TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3023930.2.1
(544 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA823251.1|CA823251 R23A11 two-month-old roots from clon... 122 6e-034
gb|CK090799.1|CK090799 F025P61.3pR Populus flower cDNA libr... 110 3e-033
gb|CV238031.1|CV238031 WS0125.B21_A19 PT-GT-FL-A-3 Populus ... 110 3e-033
gb|CV252237.1|CV252237 PX0011.B21_A12 PT-X-FL-A-1 Populus t... 110 3e-033
gb|DT469652.1|DT469652 WS01918.C21_H10 PT-DX-N-A-10 Populus... 109 3e-033
gb|CV228827.1|CV228827 WS01911.B21_F18 PT-DX-N-A-10 Populus... 109 3e-033
gb|CF236877.1|CF236877 PtaJXT8C6C0606 Poplar cDNA library f... 80 5e-030
gb|BI122281.1|BI122281 I004P65P Populus leaf cDNA library P... 108 2e-029
gb|CV262685.1|CV262685 WS0202.B21_D20 PTxN-IB-N-A-11 Populu... 110 2e-028
gb|CX181022.1|CX181022 F07_45-15_11.ab1 leaf inoculated wit... 81 8e-025
gb|CX185146.1|CX185146 F11_45-41_11.ab1 leaf inoculated wit... 79 1e-024
gb|CX655613.1|CX655613 PO02037C09 Poplar SC cDNA library Po... 109 2e-023
gb|CX657035.1|CX657035 PO02057F02 Poplar SC cDNA library Po... 106 8e-023
gb|AC149484.1| Populus trichocarpa clone Pop1-69M19, comple... 63 2e-022
gb|CN520211.1|CN520211 GQ0108.B3_D15 GQ010 Populus trichoca... 68 6e-021
>gb|CA823251.1|CA823251 R23A11 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 536
Score = 122 bits (262), Expect(2) = 6e-034
Identities = 55/101 (54%), Positives = 68/101 (67%)
Frame = +1 / +1
Query: 97 LVASAITWQNAKDKSTYLRIKVVNFGNQAVDLNISVAELATGVKKSGSKQTVLTSSSPLD 276
LVASAITW N+ D TYL+IK+VN GN+ V L +SV L + SGS +TVLTSS+ +D
Sbjct: 202 LVASAITWTNSVDGETYLKIKIVNVGNRHVSLKVSVDGLGLNSQLSGSTKTVLTSSNVMD 381
Query: 277 ENSFQQPEKVAPVSSPMANAGQQMGASVGPYSLTSFDLLLE 399
ENSF P KV P S + NA + M + PYS+TS DLL E
Sbjct: 382 ENSFTDPNKVVPDLSLLENADKDMNIIIAPYSMTSLDLLTE 504
Score = 40.9 bits (83), Expect(2) = 6e-034
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +1 / +1
Query: 1 YGCPNYWMLHFFKESSGAILHPTAIQVSS 87
YG P+YW+ FF+ESSGA L +Q +S
Sbjct: 109 YGTPSYWVQKFFRESSGATLLDAKLQTNS 195
>gb|CK090799.1|CK090799 F025P61.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F025P61 3', mRNA sequence
Length = 835
Score = 110 bits (234), Expect(3) = 3e-033
Identities = 47/89 (52%), Positives = 61/89 (68%)
Frame = +1 / -1
Query: 133 DKSTYLRIKVVNFGNQAVDLNISVAELATGVKKSGSKQTVLTSSSPLDENSFQQPEKVAP 312
D TYL+IK+VNFGN V+L +S+ L + SGS +TVLTSS+ +DENSF P+KV P
Sbjct: 493 DGKTYLKIKIVNFGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDENSFANPKKVVP 314
Query: 313 VSSPMANAGQQMGASVGPYSLTSFDLLLE 399
+ + NA + M + PYSLTSFDLL E
Sbjct: 313 AQTMLENADKDMDVVLSPYSLTSFDLLTE 227
Score = 40.9 bits (83), Expect(3) = 3e-033
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +1 / -1
Query: 1 YGCPNYWMLHFFKESSGAILHPTAIQVSS 87
YG P+YW+ FF+ESSGA L +Q +S
Sbjct: 619 YGTPSYWVQKFFRESSGATLLDAKLQTNS 533
Score = 28.6 bits (56), Expect(3) = 3e-033
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +1 / -1
Query: 97 LVASAITWQNAKDKS 141
LVASAITWQN+ K+
Sbjct: 526 LVASAITWQNSDGKT 482
