TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8635646.2.1
(573 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV255398.1|CV255398 WS02412.B21_O10 PTxD-ICC-N-A-14 Popu... 91 7e-021
gb|AJ777909.1|AJ777909 AJ777909 Populus euphratica root 3-6... 90 1e-020
gb|CV278704.1|CV278704 WS0147.B21_C16 PTxD-IL-A-5 Populus t... 90 1e-020
gb|CV226638.1|CV226638 WS0164.B21_N17 PT-DX-A-7 Populus tri... 90 1e-020
>gb|CV255398.1|CV255398 WS02412.B21_O10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02412_O10 3', mRNA sequence
Length = 550
Score = 90.9 bits (192), Expect(2) = 7e-021
Identities = 34/55 (61%), Positives = 45/55 (81%)
Frame = +2 / -1
Query: 107 ADGAADVEGSAIRRIHHALLEVHVQEGSLVCPDTSRCFPINKGIPNMMLHEDEV* 271
AD + +R++HHALLE+H++EG+LVCP+T R FP+NKGIPNM+LHEDEV*
Sbjct: 277 ADSSMLESEELLRKLHHALLELHLEEGALVCPETGRKFPVNKGIPNMLLHEDEV* 113
Score = 29.0 bits (57), Expect(2) = 7e-021
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +2 / -1
Query: 5 LLPKIDWRALVAATRAVG 58
+ PK++W+ALV A R +G
Sbjct: 352 MFPKLEWKALVDAARTMG 299
>gb|AJ777909.1|AJ777909 AJ777909 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400036H01F1, mRNA sequence
Length = 687
Score = 90.4 bits (191), Expect(2) = 1e-020
Identities = 32/44 (72%), Positives = 42/44 (95%)
Frame = +2 / +1
Query: 140 IRRIHHALLEVHVQEGSLVCPDTSRCFPINKGIPNMMLHEDEV* 271
+R++HHALLE+H++EG+LVCP+T R FP+NKGIPNM+LHEDEV*
Sbjct: 346 LRKLHHALLELHLEEGALVCPETGRKFPVNKGIPNMLLHEDEV* 477
Score = 29.0 bits (57), Expect(2) = 1e-020
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +2 / +1
Query: 5 LLPKIDWRALVAATRAVG 58
+ PK++W+ALV A R +G
Sbjct: 238 MFPKLEWKALVDAARTMG 291
>gb|CV278704.1|CV278704 WS0147.B21_C16 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0147_C16 3', mRNA sequence
Length = 681
Score = 90.4 bits (191), Expect(2) = 1e-020
Identities = 32/44 (72%), Positives = 42/44 (95%)
Frame = +2 / -2
Query: 140 IRRIHHALLEVHVQEGSLVCPDTSRCFPINKGIPNMMLHEDEV* 271
+R++HHALLE+H++EG+LVCP+T R FP+NKGIPNM+LHEDEV*
Sbjct: 317 LRKLHHALLELHLEEGALVCPETGRKFPVNKGIPNMLLHEDEV* 186
Score = 29.0 bits (57), Expect(2) = 1e-020
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +2 / -2
Query: 5 LLPKIDWRALVAATRAVG 58
+ PK++W+ALV A R +G
Sbjct: 425 MFPKLEWKALVDAARTMG 372
>gb|CV226638.1|CV226638 WS0164.B21_N17 PT-DX-A-7 Populus trichocarpa cDNA clone WS0164_N17
3', mRNA sequence
Length = 589
Score = 90.4 bits (191), Expect(2) = 1e-020
Identities = 32/44 (72%), Positives = 42/44 (95%)
Frame = +2 / -2
Query: 140 IRRIHHALLEVHVQEGSLVCPDTSRCFPINKGIPNMMLHEDEV* 271
+R++HHALLE+H++EG+LVCP+T R FP+NKGIPNM+LHEDEV*
Sbjct: 279 LRKLHHALLELHLEEGALVCPETGRKFPVNKGIPNMLLHEDEV* 148
Score = 29.0 bits (57), Expect(2) = 1e-020
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +2 / -2
Query: 5 LLPKIDWRALVAATRAVG 58
+ PK++W+ALV A R +G
Sbjct: 387 MFPKLEWKALVDAARTMG 334
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 197,074,832
Number of Sequences: 369679
Number of extensions: 2625004
Number of successful extensions: 37922
Number of sequences better than 1.0e-020: 4
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 6803947001
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)