TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3191640.2.1
(923 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT512918.1|DT512918 WS02420.B21_J19 PTxD-ICC-N-A-14 Popu... 152 2e-055
gb|BU888780.1|BU888780 P012D09 Populus petioles cDNA librar... 138 3e-050
gb|DN495824.1|DN495824 P012D09.5pR Populus petioles cDNA li... 133 8e-048
gb|DN486268.1|DN486268 P012D09.3pR Populus petioles cDNA li... 99 2e-038
gb|CK318807.1|CK318807 X9P03f01 Populus stem seasonal libra... 100 9e-038
gb|CX660092.1|CX660092 PO01017H09 Poplar SC cDNA library Po... 127 4e-037
gb|DT506767.1|DT506767 WS02416.BR_H10 PTxD-ICC-N-A-14 Popul... 128 1e-036
gb|CV243754.1|CV243754 WS0252.B21_M05 PT-MB-N-A-15 Populus ... 82 8e-034
gb|DT511436.1|DT511436 WS02416.B21_H10 PTxD-ICC-N-A-14 Popu... 114 2e-032
gb|DT508304.1|DT508304 WS02420.BR_J19 PTxD-ICC-N-A-14 Popul... 137 1e-031
gb|CV245455.1|CV245455 WS0257.B21_H13 PT-MB-N-A-15 Populus ... 108 2e-031
gb|CA929934.1|CA929934 MTU2CA.P4.G01 Aspen apex cDNA Librar... 134 9e-031
gb|CA929518.1|CA929518 MTU2CA.P14.H10 Aspen apex cDNA Libra... 131 8e-030
gb|CA930266.1|CA930266 MTU2CA.P9.D06 Aspen apex cDNA Librar... 129 3e-029
gb|CX658908.1|CX658908 PO01023H02 Poplar SC cDNA library Po... 127 7e-029
gb|CX659600.1|CX659600 PO01032F08 Poplar SC cDNA library Po... 127 7e-029
gb|AC149299.1| Populus trichocarpa clone Pop1-037B22, compl... 59 1e-028
gb|CA926727.1|CA926727 MTU6CR.P18.E02 Aspen root cDNA Libra... 123 1e-027
gb|CA927124.1|CA927124 MTU6CR.P5.C04 Aspen root cDNA Librar... 120 1e-026
gb|CX660397.1|CX660397 PO01032C08 Poplar SC cDNA library Po... 120 2e-026
gb|CV253324.1|CV253324 WS0221.B21_J07 PTxD-ICC-A-12 Populus... 56 3e-026
gb|DT516784.1|DT516784 WS02432.B21_G08 PTxD-ICC-N-A-14 Popu... 89 6e-025
>gb|DT512918.1|DT512918 WS02420.B21_J19 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02420_J19 3', mRNA sequence
Length = 891
Score = 152 bits (327), Expect(4) = 2e-055
Identities = 61/127 (48%), Positives = 84/127 (66%)
Frame = +1 / -1
Query: 1 HETNGTISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNS 180
+ N I+G+ LNS+ FHI I+ +++ V+ V ++A D NTDG+HV S+ V I NS
Sbjct: 819 NSNNIAITGLASLNSQMFHIVINACQNVKVQGVRVSAAGDSPNTDGIHVQSSTGVTILNS 640
Query: 181 TIGTGDDCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTN 360
IGTGDDCVSIGPG+ + + N+ CGPG GIS+G LG+ E V +VTV+ T N
Sbjct: 639 RIGTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDSQEAGVQNVTVKTTTFTGTEN 460
Query: 361 GVRIKSY 381
GVRIK++
Sbjct: 459 GVRIKTW 439
Score = 56.1 bits (116), Expect(4) = 2e-055
Identities = 23/45 (51%), Positives = 31/45 (68%)
Frame = +1 / -1
Query: 517 SHVSIKDVTFRNISGTSSTPEAVSLLCSETQPCSGVSLIDVNVEY 651
S V I DVT+++I G+S+T AV CS+T PCSG+ L DV + Y
Sbjct: 312 SGVKISDVTYQDIHGSSATELAVKFDCSKTNPCSGIKLEDVKLTY 178
Score = 34.5 bits (69), Expect(4) = 2e-055
