTA CCT*G+RLFG P+GSSP+ PLG APTGLKY+S MIF S SER S+Q+ S+
Sbjct: 240 *GRLPTAICCT*GMRLFGIPRGSSPI*PLGCAPTGLKYVSKMIFHSESER*ISQQIPSMK 61
Query: 252 SFVRP*GLVA 281
S V P GL A
Sbjct: 60 SLVLPYGLAA 31
Score = 19.9 bits (37), Expect(2) = 1e-050
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -2 / +3
Query: 307 PCTEEF 290
PCTEEF
Sbjct: 6 PCTEEF 23
Score = 17.6 bits (32), Expect(2) = 1e-022
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +3 / -2
Query: 291 NSSVHG 308
NSSVHG
Sbjct: 22 NSSVHG 5
>gb|DT505258.1|DT505258 WS01810.C21_H02 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS01810_H02 3', mRNA sequence
Length = 935
Score = 193 bits (417), Expect = 2e-049
Identities = 73/102 (71%), Positives = 86/102 (84%)
Frame = -2 / -3
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCG 128
PC E+F L A NPYGRTKL +E+I RD+ +++P+W IILLRYFNPVGAH SG +GEDP G
Sbjct: 900 PCVEDFNLKAMNPYGRTKLFLEEIARDIQKAEPEWSIILLRYFNPVGAHESGKLGEDPKG 721
Query: 127 VPNNLMPYVQQVAVGRLPHLTVYGTDYSTKDGTGVRDYIHVV 2
+PNNLMPY+QQVAVGRLP L VYG DY TKDG+ VRDYIHV+
Sbjct: 720 IPNNLMPYIQQVAVGRLPELNVYGHDYPTKDGSAVRDYIHVM 595
Score = 106 bits (226), Expect = 5e-023
Identities = 50/78 (64%), Positives = 54/78 (69%)
Frame = +3 / +2
Query: 75 GNLPTATCCT*GIRLFGTPQGSSPMYPLG*APTGLKYLSSMIFQSGSERWTSRQMSSITS 254
G+LPTATCC *G+RLFG P GSSP PL *APTGLKYLS MI SGS SR +SS S
Sbjct: 668 GSLPTATCCM*GMRLFGIPLGSSPSLPLS*APTGLKYLSKMILHSGSAF*ISRAISSRKS 847
Query: 255 FVRP*GLVAQSGNSSVHG 308
VRP*G +A SS G
Sbjct: 848 LVRP*GFIAFRLKSSTQG 901
>gb|DT508237.1|DT508237 WS02420.BR_G22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02420_G22 5', mRNA sequence
Length = 882
Score = 189 bits (408), Expect = 4e-048
Identities = 74/87 (85%), Positives = 80/87 (91%)
Frame = -2 / +1
Query: 262 RTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCGVPNNLMPYVQQVAVG 83
RTKL IE+ICRD++ SD +WKIILLRYFNPVGAHPSG IGEDP G+PNNLMPYVQQVAVG
Sbjct: 166 RTKLFIEEICRDIYSSDSEWKIILLRYFNPVGAHPSGCIGEDPRGIPNNLMPYVQQVAVG 345
Query: 82 RLPHLTVYGTDYSTKDGTGVRDYIHVV 2
R PHLTV+GTDY TKDGTGVRDYIHVV
Sbjct: 346 RRPHLTVFGTDYPTKDGTGVRDYIHVV 426
Score = 103 bits (219), Expect = 4e-022
Identities = 46/63 (73%), Positives = 52/63 (82%)
Frame = +3 / -2
Query: 72 *GNLPTATCCT*GIRLFGTPQGSSPMYPLG*APTGLKYLSSMIFQSGSERWTSRQMSSIT 251
*G LPTATCCT*G+RLFG P+GSSP+ PLG APTGLKYLS+MIF S SE SRQ+SS+
Sbjct: 356 *GLLPTATCCT*GMRLFGIPRGSSPIQPLGCAPTGLKYLSNMIFHSESEL*ISRQISSMK 177
Query: 252 SFV 260
S V
Sbjct: 176 SLV 168
>gb|DT512853.1|DT512853 WS02420.B21_G22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02420_G22 3', mRNA sequence
Length = 922
Score = 189 bits (408), Expect = 4e-048
Identities = 74/87 (85%), Positives = 80/87 (91%)
Frame = -2 / -3
