TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2907809.2.1
(614 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV268998.1|CV268998 WS0207.B21_A21 PTxN-IB-N-A-11 Populu... 163 1e-039
gb|DT509371.1|DT509371 WS02423.BR_I19 PTxD-ICC-N-A-14 Popul... 159 2e-038
gb|DT513985.1|DT513985 WS02423.B21_I19 PTxD-ICC-N-A-14 Popu... 159 2e-038
gb|CV263573.1|CV263573 WS02022.B21_D12 PTxN-IB-N-A-11 Popul... 158 3e-038
gb|CK317983.1|CK317983 B9P04b02 Populus stem seasonal libra... 123 4e-034
gb|DT487189.1|DT487189 WS02533.B21_A07 PT-MB-N-A-15 Populus... 93 7e-034
gb|DT481814.1|DT481814 WS02533.BR_A07 PT-MB-N-A-15 Populus ... 93 7e-034
gb|DT488047.1|DT488047 WS02535.B21_F21 PT-MB-N-A-15 Populus... 93 7e-034
gb|CV283584.1|CV283584 WS0187.B21_L19 PTxD-IL-N-A-9 Populus... 93 2e-033
gb|AI166137.1|AI166137 B008p30u Hybrid aspen plasmid librar... 127 2e-032
gb|BU819546.1|BU819546 UA44BPG08 Populus tremula cambium cD... 124 3e-032
gb|CV244009.1|CV244009 WS0253.B21_H14 PT-MB-N-A-15 Populus ... 110 4e-032
gb|CV227320.1|CV227320 WS0166.B21_N11 PT-DX-A-7 Populus tri... 129 1e-029
gb|AJ774612.1|AJ774612 AJ774612 Populus euphratica shoot 3-... 129 2e-029
gb|AJ778430.1|AJ778430 AJ778430 Populus euphratica cambium ... 129 2e-029
gb|BI130272.1|BI130272 G103P22Y Populus cambium cDNA librar... 128 2e-029
gb|BI130315.1|BI130315 G103P75Y Populus cambium cDNA librar... 128 2e-029
gb|BU813569.1|BU813569 N012A05 Populus bark cDNA library Po... 128 2e-029
gb|BU833717.1|BU833717 T051F06 Populus apical shoot cDNA li... 128 2e-029
gb|BU863289.1|BU863289 S026C11 Populus imbibed seed cDNA li... 128 2e-029
gb|BU890366.1|BU890366 P035G06 Populus petioles cDNA librar... 128 2e-029
gb|CF229021.1|CF229021 PtaXM0020B9B0903 Poplar cDNA library... 128 2e-029
gb|CF229919.1|CF229919 PtaC0001E3E0309 Poplar cDNA library ... 128 2e-029
gb|CF232941.1|CF232941 PtaJXO0017E7E0709 Poplar cDNA librar... 128 2e-029
gb|CF235076.1|CF235076 PtaJXT0018F12F1212 Poplar cDNA libra... 128 2e-029
gb|CK091358.1|CK091358 F085P40.3pR Populus flower cDNA libr... 128 2e-029
gb|CV235555.1|CV235555 WS0122.B21_J15 PT-GT-FL-A-3 Populus ... 128 2e-029
gb|CV246233.1|CV246233 WS0111.B21_L13 PT-P-FL-A-2 Populus t... 128 2e-029
gb|CV246433.1|CV246433 WS01110.B21_H12 PT-P-FL-A-2 Populus ... 128 2e-029
gb|CV247516.1|CV247516 WS01118.B21_G23 PT-P-FL-A-2 Populus ... 128 2e-029
gb|CV247654.1|CV247654 WS01118.B21_O04 PT-P-FL-A-2 Populus ... 128 2e-029
gb|CV251812.1|CV251812 WS0118.B21_D07 PT-P-FL-A-2 Populus t... 128 2e-029
gb|CV252203.1|CV252203 WS0119.B21_N23 PT-P-FL-A-2 Populus t... 128 2e-029
gb|CV267229.1|CV267229 WS02031.B21_C23 PTxN-IB-N-A-11 Popul... 128 2e-029
gb|CV273980.1|CV273980 WS01712.B21_N02 PTxD-NR-A-8 Populus ... 128 2e-029
gb|DT471950.1|DT471950 WS0122.BR_J15 PT-GT-FL-A-3 Populus t... 128 2e-029
gb|DT493557.1|DT493557 WS0111.BR_L13 PT-P-FL-A-2 Populus tr... 128 2e-029
gb|DT493796.1|DT493796 WS01116.BR_H17 PT-P-FL-A-2 Populus t... 128 2e-029