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1 / -1
Query: 406 ASHLTFENIRMEEVANPIIIDQYFCP 483
A ++ F++ M V NPI+IDQ +CP
Sbjct: 417 ARNILFQHAVMTNVQNPIVIDQNYCP 340
Score = 29.9 bits (59), Expect(4) = 2e-055
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1 / -1
Query: 640 NVEYAGKNNKTMAVCSNAKGTAKGSLQALDCL 735
+V+ N A CSNA G A G +Q CL
Sbjct: 195 DVKLTYNNQPAEASCSNAGGVASGVVQPTSCL 100
>gb|BU888780.1|BU888780 P012D09 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 728
Score = 138 bits (296), Expect(3) = 3e-050
Identities = 53/119 (44%), Positives = 79/119 (66%)
Frame = +1 / +3
Query: 28 IKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTIGTGDDCV 207
+K+ N++ H++ S + V ++ +T+P + NTDG+H+ + N++IT+S IGTGDDC+
Sbjct: 3 LKIQNAQQMHVSFKKSNHVLVSNLTVTSPEESPNTDGIHITKTQNIQITDSVIGTGDDCI 182
Query: 208 SIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRIKSYE 384
SI GS V ITCGPG GIS+G LG + + VS+VTV L T NGVRIK+++
Sbjct: 183 SIVSGSHNVQAKGITCGPGHGISIGSLGVHDSKDHVSEVTVNGAKLSGTANGVRIKTWQ 359
Score = 56.1 bits (116), Expect(3) = 3e-050
Identities = 21/51 (41%), Positives = 33/51 (64%)
Frame = +1 / +3
Query: 505 RSNSSHVSIKDVTFRNISGTSSTPEAVSLLCSETQPCSGVSLIDVNVEYAG 657
R S + +K+V ++NI GTS++ A+ CS+ PC G+ L D+N+E AG
Sbjct: 468 RQQKSALQVKNVVYKNIKGTSASEVAMRFDCSKAYPCQGILLQDINLERAG 620
Score = 43.2 bits (88), Expect(3) = 3e-050
Identities = 16/26 (61%), Positives = 21/26 (80%)
Frame = +1 / +3
Query: 409 SHLTFENIRMEEVANPIIIDQYFCPQ 486
S++ F+NI M +VANPIIIDQ +C Q
Sbjct: 378 SNIKFQNIEMNKVANPIIIDQNYCDQ 455
>gb|DN495824.1|DN495824 P012D09.5pR Populus petioles cDNA library Populus tremula cDNA
clone P012D09 5', mRNA sequence
Length = 820
Score = 133 bits (286), Expect(3) = 8e-048
Identities = 52/119 (43%), Positives = 78/119 (65%)
Frame = +1 / +2
Query: 28 IKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTIGTGDDCV 207
+K+ N++ H++ S + V ++ +T+P + NTDG+H+ + N++IT+S IGTGDDC+
Sbjct: 5 LKIQNAQQMHVSFKKSNHVLVSNLTVTSPEESPNTDGIHITKTQNIQITDSVIGTGDDCI 184
Query: 208 SIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRIKSYE 384
SI GS V ITCGPG GIS+G L + + VS+VTV L T NGVRIK+++
Sbjct: 185 SIVSGSHNVQAKGITCGPGHGISIGSL*VHDSKDHVSEVTVNGAKLSGTANGVRIKTWQ 361
Score = 52.4 bits (108), Expect(3) = 8e-048
Identities = 20/51 (39%), Positives = 32/51 (62%)
Frame = +1 / +2
Query: 505 RSNSSHVSIKDVTFRNISGTSSTPEAVSLLCSETQPCSGVSLIDVNVEYAG 657
R S + +K+V ++NI GTS++ A+ CS+ PC + L D+N+E AG
Sbjct: 470 RQQKSALQVKNVVYKNIKGTSASEVAMRFDCSKAYPCQRILLQDINLERAG 622
Score = 43.2 bits (88), Expect(3) = 8e-048
Identities = 16/26 (61%), Positives = 21/26 (80%)
Frame = +1 / +2
Query: 409 SHLTFENIRMEEVANPIIIDQYFCPQ 486
S++ F+NI M +VANPIIIDQ +C Q
Sbjct: 380 SNIKFQNIEMNKVANPIIIDQNYCDQ 457
>gb|DN486268.1|DN486268 P012D09.3pR Populus petioles cDNA library Populus tremula cDNA
clone P012D09 3', mRNA sequence