Query: 262 RTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCGVPNNLMPYVQQVAVG 83
RTKL IE+ICRD++ SD +WKIILLRYFNPVGAHPSG IGEDP G+PNNLMPYVQQVAVG
Sbjct: 806 RTKLFIEEICRDIYSSDSEWKIILLRYFNPVGAHPSGCIGEDPRGIPNNLMPYVQQVAVG 627
Query: 82 RLPHLTVYGTDYSTKDGTGVRDYIHVV 2
R PHLTV+GTDY TKDGTGVRDYIHVV
Sbjct: 626 RRPHLTVFGTDYPTKDGTGVRDYIHVV 546
Score = 103 bits (219), Expect = 4e-022
Identities = 46/63 (73%), Positives = 52/63 (82%)
Frame = +3 / +1
Query: 72 *GNLPTATCCT*GIRLFGTPQGSSPMYPLG*APTGLKYLSSMIFQSGSERWTSRQMSSIT 251
*G LPTATCCT*G+RLFG P+GSSP+ PLG APTGLKYLS+MIF S SE SRQ+SS+
Sbjct: 616 *GLLPTATCCT*GMRLFGIPRGSSPIQPLGCAPTGLKYLSNMIFHSESEL*ISRQISSMK 795
Query: 252 SFV 260
S V
Sbjct: 796 SLV 804
>gb|CK096710.1|CK096710 UB23CPH06.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB23CPH06 3', mRNA sequence
Length = 875
Score = 186 bits (401), Expect = 3e-047
Identities = 71/94 (75%), Positives = 81/94 (86%)
Frame = -2 / -3
Query: 283 CATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCGVPNNLMPY 104
C + + + + E+ICRD++ SD +WKIILLRYFNP GAHPSGYIGEDP G+PNNLMPY
Sbjct: 843 CLLQTHMKNQALHEEICRDIYSSDSEWKIILLRYFNPAGAHPSGYIGEDPRGIPNNLMPY 664
Query: 103 VQQVAVGRLPHLTVYGTDYSTKDGTGVRDYIHVV 2
VQQVAVGR PHLTV+GTDYSTKDGTGVRDYIHVV
Sbjct: 663 VQQVAVGRRPHLTVFGTDYSTKDGTGVRDYIHVV 562
>gb|CK106529.1|CK106529 UB23CPH06.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB23CPH06 5', mRNA sequence
Length = 464
Score = 89.0 bits (188), Expect(4) = 5e-045
Identities = 34/38 (89%), Positives = 36/38 (94%)
Frame = -2 / +1
Query: 202 KIILLRYFNPVGAHPSGYIGEDPCGVPNNLMPYVQQVA 89
+IILLRYFNP GAHPSGYIGEDP G+PNNLMPYVQQVA
Sbjct: 163 EIILLRYFNPAGAHPSGYIGEDPRGIPNNLMPYVQQVA 276
Score = 64.8 bits (135), Expect(4) = 5e-045
Identities = 23/29 (79%), Positives = 26/29 (89%)
Frame = -2 / +1
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVH 221
PCTEEFPL A NPYGRTKL IE+ICRD++
Sbjct: 61 PCTEEFPLSAANPYGRTKLYIEEICRDIY 147
Score = 51.9 bits (107), Expect(4) = 5e-045
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = -2 / +1
Query: 64 VYGTDYSTKDGTGVRDYIHVV 2
++GTDYSTKDGTGVRDYIHVV
Sbjct: 304 LFGTDYSTKDGTGVRDYIHVV 366
Score = 24.4 bits (47), Expect(4) = 5e-045
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -2 / +2
Query: 109 PYVQQVAVGRLPHLTVY 59
P ++ VGR PHLT Y
Sbjct: 257 PMCSKLRVGRRPHLTGY 307
>gb|DT517537.1|DT517537 WS02434.B21_J11 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02434_J11 3', mRNA sequence
Length = 794
Score = 175 bits (377), Expect = 7e-044
Identities = 67/79 (84%), Positives = 73/79 (92%)
Frame = -2 / -1
Query: 238 ICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCGVPNNLMPYVQQVAVGRLPHLTVY 59