gb|DT494440.1|DT494440 WS01118.BR.1_G23 PT-P-FL-A-2 Populus... 128 2e-029
gb|DT494596.1|DT494596 WS01118.BR.1_O04 PT-P-FL-A-2 Populus... 128 2e-029
gb|DT497615.1|DT497615 WS01126.BR_P20 PT-P-FL-A-2 Populus t... 128 2e-029
gb|DT498363.1|DT498363 WS0115.BR_C08 PT-P-FL-A-2 Populus tr... 128 2e-029
gb|DT499400.1|DT499400 WS0118.BR_D07 PT-P-FL-A-2 Populus tr... 128 2e-029
gb|BU827803.1|BU827803 K009P23P Populus apical shoot cDNA l... 128 3e-029
gb|BU820005.1|BU820005 UA50BPB12 Populus tremula cambium cD... 127 6e-029
gb|AJ770904.1|AJ770904 AJ770904 Populus euphratica shoot in... 127 6e-029
gb|CF231313.1|CF231313 PtaC0019H7H0715 Poplar cDNA library ... 127 8e-029
gb|CV267638.1|CV267638 WS02032.B21_E18 PTxN-IB-N-A-11 Popul... 127 8e-029
gb|BU815949.1|BU815949 N058C02 Populus bark cDNA library Po... 126 1e-028
gb|BU819827.1|BU819827 UA48BPB01 Populus tremula cambium cD... 126 1e-028
gb|BU823953.1|BU823953 UB58DPE05 Populus tremula cambium cD... 126 1e-028
gb|BU827530.1|BU827530 K004P32P Populus apical shoot cDNA l... 126 1e-028
gb|BU834650.1|BU834650 T064A08 Populus apical shoot cDNA li... 126 1e-028
gb|BU835912.1|BU835912 T080C01 Populus apical shoot cDNA li... 126 1e-028
gb|BU836136.1|BU836136 T083B02 Populus apical shoot cDNA li... 126 1e-028
gb|BU869720.1|BU869720 Q003G04 Populus flower cDNA library ... 126 1e-028
gb|BU886840.1|BU886840 R051C01 Populus root cDNA library Po... 126 1e-028
gb|BU892882.1|BU892882 P070F07 Populus petioles cDNA librar... 126 1e-028
gb|BU893284.1|BU893284 P075G02 Populus petioles cDNA librar... 126 1e-028
gb|BU895911.1|BU895911 X032H05 Populus wood cDNA library Po... 126 1e-028
gb|CK097770.1|CK097770 UB61BPC03.3pR Populus active cambium... 126 1e-028
gb|CK107465.1|CK107465 UB58DPE05.5pR Populus active cambium... 126 1e-028
gb|CK107549.1|CK107549 UB61BPC03.5pR Populus active cambium... 126 1e-028
gb|CV259471.1|CV259471 WS02011.B21_H05 PTxN-IB-N-A-11 Popul... 126 1e-028
gb|CV260877.1|CV260877 WS02015.B21_E01 PTxN-IB-N-A-11 Popul... 126 1e-028
gb|CV266852.1|CV266852 WS02030.B21_C11 PTxN-IB-N-A-11 Popul... 126 1e-028
gb|CX182920.1|CX182920 A09_45-32_01.ab1 leaf inoculated wit... 126 1e-028
gb|CX183882.1|CX183882 E12_45-14_10.ab1 leaf inoculated wit... 126 1e-028
gb|CX185765.1|CX185765 H11_45-73_15.ab1 leaf inoculated wit... 126 1e-028
gb|CX186873.1|CX186873 A01_45-49_01.ab1 leaf inoculated wit... 126 1e-028
gb|DT522517.1|DT522517 WS02037.B21_D08 PTxN-IB-N-A-11 Popul... 126 1e-028
gb|CK318727.1|CK318727 X9P02f11 Populus stem seasonal libra... 120 1e-028
gb|CF231568.1|CF231568 PtaC0023A2A0202 Poplar cDNA library ... 126 2e-028
gb|CF227363.1|CF227363 PtaD2G11G1113 Poplar cDNA library fr... 125 3e-028
gb|CA821725.1|CA821725 RSH06F04 two-month-old roots from cl... 124 4e-028
gb|CA823454.1|CA823454 R26D09 two-month-old roots from clon... 124 4e-028
gb|CB239843.1|CB239843 RSH17E07 two-month-old roots from cl... 124 4e-028
gb|CX172859.1|CX172859 C03_69-64_05.ab1 leaf inoculated wit... 124 4e-028