Length = 768
Score = 98.7 bits (209), Expect(3) = 2e-038
Identities = 40/74 (54%), Positives = 51/74 (68%)
Frame = +1 / -2
Query: 163 VRITNSTIGTGDDCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCV 342
++IT+S IGTGDDC+SI GS V ITCGPG GIS+G LG + + VS+VTV
Sbjct: 767 IQITDSVIGTGDDCISIVSGSHNVQAKGITCGPGHGISIGSLGVHDSKDHVSEVTVNGAK 588
Query: 343 LRNTTNGVRIKSYE 384
L T NGVRIK+++
Sbjct: 587 LSGTANGVRIKTWQ 546
Score = 56.1 bits (116), Expect(3) = 2e-038
Identities = 21/51 (41%), Positives = 33/51 (64%)
Frame = +1 / -2
Query: 505 RSNSSHVSIKDVTFRNISGTSSTPEAVSLLCSETQPCSGVSLIDVNVEYAG 657
R S + +K+V ++NI GTS++ A+ CS+ PC G+ L D+N+E AG
Sbjct: 437 RQQKSALQVKNVVYKNIKGTSASEVAMRFDCSKAYPCQGILLQDINLERAG 285
Score = 43.2 bits (88), Expect(3) = 2e-038
Identities = 16/26 (61%), Positives = 21/26 (80%)
Frame = +1 / -2
Query: 409 SHLTFENIRMEEVANPIIIDQYFCPQ 486
S++ F+NI M +VANPIIIDQ +C Q
Sbjct: 527 SNIKFQNIEMNKVANPIIIDQNYCDQ 450
>gb|CK318807.1|CK318807 X9P03f01 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 736
Score = 100 bits (212), Expect(3) = 9e-038
Identities = 41/77 (53%), Positives = 52/77 (67%)
Frame = +1 / +2
Query: 154 SSNVRITNSTIGTGDDCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVR 333
+ N++IT+S IGTGDDC+SI GS V ITCGPG GIS+G LG + + VS VTV
Sbjct: 14 TQNIQITDSVIGTGDDCISIVSGSHHVQATGITCGPGHGISIGSLGAHDSKDHVSGVTVS 193
Query: 334 DCVLRNTTNGVRIKSYE 384
L T NGVRIK+++
Sbjct: 194 GAKLSGTANGVRIKTWQ 244
Score = 54.2 bits (112), Expect(3) = 9e-038
Identities = 20/51 (39%), Positives = 33/51 (64%)
Frame = +1 / +2
Query: 505 RSNSSHVSIKDVTFRNISGTSSTPEAVSLLCSETQPCSGVSLIDVNVEYAG 657
+ S + +K+V ++NI GTS++ A+ CS+ PC G+ L D+N+E AG
Sbjct: 353 KQQKSALQVKNVMYKNIKGTSASEVAMRFDCSKAYPCQGILLQDINLERAG 505
Score = 41.4 bits (84), Expect(3) = 9e-038
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +1 / +2
Query: 409 SHLTFENIRMEEVANPIIIDQYFCPQ 486
S++ F+NI M +V NPIIIDQ +C Q
Sbjct: 263 SNIKFQNIEMNKVTNPIIIDQNYCDQ 340
>gb|CX660092.1|CX660092 PO01017H09 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01017H09 5', mRNA sequence
Length = 705
Score = 127 bits (273), Expect(3) = 4e-037
Identities = 54/126 (42%), Positives = 76/126 (60%)
Frame = +1 / +3
Query: 7 TNGTISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTI 186
T ++GI + NS H+ D + V D +P + NTDG+H+ S +V I +S +
Sbjct: 72 TRVIVTGITIQNSPQTHLKFDGCTTVQVSDFRAASPENSPNTDGIHLENSHDVLIYSSDL 251
Query: 187 GTGDDCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGV 366
GDDCVSI G V ++N+ CGPG GIS+G LGR + VS+VTVRD + NT GV
Sbjct: 252 ACGDDCVSIQTGCSQVYIHNVNCGPGHGISIGGLGRDNSKACVSNVTVRDVAMLNTLTGV 431
Query: 367 RIKSYE 384
RIK+++
Sbjct: 432 RIKTWQ 449
Score = 40.0 bits (81), Expect(3) = 4e-037
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +1 / +3
Query: 415 LTFENIRMEEVANPIIIDQYFCPQKVCPGKRS 510
+TF NI++ V PI+IDQ++C + C K S
