TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3345642.2.1
(600 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV242604.1|CV242604 WS02515.B21_I09 PT-MB-N-A-15 Populus... 318 2e-086
gb|CA926791.1|CA926791 MTU6CR.P1.B12 Aspen root cDNA Librar... 278 2e-074
gb|CA927414.1|CA927414 MTU6CR.P8.G03 Aspen root cDNA Librar... 278 2e-074
gb|CV263738.1|CV263738 WS02022.B21_K12 PTxN-IB-N-A-11 Popul... 206 6e-072
gb|CB176640.1|CB176640 PopSC00063 Poplar SC cDNA library Po... 244 4e-064
gb|CF232874.1|CF232874 PtaJXO0016G8G0814 Poplar cDNA librar... 242 1e-063
gb|CV257130.1|CV257130 WS0245.B21_M05 PTxD-ICC-N-A-14 Popul... 237 6e-062
gb|CK097179.1|CK097179 UB42BPD03.3pR Populus active cambium... 232 2e-060
gb|DT515203.1|DT515203 WS02426.B21_O22 PTxD-ICC-N-A-14 Popu... 232 2e-060
gb|DT507435.1|DT507435 WS02418.BR_E03 PTxD-ICC-N-A-14 Popul... 229 1e-059
gb|DT512063.1|DT512063 WS02418.B21_E03 PTxD-ICC-N-A-14 Popu... 229 1e-059
gb|CV240226.1|CV240226 WS0234.B21_M19 PT-MB-A-13 Populus tr... 229 1e-059
gb|CV257505.1|CV257505 WS0246.B21_N16 PTxD-ICC-N-A-14 Popul... 197 5e-050
gb|CK091185.1|CK091185 F056P93.3pR Populus flower cDNA libr... 193 9e-050
gb|CV231822.1|CV231822 WS0195.B21_K18 PT-DX-N-A-10 Populus ... 189 1e-047
gb|DT507569.1|DT507569 WS02418.BR_J21 PTxD-ICC-N-A-14 Popul... 182 2e-045
gb|DT512195.1|DT512195 WS02418.B21_J21 PTxD-ICC-N-A-14 Popu... 182 2e-045
gb|CV261347.1|CV261347 WS02016.B21_I14 PTxN-IB-N-A-11 Popul... 181 4e-045
gb|DT525892.1|DT525892 WS02046.C21_J03 PTxN-IB-N-A-11 Popul... 181 4e-045
gb|DN484940.1|DN484940 K040P50.3pR Populus apical shoot cDN... 167 4e-044
gb|CK088858.1|CK088858 A076P21.3pR Hybrid aspen plasmid lib... 148 7e-044
gb|CK318930.1|CK318930 X9P04h10 Populus stem seasonal libra... 106 4e-043
gb|CX660230.1|CX660230 PO01019F01 Poplar SC cDNA library Po... 172 2e-042
gb|CN549595.1|CN549595 GQ0241.B3_D18 GQ024 Populus trichoca... 109 2e-042
gb|CX654661.1|CX654661 PO02057G05 Poplar SC cDNA library Po... 151 3e-036
gb|CX656255.1|CX656255 PO02051A03 Poplar SC cDNA library Po... 147 5e-035
gb|CX170763.1|CX170763 G07_69-32_13.ab1 leaf inoculated wit... 143 9e-034
gb|CX659010.1|CX659010 PO01025C10 Poplar SC cDNA library Po... 138 3e-032
gb|CK099450.1|CK099450 A068P23.5pR Hybrid aspen plasmid lib... 131 3e-030
gb|CV235910.1|CV235910 WS01222.B21_B08 PT-GT-FL-A-3 Populus... 85 6e-030
gb|CK102216.1|CK102216 G069P39.5pR Populus tension wood cDN... 88 3e-029
gb|BU824298.1|BU824298 UB62BPE10 Populus tremula cambium cD... 121 2e-028
gb|BI127787.1|BI127787 G066P03Y Populus cambium cDNA librar... 124 4e-028
gb|BU868361.1|BU868361 M115A04 Populus flower cDNA library ... 121 4e-027
gb|CX659267.1|CX659267 PO01028E05 Poplar SC cDNA library Po... 121 4e-027
gb|CK106989.1|CK106989 UB42BPD03.5pR Populus active cambium... 115 3e-025
gb|BI127989.1|BI127989 G069P39Y Populus cambium cDNA librar... 88 9e-025
gb|BU837261.1|BU837261 T096G03 Populus apical shoot cDNA li... 84 4e-024
gb|BU812059.1|BU812059 UL91TG07 Populus leaf cDNA library P... 88 7e-023
gb|BP936699.1|BP936699 BP936699 full-length enriched poplar... 100 3e-022
gb|CV231091.1|CV231091 WS0193.B21_I08 PT-DX-N-A-10 Populus ... 105 3e-022
gb|CV231376.1|CV231376 WS0194.B21_F18 PT-DX-N-A-10 Populus ... 104 5e-022
>gb|CV242604.1|CV242604 WS02515.B21_I09 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02515_I09 3', mRNA sequence
Length = 904
Score = 318 bits (689), Expect = 2e-086
Identities = 118/164 (71%), Positives = 138/164 (84%)
Frame = +1 / -1
Query: 7 GNVIGAVETCLESFHRYHKYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLY 186
GNV GAVETCLE+FHRY+KY+NFS+P ISSK DP CGWAFGMN+FDLIAWRK N T+ Y
Sbjct: 844 GNVNGAVETCLEAFHRYYKYINFSNPVISSKFDPQACGWAFGMNVFDLIAWRKENVTARY 665
Query: 187 HYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHY 366
HYWQEQN D +LW+ GTLP LL FYGL E LDRRWHVLGLGYD++IDDRLI+SAAV+H+
Sbjct: 664 HYWQEQNGDQMLWKLGTLPPALLAFYGLTETLDRRWHVLGLGYDMNIDDRLIDSAAVIHF 485
Query: 367 NGNMKPWLKLAIRRYKYIWERYVNISHPYVRECMLH*KVCKSLY 498
NGNMKPWLKLAI RYK +WERY+N SHPY ++C++ * + Y
Sbjct: 484 NGNMKPWLKLAIGRYKPLWERYINQSHPYYQDCVIS*NLLLFYY 353
Score = 185 bits (398), Expect = 2e-046
Identities = 89/149 (59%), Positives = 97/149 (65%)
Frame = -2 / +3
Query: 452 YGCEIFTYRSHIYL*RRIASFSQGFMFPL*CTTAALSIRRSSMSTSYPRPKTCHLRSRGS 273
YG F Y S L +A+F+ GFMFPL TAALSI SSM SYP P TCHLRS S
Sbjct: 399 YGWL*FMYLSQRGLYLPMANFNHGFMFPLK*ITAALSISLSSMFMSYPNPNTCHLRSSVS 578
Query: 272 IRP*NVKRPAGRVPVLQSNRSEFCSCQ**YNDVAFAFLQAIKSKMFIPKAHPQVCGSILE 93
+ P*N +R G VP S S FCSCQ**Y V F+FL AIKSK FIP A P CGS E
Sbjct: 579 VSP*NARRAGGSVPSFHSI*SPFCSCQ**YRAVTFSFLHAIKSKTFIPNAQPHACGSNFE 758
Query: 92 LIVGCEKFRYL*YR*NDSKQVSTAPMTLP 6
L+ G EK YL*YR*N S+QVSTAP T P
Sbjct: 759 LMTGLEKLIYL*YR*NASRQVSTAPFTFP 845
Score = 144 bits (308), Expect = 6e-034
Identities = 70/149 (46%), Positives = 95/149 (63%)
Frame = -1 / +2
Query: 465 TLSNIRV*DIHIPFPYILVTANSQLQPGFHVSIIVHNSSTLNQTIIYVYIIPETQDMPSA 286
T+ IRV I++PFP LV+AN Q QP FHV + V+N ST+NQ +I V++I ++ MPS
Sbjct: 386 TILVIRVALIYVPFPKRLVSANGQFQPWFHVPVKVNNCSTVNQPVINVHVISQS*HMPSP 565
Query: 285 V*GLHQAIKCQKACRKSSCSPEQ*VRILLLPIMIQ*CGVCLPPSYQVKNVHSKSPSTSMW 106
+ L Q+IKC K + S P+ + IL LP+MI + LPP Q+KNVHSK P+T +
Sbjct: 566 IKCLGQSIKC*KGRGECSQFPQHLITILFLPVMIPRSHIFLPPCNQIKNVHSKCPTTCLR 745
Query: 105 INLGADSRMRKI*ILVIPMKRL*TSFHCS 19
+ AD +R+I ILVI MK T FH S
Sbjct: 746 VEF*ADDWVREIDILVISMKCFKTGFHSS 832
Score = 114 bits (243), Expect = 6e-025
Identities = 58/152 (38%), Positives = 82/152 (53%)
Frame = +3 / -3
Query: 9 QCHWSSGNLFRXXXXXXXXXKFFASYYQLQD*STYLWMGFWNEHF*LDSLEEGKRHIIVS 188
+C WS GNL +F +QL+ +W+G WNE F* D +EEGK VS
Sbjct: 842 ECKWSCGNLS*SISSILQVYQFL*PSHQLKIRPAGMWLGIWNERF*FDCMEEGKCDCAVS 663
Query: 189 LLARAKF*PIALENRNSSCRPFDILWPDGAPRPQMACLGSRV*CRHR*SSD*ECCCCAL* 368