gb|CX175742.1|CX175742 D09_69-33_07.ab1 leaf inoculated wit... 124 4e-028
gb|CX170445.1|CX170445 C08_69-68_06.ab1 leaf inoculated wit... 124 4e-028
gb|BU814054.1|BU814054 N024D09 Populus bark cDNA library Po... 124 6e-028
gb|CX656995.1|CX656995 PO02029F08 Poplar SC cDNA library Po... 124 6e-028
gb|AJ768649.1|AJ768649 AJ768649 Populus euphratica leaf adu... 123 8e-028
gb|AJ779165.1|AJ779165 AJ779165 Populus euphratica cambium ... 123 8e-028
gb|BU816913.1|BU816913 UA10BPG05 Populus tremula cambium cD... 123 1e-027
gb|BU816993.1|BU816993 UA11BPF04 Populus tremula cambium cD... 123 1e-027
gb|CF231116.1|CF231116 PtaC0017E5E0509 Poplar cDNA library ... 100 2e-027
gb|BU824175.1|BU824175 UB61BPC03 Populus tremula cambium cD... 122 2e-027
gb|BU868948.1|BU868948 M124B05 Populus flower cDNA library ... 122 2e-027
gb|CN520082.1|CN520082 GQ0107.B3_A12 GQ010 Populus trichoca... 122 2e-027
gb|CV225692.1|CV225692 WS0162.B21_C03 PT-DX-A-7 Populus tri... 122 2e-027
gb|CV228753.1|CV228753 WS01911.B21_C03 PT-DX-N-A-10 Populus... 122 2e-027
gb|CV246770.1|CV246770 WS01111.B21_N24 PT-P-FL-A-2 Populus ... 122 2e-027
gb|CV269464.1|CV269464 WS0208.B21_F07 PTxN-IB-N-A-11 Populu... 122 2e-027
gb|CV274388.1|CV274388 WS0173.B21_B18 PTxD-NR-A-8 Populus t... 122 2e-027
gb|CV278527.1|CV278527 WS0146.B21_K06 PTxD-IL-A-5 Populus t... 122 2e-027
gb|CX168178.1|CX168178 F09_69-96_11.ab1 leaf inoculated wit... 122 2e-027
gb|CX172828.1|CX172828 D02_69-86_08.ab1 leaf inoculated wit... 122 2e-027
gb|CX173588.1|CX173588 F12_69-27_12.ab1 leaf inoculated wit... 122 2e-027
gb|CX178237.1|CX178237 E02_45-32_10.ab1 leaf inoculated wit... 122 2e-027
gb|CX184933.1|CX184933 B07_45-71_03.ab1 leaf inoculated wit... 122 2e-027
gb|DT470240.1|DT470240 WS01920.C21_E14 PT-DX-N-A-10 Populus... 122 2e-027
gb|CK319498.1|CK319498 X9P11d12 Populus stem seasonal libra... 122 3e-027
gb|CK317726.1|CK317726 B9P01a08 Populus stem seasonal libra... 121 4e-027
gb|BU823749.1|BU823749 UB56BPB03 Populus tremula cambium cD... 121 4e-027
gb|CN522763.1|CN522763 GQ0121.B3_A03 GQ012 Populus trichoca... 121 4e-027
gb|CX656135.1|CX656135 PO02047D08 Poplar SC cDNA library Po... 121 4e-027
gb|CX183705.1|CX183705 F11_45-93_11.ab1 leaf inoculated wit... 120 7e-027
gb|BU830501.1|BU830501 T009B11 Populus apical shoot cDNA li... 120 1e-026
gb|BU865752.1|BU865752 S058B02 Populus imbibed seed cDNA li... 120 1e-026
gb|CV246935.1|CV246935 WS01116.B21_H17 PT-P-FL-A-2 Populus ... 116 9e-026
gb|CV246494.1|CV246494 WS01110.B21_L17 PT-P-FL-A-2 Populus ... 116 1e-025
gb|CV226899.1|CV226899 WS0165.B21_J20 PT-DX-A-7 Populus tri... 114 4e-025
gb|CF229121.1|CF229121 PtaXM0021E1E0109 Poplar cDNA library... 113 8e-025
gb|CV271769.1|CV271769 WS0155.B21_K04 PTxN-IB-A-6 Populus t... 111 3e-024
gb|BU833211.1|BU833211 T043F07 Populus apical shoot cDNA li... 110 8e-024
gb|CV241561.1|CV241561 WS02512.B21_J02 PT-MB-N-A-15 Populus... 108 3e-023
gb|CV241602.1|CV241602 WS02512.B21_L02 PT-MB-N-A-15 Populus... 108 3e-023