>gb|CV238031.1|CV238031 WS0125.B21_A19 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0125_A19 3', mRNA sequence
Length = 716
Score = 110 bits (234), Expect(3) = 3e-033
Identities = 47/89 (52%), Positives = 61/89 (68%)
Frame = +1 / -1
Query: 133 DKSTYLRIKVVNFGNQAVDLNISVAELATGVKKSGSKQTVLTSSSPLDENSFQQPEKVAP 312
D TYL+IK+VNFGN V+L +S+ L + SGS +TVLTSS+ +DENSF P+KV P
Sbjct: 482 DGKTYLKIKIVNFGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDENSFANPKKVVP 303
Query: 313 VSSPMANAGQQMGASVGPYSLTSFDLLLE 399
+ + NA + M + PYSLTSFDLL E
Sbjct: 302 AQTMLENADKDMDVVLSPYSLTSFDLLTE 216
Score = 40.9 bits (83), Expect(3) = 3e-033
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +1 / -1
Query: 1 YGCPNYWMLHFFKESSGAILHPTAIQVSS 87
YG P+YW+ FF+ESSGA L +Q +S
Sbjct: 608 YGTPSYWVQKFFRESSGATLLDAKLQTNS 522
Score = 28.6 bits (56), Expect(3) = 3e-033
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +1 / -1
Query: 97 LVASAITWQNAKDKS 141
LVASAITWQN+ K+
Sbjct: 515 LVASAITWQNSDGKT 471
>gb|CV252237.1|CV252237 PX0011.B21_A12 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0011_A12 3', mRNA sequence
Length = 671
Score = 110 bits (234), Expect(3) = 3e-033
Identities = 47/89 (52%), Positives = 61/89 (68%)
Frame = +1 / -3
Query: 133 DKSTYLRIKVVNFGNQAVDLNISVAELATGVKKSGSKQTVLTSSSPLDENSFQQPEKVAP 312
D TYL+IK+VNFGN V+L +S+ L + SGS +TVLTSS+ +DENSF P+KV P
Sbjct: 486 DGKTYLKIKIVNFGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDENSFANPKKVVP 307
Query: 313 VSSPMANAGQQMGASVGPYSLTSFDLLLE 399
+ + NA + M + PYSLTSFDLL E
Sbjct: 306 AQTMLENADKDMDVVLSPYSLTSFDLLTE 220
Score = 40.9 bits (83), Expect(3) = 3e-033
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +1 / -3
Query: 1 YGCPNYWMLHFFKESSGAILHPTAIQVSS 87
YG P+YW+ FF+ESSGA L +Q +S
Sbjct: 612 YGTPSYWVQKFFRESSGATLLDAKLQTNS 526
Score = 28.6 bits (56), Expect(3) = 3e-033
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +1 / -3
Query: 97 LVASAITWQNAKDKS 141
LVASAITWQN+ K+
Sbjct: 519 LVASAITWQNSDGKT 475
>gb|DT469652.1|DT469652 WS01918.C21_H10 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01918_H10 3', mRNA sequence
Length = 790
Score = 109 bits (233), Expect(3) = 3e-033
Identities = 47/89 (52%), Positives = 61/89 (68%)
Frame = +1 / -1
Query: 133 DKSTYLRIKVVNFGNQAVDLNISVAELATGVKKSGSKQTVLTSSSPLDENSFQQPEKVAP 312
D TYL+IK+VNFGN V+L +S+ L + SGS +TVLTSS+ +DENSF P+KV P
Sbjct: 502 DGKTYLKIKIVNFGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDENSFANPKKVVP 323
Query: 313 VSSPMANAGQQMGASVGPYSLTSFDLLLE 399
+ + NA + M + PYSLTSFDLL E
Sbjct: 322 AQTMIENADKDMDVVLSPYSLTSFDLLTE 236
Score = 40.9 bits (83), Expect(3) = 3e-033
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +1 / -1
Query: 1 YGCPNYWMLHFFKESSGAILHPTAIQVSS 87
YG P+YW+ FF+ESSGA L +Q +S
Sbjct: 628 YGTPSYWVQKFFRESSGATLLDAKLQTNS 542
Score = 28.6 bits (56), Expect(3) = 3e-033
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +1 / -1
Query: 97 LVASAITWQNAKDKS 141
LVASAITWQN+ K+
Sbjct: 535 LVASAITWQNSDGKT 491