LLA ++* A+E N+ P ILW D +MAC+ +* H * +D*+CC +L*
Sbjct: 662 LLAGTEW*SDAVETGNTPPCPSSILWTDRDT*SEMACVRIGI*HEH**QAD*QCCSYSL* 483
Query: 369 WKHETLAEAGYSPLQVYMGTVCEYLTPVC*RV 464
+HET+ E G+ +Q +G V + PV R+
Sbjct: 482 REHETMVEIGHWQIQASLGKVHKSEPPVLPRL 387
>gb|CA926791.1|CA926791 MTU6CR.P1.B12 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 525
Score = 278 bits (602), Expect = 2e-074
Identities = 104/132 (78%), Positives = 117/132 (88%)
Frame = +1 / +1
Query: 7 GNVIGAVETCLESFHRYHKYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLY 186
GNV GA+ETCLE+FHRY+KY+NFS+P ISSK DP CGWAFGMNIFDLIAWRK N T+ Y
Sbjct: 127 GNVNGAMETCLETFHRYYKYINFSNPIISSKFDPQACGWAFGMNIFDLIAWRKENVTAQY 306
Query: 187 HYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHY 366
HYWQEQN+D LW+ GTLP LL FYGL EPLDRRWHVLGLGYD++IDDRLI+SAAV+H+
Sbjct: 307 HYWQEQNADQTLWKLGTLPPALLAFYGLTEPLDRRWHVLGLGYDMNIDDRLIDSAAVIHF 486
Query: 367 NGNMKPWLKLAI 402
NGNMKPWLKLAI
Sbjct: 487 NGNMKPWLKLAI 522
Score = 188 bits (404), Expect = 4e-047
Identities = 85/132 (64%), Positives = 95/132 (71%)
Frame = -2 / -2
Query: 401 IASFSQGFMFPL*CTTAALSIRRSSMSTSYPRPKTCHLRSRGSIRP*NVKRPAGRVPVLQ 222
+A+ S GFMFPL TAALSIRRSSM SYP P TCHLRS GS+ P*N +R G VP
Sbjct: 521 MANLSHGFMFPLK*ITAALSIRRSSMFISYPNPNTCHLRSSGSVSP*NARRAGGSVPSFH 342
Query: 221 SNRSEFCSCQ**YNDVAFAFLQAIKSKMFIPKAHPQVCGSILELIVGCEKFRYL*YR*ND 42
S S FCSCQ**Y V F+FL AIKSK+FIP A P CGS LEL++G EK YL*YR N
Sbjct: 341 SV*SAFCSCQ**YCAVTFSFLHAIKSKIFIPNAQPHACGSNLELMIGFEKLIYL*YRWNV 162
Query: 41 SKQVSTAPMTLP 6
S+QVS AP+T P
Sbjct: 161 SRQVSIAPLTFP 126
Score = 125 bits (268), Expect = 2e-028
Identities = 62/132 (46%), Positives = 84/132 (63%)
Frame = -1 / -1
Query: 405 ANSQLQPGFHVSIIVHNSSTLNQTIIYVYIIPETQDMPSAV*GLHQAIKCQKACRKSSCS 226
AN Q +P FHV I V+N ST+NQT+I V+II ++ MPS + L Q+IKC K + S
Sbjct: 525 ANGQFKPWFHVPIKVNNRSTVNQTVINVHIISQS*HMPSPIKRLSQSIKC*KGWGECS*L 346
Query: 225 PEQ*VRILLLPIMIQ*CGVCLPPSYQVKNVHSKSPSTSMWINLGADSRMRKI*ILVIPMK 46
P+ + IL LP+MI + LPP Q+KN+HSK P+T + + AD + KI ILVI M+
Sbjct: 345 PQCLISILFLPVMILCSHIFLPPCNQIKNIHSKRPTTCLRVKFRADDWV*KIDILVISME 166
Query: 45 RL*TSFHCSNDI 10
TSFH S +I
Sbjct: 165 CFKTSFHSSINI 130
Score = 114 bits (243), Expect = 6e-025
Identities = 56/131 (42%), Positives = 75/131 (57%)
Frame = +3 / +3
Query: 9 QCHWSSGNLFRXXXXXXXXXKFFASYYQLQD*STYLWMGFWNEHF*LDSLEEGKRHIIVS 188
+C WS GNL +FF +QL * +W+G WNE+F* D +EEGK +S
Sbjct: 129 EC*WSYGNLS*NIPSILQVYQFFKPNHQL*I*PAGMWLGVWNEYF*FDCMEEGKCDCTIS 308
Query: 189 LLARAKF*PIALENRNSSCRPFDILWPDGAPRPQMACLGSRV*CRHR*SSD*ECCCCAL* 368
LLA + * +E RN+ P ILW D A +MAC+ +* H * SD*+CC +L*
Sbjct: 309 LLAGTEC*SDTVEARNTPPSPSSILWTD*AA*SEMACVRIGI*YEH**PSD*QCCGYSL* 488
Query: 369 WKHETLAEAGY 401
W+HET+A G+
Sbjct: 489 WEHETMA*IGH 521
>gb|CA927414.1|CA927414 MTU6CR.P8.G03 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 525
Score = 278 bits (602), Expect = 2e-074
Identities = 104/132 (78%), Positives = 117/132 (88%)
Frame = +1 / +1
Query: 7 GNVIGAVETCLESFHRYHKYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLY 186
GNV GA+ETCLE+FHRY+KY+NFS+P ISSK DP CGWAFGMNIFDLIAWRK N T+ Y
Sbjct: 127 GNVNGAMETCLETFHRYYKYINFSNPIISSKFDPQACGWAFGMNIFDLIAWRKENVTAQY 306
Query: 187 HYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHY 366
HYWQEQN+D LW+ GTLP LL FYGL EPLDRRWHVLGLGYD++IDDRLI+SAAV+H+
Sbjct: 307 HYWQEQNADQTLWKLGTLPPALLAFYGLTEPLDRRWHVLGLGYDMNIDDRLIDSAAVIHF 486
Query: 367 NGNMKPWLKLAI 402
NGNMKPWLKLAI
Sbjct: 487 NGNMKPWLKLAI 522
Score = 188 bits (404), Expect = 4e-047
Identities = 85/132 (64%), Positives = 95/132 (71%)
Frame = -2 / -2
Query: 401 IASFSQGFMFPL*CTTAALSIRRSSMSTSYPRPKTCHLRSRGSIRP*NVKRPAGRVPVLQ 222
+A+ S GFMFPL TAALSIRRSSM SYP P TCHLRS GS+ P*N +R G VP
Sbjct: 521 MANLSHGFMFPLK*ITAALSIRRSSMFISYPNPNTCHLRSSGSVSP*NARRAGGSVPSFH 342
Query: 221 SNRSEFCSCQ**YNDVAFAFLQAIKSKMFIPKAHPQVCGSILELIVGCEKFRYL*YR*ND 42
S S FCSCQ**Y V F+FL AIKSK+FIP A P CGS LEL++G EK YL*YR N
Sbjct: 341 SV*SAFCSCQ**YCAVTFSFLHAIKSKIFIPNAQPHACGSNLELMIGFEKLIYL*YRWNV 162
Query: 41 SKQVSTAPMTLP 6
S+QVS AP+T P
Sbjct: 161 SRQVSIAPLTFP 126
Score = 125 bits (268), Expect = 2e-028
Identities = 62/132 (46%), Positives = 84/132 (63%)
Frame = -1 / -1
Query: 405 ANSQLQPGFHVSIIVHNSSTLNQTIIYVYIIPETQDMPSAV*GLHQAIKCQKACRKSSCS 226
AN Q +P FHV I V+N ST+NQT+I V+II ++ MPS + L Q+IKC K + S
Sbjct: 525 ANGQFKPWFHVPIKVNNRSTVNQTVINVHIISQS*HMPSPIKRLSQSIKC*KGWGECS*L 346
Query: 225 PEQ*VRILLLPIMIQ*CGVCLPPSYQVKNVHSKSPSTSMWINLGADSRMRKI*ILVIPMK 46
P+ + IL LP+MI + LPP Q+KN+HSK P+T + + AD + KI ILVI M+
Sbjct: 345 PQCLISILFLPVMILCSHIFLPPCNQIKNIHSKRPTTCLRVKFRADDWV*KIDILVISME 166
Query: 45 RL*TSFHCSNDI 10
TSFH S +I
Sbjct: 165 CFKTSFHSSINI 130
Score = 114 bits (243), Expect = 6e-025
Identities = 56/131 (42%), Positives = 75/131 (57%)
Frame = +3 / +3
Query: 9 QCHWSSGNLFRXXXXXXXXXKFFASYYQLQD*STYLWMGFWNEHF*LDSLEEGKRHIIVS 188
+C WS GNL +FF +QL * +W+G WNE+F* D +EEGK +S
Sbjct: 129 EC*WSYGNLS*NIPSILQVYQFFKPNHQL*I*PAGMWLGVWNEYF*FDCMEEGKCDCTIS 308
Query: 189 LLARAKF*PIALENRNSSCRPFDILWPDGAPRPQMACLGSRV*CRHR*SSD*ECCCCAL* 368
LLA + * +E RN+ P ILW D A +MAC+ +* H * SD*+CC +L*
Sbjct: 309 LLAGTEC*SDTVEARNTPPSPSSILWTD*AA*SEMACVRIGI*YEH**PSD*QCCGYSL* 488
Query: 369 WKHETLAEAGY 401
W+HET+A G+
Sbjct: 489 WEHETMA*IGH 521
>gb|CV263738.1|CV263738 WS02022.B21_K12 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02022_K12 3', mRNA sequence
Length = 937
Score = 206 bits (444), Expect(2) = 6e-072
Identities = 74/102 (72%), Positives = 82/102 (80%)
Frame = +1 / -2
Query: 10 NVIGAVETCLESFHRYHKYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLYH 189
NV GAVETC+E+FHRYHKYLN+SHP I DP CGWAFGMN+FDL+ WRK N T +YH
Sbjct: 651 NVNGAVETCMETFHRYHKYLNYSHPLIREHFDPDACGWAFGMNVFDLVEWRKRNVTEIYH 472
Query: 190 YWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGY 315