gb|BU881239.1|BU881239 UM60TC09 Populus flower cDNA library... 106 1e-022
gb|BU872999.1|BU872999 Q050A09 Populus flower cDNA library ... 103 1e-021
gb|BI137387.1|BI137387 F085P40Y Populus flower cDNA library... 100 6e-021
gb|CV225502.1|CV225502 WS0161.B21_J12 PT-DX-A-7 Populus tri... 100 8e-021
>gb|CV268998.1|CV268998 WS0207.B21_A21 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0207_A21 3', mRNA sequence
Length = 541
Score = 163 bits (350), Expect = 1e-039
Identities = 61/80 (76%), Positives = 72/80 (90%)
Frame = +1 / -1
Query: 118 AAMGGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEH 297
++MGGGN QKSKMARERN EK + KGSQLE+NKKAM+IQCK+CMQTFICTT+E KC+EH
Sbjct: 409 SSMGGGNGQKSKMARERNMEKQRAAKGSQLESNKKAMSIQCKVCMQTFICTTTEVKCREH 230
Query: 298 AEARHPKNDLYQCFPHLKN* 357
AEA+HPK+D+Y CFPHLK *
Sbjct: 229 AEAKHPKSDVYACFPHLKK* 170
>gb|DT509371.1|DT509371 WS02423.BR_I19 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02423_I19 5', mRNA sequence
Length = 645
Score = 159 bits (341), Expect = 2e-038
Identities = 60/78 (76%), Positives = 69/78 (88%)
Frame = +1 / +2
Query: 124 MGGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAE 303
MGGGN QKSKMARERN EK + KGSQLE+NKKAM+IQCK+CM TFICTT+E KC+EHAE
Sbjct: 83 MGGGNGQKSKMARERNMEKQRAAKGSQLESNKKAMSIQCKVCMLTFICTTTEVKCREHAE 262
Query: 304 ARHPKNDLYQCFPHLKN* 357
A+HPK+D+Y CFPHLK *
Sbjct: 263 AKHPKSDVYACFPHLKK* 316
>gb|DT513985.1|DT513985 WS02423.B21_I19 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02423_I19 3', mRNA sequence
Length = 645
Score = 159 bits (341), Expect = 2e-038
Identities = 60/78 (76%), Positives = 69/78 (88%)
Frame = +1 / -2
Query: 124 MGGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAE 303
MGGGN QKSKMARERN EK + KGSQLE+NKKAM+IQCK+CM TFICTT+E KC+EHAE
Sbjct: 563 MGGGNGQKSKMARERNMEKQRAAKGSQLESNKKAMSIQCKVCMLTFICTTTEVKCREHAE 384
Query: 304 ARHPKNDLYQCFPHLKN* 357
A+HPK+D+Y CFPHLK *
Sbjct: 383 AKHPKSDVYACFPHLKK* 330
>gb|CV263573.1|CV263573 WS02022.B21_D12 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02022_D12 3', mRNA sequence
Length = 836
Score = 158 bits (339), Expect = 3e-038
Identities = 60/77 (77%), Positives = 67/77 (87%)
Frame = +1 / -3
Query: 124 MGGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAE 303
MGGGN QKSKMARERN EK K K SQLE+NKKAM IQCK+CMQTFICTT+E KC+EHAE
Sbjct: 444 MGGGNGQKSKMARERNIEKQKAAKRSQLESNKKAMTIQCKVCMQTFICTTTEVKCREHAE 265
Query: 304 ARHPKNDLYQCFPHLKN 354
A+H K+D+Y CFPHLKN
Sbjct: 264 AKHAKSDVYACFPHLKN 214
>gb|CK317983.1|CK317983 B9P04b02 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 482
Score = 123 bits (263), Expect(2) = 4e-034
Identities = 46/61 (75%), Positives = 54/61 (88%)
Frame = +1 / +2
Query: 175 EKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEARHPKNDLYQCFPHLKN 354
++ G KGSQLEANKKAM+IQCK+CMQTFICTTSE KC+EHAEA+HPK+D+ CFPHLK
Sbjct: 140 KQKAGSKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPKSDVSACFPHLKK 319
Query: 355 * 357
*
Sbjct: 320 * 322
Score = 41.4 bits (84), Expect(2) = 4e-034