>gb|CV228827.1|CV228827 WS01911.B21_F18 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01911_F18 3', mRNA sequence
Length = 765
Score = 109 bits (233), Expect(3) = 3e-033
Identities = 47/89 (52%), Positives = 61/89 (68%)
Frame = +1 / -3
Query: 133 DKSTYLRIKVVNFGNQAVDLNISVAELATGVKKSGSKQTVLTSSSPLDENSFQQPEKVAP 312
D TYL+IK+VNFGN V+L +S+ L + SGS +TVLTSS+ +DENSF P+KV P
Sbjct: 502 DGKTYLKIKIVNFGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDENSFANPKKVVP 323
Query: 313 VSSPMANAGQQMGASVGPYSLTSFDLLLE 399
+ + NA + M + PYSLTSFDLL E
Sbjct: 322 AQTMIENADKDMDVVLSPYSLTSFDLLTE 236
Score = 40.9 bits (83), Expect(3) = 3e-033
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +1 / -3
Query: 1 YGCPNYWMLHFFKESSGAILHPTAIQVSS 87
YG P+YW+ FF+ESSGA L +Q +S
Sbjct: 628 YGTPSYWVQKFFRESSGATLLDAKLQTNS 542
Score = 28.6 bits (56), Expect(3) = 3e-033
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +1 / -3
Query: 97 LVASAITWQNAKDKS 141
LVASAITWQN+ K+
Sbjct: 535 LVASAITWQNSDGKT 491
>gb|CF236877.1|CF236877 PtaJXT8C6C0606 Poplar cDNA library from young tension xylem Populus
alba x Populus tremula cDNA 5', mRNA sequence
Length = 630
Score = 80.3 bits (169), Expect(4) = 5e-030
Identities = 33/62 (53%), Positives = 44/62 (70%)
Frame = +1 / +3
Query: 127 AKDKSTYLRIKVVNFGNQAVDLNISVAELATGVKKSGSKQTVLTSSSPLDENSFQQPEKV 306
+ D TYL+IK+VNFGN V+L +S+ L + SGS +TVLTSS+ +DENSF P+KV
Sbjct: 273 SSDGKTYLKIKIVNFGNSKVNLKVSIVGLGLSSQLSGSTKTVLTSSNLMDENSFPNPKKV 452
Query: 307 AP 312
P
Sbjct: 453 VP 458
Score = 40.9 bits (83), Expect(4) = 5e-030
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +1 / +3
Query: 1 YGCPNYWMLHFFKESSGAILHPTAIQVSS 87
YG P+YW+ FF+ESSGA L +Q +S
Sbjct: 153 YGTPSYWVQKFFRESSGATLLDAKLQTNS 239
Score = 38.2 bits (77), Expect(4) = 5e-030
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +1 / +1
Query: 331 NAGQQMGASVGPYSLTSFDLLLEPSKH 411
NAG+ M + PYSLTSFDLL E ++
Sbjct: 478 NAGKDMDVVLSPYSLTSFDLLTESKQY 558
Score = 26.3 bits (51), Expect(4) = 5e-030
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +1 / +3
Query: 97 LVASAITWQNAKDKS 141
LVASAITWQ++ K+
Sbjct: 246 LVASAITWQSSDGKT 290
>gb|BI122281.1|BI122281 I004P65P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 593
Score = 108 bits (230), Expect(2) = 2e-029
Identities = 48/90 (53%), Positives = 61/90 (67%)
Frame = +1 / +3
Query: 97 LVASAITWQNAKDKSTYLRIKVVNFGNQAVDLNISVAELATGVKKSGSKQTVLTSSSPLD 276
LVASAITW N+ D TYL+IK+VNFGN+ V+L +SV L + SGS +TVLTSS+ +D
Sbjct: 324 LVASAITWTNSVDGETYLKIKIVNFGNRHVNLEVSVDGLGLNSQLSGSTKTVLTSSNVMD 503
Query: 277 ENSFQQPEKVAPVSSPMANAGQQMGASVGP 366
ENSF P KV P S + NA + M + P
Sbjct: 504 ENSFTDPNKVVPDLSLLENADKDMNIIIAP 593
Score = 40.5 bits (82), Expect(2) = 2e-029
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +1 / +3
Query: 1 YGCPNYWMLHFFKESSGAILHPTAIQVSS 87
YG P+YW+ FF+ESSGA L +Q +S
Sbjct: 231 YGTPSYWVQKFFRESSGATLLDANLQTNS 317
>gb|CV262685.1|CV262685 WS0202.B21_D20 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0202_D20 3', mRNA sequence
Length = 587