YWQE+N D LW+ GTLP GLLTFYGL EPLD WHVLGLGY
Sbjct: 471 YWQEKNVDRTLWKLGTLPPGLLTFYGLTEPLDPSWHVLGLGY 346
Score = 115 bits (246), Expect(2) = 5e-029
Identities = 57/101 (56%), Positives = 61/101 (60%)
Frame = -2 / +2
Query: 311 PRPKTCHLRSRGSIRP*NVKRPAGRVPVLQSNRSEFCSCQ**YNDVAFAFLQAIKSKMFI 132
P P TCH S+GS+ P* VK P G VP S RS F SCQ* V F FL + KSK FI
Sbjct: 350 PNPNTCHEGSKGSVNP*KVKSPGGSVPSFHSVRSTFFSCQ*W*ISVTFRFLHSTKSKTFI 529
Query: 131 PKAHPQVCGSILELIVGCEKFRYL*YR*NDSKQVSTAPMTL 9
P A P GS LI G E FRYL Y *N S VSTAP+TL
Sbjct: 530 PNAQPHASGSKCSLIRG*E*FRYLWYL*NVSMHVSTAPLTL 652
Score = 84.9 bits (179), Expect(2) = 6e-072
Identities = 28/52 (53%), Positives = 41/52 (78%)
Frame = +1 / -2
Query: 322 DIDDRLIESAAVVHYNGNMKPWLKLAIRRYKYIWERYVNISHPYVRECMLH* 477
++D LIE AV+H+NGN KPWLK+ + +YK +WE+YV+ SHP +++C LH*
Sbjct: 342 NVDPHLIEKGAVLHFNGNSKPWLKIGMEKYKSLWEKYVDYSHPLLQQCNLH* 187
Score = 31.8 bits (63), Expect(2) = 5e-029
Identities = 18/46 (39%), Positives = 21/46 (45%)
Frame = -2 / +2
Query: 473 CNIHSLTYGCEIFTYRSHIYL*RRIASFSQGFMFPL*CTTAALSIR 336
C +H G TY S L I F+ G FPL C TA SI+
Sbjct: 191 CKLHCCNKG*L*STYFSQRDLYFSIPIFNHGLEFPLKCNTAPFSIK 328
>gb|CB176640.1|CB176640 PopSC00063 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PopSC00063, mRNA sequence
Length = 473
Score = 244 bits (527), Expect = 4e-064
Identities = 92/118 (77%), Positives = 103/118 (87%)
Frame = +1 / +2
Query: 7 GNVIGAVETCLESFHRYHKYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLY 186
GNV GAVETCLE+FHRY+KY+NFS+P ISSK DP CGWAFGMNIFDLIAWRK N T+ Y
Sbjct: 119 GNVNGAVETCLETFHRYYKYINFSNPIISSKFDPQACGWAFGMNIFDLIAWRKENVTAQY 298
Query: 187 HYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVV 360
HYWQEQN+D LW+ GTLP LL FYGL EPLDRRWHVLGLGYD++IDDRLI+SAAV+
Sbjct: 299 HYWQEQNADQTLWKLGTLPPALLAFYGLTEPLDRRWHVLGLGYDMNIDDRLIDSAAVI 472
Score = 171 bits (368), Expect = 3e-042
Identities = 77/117 (65%), Positives = 85/117 (72%)
Frame = -2 / -3
Query: 356 TAALSIRRSSMSTSYPRPKTCHLRSRGSIRP*NVKRPAGRVPVLQSNRSEFCSCQ**YND 177
TAALSIRRSSM SYP P TCHLRS GS+ P*N +R G VP S S FCSCQ**Y
Sbjct: 468 TAALSIRRSSMFISYPNPNTCHLRSSGSVSP*NARRAGGSVPSFHSV*SAFCSCQ**YCA 289
Query: 176 VAFAFLQAIKSKMFIPKAHPQVCGSILELIVGCEKFRYL*YR*NDSKQVSTAPMTLP 6
V F+FL AIKSK+FIP A P CGS LEL++G EK YL*Y N S+QVSTAP+T P
Sbjct: 288 VTFSFLHAIKSKIFIPNAQPHACGSNLELMIGFEKLIYL*YLWNVSRQVSTAPLTFP 118
Score = 102 bits (217), Expect = 2e-021
Identities = 51/117 (43%), Positives = 73/117 (62%)
Frame = -1 / -2
Query: 360 HNSSTLNQTIIYVYIIPETQDMPSAV*GLHQAIKCQKACRKSSCSPEQ*VRILLLPIMIQ 181
+N ST+ QT+I V+II ++ MPS + L Q+IKC K + S P+ + IL LP+MI
Sbjct: 472 NNRSTVYQTVINVHIISQS*HMPSPIKRLSQSIKC*KGWGECSQLPQCLISILFLPVMIL 293
Query: 180 *CGVCLPPSYQVKNVHSKSPSTSMWINLGADSRMRKI*ILVIPMKRL*TSFHCSNDI 10
+ LPP Q+KN+HSK P+T + + AD + KI IL+I M+ TSFH S +I
Sbjct: 292 CSHIFLPPCNQIKNIHSKRPTTCLRVKFRADDWV*KIDILIISMECFKTSFHSSINI 122
>gb|CF232874.1|CF232874 PtaJXO0016G8G0814 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 758
Score = 242 bits (523), Expect = 1e-063
Identities = 90/154 (58%), Positives = 113/154 (73%)
Frame = +1 / +1
Query: 4 RGNVIGAVETCLESFHRYHKYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSL 183
+G V GAVETC ESFHR+ KYLNFS+P I + DP+ CGWAF MN+FDL W+ +N T +
Sbjct: 241 QGMVNGAVETCKESFHRFDKYLNFSNPKIYNNFDPNACGWAFDMNMFDLKQWKISNITGI 420
Query: 184 YHYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVH 363
YH+WQ+ N D LW+ G+LP GL+TFY L PLDR WHVLGLGYD ++ IE+AAVVH
Sbjct: 421 YHHWQDLNEDRTLWKLGSLPPGLITFYNLTYPLDRSWHVLGLGYDPALNQTEIENAAVVH 600
Query: 364 YNGNMKPWLKLAIRRYKYIWERYVNISHPYVREC 465
YNGN KP L LA+ +YK W R+V +PY+ +C
Sbjct: 601 YNGNYKPXLDLAVAKYKPYWSRFVQYDNPYLHQC 702
Score = 118 bits (253), Expect = 2e-026
Identities = 67/131 (51%), Positives = 72/131 (54%)
Frame = -2 / -1
Query: 398 ASFSQGFMFPL*CTTAALSIRRSSMSTSYPRPKTCHLRSRGSIRP*NVKRPAGRVPVLQS 219
A + G FPL* TTAA SI + S P PKTC LRS G +R * V P G P Q
Sbjct: 635 AKSNXGL*FPL**TTAAFSISVWLRAGS*PSPKTCQLRSSG*VRL*KVMSPGGNEPNFQR 456
Query: 218 NRSEFCSCQ**YNDVAFAFLQAIKSKMFIPKAHPQVCGSILELIVGCEKFRYL*YR*NDS 39
S F SCQ**Y V F KS MF+ AHPQ GS L I G EKFRYL * S
Sbjct: 455 VLSSFRSCQ**YIPVIFEIFHCFKSNMFMSNAHPQAFGSKLL*IFGFEKFRYLSNL*KLS 276
Query: 38 KQVSTAPMTLP 6
VSTAP T+P
Sbjct: 275 LHVSTAPFTIP 243
>gb|CV257130.1|CV257130 WS0245.B21_M05 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0245_M05 3', mRNA sequence
Length = 718
Score = 237 bits (511), Expect = 6e-062
Identities = 88/153 (57%), Positives = 107/153 (69%)
Frame = +1 / -3
Query: 7 GNVIGAVETCLESFHRYHKYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLY 186
G V GAVETC SFHRY +YLNFSHP I + +P C WAFGMNIFDL AWR+ T Y
Sbjct: 680 GKVNGAVETCFGSFHRYAQYLNFSHPLIKERFNPKACAWAFGMNIFDLDAWRREKCTEHY 501
Query: 187 HYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHY 366
HYWQ N D LW+ GTLP GL+TFY + LD+ WHVLGLGY+ I I +AAV+HY
Sbjct: 500 HYWQSLNEDRTLWKLGTLPPGLITFYSTTKSLDKSWHVLGLGYNPSISMDEISNAAVIHY 321
Query: 367 NGNMKPWLKLAIRRYKYIWERYVNISHPYVREC 465
NGNMKPWL +A+ +YK +W +YV+ +V+ C
Sbjct: 320 NGNMKPWLDIAMNQYKNLWTKYVDNDMEFVQMC 222
Score = 142 bits (304), Expect = 2e-033
Identities = 79/154 (51%), Positives = 88/154 (57%)
Frame = -2 / +1
Query: 467 IHSLTYGCEIFTYRSHIYL*RRIASFSQGFMFPL*CTTAALSIRRSSMSTSYPRPKTCHL 288
+H T + TY +L IA S GFMFPL* TAAL I + YPRP TC
Sbjct: 220 LHI*TNSISLSTYLVQRFLYWFIAMSSHGFMFPL**MTAALLISSMLILGLYPRPSTCQD 399
Query: 287 RSRGSIRP*NVKRPAGRVPVLQSNRSEFCSCQ**YNDVAFAFLQAIKSKMFIPKAHPQVC 108
S + * V +P GRVP Q RS F CQ** V F+ LQA +S +FIPKA Q
Sbjct: 400 LSSDFVVE*KVIKPGGRVPNFQRVRSSFRLCQ***CSVHFSRLQASRSNIFIPKAQAQAL 579
Query: 107 GSILELIVGCEKFRYL*YR*NDSKQVSTAPMTLP 6
G L LI GCEKFRY R*ND KQVSTAP TLP
Sbjct: 580 GLNLSLIKGCEKFRYCA*R*NDPKQVSTAPFTLP 681
>gb|CK097179.1|CK097179 UB42BPD03.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB42BPD03 3', mRNA sequence