Identities = 16/23 (69%), Positives = 18/23 (78%)
Frame = +1 / +2
Query: 124 MGGGNAQKSKMARERNAEKNKGG 192
MG GN QK+KMARERN +K K G
Sbjct: 86 MGRGNGQKAKMARERNLDKQKAG 154
>gb|DT487189.1|DT487189 WS02533.B21_A07 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02533_A07 3', mRNA sequence
Length = 597
Score = 93.2 bits (197), Expect(2) = 7e-034
Identities = 31/41 (75%), Positives = 38/41 (92%)
Frame = +1 / -2
Query: 232 IQCKICMQTFICTTSEAKCKEHAEARHPKNDLYQCFPHLKN 354
+QCK+CMQTFICTT+E KC+EHAEA+H K+D+Y CFPHLKN
Sbjct: 293 MQCKVCMQTFICTTTEVKCREHAEAKHAKSDVYACFPHLKN 171
Score = 70.7 bits (148), Expect(2) = 7e-034
Identities = 30/38 (78%), Positives = 31/38 (81%)
Frame = +1 / -3
Query: 124 MGGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQ 237
MGGGN QKSKMARERN EK K K SQLE+NKKAM IQ
Sbjct: 508 MGGGNGQKSKMARERNIEKQKAAKRSQLESNKKAMTIQ 395
>gb|DT481814.1|DT481814 WS02533.BR_A07 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02533_A07 5', mRNA sequence
Length = 583
Score = 93.2 bits (197), Expect(2) = 7e-034
Identities = 31/41 (75%), Positives = 38/41 (92%)
Frame = +1 / +2
Query: 232 IQCKICMQTFICTTSEAKCKEHAEARHPKNDLYQCFPHLKN 354
+QCK+CMQTFICTT+E KC+EHAEA+H K+D+Y CFPHLKN
Sbjct: 305 MQCKVCMQTFICTTTEVKCREHAEAKHAKSDVYACFPHLKN 427
Score = 70.7 bits (148), Expect(2) = 7e-034
Identities = 30/38 (78%), Positives = 31/38 (81%)
Frame = +1 / +3
Query: 124 MGGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQ 237
MGGGN QKSKMARERN EK K K SQLE+NKKAM IQ
Sbjct: 90 MGGGNGQKSKMARERNIEKQKAAKRSQLESNKKAMTIQ 203
>gb|DT488047.1|DT488047 WS02535.B21_F21 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02535_F21 3', mRNA sequence
Length = 532
Score = 93.2 bits (197), Expect(2) = 7e-034
Identities = 31/41 (75%), Positives = 38/41 (92%)
Frame = +1 / -3
Query: 232 IQCKICMQTFICTTSEAKCKEHAEARHPKNDLYQCFPHLKN 354
+QCK+CMQTFICTT+E KC+EHAEA+H K+D+Y CFPHLKN
Sbjct: 215 MQCKVCMQTFICTTTEVKCREHAEAKHAKSDVYACFPHLKN 93
Score = 70.7 bits (148), Expect(2) = 7e-034
Identities = 30/38 (78%), Positives = 31/38 (81%)
Frame = +1 / -1
Query: 124 MGGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQ 237
MGGGN QKSKMARERN EK K K SQLE+NKKAM IQ
Sbjct: 430 MGGGNGQKSKMARERNIEKQKAAKRSQLESNKKAMTIQ 317
>gb|CV283584.1|CV283584 WS0187.B21_L19 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS0187_L19 3', mRNA sequence
Length = 523
Score = 93.2 bits (197), Expect(2) = 2e-033
Identities = 31/41 (75%), Positives = 38/41 (92%)
Frame = +1 / -2
Query: 232 IQCKICMQTFICTTSEAKCKEHAEARHPKNDLYQCFPHLKN 354
+QCK+CMQTFICTT+E KC+EHAEA+H K+D+Y CFPHLKN
Sbjct: 210 MQCKVCMQTFICTTTEVKCREHAEAKHAKSDVYACFPHLKN 88
Score = 69.3 bits (145), Expect(2) = 2e-033
Identities = 30/38 (78%), Positives = 30/38 (78%)
Frame = +1 / -3
Query: 124 MGGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQ 237
MGGGN QKSKMARERN EK K K SQLE NKKAM IQ
Sbjct: 425 MGGGNGQKSKMARERNIEKQKAAKRSQLEYNKKAMTIQ 312
>gb|AI166137.1|AI166137 B008p30u Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 378