+CRD++ SD +WKIILLRYFNPVGAHPSG IGEDP G+PNNLMPYVQQVAVGR PHLTV+
Sbjct: 794 LCRDIYSSDSEWKIILLRYFNPVGAHPSGCIGEDPRGIPNNLMPYVQQVAVGRRPHLTVF 615
Query: 58 GTDYSTKDGTGVRDYIHVV 2
GTDY TKDGTGVRDYIHVV
Sbjct: 614 GTDYPTKDGTGVRDYIHVV 558
>gb|DT518289.1|DT518289 WS02436.B21_L17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02436_L17 3', mRNA sequence
Length = 925
Score = 114 bits (243), Expect(2) = 9e-044
Identities = 44/57 (77%), Positives = 49/57 (85%)
Frame = -2 / -2
Query: 172 VGAHPSGYIGEDPCGVPNNLMPYVQQVAVGRLPHLTVYGTDYSTKDGTGVRDYIHVV 2
VGAH SG +GEDP G+PNNLMPY+QQVAVGRLP L VYG DY TKDG+ VRDYIHV+
Sbjct: 753 VGAHESGKLGEDPRGIPNNLMPYIQQVAVGRLPELNVYGHDYPTKDGSAVRDYIHVM 583
Score = 81.3 bits (171), Expect(2) = 9e-044
Identities = 29/48 (60%), Positives = 38/48 (79%)
Frame = -2 / -1
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGA 164
PC E+F L A NPYGRTKL +E+I RD+ +++P+W IILLRYFN G+
Sbjct: 889 PCVEDFNLMAMNPYGRTKLFLEEIARDIQKAEPEWSIILLRYFNXRGS 746
>gb|DV463802.1|DV463802 MTUNUL1.P2.F01 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 593
Score = 164 bits (353), Expect = 1e-040
Identities = 63/74 (85%), Positives = 67/74 (90%)
Frame = -2 / +2
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCG 128
PCTEEFPL A NPYGRTKL IE+ICRD++ SD WKIILLRYFNPVGAHPSGYIGEDP G
Sbjct: 371 PCTEEFPLSAANPYGRTKLFIEEICRDIYTSDSKWKIILLRYFNPVGAHPSGYIGEDPRG 550
Query: 127 VPNNLMPYVQQVAV 86
+PNNLMPYVQQVAV
Sbjct: 551 IPNNLMPYVQQVAV 592
Score = 114 bits (244), Expect = 2e-025
Identities = 51/74 (68%), Positives = 58/74 (78%)
Frame = +3 / -3
Query: 87 TATCCT*GIRLFGTPQGSSPMYPLG*APTGLKYLSSMIFQSGSERWTSRQMSSITSFVRP 266
TATCCT*G+RLFG P+GSSP+ PLG APTGLKYLS+MIF SE SRQ+SS+ S V P
Sbjct: 591 TATCCT*GMRLFGIPRGSSPI*PLGCAPTGLKYLSNMIFHLESEV*ISRQISSMKSLVLP 412
Query: 267 *GLVAQSGNSSVHG 308
G A +GNSSVHG
Sbjct: 411 YGFAADNGNSSVHG 370
>gb|CX181129.1|CX181129 C04_45-95_06.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 738
Score = 163 bits (351), Expect = 3e-040
Identities = 61/87 (70%), Positives = 72/87 (82%)
Frame = -2 / +3
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCG 128
PC E+F L A NPYGRTKL +E+I RD+ +++P+W IILLRYFNPVGAH SG +GEDP G
Sbjct: 477 PCVEDFNLMAMNPYGRTKLFLEEIARDIQKAEPEWSIILLRYFNPVGAHESGKLGEDPKG 656
Query: 127 VPNNLMPYVQQVAVGRLPHLTVYGTDY 47
+PNNLMPY+QQVAVGRLP VYG DY
Sbjct: 657 IPNNLMPYIQQVAVGRLPEAYVYGHDY 737
Score = 103 bits (220), Expect = 3e-022
Identities = 49/78 (62%), Positives = 53/78 (67%)
Frame = +3 / -3
Query: 75 GNLPTATCCT*GIRLFGTPQGSSPMYPLG*APTGLKYLSSMIFQSGSERWTSRQMSSITS 254
G+ PTATCC *G+RLFG P GSSP PL *APTGLKYLS MI SGS SR +SS S
Sbjct: 709 GSRPTATCCM*GMRLFGIPLGSSPSLPLS*APTGLKYLSKMILHSGSAF*ISRAISSRKS 530
Query: 255 FVRP*GLVAQSGNSSVHG 308
VRP*G +A SS G