Length = 740
Score = 232 bits (501), Expect = 2e-060
Identities = 85/153 (55%), Positives = 108/153 (70%)
Frame = +1 / -2
Query: 7 GNVIGAVETCLESFHRYHKYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLY 186
G V GAVETC SFHRY +Y+NFSHP I K +P C WA+GMN FDL AWR+ T Y
Sbjct: 682 GKVNGAVETCFGSFHRYAQYMNFSHPLIKEKFNPKACAWAYGMNFFDLDAWRREKCTEEY 503
Query: 187 HYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHY 366
HYWQ N + LW+ GTLP GL+TFY +PLD+ WHVLGLGY+ I I+SAAVVH+
Sbjct: 502 HYWQNLNENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIQSAAVVHF 323
Query: 367 NGNMKPWLKLAIRRYKYIWERYVNISHPYVREC 465
NGNMKPWL +A+ ++K +W ++V+ +V+ C
Sbjct: 322 NGNMKPWLDIAMTQFKPLWTKHVDYELEFVQAC 224
Score = 138 bits (296), Expect = 3e-032
Identities = 71/132 (53%), Positives = 78/132 (59%)
Frame = -2 / +3
Query: 401 IASFSQGFMFPL*CTTAALSIRRSSMSTSYPRPKTCHLRSRGSIRP*NVKRPAGRVPVLQ 222
IA S GF+FPL CTTAA I M YP P+TCH S G + *NV +P G VP
Sbjct: 288 IAISSHGFIFPLKCTTAAD*ISSILMLGLYPSPRTCHDLSSGFVVE*NVIKPGGSVPNFH 467
Query: 221 SNRSEFCSCQ**YNDVAFAFLQAIKSKMFIPKAHPQVCGSILELIVGCEKFRYL*YR*ND 42
R F CQ**Y+ V F+ LQA KSK F+P A Q G LI GCEKF Y Y *ND
Sbjct: 468 KVRFSFRFCQ**YSSVHFSLLQASKSKKFMPYAQAQAFGLNFSLIRGCEKFIY*AYL*ND 647
Query: 41 SKQVSTAPMTLP 6
KQVSTAP T P
Sbjct: 648 PKQVSTAPFTFP 683
>gb|DT515203.1|DT515203 WS02426.B21_O22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02426_O22 3', mRNA sequence
Length = 918
Score = 232 bits (501), Expect = 2e-060
Identities = 85/153 (55%), Positives = 108/153 (70%)
Frame = +1 / -3
Query: 7 GNVIGAVETCLESFHRYHKYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLY 186
G V GAVETC SFHRY +Y+NFSHP I K +P C WA+GMN FDL AWR+ T Y
Sbjct: 751 GKVNGAVETCFGSFHRYAQYMNFSHPLIKEKFNPKACAWAYGMNFFDLDAWRREKCTEEY 572
Query: 187 HYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHY 366
HYWQ N + LW+ GTLP GL+TFY +PLD+ WHVLGLGY+ I I+SAAVVH+
Sbjct: 571 HYWQNLNENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIQSAAVVHF 392
Query: 367 NGNMKPWLKLAIRRYKYIWERYVNISHPYVREC 465
NGNMKPWL +A+ ++K +W ++V+ +V+ C
Sbjct: 391 NGNMKPWLDIAMTQFKPLWTKHVDYELEFVQAC 293
Score = 138 bits (297), Expect = 2e-032
Identities = 71/132 (53%), Positives = 78/132 (59%)
Frame = -2 / +3
Query: 401 IASFSQGFMFPL*CTTAALSIRRSSMSTSYPRPKTCHLRSRGSIRP*NVKRPAGRVPVLQ 222
IA S GF+FPL CTTAA I M YP P+TCH S G + *NV +P G VP
Sbjct: 357 IAISSHGFIFPLKCTTAAD*ISSILMLGLYPSPRTCHDLSSGFVVE*NVIKPGGSVPNFH 536
Query: 221 SNRSEFCSCQ**YNDVAFAFLQAIKSKMFIPKAHPQVCGSILELIVGCEKFRYL*YR*ND 42
R F CQ**Y+ V F+ LQA KSK F+P A Q G LI GCEKF Y Y *ND
Sbjct: 537 KVRFSFRFCQ**YSSVHFSLLQASKSKKFMPYAQAQAFGLNFSLIKGCEKFIY*AYL*ND 716
Query: 41 SKQVSTAPMTLP 6
KQVSTAP T P
Sbjct: 717 PKQVSTAPFTFP 752
>gb|DT507435.1|DT507435 WS02418.BR_E03 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02418_E03 5', mRNA sequence
Length = 735
Score = 229 bits (495), Expect = 1e-059
Identities = 84/151 (55%), Positives = 107/151 (70%)
Frame = +1 / +1
Query: 13 VIGAVETCLESFHRYHKYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLYHY 192
V GAVETC SFHRY +Y+NFSHP I K +P C WA+GMN FDL AWR+ T YHY
Sbjct: 4 VNGAVETCFGSFHRYAQYMNFSHPLIKEKFNPKACAWAYGMNFFDLDAWRREKCTEEYHY 183
Query: 193 WQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHYNG 372
WQ N + LW+ GTLP GL+TFY +PLD+ WHVLGLGY+ I I+SAAVVH+NG
Sbjct: 184 WQNLNENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIQSAAVVHFNG 363
Query: 373 NMKPWLKLAIRRYKYIWERYVNISHPYVREC 465
NMKPWL +A+ ++K +W ++V+ +V+ C
Sbjct: 364 NMKPWLDIAMTQFKPLWTKHVDYELEFVQAC 456
Score = 135 bits (290), Expect = 2e-031
Identities = 70/130 (53%), Positives = 77/130 (59%)
Frame = -2 / -2
Query: 401 IASFSQGFMFPL*CTTAALSIRRSSMSTSYPRPKTCHLRSRGSIRP*NVKRPAGRVPVLQ 222
IA S GF+FPL CTTAA I M YP P+TCH S G + *NV +P G VP
Sbjct: 392 IAISSHGFIFPLKCTTAAD*ISSILMLGLYPSPRTCHDLSSGFVVE*NVIKPGGSVPNFH 213
Query: 221 SNRSEFCSCQ**YNDVAFAFLQAIKSKMFIPKAHPQVCGSILELIVGCEKFRYL*YR*ND 42
R F CQ**Y+ V F+ LQA KSK F+P A Q G LI GCEKF Y Y *ND
Sbjct: 212 KVRFSFRFCQ**YSSVHFSLLQASKSKKFMPYAQAQAFGLNFSLIKGCEKFIY*AYL*ND 33
Query: 41 SKQVSTAPMT 12
KQVSTAP T
Sbjct: 32 PKQVSTAPFT 3
>gb|DT512063.1|DT512063 WS02418.B21_E03 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02418_E03 3', mRNA sequence
Length = 748
Score = 229 bits (495), Expect = 1e-059
Identities = 84/151 (55%), Positives = 107/151 (70%)
Frame = +1 / -1
Query: 13 VIGAVETCLESFHRYHKYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLYHY 192
V GAVETC SFHRY +Y+NFSHP I K +P C WA+GMN FDL AWR+ T YHY
Sbjct: 745 VNGAVETCFGSFHRYAQYMNFSHPLIKEKFNPKACAWAYGMNFFDLDAWRREKCTEEYHY 566
Query: 193 WQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHYNG 372
WQ N + LW+ GTLP GL+TFY +PLD+ WHVLGLGY+ I I+SAAVVH+NG
Sbjct: 565 WQNLNENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIQSAAVVHFNG 386
Query: 373 NMKPWLKLAIRRYKYIWERYVNISHPYVREC 465
NMKPWL +A+ ++K +W ++V+ +V+ C
Sbjct: 385 NMKPWLDIAMTQFKPLWTKHVDYELEFVQAC 293
Score = 135 bits (290), Expect = 2e-031
Identities = 70/130 (53%), Positives = 77/130 (59%)
Frame = -2 / +3
Query: 401 IASFSQGFMFPL*CTTAALSIRRSSMSTSYPRPKTCHLRSRGSIRP*NVKRPAGRVPVLQ 222
IA S GF+FPL CTTAA I M YP P+TCH S G + *NV +P G VP
Sbjct: 357 IAISSHGFIFPLKCTTAAD*ISSILMLGLYPSPRTCHDLSSGFVVE*NVIKPGGSVPNFH 536
Query: 221 SNRSEFCSCQ**YNDVAFAFLQAIKSKMFIPKAHPQVCGSILELIVGCEKFRYL*YR*ND 42
R F CQ**Y+ V F+ LQA KSK F+P A Q G LI GCEKF Y Y *ND
Sbjct: 537 KVRFSFRFCQ**YSSVHFSLLQASKSKKFMPYAQAQAFGLNFSLIKGCEKFIY*AYL*ND 716
Query: 41 SKQVSTAPMT 12
KQVSTAP T
Sbjct: 717 PKQVSTAPFT 746
>gb|CV240226.1|CV240226 WS0234.B21_M19 PT-MB-A-13 Populus trichocarpa cDNA clone WS0234_M19
3', mRNA sequence
Length = 733
Score = 229 bits (494), Expect = 1e-059
Identities = 83/149 (55%), Positives = 106/149 (71%)
Frame = +1 / -2
Query: 19 GAVETCLESFHRYHKYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLYHYWQ 198
GAVETC SFHRY +Y+NFSHP I K +P C WA+GMN FDL AWR+ T YHYWQ
Sbjct: 729 GAVETCFGSFHRYAQYMNFSHPLIKEKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQ 550
Query: 199 EQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHYNGNM 378
N + LW+ GTLP GL+TFY +PLD+ WHVLGLGY+ I I+SAAVVH+NGNM
Sbjct: 549 NLNENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIQSAAVVHFNGNM 370
Query: 379 KPWLKLAIRRYKYIWERYVNISHPYVREC 465
KPWL +A+ ++K +W ++V+ +V+ C
Sbjct: 369 KPWLDIAMTQFKPLWTKHVDYELEFVQAC 283
Score = 133 bits (285), Expect = 9e-031
Identities = 69/128 (53%), Positives = 76/128 (59%)
Frame = -2 / +2
Query: 401 IASFSQGFMFPL*CTTAALSIRRSSMSTSYPRPKTCHLRSRGSIRP*NVKRPAGRVPVLQ 222
IA S GF+FPL CTTAA I M YP P+TCH S G + *NV +P G VP
Sbjct: 347 IAISSHGFIFPLKCTTAAD*ISSILMLGLYPSPRTCHDLSSGFVVE*NVIKPGGSVPNFH 526
Query: 221 SNRSEFCSCQ**YNDVAFAFLQAIKSKMFIPKAHPQVCGSILELIVGCEKFRYL*YR*ND 42
R F CQ**Y+ V F+ LQA KSK F+P A Q G LI GCEKF Y Y *ND
Sbjct: 527 KVRFSFRFCQ**YSSVHFSLLQASKSKKFMPYAQAQAFGLNFSLIKGCEKFIY*AYL*ND 706
Query: 41 SKQVSTAP 18
KQVSTAP
Sbjct: 707 PKQVSTAP 730
>gb|CV257505.1|CV257505 WS0246.B21_N16 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0246_N16 3', mRNA sequence
Length = 691
Score = 197 bits (425), Expect = 5e-050
Identities = 71/132 (53%), Positives = 92/132 (69%)
Frame = +1 / -3
Query: 70 NFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLYHYWQEQNSDLLLWRTGTLPAG 249
NFSHP I K +P C WA+GMN FDL AWR+ T YHYWQ N + LW+ GTLP G
Sbjct: 689 NFSHPLIKEKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPG 510
Query: 250 LLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHYNGNMKPWLKLAIRRYKYIWER 429
L+TFY +PLD+ WHVLGLGY+ I I+SAAVVH+NGNMKPWL +A+ ++K +W +
Sbjct: 509 LITFYSTTKPLDKSWHVLGLGYNPSISMDEIQSAAVVHFNGNMKPWLDIAMTQFKPLWTK 330
Query: 430 YVNISHPYVREC 465
+V+ +V+ C
Sbjct: 329 HVDYELEFVQAC 294
Score = 111 bits (238), Expect = 3e-024
Identities = 57/111 (51%), Positives = 64/111 (57%)
Frame = -2 / +1
Query: 401 IASFSQGFMFPL*CTTAALSIRRSSMSTSYPRPKTCHLRSRGSIRP*NVKRPAGRVPVLQ 222
IA S GF+FPL CTTAA I M YP P+TCH S G + *NV +P G VP
Sbjct: 358 IAISSHGFIFPLKCTTAAD*ISSILMLGLYPSPRTCHDLSSGFVVE*NVIKPGGSVPNFH 537
Query: 221 SNRSEFCSCQ**YNDVAFAFLQAIKSKMFIPKAHPQVCGSILELIVGCEKF 69
R F CQ**Y+ V F+ LQA KSK F+P A Q G LI GCEKF
Sbjct: 538 KVRFSFRFCQ**YSSVHFSLLQASKSKKFMPYAQAQAFGLNFSLIKGCEKF 690
>gb|CK091185.1|CK091185 F056P93.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F056P93 3', mRNA sequence
Length = 724
Score = 193 bits (415), Expect(2) = 9e-050
Identities = 71/133 (53%), Positives = 89/133 (66%)
Frame = +1 / -3
Query: 73 FSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLYHYWQEQNSDLLLWRTGTLPAGL 252
FSHP I + P C WAFGMNIFDL AWR+ T YHYWQ N D LW+ GTLP GL
Sbjct: 689 FSHPLIKERFTPKACAWAFGMNIFDLDAWRREKCTEHYHYWQSLNEDRTLWKLGTLPPGL 510
Query: 253 LTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHYNGNMKPWLKLAIRRYKYIWERY 432
+TFY + LD+ WHVLGLGY+ I I +AAV+HYNG+M PWL +A+ +YK +W +Y
Sbjct: 509 ITFYSTTKSLDKSWHVLGLGYNPSISMDEISNAAVIHYNGHMTPWLDIAMTQYKNLWTKY 330
Query: 433 VNISHPYVRECML 471
V+ +V+ C L
Sbjct: 329 VDNDMEFVQMCNL 291
Score = 102 bits (217), Expect = 2e-021
Identities = 61/136 (44%), Positives = 71/136 (52%)
Frame = -2 / +1
Query: 467 IHSLTYGCEIFTYRSHIYL*RRIASFSQGFMFPL*CTTAALSIRRSSMSTSYPRPKTCHL 288
+H T + TY +L IA S G M PL* TAAL I + YPRP TC
Sbjct: 295 LHI*TNSISLSTYLVQRFLYWVIAMSSHGVMCPL**MTAALLISSMLILGLYPRPSTCQD 474
Query: 287 RSRGSIRP*NVKRPAGRVPVLQSNRSEFCSCQ**YNDVAFAFLQAIKSKMFIPKAHPQVC 108
S + * V +P GRVP Q RS F CQ** V F+ LQA +S +FIPKA Q
Sbjct: 475 LSSDFVVE*KVIKPGGRVPNFQRVRSSFRLCQ***CSVHFSRLQASRSNIFIPKAQAQAL 654
Query: 107 GSILELIVGCEKFRYL 60
G L LI GCEK + L
Sbjct: 655 GVNLSLIKGCEKIQIL 702
Score = 24.0 bits (46), Expect(2) = 9e-050
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +1 / -2
Query: 43 SFHRYHKYLN 72
SFHRY +YLN
Sbjct: 720 SFHRYAQYLN 691
>gb|CV231822.1|CV231822 WS0195.B21_K18 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0195_K18 3', mRNA sequence
Length = 740
Score = 189 bits (407), Expect = 1e-047
Identities = 67/118 (56%), Positives = 88/118 (74%)
Frame = +1 / -3
Query: 121 WAFGMNIFDLIAWRKANATSLYHYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHV 300
WA+GMNIFDL W++ N T +YH WQ+ N D LW+ GTLP GL+TF+ PLDRRWHV
Sbjct: 738 WAYGMNIFDLKEWKRQNITDVYHTWQKLNHDRQLWKLGTLPPGLITFWKRTHPLDRRWHV 559
Query: 301 LGLGYDVDIDDRLIESAAVVHYNGNMKPWLKLAIRRYKYIWERYVNISHPYVRECMLH 474
LGLGY+ ++ R IE AAV+HYNGNMKPWL++ I +Y+ W +YV+ H Y+REC ++
Sbjct: 558 LGLGYNPNVSQREIERAAVIHYNGNMKPWLEIGIPKYRSNWAKYVDYDHAYLRECNIN 385
>gb|DT507569.1|DT507569 WS02418.BR_J21 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02418_J21 5', mRNA sequence
Length = 665
Score = 182 bits (391), Expect = 2e-045
Identities = 65/123 (52%), Positives = 86/123 (69%)
Frame = +1 / +2
Query: 97 KIDPHTCGWAFGMNIFDLIAWRKANATSLYHYWQEQNSDLLLWRTGTLPAGLLTFYGLME 276
K +P C WA+GMN FDL AWR+ T YHYWQ N + LW+ GTLP GL+TFY +
Sbjct: 5 KFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITFYSTTK 184
Query: 277 PLDRRWHVLGLGYDVDIDDRLIESAAVVHYNGNMKPWLKLAIRRYKYIWERYVNISHPYV 456
PLD+ WHVLGLGY+ I I+SAAVVH+NGNMKPWL +A+ ++K +W ++V+ +V
Sbjct: 185 PLDKSWHVLGLGYNPSISMDEIQSAAVVHFNGNMKPWLDIAMTQFKPLWTKHVDYELEFV 364
Query: 457 REC 465
+ C
Sbjct: 365 QAC 373
>gb|DT512195.1|DT512195 WS02418.B21_J21 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02418_J21 3', mRNA sequence
Length = 665
Score = 182 bits (391), Expect = 2e-045
Identities = 65/123 (52%), Positives = 86/123 (69%)
Frame = +1 / -2
Query: 97 KIDPHTCGWAFGMNIFDLIAWRKANATSLYHYWQEQNSDLLLWRTGTLPAGLLTFYGLME 276
K +P C WA+GMN FDL AWR+ T YHYWQ N + LW+ GTLP GL+TFY +
Sbjct: 661 KFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITFYSTTK 482