Score = 127 bits (271), Expect(2) = 2e-032
Identities = 47/61 (77%), Positives = 55/61 (90%)
Frame = +1 / +2
Query: 175 EKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEARHPKNDLYQCFPHLKN 354
++ G KGSQLEANKKAM+IQCK+CMQTFICTTSE KC+EHAEA+HPK+D+Y CFPHLK
Sbjct: 68 KQKAGSKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPKSDVYGCFPHLKK 247
Query: 355 * 357
*
Sbjct: 248 * 250
Score = 31.8 bits (63), Expect(2) = 2e-032
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1 / +2
Query: 142 QKSKMARERNAEKNKGG 192
QK+KMARERN +K K G
Sbjct: 32 QKAKMARERNLDKQKAG 82
>gb|BU819546.1|BU819546 UA44BPG08 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 482
Score = 124 bits (265), Expect(2) = 3e-032
Identities = 45/61 (73%), Positives = 55/61 (90%)
Frame = +1 / +3
Query: 175 EKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEARHPKNDLYQCFPHLKN 354
++ G KGSQLE+NKKAM+IQCK+CMQTFICTTSE KC+EHAEA+HPK+D+Y CFPHL+
Sbjct: 129 KQKAGSKGSQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPKSDVYACFPHLQK 308
Query: 355 * 357
*
Sbjct: 309 * 311
Score = 34.1 bits (68), Expect(2) = 3e-032
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +1 / +3
Query: 127 GGGNAQKSKMARERNAEKNKGG 192
G N Q++KMARE+N EK K G
Sbjct: 78 GKRNGQRAKMAREKNLEKQKAG 143
>gb|CV244009.1|CV244009 WS0253.B21_H14 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0253_H14 3', mRNA sequence
Length = 499
Score = 110 bits (234), Expect(2) = 4e-032
Identities = 40/52 (76%), Positives = 48/52 (92%)
Frame = +1 / -1
Query: 202 QLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEARHPKNDLYQCFPHLKN* 357
QLE+NKKAM+IQCK+CMQTFICTTSE KC+EHAEA+HPK+D+ CFPHL+ *
Sbjct: 352 QLESNKKAMSIQCKVCMQTFICTTSEVKCREHAEAKHPKSDVNTCFPHLQK* 197
Score = 47.8 bits (98), Expect(2) = 4e-032
Identities = 19/38 (50%), Positives = 23/38 (60%)
Frame = +1 / -2
Query: 109 QDSAAMGGGNAQKSKMARERNAEKNKGGKGSQLEANKK 222
Q MGGGN QK+KMARE+N EK K G + +K
Sbjct: 444 QKKKTMGGGNGQKAKMAREKNLEKQKAGSKASSNQTRK 331
>gb|CV227320.1|CV227320 WS0166.B21_N11 PT-DX-A-7 Populus trichocarpa cDNA clone WS0166_N11
3', mRNA sequence
Length = 369
Score = 129 bits (277), Expect = 1e-029
Identities = 49/77 (63%), Positives = 59/77 (76%)
Frame = +1 / +2
Query: 127 GGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEA 306
GG + + ++ G KGSQLEANKKAM+IQCK+CMQTFICTTSE KC+EHAEA
Sbjct: 11 GGNGQKAKMVRERNLDKQKAGSKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEA 190
Query: 307 RHPKNDLYQCFPHLKN* 357
+HPK+D+Y CFPHLK *
Sbjct: 191 KHPKSDVYACFPHLKK* 241
>gb|AJ774612.1|AJ774612 AJ774612 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300022D02F1, mRNA sequence
Length = 494
Score = 129 bits (276), Expect = 2e-029
Identities = 50/81 (61%), Positives = 59/81 (72%)
Frame = +1 / +2
Query: 127 GGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEA 306
GG + ++ G KGSQLEANKKAM+IQCK+CMQTFICTTSE KC+EHAEA
Sbjct: 83 GGNGQKAKMARERNLDKQKAGSKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEA 262
Query: 307 RHPKNDLYQCFPHLKN**AAE 369