Score = 110 bits (234), Expect(3) = 2e-028
Identities = 47/89 (52%), Positives = 61/89 (68%)
Frame = +1 / -1
Query: 133 DKSTYLRIKVVNFGNQAVDLNISVAELATGVKKSGSKQTVLTSSSPLDENSFQQPEKVAP 312
D TYL+IK+VNFGN V+L +S+ L + SGS +TVLTSS+ +DENSF P+KV P
Sbjct: 485 DGKTYLKIKIVNFGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDENSFANPKKVVP 306
Query: 313 VSSPMANAGQQMGASVGPYSLTSFDLLLE 399
+ + NA + M + PYSLTSFDLL E
Sbjct: 305 AQTMLENADKDMDVVLSPYSLTSFDLLTE 219
Score = 28.6 bits (56), Expect(3) = 2e-028
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +1 / -1
Query: 97 LVASAITWQNAKDKS 141
LVASAITWQN+ K+
Sbjct: 518 LVASAITWQNSDGKT 474
Score = 24.4 bits (47), Expect(3) = 2e-028
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1 / -1
Query: 31 FFKESSGAILHPTAIQVSS 87
FF+ESSGA L +Q +S
Sbjct: 581 FFRESSGATLLDAKLQTNS 525
>gb|CX181022.1|CX181022 F07_45-15_11.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 512
Score = 81.3 bits (171), Expect(3) = 8e-025
Identities = 34/67 (50%), Positives = 46/67 (68%)
Frame = +1 / +1
Query: 133 DKSTYLRIKVVNFGNQAVDLNISVAELATGVKKSGSKQTVLTSSSPLDENSFQQPEKVAP 312
D TYL+IK+VNFGN V+L +S+ L + SGS +TVLTSS+ +DENSF P+KV P
Sbjct: 310 DGKTYLKIKIVNFGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDENSFANPKKVVP 489
Query: 313 VSSPMAN 333
+ + N
Sbjct: 490 AQTMIEN 510
Score = 40.9 bits (83), Expect(3) = 8e-025
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +1 / +1
Query: 1 YGCPNYWMLHFFKESSGAILHPTAIQVSS 87
YG P+YW+ FF+ESSGA L +Q +S
Sbjct: 184 YGTPSYWVQKFFRESSGATLLDAKLQTNS 270
Score = 28.6 bits (56), Expect(3) = 8e-025
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +1 / +1
Query: 97 LVASAITWQNAKDKS 141
LVASAITWQN+ K+
Sbjct: 277 LVASAITWQNSDGKT 321
>gb|CX185146.1|CX185146 F11_45-41_11.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 380
Score = 79.4 bits (167), Expect(3) = 1e-024
Identities = 33/63 (52%), Positives = 44/63 (69%)
Frame = +1 / +3
Query: 133 DKSTYLRIKVVNFGNQAVDLNISVAELATGVKKSGSKQTVLTSSSPLDENSFQQPEKVAP 312
D TYL+IK+VNFGN V+L +S+ L + SGS +TVLTSS+ +DENSF P+KV P
Sbjct: 189 DGKTYLKIKIVNFGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDENSFANPKKVVP 368
Query: 313 VSS 321
+
Sbjct: 369 AQT 377
Score = 40.9 bits (83), Expect(3) = 1e-024
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +1 / +3
Query: 1 YGCPNYWMLHFFKESSGAILHPTAIQVSS 87
YG P+YW+ FF+ESSGA L +Q +S
Sbjct: 63 YGTPSYWVQKFFRESSGATLLDAKLQTNS 149
Score = 28.6 bits (56), Expect(3) = 1e-024
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +1 / +3
Query: 97 LVASAITWQNAKDKS 141
LVASAITWQN+ K+
Sbjct: 156 LVASAITWQNSDGKT 200
>gb|CX655613.1|CX655613 PO02037C09 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02037C09 5', mRNA sequence
Length = 426
Score = 109 bits (232), Expect = 2e-023
Identities = 49/92 (53%), Positives = 61/92 (66%)
Frame = +1 / +3
Query: 124 NAKDKSTYLRIKVVNFGNQAVDLNISVAELATGVKKSGSKQTVLTSSSPLDENSFQQPEK 303
N+ D TYL+IK+VNFGN+ V L +SV L + SGS +TVLTSS+ +DENSF P K