Sbjct: 474 VTFSNIQVSGVKTPIMIDQFYCDRSKCQNKSS 569
Score = 25.4 bits (49), Expect(3) = 4e-037
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1 / +3
Query: 583 VSLLCSETQPCSGVS 627
V L CS+ PC+G+S
Sbjct: 630 VHLACSDNLPCTGIS 674
>gb|DT506767.1|DT506767 WS02416.BR_H10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02416_H10 5', mRNA sequence
Length = 802
Score = 128 bits (274), Expect(3) = 1e-036
Identities = 54/126 (42%), Positives = 76/126 (60%)
Frame = +1 / +3
Query: 7 TNGTISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTI 186
T ++GI + NS H+ D + V D +P + NTDG+H+ S +V I +S +
Sbjct: 15 TRVIVTGITIQNSPQTHLKFDDCTTVQVSDFKAASPENSPNTDGIHLENSHDVLIYSSDL 194
Query: 187 GTGDDCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGV 366
GDDCVSI G V ++N+ CGPG GIS+G LGR + VS+VTVRD + NT GV
Sbjct: 195 ACGDDCVSIQTGCSQVYIHNVNCGPGHGISIGGLGRDNSKACVSNVTVRDVAMLNTLTGV 374
Query: 367 RIKSYE 384
RIK+++
Sbjct: 375 RIKTWQ 392
Score = 38.2 bits (77), Expect(3) = 1e-036
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1 / +3
Query: 415 LTFENIRMEEVANPIIIDQYFCPQKVCPGKRS 510
+TF NI++ V PI+IDQ++C + C + S
Sbjct: 417 VTFSNIQVSGVKTPIMIDQFYCDRSKCQNESS 512
Score = 24.9 bits (48), Expect(3) = 1e-036
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1 / +3
Query: 583 VSLLCSETQPCSGVS 627
V L CS+ PC+G+S
Sbjct: 573 VHLACSDDLPCTGIS 617
>gb|CV243754.1|CV243754 WS0252.B21_M05 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0252_M05 3', mRNA sequence
Length = 928
Score = 81.7 bits (172), Expect(3) = 8e-034
Identities = 33/65 (50%), Positives = 41/65 (63%)
Frame = +1 / -3
Query: 190 TGDDCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVR 369
TGDDC+SI S + + NI CGPG GIS+G LG+ V DV V L NT NGVR
Sbjct: 926 TGDDCISIVSNSSRIKIRNIACGPGHGISIGSLGKSNSSSLVRDVMVDGAFLSNTDNGVR 747
Query: 370 IKSYE 384
IK+++
Sbjct: 746 IKTWQ 732
Score = 52.4 bits (108), Expect(3) = 8e-034
Identities = 19/46 (41%), Positives = 31/46 (67%)
Frame = +1 / -3
Query: 508 SNSSHVSIKDVTFRNISGTSSTPEAVSLLCSETQPCSGVSLIDVNV 645
+ +S V +++++FR I GTS+T EA+ CS+ PC G+ L DV +
Sbjct: 620 NQTSAVKVENISFRRIKGTSATEEAIKFACSDDLPCKGLYLEDVQL 483
Score = 48.3 bits (99), Expect(3) = 8e-034
Identities = 18/29 (62%), Positives = 24/29 (82%)
Frame = +1 / -3
Query: 406 ASHLTFENIRMEEVANPIIIDQYFCPQKV 492
A+++TF+NI ME V+NPIIIDQY+C V
Sbjct: 716 ATNITFQNIFMENVSNPIIIDQYYCDAHV 630
>gb|DT511436.1|DT511436 WS02416.B21_H10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02416_H10 3', mRNA sequence
Length = 934
Score = 114 bits (244), Expect(3) = 2e-032
Identities = 47/101 (46%), Positives = 65/101 (64%)
Frame = +1 / -2
Query: 82 ITVKDVNITAPADVENTDGVHVGGSSNVRITNSTIGTGDDCVSIGPGSDGVMVNNITCGP 261
+ V D +P + NTDG+H+ S +V I +S + GDDCVSI G V ++N+ CGP
Sbjct: 921 VQVSDFKAASPENSPNTDGIHLENSHDVLIYSSDLACGDDCVSIQTGCSQVYIHNVNCGP 742