+HPK+D+Y CFPHLK * E
Sbjct: 263 KHPKSDVYACFPHLKK*SVGE 325
>gb|AJ778430.1|AJ778430 AJ778430 Populus euphratica cambium 3-6 months Populus euphratica
cDNA clone P0000500004D08F1, mRNA sequence
Length = 579
Score = 129 bits (276), Expect = 2e-029
Identities = 50/81 (61%), Positives = 59/81 (72%)
Frame = +1 / +1
Query: 127 GGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEA 306
GG + ++ G KGSQLEANKKAM+IQCK+CMQTFICTTSE KC+EHAEA
Sbjct: 58 GGNGQKAKMARERNLDKQKAGSKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEA 237
Query: 307 RHPKNDLYQCFPHLKN**AAE 369
+HPK+D+Y CFPHLK * E
Sbjct: 238 KHPKSDVYACFPHLKK*SVGE 300
>gb|BI130272.1|BI130272 G103P22Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 455
Score = 128 bits (275), Expect = 2e-029
Identities = 49/77 (63%), Positives = 58/77 (75%)
Frame = +1 / -3
Query: 127 GGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEA 306
GG + ++ G KGSQLEANKKAM+IQCK+CMQTFICTTSE KC+EHAEA
Sbjct: 396 GGNGQKAKMARERNLDKQKAGSKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEA 217
Query: 307 RHPKNDLYQCFPHLKN* 357
+HPK+D+Y CFPHLK *
Sbjct: 216 KHPKSDVYACFPHLKK* 166
>gb|BI130315.1|BI130315 G103P75Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 474
Score = 128 bits (275), Expect = 2e-029
Identities = 49/77 (63%), Positives = 58/77 (75%)
Frame = +1 / -3
Query: 127 GGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEA 306
GG + ++ G KGSQLEANKKAM+IQCK+CMQTFICTTSE KC+EHAEA
Sbjct: 418 GGNGQKAKMARERNLDKQKAGSKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEA 239
Query: 307 RHPKNDLYQCFPHLKN* 357
+HPK+D+Y CFPHLK *
Sbjct: 238 KHPKSDVYACFPHLKK* 188
>gb|BU813569.1|BU813569 N012A05 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 516
Score = 128 bits (275), Expect = 2e-029
Identities = 49/77 (63%), Positives = 58/77 (75%)
Frame = +1 / +3
Query: 127 GGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEA 306
GG + ++ G KGSQLEANKKAM+IQCK+CMQTFICTTSE KC+EHAEA
Sbjct: 111 GGNGQKAKMARERNLDKQKAGSKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEA 290
Query: 307 RHPKNDLYQCFPHLKN* 357
+HPK+D+Y CFPHLK *
Sbjct: 291 KHPKSDVYACFPHLKK* 341
>gb|BU833717.1|BU833717 T051F06 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 507
Score = 128 bits (275), Expect = 2e-029
Identities = 49/77 (63%), Positives = 58/77 (75%)
Frame = +1 / +1
Query: 127 GGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEA 306
GG + ++ G KGSQLEANKKAM+IQCK+CMQTFICTTSE KC+EHAEA
Sbjct: 91 GGNGQKAKMARERNLDKQKAGSKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEA 270
Query: 307 RHPKNDLYQCFPHLKN* 357
+HPK+D+Y CFPHLK *
Sbjct: 271 KHPKSDVYACFPHLKK* 321
>gb|BU863289.1|BU863289 S026C11 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 447
Score = 128 bits (275), Expect = 2e-029
Identities = 49/77 (63%), Positives = 58/77 (75%)
Frame = +1 / +2
Query: 127 GGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEA 306
GG + ++ G KGSQLEANKKAM+IQCK+CMQTFICTTSE KC+EHAEA