Sbjct: 529 LVRP*GFIAIRLKSSTQG 476
>gb|DN502039.1|DN502039 V046C01.5pR Populus male catkins cDNA library Populus trichocarpa
cDNA clone V046C01 5', mRNA sequence
Length = 797
Score = 162 bits (348), Expect = 7e-040
Identities = 60/85 (70%), Positives = 72/85 (84%)
Frame = -2 / +3
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCG 128
PC E+F L A NPYGRTKL +E+I RD+ +++P+W IILLRYFNPVGAH SG +GEDP G
Sbjct: 540 PCVEDFNLMAMNPYGRTKLFLEEIARDIQKAEPEWSIILLRYFNPVGAHESGKLGEDPRG 719
Query: 127 VPNNLMPYVQQVAVGRLPHLTVYGT 53
+PNNLMPY+QQVAVGRLP L VYG+
Sbjct: 720 IPNNLMPYIQQVAVGRLPELNVYGS 794
Score = 106 bits (226), Expect = 5e-023
Identities = 50/78 (64%), Positives = 54/78 (69%)
Frame = +3 / -2
Query: 75 GNLPTATCCT*GIRLFGTPQGSSPMYPLG*APTGLKYLSSMIFQSGSERWTSRQMSSITS 254
G+LPTATCC *G+RLFG P GSSP PL *APTGLKYLS MI SGS SR +SS S
Sbjct: 772 GSLPTATCCM*GMRLFGIPLGSSPSLPLS*APTGLKYLSKMILHSGSAF*ISRAISSRKS 593
Query: 255 FVRP*GLVAQSGNSSVHG 308
VRP*G +A SS G
Sbjct: 592 LVRP*GFIAIRLKSSTQG 539
>gb|DT492486.1|DT492486 WS02550.C21_N20 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02550_N20 3', mRNA sequence
Length = 807
Score = 158 bits (340), Expect = 9e-039
Identities = 59/81 (72%), Positives = 70/81 (86%)
Frame = -2 / -1
Query: 244 EDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCGVPNNLMPYVQQVAVGRLPHLT 65
E+I RD+ +++P+W IILLRYFNPVGAH SG +GEDP G+PNNLMPY+QQVAVGRLP L
Sbjct: 807 EEIARDIQKAEPEWSIILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRLPELN 628
Query: 64 VYGTDYSTKDGTGVRDYIHVV 2
VYG DY TKDG+ VRDYIHV+
Sbjct: 627 VYGHDYPTKDGSAVRDYIHVM 565
>gb|DV465662.1|DV465662 MTUNUL1.P41.E01 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 853
Score = 133 bits (285), Expect(2) = 2e-032
Identities = 50/61 (81%), Positives = 54/61 (88%)
Frame = -2 / +2
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCG 128
PCTEEFPL A NPYGRTKL IE+ICRD++ SD WKIILLRYFNPVGAHPSGYIGEDP G
Sbjct: 635 PCTEEFPLSAANPYGRTKLFIEEICRDIYTSDSKWKIILLRYFNPVGAHPSGYIGEDPRG 814
Query: 127 V 125
+
Sbjct: 815 I 817
Score = 24.0 bits (46), Expect(2) = 2e-032
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -2 / +1
Query: 118 NLMPYVQQVA 89
+LMPYVQQVA
Sbjct: 823 HLMPYVQQVA 852
>gb|DN492094.1|DN492094 V046C01.3pR Populus male catkins cDNA library Populus trichocarpa
cDNA clone V046C01 3', mRNA sequence
Length = 753
Score = 133 bits (284), Expect = 5e-031
Identities = 51/67 (76%), Positives = 57/67 (85%)
Frame = -2 / -2
Query: 202 KIILLRYFNPVGAHPSGYIGEDPCGVPNNLMPYVQQVAVGRLPHLTVYGTDYSTKDGTGV 23
+IIL RYFNPVGAH SG +GEDP G+PNN MPY+QQVAVGRLP L VYG DY TKDG+ V
Sbjct: 746 RIILFRYFNPVGAHESGKLGEDPKGIPNNFMPYIQQVAVGRLPELNVYGHDYPTKDGSAV 567
Query: 22 RDYIHVV 2
RDYIHV+