Query: 262 GQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRIKSYE 384
G GIS+G LGR + VS+VTVRD + NT GVRIK+++
Sbjct: 741 GHGISIGGLGRDNSKACVSNVTVRDVAMLNTLTGVRIKTWQ 619
Score = 38.2 bits (77), Expect(3) = 2e-032
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1 / -2
Query: 415 LTFENIRMEEVANPIIIDQYFCPQKVCPGKRS 510
+TF NI++ V PI+IDQ++C + C + S
Sbjct: 594 VTFSNIQVSGVKTPIMIDQFYCDRSKCQNESS 499
Score = 24.9 bits (48), Expect(3) = 2e-032
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1 / -2
Query: 583 VSLLCSETQPCSGVS 627
V L CS+ PC+G+S
Sbjct: 438 VHLACSDDLPCTGIS 394
>gb|DT508304.1|DT508304 WS02420.BR_J19 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02420_J19 5', mRNA sequence
Length = 886
Score = 137 bits (293), Expect = 1e-031
Identities = 54/111 (48%), Positives = 75/111 (67%)
Frame = +1 / +3
Query: 1 HETNGTISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNS 180
+ N I+G+ LNS+ FHI I+ +++ V+ V ++A D NTDG+HV S+ V I NS
Sbjct: 534 NSNNIAITGLASLNSQMFHIVINACQNVKVQGVRVSAAGDSPNTDGIHVQSSTGVTILNS 713
Query: 181 TIGTGDDCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVR 333
IGTGDDCVSIGPG+ + + N+ CGPG GIS+G LG+ E V +VTV+
Sbjct: 714 RIGTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLGKDSQEAGVQNVTVK 866
>gb|CV245455.1|CV245455 WS0257.B21_H13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0257_H13 3', mRNA sequence
Length = 937
Score = 108 bits (230), Expect(2) = 2e-031
Identities = 40/99 (40%), Positives = 68/99 (68%)
Frame = +1 / -2
Query: 88 VKDVNITAPADVENTDGVHVGGSSNVRITNSTIGTGDDCVSIGPGSDGVMVNNITCGPGQ 267
+K ++I++P NTDG+H+ + V I +S I GDDC+SIG G V ++ +TCGP
Sbjct: 933 IKKLSISSPKLSPNTDGIHIENTKAVGIYDSFISNGDDCISIGTGCSNVDIDGLTCGPSH 754
Query: 268 GISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRIKSYE 384
GIS+G LG + + VS++TVR+ +++ + +G+RIK+++
Sbjct: 753 GISIGSLGVHNSQACVSNITVRNTIIKESDDGLRIKTWQ 637
Score = 48.3 bits (99), Expect(2) = 2e-031
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = +1 / -2
Query: 409 SHLTFENIRMEEVANPIIIDQYFCPQKVCPGKRS 510
S + FENI+ME V N IIIDQY+C K C + S
Sbjct: 618 SDINFENIQMENVRNCIIIDQYYCLSKACQNETS 517
>gb|CA929934.1|CA929934 MTU2CA.P4.G01 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 644
Score = 134 bits (287), Expect = 9e-031
Identities = 56/122 (45%), Positives = 79/122 (64%)
Frame = +1 / -1
Query: 19 ISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTIGTGD 198
I+G+ + NS+ H I S + V DV ++AP D NTDG+H+ GS+NV + + IGTGD
Sbjct: 389 INGLTIQNSQQMHFVISHSDSVRVSDVLVSAPEDSPNTDGIHITGSTNVVLQDCKIGTGD 210
Query: 199 DCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRIKS 378
DCVSI GS + + I CGPG+GIS+G LG+ V+ V + LR TTNG+RIK+
Sbjct: 209 DCVSIVNGSSNIKMKRIFCGPGRGISIGSLGKDNSTGMVTKVVLDTAFLRETTNGLRIKT 30
Query: 379 YE 384
++
Sbjct: 29 WQ 24
>gb|CA929518.1|CA929518 MTU2CA.P14.H10 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 527