Query: 277 PLDRRWHVLGLGYDVDIDDRLIESAAVVHYNGNMKPWLKLAIRRYKYIWERYVNISHPYV 456
PLD+ WHVLGLGY+ I I+SAAVVH+NGNMKPWL +A+ ++K +W ++V+ +V
Sbjct: 481 PLDKSWHVLGLGYNPSISMDEIQSAAVVHFNGNMKPWLDIAMTQFKPLWTKHVDYELEFV 302
Query: 457 REC 465
+ C
Sbjct: 301 QAC 293
>gb|CV261347.1|CV261347 WS02016.B21_I14 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02016_I14 3', mRNA sequence
Length = 742
Score = 181 bits (389), Expect = 4e-045
Identities = 65/112 (58%), Positives = 81/112 (72%)
Frame = +1 / -3
Query: 136 NIFDLIAWRKANATSLYHYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGY 315
NIFDL W+K + T +YH WQ N D +LW+ GTLP GL+TFY L PL + WHVLGLGY
Sbjct: 740 NIFDLKVWKKKDITGIYHKWQNMNEDRVLWKLGTLPPGLITFYNLTHPLQKSWHVLGLGY 561
Query: 316 DVDIDDRLIESAAVVHYNGNMKPWLKLAIRRYKYIWERYVNISHPYVRECML 471
+ ID IE+AAVVHYNGNMKPWL+LA+ +Y+ W +Y+ HPY+R C L
Sbjct: 560 NPSIDRSEIENAAVVHYNGNMKPWLELAMTKYRPYWTKYIKYDHPYLRNCNL 405
>gb|DT525892.1|DT525892 WS02046.C21_J03 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02046_J03 3', mRNA sequence
Length = 743
Score = 181 bits (389), Expect = 4e-045
Identities = 65/112 (58%), Positives = 81/112 (72%)
Frame = +1 / -3
Query: 136 NIFDLIAWRKANATSLYHYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGY 315
NIFDL W+K + T +YH WQ N D +LW+ GTLP GL+TFY L PL + WHVLGLGY
Sbjct: 741 NIFDLKVWKKKDITGIYHKWQNMNEDRVLWKLGTLPPGLITFYNLTHPLQKSWHVLGLGY 562
Query: 316 DVDIDDRLIESAAVVHYNGNMKPWLKLAIRRYKYIWERYVNISHPYVRECML 471
+ ID IE+AAVVHYNGNMKPWL+LA+ +Y+ W +Y+ HPY+R C L
Sbjct: 561 NPSIDRSEIENAAVVHYNGNMKPWLELAMTKYRPYWTKYIKYDHPYLRNCNL 406
>gb|DN484940.1|DN484940 K040P50.3pR Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA clone K040P50 3', mRNA sequence
Length = 731
Score = 167 bits (359), Expect(2) = 4e-044
Identities = 60/111 (54%), Positives = 78/111 (70%)
Frame = +1 / -2
Query: 139 IFDLIAWRKANATSLYHYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYD 318
IF ++ K + T +YH WQ N D +LW+ GTLP GL+TFY L PL + WHVLGLGY+
Sbjct: 712 IFLILRCEKKDITGIYHKWQNMNEDRVLWKLGTLPPGLITFYNLTHPLQKSWHVLGLGYN 533
Query: 319 VDIDDRLIESAAVVHYNGNMKPWLKLAIRRYKYIWERYVNISHPYVRECML 471
+D IE+AAVVHYNGNMKPWL+LA+ +Y+ W +Y+ HPY+R C L
Sbjct: 532 PSVDRSEIENAAVVHYNGNMKPWLELAMTKYRPYWTKYIKYDHPYLRNCNL 380
Score = 30.9 bits (61), Expect(2) = 4e-044
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1 / -1
Query: 118 GWAFGMNIFDL 150
GWA+GMNIFDL
Sbjct: 731 GWAYGMNIFDL 699
>gb|CK088858.1|CK088858 A076P21.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A076P21 3', mRNA sequence
Length = 708
Score = 148 bits (318), Expect(2) = 7e-044
Identities = 53/103 (51%), Positives = 72/103 (69%)
Frame = +1 / -2
Query: 157 WRKANATSLYHYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDR 336
WR+ T YHYWQ N + LW+ GTLP GL+TFY +PLD+ WHVLGLGY+ I
Sbjct: 617 WRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMD 438
Query: 337 LIESAAVVHYNGNMKPWLKLAIRRYKYIWERYVNISHPYVREC 465
I+SAAVVH+NGNMKPWL +A+ ++K +W ++V+ +V+ C
Sbjct: 437 EIQSAAVVHFNGNMKPWLDIAMTQFKPLWTKHVDYELEFVQAC 309
Score = 48.7 bits (100), Expect(2) = 7e-044
Identities = 18/36 (50%), Positives = 23/36 (63%)
Frame = +1 / -3
Query: 67 LNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANA 174
+NFS P I K +P C WA+GMN FDL A + +A
Sbjct: 706 MNFSPPLIKEKFNPKACAWAYGMNFFDLDAGGERSA 599
>gb|CK318930.1|CK318930 X9P04h10 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 628
Score = 106 bits (226), Expect(2) = 4e-043
Identities = 38/86 (44%), Positives = 56/86 (65%)
Frame = +1 / +3
Query: 208 SDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHYNGNMKPW 387
SDL LW+ GTLP GL+ F+G + +D WH+LGLGY + E+A V+H+NG KPW
Sbjct: 366 SDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQENTSLADAETAGVIHFNGRAKPW 545
Query: 388 LKLAIRRYKYIWERYVNISHPYVREC 465
L +A + + +W +Y+N S ++R C
Sbjct: 546 LDIAFPQLRPLWAKYINFSDKFIRGC 623
Score = 88.1 bits (186), Expect(2) = 4e-043
Identities = 30/48 (62%), Positives = 36/48 (75%)
Frame = +1 / +3
Query: 64 YLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLYHYWQEQN 207
YLNFSHP IS P+ C WA+GMNIFDL AWRK N ++ YH+W E+N
Sbjct: 216 YLNFSHPLISENFKPNECAWAYGMNIFDLEAWRKTNISTTYHHWVEEN 359
>gb|CX660230.1|CX660230 PO01019F01 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01019F01 5', mRNA sequence
Length = 636
Score = 172 bits (370), Expect = 2e-042
Identities = 62/115 (53%), Positives = 82/115 (71%)
Frame = +1 / +3
Query: 121 WAFGMNIFDLIAWRKANATSLYHYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHV 300
WA+GMN FDL AWR+ T YHYWQ N + LW+ GTLP GL+TFY +PLD+ WHV
Sbjct: 3 WAYGMNFFDLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITFYSTTKPLDKSWHV 182
Query: 301 LGLGYDVDIDDRLIESAAVVHYNGNMKPWLKLAIRRYKYIWERYVNISHPYVREC 465
LGLGY+ I I+SAAVVH+NGNMKPWL +A+ ++K +W ++V+ +V+ C
Sbjct: 183 LGLGYNPSISMDEIQSAAVVHFNGNMKPWLDIAMTQFKPLWTKHVDYELEFVQAC 347
>gb|CN549595.1|CN549595 GQ0241.B3_D18 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0241_D18 5', mRNA sequence
Length = 689
Score = 109 bits (232), Expect(3) = 2e-042
Identities = 37/86 (43%), Positives = 56/86 (65%)
Frame = +1 / +1
Query: 208 SDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHYNGNMKPW 387
S+L +W+ GTLP L+ F G + P+D WH+LGLGY + + ++ AAV+HYNG KPW
Sbjct: 256 SNLTMWKLGTLPPSLIAFKGHVHPIDPFWHMLGLGYQNNTNIESVKKAAVIHYNGQSKPW 435
Query: 388 LKLAIRRYKYIWERYVNISHPYVREC 465
L++ + W +YVN S+ ++R C
Sbjct: 436 LEIGFEHLRPFWTKYVNYSNDFIRNC 513
Score = 81.7 bits (172), Expect(3) = 2e-042
Identities = 27/48 (56%), Positives = 32/48 (66%)
Frame = +1 / +1
Query: 64 YLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLYHYWQEQN 207
Y NFSHP I+ +DP C WA+GMNIFDL AWR N YH W ++N
Sbjct: 106 YFNFSHPLIAKNLDPDECAWAYGMNIFDLHAWRNTNIRETYHSWMKEN 249
Score = 21.7 bits (41), Expect(3) = 2e-042