Sbjct: 3 NSVDGETYLKIKIVNFGNRHVSLEVSVDGLGLNSQLSGSTKTVLTSSNVMDENSFTDPNK 182
Query: 304 VAPVSSPMANAGQQMGASVGPYSLTSFDLLLE 399
V P S + NA + M + PYSLTS DLL E
Sbjct: 183 VVPDLSLLENADKDMNIIIAPYSLTSLDLLTE 278
>gb|CX657035.1|CX657035 PO02057F02 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02057F02 5', mRNA sequence
Length = 455
Score = 106 bits (227), Expect = 8e-023
Identities = 48/92 (52%), Positives = 61/92 (66%)
Frame = +1 / +3
Query: 124 NAKDKSTYLRIKVVNFGNQAVDLNISVAELATGVKKSGSKQTVLTSSSPLDENSFQQPEK 303
N+ D TYL+IK+VNFGN+ V L +SV L + SGS +TVLTSS+ +DENS Q P K
Sbjct: 3 NSVDGETYLKIKIVNFGNRHVSLEVSVDGLGLNSQLSGSTKTVLTSSNVMDENSXQDPNK 182
Query: 304 VAPVSSPMANAGQQMGASVGPYSLTSFDLLLE 399
V P S + NA + + + PYSLTS DLL E
Sbjct: 183 VVPDLSLLENADKDINIIIAPYSLTSLDLLTE 278
>gb|AC149484.1| Populus trichocarpa clone Pop1-69M19, complete sequence
Length = 96930
Score = 63.4 bits (132), Expect(4) = 2e-022
Identities = 28/57 (49%), Positives = 38/57 (66%)
Frame = +1 / -3
Query: 139 STYLRIKVVNFGNQAVDLNISVAELATGVKKSGSKQTVLTSSSPLDENSFQQPEKVA 309
S + ++VNFGN+ V L +SV L + SGS +TVLTSS+ +DENSF P KV+
Sbjct: 66544 SRQMYFQIVNFGNRHVSLKVSVDGLGLNSQLSGSTKTVLTSSNVMDENSFTDPNKVS 66374
Score = 43.7 bits (89), Expect(4) = 2e-022
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = +1 / -3
Query: 1 YGCPNYWMLHFFKESSGAILHPTAIQVSS 87
YG P+YW+L FF+ESSGA L +Q +S
Sbjct: 66868 YGTPSYWVLKFFRESSGATLLDAKLQTNS 66782
Score = 39.1 bits (79), Expect(4) = 2e-022
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +1 / -3
Query: 97 LVASAITWQNAKDKSTYLRIKV 162
LVASAITW N+ D TYL+IKV
Sbjct: 66775 LVASAITWTNSVDGETYLKIKV 66710
Score = 36.3 bits (73), Expect(4) = 2e-022
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +1 / -1
Query: 301 KVAPVSSPMANAGQQMGASVGPYSLTSFDLLLE 399
+V P S + NA + M + PYSLTS DLL E
Sbjct: 66225 QVVPDLSLLENADKDMNIIIAPYSLTSLDLLTE 66127
>gb|CN520211.1|CN520211 GQ0108.B3_D15 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0108_D15 5', mRNA sequence
Length = 754
Score = 68.0 bits (142), Expect(3) = 6e-021
Identities = 29/58 (50%), Positives = 39/58 (67%)
Frame = +1 / +2
Query: 133 DKSTYLRIKVVNFGNQAVDLNISVAELATGVKKSGSKQTVLTSSSPLDENSFQQPEKV 306
D TYL+IK+VNFGN V+L +S+ L + SGS +TVLTSS+ +D F P+KV
Sbjct: 548 DGKTYLKIKIVNFGNSKVNLKVSIDGLGLSSQLSGSTKTVLTSSNLMDXXXFANPKKV 721
Score = 40.9 bits (83), Expect(3) = 6e-021
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +1 / +2
Query: 1 YGCPNYWMLHFFKESSGAILHPTAIQVSS 87
YG P+YW+ FF+ESSGA L +Q +S
Sbjct: 422 YGTPSYWVQKFFRESSGATLLDAKLQTNS 508
Score = 28.6 bits (56), Expect(3) = 6e-021
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +1 / +2
Query: 97 LVASAITWQNAKDKS 141
LVASAITWQN+ K+
Sbjct: 515 LVASAITWQNSDGKT 559
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 272,819,079
Number of Sequences: 369679
Number of extensions: 3652642
Number of successful extensions: 60885
Number of sequences better than 1.0e-020: 18
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 6314454411
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)