Score = 131 bits (280), Expect = 8e-030
Identities = 55/122 (45%), Positives = 78/122 (63%)
Frame = +1 / -1
Query: 19 ISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTIGTGD 198
I+G+ + NS+ H I S + V V ++AP D NTDG+H+ GS+NV + + IGTGD
Sbjct: 389 INGLTIQNSQQMHFVISHSDSVRVSHVLVSAPEDSPNTDGIHITGSTNVVLQDCKIGTGD 210
Query: 199 DCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRIKS 378
DCVSI GS + + I CGPG+GIS+G LG+ V+ V + LR TTNG+RIK+
Sbjct: 209 DCVSIVNGSSNIKMKRIFCGPGRGISIGSLGKDNSTGMVTKVVLDTAFLRETTNGLRIKT 30
Query: 379 YE 384
++
Sbjct: 29 WQ 24
>gb|CA930266.1|CA930266 MTU2CA.P9.D06 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 579
Score = 129 bits (276), Expect = 3e-029
Identities = 55/122 (45%), Positives = 78/122 (63%)
Frame = +1 / -2
Query: 19 ISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTIGTGD 198
I+G+ + NS+ H I S + V DV ++AP D NTDG+H+ GS+NV + + IGTGD
Sbjct: 389 INGLTIQNSQQMHFVISHSDSVRVSDVLVSAPEDSPNTDGIHITGSTNVVLQDCKIGTGD 210
Query: 199 DCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRIKS 378
DCVSI GS + + I GPG+GIS+G LG+ V+ V + LR TTNG+RIK+
Sbjct: 209 DCVSIVNGSSNIKMKRIFYGPGRGISIGSLGKDNSTGMVTKVVLDTAFLRETTNGLRIKT 30
Query: 379 YE 384
++
Sbjct: 29 WQ 24
>gb|CX658908.1|CX658908 PO01023H02 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01023H02 5', mRNA sequence
Length = 611
Score = 127 bits (273), Expect = 7e-029
Identities = 54/126 (42%), Positives = 76/126 (60%)
Frame = +1 / +2
Query: 7 TNGTISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTI 186
T ++GI + NS H+ D + V D +P + NTDG+H+ S +V I +S +
Sbjct: 158 TRVIVTGITIQNSPQTHLKFDGCTTVQVSDFRAASPENSPNTDGIHLENSHDVLIYSSDL 337
Query: 187 GTGDDCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGV 366
GDDCVSI G V ++N+ CGPG GIS+G LGR + VS+VTVRD + NT GV
Sbjct: 338 ACGDDCVSIQTGCSQVYIHNVNCGPGHGISIGGLGRDNSKACVSNVTVRDVAMLNTLTGV 517
Query: 367 RIKSYE 384
RIK+++
Sbjct: 518 RIKTWQ 535
>gb|CX659600.1|CX659600 PO01032F08 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01032F08 5', mRNA sequence
Length = 696
Score = 127 bits (273), Expect = 7e-029
Identities = 54/126 (42%), Positives = 76/126 (60%)
Frame = +1 / +3
Query: 7 TNGTISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTI 186
T ++GI + NS H+ D + V D +P + NTDG+H+ S +V I +S +
Sbjct: 270 TRVIVTGITIQNSPQTHLKFDGCTTVQVSDFRAASPENSPNTDGIHLENSHDVLIYSSDL 449
Query: 187 GTGDDCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGV 366
GDDCVSI G V ++N+ CGPG GIS+G LGR + VS+VTVRD + NT GV
Sbjct: 450 ACGDDCVSIQTGCSQVYIHNVNCGPGHGISIGGLGRDNSKACVSNVTVRDVAMLNTLTGV 629
Query: 367 RIKSYE 384
RIK+++
Sbjct: 630 RIKTWQ 647
>gb|AC149299.1| Populus trichocarpa clone Pop1-037B22, complete sequence
Length = 143392
Score = 59.3 bits (123), Expect(5) = 1e-028
Identities = 22/59 (37%), Positives = 36/59 (61%)