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +1 / +1
Query: 4 RGNVIGAVETC 36
+G V GAVETC
Sbjct: 31 QGKVNGAVETC 63
>gb|CX654661.1|CX654661 PO02057G05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02057G05 5', mRNA sequence
Length = 368
Score = 151 bits (325), Expect = 3e-036
Identities = 55/108 (50%), Positives = 75/108 (69%)
Frame = +1 / +1
Query: 142 FDLIAWRKANATSLYHYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDV 321
FDL AWR+ T YHYWQ N + LW+ GTLP GL+ FY +PL++ WHVLGLGY+
Sbjct: 1 FDLDAWRREKCTEKYHYWQNLNENRTLWKLGTLPPGLIKFYSTTKPLNKSWHVLGLGYNP 180
Query: 322 DIDDRLIESAAVVHYNGNMKPWLKLAIRRYKYIWERYVNISHPYVREC 465
I I+SAAVVH+NGNMKPWL +A+ ++K +W ++V+ +V+ C
Sbjct: 181 SISMDEIQSAAVVHFNGNMKPWLDIAMTQFKPLWTKHVDYELEFVQAC 324
>gb|CX656255.1|CX656255 PO02051A03 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02051A03 5', mRNA sequence
Length = 297
Score = 147 bits (316), Expect = 5e-035
Identities = 56/98 (57%), Positives = 65/98 (66%)
Frame = +1 / +2
Query: 61 KYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLYHYWQEQNSDLLLWRTGTL 240
+YLNFSHP I +P C WAFGMNIFDL AWR+ T YHYWQ N D LW+ GTL
Sbjct: 2 QYLNFSHPLIKEGFNPKACAWAFGMNIFDLDAWRREKCTEHYHYWQSLNEDRTLWKLGTL 181
Query: 241 PAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAA 354
P GL+TFY + LD+ WHVLGLGY+ I I +AA
Sbjct: 182 PPGLITFYSTKKSLDKSWHVLGLGYNPSITMDEISNAA 295
>gb|CX170763.1|CX170763 G07_69-32_13.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 488
Score = 143 bits (307), Expect = 9e-034
Identities = 52/102 (50%), Positives = 71/102 (69%)
Frame = +1 / -3
Query: 160 RKANATSLYHYWQEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRL 339
R+ T YHYWQ N + LW+ GTLP GL+TFY +PLD+ WHVLGLGY+ I
Sbjct: 480 RREKCTEEYHYWQNLNENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDE 301
Query: 340 IESAAVVHYNGNMKPWLKLAIRRYKYIWERYVNISHPYVREC 465
I+SAAVVH+NGNMKPWL +A+ ++K +W ++V+ +V+ C
Sbjct: 300 IQSAAVVHFNGNMKPWLDIAMTQFKPLWTKHVDYELEFVQAC 175
>gb|CX659010.1|CX659010 PO01025C10 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01025C10 5', mRNA sequence
Length = 654
Score = 138 bits (296), Expect = 3e-032
Identities = 50/84 (59%), Positives = 58/84 (69%)
Frame = +1 / +3
Query: 7 GNVIGAVETCLESFHRYHKYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLY 186
G V GAVETC SFHRY +Y+NFSHP I K +P C WA+GMN FDL AWR+ T Y
Sbjct: 402 GKVNGAVETCFGSFHRYAQYMNFSHPLIKEKFNPKACAWAYGMNFFDLDAWRREKCTEEY 581
Query: 187 HYWQEQNSDLLLWRTGTLPAGLLT 258
HYWQ N + LW+ GTLP GL+T
Sbjct: 582 HYWQNLNENRTLWKLGTLPPGLIT 653
>gb|CK099450.1|CK099450 A068P23.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A068P23 5', mRNA sequence
Length = 579
Score = 131 bits (281), Expect = 3e-030
Identities = 48/78 (61%), Positives = 54/78 (69%)
Frame = +1 / +1
Query: 7 GNVIGAVETCLESFHRYHKYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLY 186
G V GAVETC SFHRY +YLNFSHP I + +P C WAFGMNIFDL AWR+ T Y
Sbjct: 322 GKVNGAVETCFGSFHRYAQYLNFSHPLIKERFNPKACAWAFGMNIFDLDAWRREKCTEQY 501
Query: 187 HYWQEQNSDLLLWRTGTL 240
HYWQ N + LW+ GTL
Sbjct: 502 HYWQSLNEERTLWKLGTL 555
>gb|CV235910.1|CV235910 WS01222.B21_B08 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01222_B08 3', mRNA sequence
Length = 437
Score = 84.9 bits (179), Expect(2) = 6e-030
Identities = 28/52 (53%), Positives = 41/52 (78%)
Frame = +1 / -2
Query: 322 DIDDRLIESAAVVHYNGNMKPWLKLAIRRYKYIWERYVNISHPYVRECMLH* 477
++D LIE AV+H+NGN KPWLK+ + +YK +WE+YV+ SHP +++C LH*
Sbjct: 340 NVDPHLIEKGAVLHFNGNSKPWLKIGMEKYKSLWEKYVDYSHPLLQQCNLH* 185
Score = 65.7 bits (137), Expect(2) = 6e-030
Identities = 24/31 (77%), Positives = 25/31 (80%)
Frame = +1 / -2
Query: 223 WRTGTLPAGLLTFYGLMEPLDRRWHVLGLGY 315
W+ GTLP GLLTFYGL EPLD WHVLG GY
Sbjct: 436 WKLGTLPPGLLTFYGLTEPLDPSWHVLGWGY 344
>gb|CK102216.1|CK102216 G069P39.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G069P39 5', mRNA sequence
Length = 568
Score = 88.1 bits (186), Expect(2) = 3e-029
Identities = 30/48 (62%), Positives = 36/48 (75%)
Frame = +1 / +3
Query: 64 YLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLYHYWQEQN 207
YLNFSHP IS P+ C WA+GMNIFDL AWRK N ++ YH+W E+N
Sbjct: 264 YLNFSHPLISENFKPNECAWAYGMNIFDLEAWRKTNISTTYHHWVEEN 407
Score = 60.2 bits (125), Expect(2) = 3e-029
Identities = 24/51 (47%), Positives = 33/51 (64%)
Frame = +1 / +3
Query: 208 SDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVV 360
SDL LW+ GTLP GL+ F+G + +D WH+LGLGY + E+A V+
Sbjct: 414 SDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQENTSLADAETAGVI 566
>gb|BU824298.1|BU824298 UB62BPE10 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 429
Score = 121 bits (259), Expect(2) = 2e-028
Identities = 44/82 (53%), Positives = 59/82 (71%)
Frame = +1 / +3
Query: 220 LWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHYNGNMKPWLKLA 399
LW+ GTLP GL+TFY + LD+ WHVLGLGY+ I I +AAV+HYNGNMKPWL +A
Sbjct: 57 LWKLGTLPPGLITFYSTTKSLDKSWHVLGLGYNPSISMDEISNAAVIHYNGNMKPWLDIA 236
Query: 400 IRRYKYIWERYVNISHPYVREC 465
+ +YK +W +YV+ +V+ C
Sbjct: 237 MNQYKNLWTKYVDNDMEFVQTC 302
Score = 23.5 bits (45), Expect(2) = 2e-028
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +1 / +1
Query: 184 YHYWQEQNSDLL 219
YHYWQ N + L
Sbjct: 22 YHYWQSLNEEPL 57
>gb|BI127787.1|BI127787 G066P03Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 497
Score = 124 bits (266), Expect = 4e-028
Identities = 46/90 (51%), Positives = 64/90 (71%)
Frame = +1 / +3
Query: 196 QEQNSDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHYNGN 375
Q N + LW+ GTLP GL+TFY +PLD+ WHVLGLGY+ I I+SAAVVH+NGN
Sbjct: 3 QNLNENRTLWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIQSAAVVHFNGN 182
Query: 376 MKPWLKLAIRRYKYIWERYVNISHPYVREC 465
MKPWL +A+ ++K +W ++V+ +V+ C
Sbjct: 183 MKPWLDIAMTQFKPLWTKHVDYELEFVQAC 272
>gb|BU868361.1|BU868361 M115A04 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 490