Sbjct: 566 RDYIHVM 546
>gb|BI126652.1|BI126652 I078P42P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 527
Score = 122 bits (262), Expect = 5e-028
Identities = 48/52 (92%), Positives = 50/52 (96%)
Frame = -2 / +3
Query: 157 SGYIGEDPCGVPNNLMPYVQQVAVGRLPHLTVYGTDYSTKDGTGVRDYIHVV 2
SGYIGEDP G+PNNLMPYVQQVAVGR PHLTV+GTDYSTKDGTGVRDYIHVV
Sbjct: 9 SGYIGEDPRGIPNNLMPYVQQVAVGRRPHLTVFGTDYSTKDGTGVRDYIHVV 164
>gb|AJ769432.1|AJ769432 AJ769432 Populus euphratica leaf 3-6 months Populus euphratica cDNA
clone P0001000001D04F1, mRNA sequence
Length = 272
Score = 122 bits (262), Expect = 5e-028
Identities = 47/60 (78%), Positives = 52/60 (86%)
Frame = -2 / +3
Query: 181 FNPVGAHPSGYIGEDPCGVPNNLMPYVQQVAVGRLPHLTVYGTDYSTKDGTGVRDYIHVV 2
FNPVGAH SG +GEDP G+PNNLMPY+QQVAVGRLP L VYG DY TKDG+ VRDYIHV+
Sbjct: 3 FNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRLPELNVYGHDYPTKDGSAVRDYIHVM 182
>gb|AJ780491.1|AJ780491 AJ780491 Populus euphratica leaf 3-6 months Populus euphratica cDNA
clone P0000900008H01F1, mRNA sequence
Length = 252
Score = 122 bits (262), Expect = 5e-028
Identities = 47/60 (78%), Positives = 52/60 (86%)
Frame = -2 / -3
Query: 181 FNPVGAHPSGYIGEDPCGVPNNLMPYVQQVAVGRLPHLTVYGTDYSTKDGTGVRDYIHVV 2
FNPVGAH SG +GEDP G+PNNLMPY+QQVAVGRLP L VYG DY TKDG+ VRDYIHV+
Sbjct: 250 FNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRLPELNVYGHDYPTKDGSAVRDYIHVM 71
>gb|CX183717.1|CX183717 A07_45-28_01.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 699
Score = 115 bits (245), Expect = 1e-025
Identities = 42/67 (62%), Positives = 52/67 (77%)
Frame = -2 / +3
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIGEDPCG 128
PC E+F L A NPYGRTKL +E+I RD+ +++P+W IILL YFNPVGAH SG +GEDP G
Sbjct: 480 PCVEDFNLMAMNPYGRTKLFLEEIARDIQKAEPEWSIILLXYFNPVGAHESGKLGEDPKG 659
Query: 127 VPNNLMP 107
+PN P
Sbjct: 660 IPNISCP 680
>gb|DN496017.1|DN496017 P029C05.5pR Populus petioles cDNA library Populus tremula cDNA
clone P029C05 5', mRNA sequence
Length = 877
Score = 110 bits (235), Expect = 3e-024
Identities = 42/55 (76%), Positives = 48/55 (87%)
Frame = -2 / +3
Query: 307 PCTEEFPLCATNPYGRTKLVIEDICRDVHRSDPDWKIILLRYFNPVGAHPSGYIG 143
PCTE+FPL A +PYGRTKL IE IC D++RSD +WKIILL YFNPVGAHPSG+IG
Sbjct: 711 PCTEKFPLSAASPYGRTKLFIERICCDIYRSDSEWKIILL*YFNPVGAHPSGHIG 875
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 145,953,412
Number of Sequences: 369679
Number of extensions: 1583523
Number of successful extensions: 141075
Number of sequences better than 1.0e-020: 28
length of database: 67,802,888
effective HSP length: 49
effective length of database: 49,688,617
effective search space used: 2633496701
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)