Frame = +1 / +2
Query: 19 ISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTIGTG 195
+ G+ + NS+ H I S + + V+++AP D NTDG+H+ S+NV + + IGTG
Sbjct: 98702 VKGLTIKNSQQMHFVISKSASVRISQVSVSAPGDSPNTDGIHITQSTNVVLQDCKIGTG 98878
Score = 52.8 bits (109), Expect(5) = 1e-028
Identities = 19/45 (42%), Positives = 33/45 (73%)
Frame = +1 / +2
Query: 514 SSHVSIKDVTFRNISGTSSTPEAVSLLCSETQPCSGVSLIDVNVE 648
+S V I ++ +RNISGT+ + +A++ CS++ PCS + L +VN+E
Sbjct: 99758 TSAVKISEIMYRNISGTTKSEKAMTFACSDSVPCSNIVLSNVNLE 99892
Score = 45.5 bits (93), Expect(5) = 1e-028
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +1 / +2
Query: 190 TGDDCVSIGPGSDGVMVNNITCGPGQGISVGCL 288
+GDDC+SI GS G+ + I CGPG G+ + +
Sbjct: 99011 SGDDCISIVNGSSGIKMKRIYCGPGHGVRLSSI 99109
Score = 41.8 bits (85), Expect(5) = 1e-028
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = +1 / +1
Query: 421 FENIRMEEVANPIIIDQYFC 480
FEN+RM+ V NPIIIDQ++C
Sbjct: 99544 FENVRMDNVDNPIIIDQFYC 99603
Score = 34.1 bits (68), Expect(5) = 1e-028
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1 / +3
Query: 271 ISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRIKSYE 384
+S+G LG+ V+ V + + TTNGVRIK+++
Sbjct: 99264 LSIGSLGKDNSTGIVAKVVLDTAFISETTNGVRIKTWQ 99377
>gb|CA926727.1|CA926727 MTU6CR.P18.E02 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 689
Score = 123 bits (264), Expect = 1e-027
Identities = 50/111 (45%), Positives = 72/111 (64%)
Frame = +1 / -2
Query: 1 HETNGTISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNS 180
+ N I G+ LNS+ FHI I+ +++ V+ V + A D NTDG+HV S++V I NS
Sbjct: 334 NSNNIKIDGLLSLNSQMFHIAINGCQNVRVQGVRVIAAGDSPNTDGIHVQLSTDVAIMNS 155
Query: 181 TIGTGDDCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVR 333
+ TGDDC+SIGPG+ + + + CGPG GIS+G L + DE V +VTV+
Sbjct: 154 STKTGDDCISIGPGTKNLWIERVRCGPGHGISIGSLAKTMDEPGVQNVTVK 2
>gb|CA927124.1|CA927124 MTU6CR.P5.C04 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 695
Score = 120 bits (257), Expect = 1e-026
Identities = 49/108 (45%), Positives = 70/108 (64%)
Frame = +1 / +1
Query: 1 HETNGTISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNS 180
+ N I G+ LNS+ FHI I+ +++ V+ V + A D NTDG+HV S++V I NS
Sbjct: 370 NSNNIKIDGLLSLNSQMFHIVINGRQNVRVQGVRVIAAGDSPNTDGIHVQLSTDVAIMNS 549
Query: 181 TIGTGDDCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDV 324
+I TGDDC+SIGPG+ + + + CGPG GIS+G L + DE V +V
Sbjct: 550 SIKTGDDCISIGPGTKNLWIERVRCGPGHGISIGSLAKTMDEPGVQNV 693
>gb|CX660397.1|CX660397 PO01032C08 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01032C08 5', mRNA sequence
Length = 698
Score = 120 bits (256), Expect = 2e-026
Identities = 54/136 (39%), Positives = 75/136 (55%)
Frame = +1 / +3
Query: 7 TNGTISGIKLLNSKFFHINIDTSKDITVKDVNITAPADVENTDGVHVGGSSNVRITNSTI 186
T ++GI + NS H+ D + V D +P + NTDG+H+ S +V I +S +