Score = 121 bits (259), Expect = 4e-027
Identities = 44/82 (53%), Positives = 61/82 (74%)
Frame = +1 / +2
Query: 220 LWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHYNGNMKPWLKLA 399
LW+ GTLP GL+TFY +PLD+ WHVLGLGY+ I I+SAAVVH+NGNMKPWL +A
Sbjct: 11 LWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIQSAAVVHFNGNMKPWLDIA 190
Query: 400 IRRYKYIWERYVNISHPYVREC 465
+ ++K +W ++V+ +V+ C
Sbjct: 191 MTQFKPLWTKHVDYELEFVQAC 256
>gb|CX659267.1|CX659267 PO01028E05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01028E05 5', mRNA sequence
Length = 623
Score = 121 bits (259), Expect = 4e-027
Identities = 43/74 (58%), Positives = 50/74 (67%)
Frame = +1 / +3
Query: 7 GNVIGAVETCLESFHRYHKYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLY 186
G V GAVETC SFHRY +Y+NFSHP I K +P C WA+GMN FDL AWR+ T Y
Sbjct: 402 GKVNGAVETCFGSFHRYAQYMNFSHPLIKEKFNPKACAWAYGMNFFDLDAWRREKCTEEY 581
Query: 187 HYWQEQNSDLLLWR 228
HYWQ N + LW+
Sbjct: 582 HYWQNLNENRTLWK 623
>gb|CK106989.1|CK106989 UB42BPD03.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB42BPD03 5', mRNA sequence
Length = 319
Score = 115 bits (245), Expect = 3e-025
Identities = 41/69 (59%), Positives = 47/69 (68%)
Frame = +1 / +2
Query: 7 GNVIGAVETCLESFHRYHKYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLY 186
G V GAVETC SFHRY +Y+NFSHP I K +P C WA+GMN FDL AWR+ T Y
Sbjct: 53 GKVNGAVETCFGSFHRYAQYMNFSHPLIKEKFNPKACAWAYGMNFFDLDAWRREKCTEEY 232
Query: 187 HYWQEQNSD 213
HYWQ N +
Sbjct: 233 HYWQNLNEN 259
>gb|BI127989.1|BI127989 G069P39Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 505
Score = 88.1 bits (186), Expect(2) = 9e-025
Identities = 30/48 (62%), Positives = 36/48 (75%)
Frame = +1 / +3
Query: 64 YLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLYHYWQEQN 207
YLNFSHP IS P+ C WA+GMNIFDL AWRK N ++ YH+W E+N
Sbjct: 264 YLNFSHPLISENFKPNECAWAYGMNIFDLEAWRKTNISTTYHHWVEEN 407
Score = 45.1 bits (92), Expect(2) = 9e-025
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +1 / +3
Query: 208 SDLLLWRTGTLPAGLLTFYGLMEPLDRRWH 297
SDL LW+ GTLP GL+ F+G + +D WH
Sbjct: 414 SDLSLWQLGTLPPGLIAFHGHVHVIDPFWH 503
>gb|BU837261.1|BU837261 T096G03 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 632
Score = 83.5 bits (176), Expect(3) = 4e-024
Identities = 28/51 (54%), Positives = 33/51 (64%)
Frame = +1 / +2
Query: 55 YHKYLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLYHYWQEQN 207
+ Y NFSHP I +DP C WA+GMNIFDL AWRK N YH W ++N
Sbjct: 383 FKNYFNFSHPLIEKNLDPDECAWAYGMNIFDLRAWRKTNIRETYHSWLKEN 535
Score = 42.8 bits (87), Expect(3) = 4e-024
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1 / +2
Query: 208 SDLLLWRTGTLPAGLLTFYGLMEPLDRRWH 297
S+L +W+ GTLP L+ F G + P+D WH
Sbjct: 542 SNLTMWKLGTLPPALIAFKGHVHPIDPYWH 631
Score = 22.1 bits (42), Expect(3) = 4e-024
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +1 / +2
Query: 4 RGNVIGAVETC 36
+G V GAVETC
Sbjct: 317 KGKVNGAVETC 349
>gb|BU812059.1|BU812059 UL91TG07 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 611
Score = 88.1 bits (186), Expect(2) = 7e-023
Identities = 30/48 (62%), Positives = 36/48 (75%)
Frame = +1 / +2
Query: 64 YLNFSHPTISSKIDPHTCGWAFGMNIFDLIAWRKANATSLYHYWQEQN 207
YLNFSHP IS P+ C WA+GMNIFDL AWRK N ++ YH+W E+N
Sbjct: 380 YLNFSHPLISENFKPNECAWAYGMNIFDLEAWRKTNISTTYHHWVEEN 523
Score = 38.6 bits (78), Expect(2) = 7e-023
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +1 / +2
Query: 208 SDLLLWRTGTLPAGLLTFYGLMEPLD 285
SDL LW+ GTLP GL+ F+G + +D
Sbjct: 530 SDLSLWQLGTLPPGLIAFHGHVHVID 607
>gb|BP936699.1|BP936699 BP936699 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-095_F13.r 3', mRNA sequence
Length = 641
Score = 99.6 bits (211), Expect(2) = 3e-022
Identities = 36/86 (41%), Positives = 54/86 (62%)
Frame = +1 / -1
Query: 208 SDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHYNGNMKPW 387
S L LW+ GTLP GL+ F+G + +D WH+LGLGY + E+A V+H+NG KPW
Sbjct: 575 SGLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQENTSLADAETAGVIHFNGRAKPW 396
Query: 388 LKLAIRRYKYIWERYVNISHPYVREC 465
L +A + + +W +Y+N S ++ C
Sbjct: 395 LDIAFPQLRPLWAKYINSSDKFITGC 318
Score = 24.9 bits (48), Expect(2) = 3e-022
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +1 / -1
Query: 157 WRKANATSLYHYWQEQN 207
WRK + + H+W E+N
Sbjct: 632 WRKTDISITDHHWVEEN 582
>gb|CV231091.1|CV231091 WS0193.B21_I08 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0193_I08 3', mRNA sequence
Length = 557
Score = 105 bits (223), Expect = 3e-022
Identities = 37/86 (43%), Positives = 56/86 (65%)
Frame = +1 / +2
Query: 208 SDLLLWRTGTLPAGLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHYNGNMKPW 387
SDL LW+ GTLP GL+ F+G + +D WH+LGLGY + E+A V+H+NG KPW
Sbjct: 29 SDLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQENTSLADAETAGVIHFNGRAKPW 208
Query: 388 LKLAIRRYKYIWERYVNISHPYVREC 465
L +A + + +W +Y+N S +++ C
Sbjct: 209 LDIAFPQLRPLWAKYINFSDKFIKGC 286
>gb|CV231376.1|CV231376 WS0194.B21_F18 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0194_F18 3', mRNA sequence
Length = 531
Score = 104 bits (222), Expect = 5e-022
Identities = 38/73 (52%), Positives = 54/73 (73%)
Frame = +1 / -3
Query: 247 GLLTFYGLMEPLDRRWHVLGLGYDVDIDDRLIESAAVVHYNGNMKPWLKLAIRRYKYIWE 426
GL+TFY +PLD+ WHVLGLGY+ I I+SAAVVH+NGNMKPWL +A+ ++K +W
Sbjct: 526 GLITFYSTTKPLDKSWHVLGLGYNPSISMDEIQSAAVVHFNGNMKPWLDIAMTQFKPLWT 347
Query: 427 RYVNISHPYVREC 465
++V+ +V+ C
Sbjct: 346 KHVDYELEFVQAC 308
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 336,513,699
Number of Sequences: 369679
Number of extensions: 4952467
Number of successful extensions: 57543
Number of sequences better than 1.0e-020: 45
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 7244490332
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)