Sbjct: 270 TRVIVTGITIQNSPQTHLKFDGCTTVQVSDFRAASPENSPNTDGIHLENSHDVLIYSSDL 449
Query: 187 GTGDDCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGV 366
GDDCVSI G V ++N+ CGPG GIS+G LGR + VS+VTVRD + NT N
Sbjct: 450 ACGDDCVSIQTGCSQVYIHNVNCGPGHGISIGGLGRDNSKACVSNVTVRDVAMLNTXNWC 629
Query: 367 RIKSYEDAESVLTASH 414
+ K + T SH
Sbjct: 630 QNKDMAGRLWLSTRSH 677
>gb|CV253324.1|CV253324 WS0221.B21_J07 PTxD-ICC-A-12 Populus trichocarpa x Populus
deltoides cDNA clone WS0221_J07 3', mRNA sequence
Length = 722
Score = 56.1 bits (116), Expect(4) = 3e-026
Identities = 22/43 (51%), Positives = 28/43 (65%)
Frame = +1 / -2
Query: 253 CGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNTTNGVRIKSY 381
CGPG GIS+G LG+ E V +VTV+ T NGVRIK++
Sbjct: 721 CGPGHGISIGSLGKDSQEAGVQNVTVKTTTFTGTENGVRIKTW 593
Score = 53.3 bits (110), Expect(4) = 3e-026
Identities = 22/43 (51%), Positives = 30/43 (69%)
Frame = +1 / -2
Query: 517 SHVSIKDVTFRNISGTSSTPEAVSLLCSETQPCSGVSLIDVNV 645
S V I DVT+++I G+S+T AV CS+T PCSG+ L DV +
Sbjct: 466 SGVKISDVTYQDIHGSSATELAVKFDCSKTNPCSGIKLEDVKL 338
Score = 34.5 bits (69), Expect(4) = 3e-026
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1 / -2
Query: 406 ASHLTFENIRMEEVANPIIIDQYFCP 483
A ++ F++ M V NPI+IDQ +CP
Sbjct: 571 ARNILFQHAVMTNVQNPIVIDQNYCP 494
Score = 29.9 bits (59), Expect(4) = 3e-026
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1 / -2
Query: 640 NVEYAGKNNKTMAVCSNAKGTAKGSLQALDCL 735
+V+ N A CSNA G A G +Q CL
Sbjct: 349 DVKLTCNNQPAEASCSNAGGVASGVVQPTSCL 254
>gb|DT516784.1|DT516784 WS02432.B21_G08 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02432_G08 3', mRNA sequence
Length = 826
Score = 89.0 bits (188), Expect(3) = 6e-025
Identities = 36/70 (51%), Positives = 48/70 (68%)
Frame = +1 / -2
Query: 175 NSTIGTGDDCVSIGPGSDGVMVNNITCGPGQGISVGCLGRYKDEKDVSDVTVRDCVLRNT 354
+S + GDDCVSI G V ++N+ CGPG GIS+G LGR + VS+VTVRD + NT
Sbjct: 825 SSDLACGDDCVSIQTGCSQVYIHNVNCGPGHGISIGGLGRDNSKACVSNVTVRDVAMLNT 646
Query: 355 TNGVRIKSYE 384
GVRIK+++
Sbjct: 645 LTGVRIKTWQ 616
Score = 38.2 bits (77), Expect(3) = 6e-025
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1 / -2
Query: 415 LTFENIRMEEVANPIIIDQYFCPQKVCPGKRS 510
+TF NI++ V PI+IDQ++C + C + S
Sbjct: 591 VTFSNIQVSGVKTPIMIDQFYCDRSKCQNESS 496
Score = 24.9 bits (48), Expect(3) = 6e-025
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1 / -2
Query: 583 VSLLCSETQPCSGVS 627
V L CS+ PC+G+S
Sbjct: 435 VHLACSDDLPCTGIS 391
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 315,669,449
Number of Sequences: 369679
Number of extensions: 3615225
Number of successful extensions: 27955
Number of sequences better than 1.0e-020: 24
length of database: 67,802,888
effective HSP length: 52
effective length of database: 48,579,580
effective search space used: 12387792900
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)