Sbjct: 98 GGNGQKAKMARERNLDKQKAGSKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEA 277
Query: 307 RHPKNDLYQCFPHLKN* 357
+HPK+D+Y CFPHLK *
Sbjct: 278 KHPKSDVYACFPHLKK* 328
>gb|BU890366.1|BU890366 P035G06 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 483
Score = 128 bits (275), Expect = 2e-029
Identities = 49/77 (63%), Positives = 58/77 (75%)
Frame = +1 / +3
Query: 127 GGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEA 306
GG + ++ G KGSQLEANKKAM+IQCK+CMQTFICTTSE KC+EHAEA
Sbjct: 93 GGNGQKAKMARERNLDKQKAGSKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEA 272
Query: 307 RHPKNDLYQCFPHLKN* 357
+HPK+D+Y CFPHLK *
Sbjct: 273 KHPKSDVYACFPHLKK* 323
>gb|CF229021.1|CF229021 PtaXM0020B9B0903 Poplar cDNA library from mature xylem Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 465
Score = 128 bits (275), Expect = 2e-029
Identities = 49/77 (63%), Positives = 58/77 (75%)
Frame = +1 / +2
Query: 127 GGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEA 306
GG + ++ G KGSQLEANKKAM+IQCK+CMQTFICTTSE KC+EHAEA
Sbjct: 101 GGNGQKAKMARERNLDKQKAGSKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEA 280
Query: 307 RHPKNDLYQCFPHLKN* 357
+HPK+D+Y CFPHLK *
Sbjct: 281 KHPKSDVYACFPHLKK* 331
>gb|CF229919.1|CF229919 PtaC0001E3E0309 Poplar cDNA library from cambial zone Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 504
Score = 128 bits (275), Expect = 2e-029
Identities = 49/77 (63%), Positives = 58/77 (75%)
Frame = +1 / +1
Query: 127 GGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEA 306
GG + ++ G KGSQLEANKKAM+IQCK+CMQTFICTTSE KC+EHAEA
Sbjct: 100 GGNGQKAKMARERNLDKQKAGSKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEA 279
Query: 307 RHPKNDLYQCFPHLKN* 357
+HPK+D+Y CFPHLK *
Sbjct: 280 KHPKSDVYACFPHLKK* 330
>gb|CF232941.1|CF232941 PtaJXO0017E7E0709 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 505
Score = 128 bits (275), Expect = 2e-029
Identities = 49/77 (63%), Positives = 58/77 (75%)
Frame = +1 / +1
Query: 127 GGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEA 306
GG + ++ G KGSQLEANKKAM+IQCK+CMQTFICTTSE KC+EHAEA
Sbjct: 100 GGNGQKAKMARERNLDKQKAGSKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEA 279
Query: 307 RHPKNDLYQCFPHLKN* 357
+HPK+D+Y CFPHLK *
Sbjct: 280 KHPKSDVYACFPHLKK* 330
>gb|CF235076.1|CF235076 PtaJXT0018F12F1212 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 432
Score = 128 bits (275), Expect = 2e-029
Identities = 49/77 (63%), Positives = 58/77 (75%)
Frame = +1 / +3
Query: 127 GGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEA 306
GG + ++ G KGSQLEANKKAM+IQCK+CMQTFICTTSE KC+EHAEA
Sbjct: 15 GGNGQKAKMARERNLDKQKAGSKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEA 194
Query: 307 RHPKNDLYQCFPHLKN* 357
+HPK+D+Y CFPHLK *
Sbjct: 195 KHPKSDVYACFPHLKK* 245
>gb|CK091358.1|CK091358 F085P40.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F085P40 3', mRNA sequence
Length = 645
Score = 128 bits (275), Expect = 2e-029
Identities = 49/77 (63%), Positives = 58/77 (75%)
Frame = +1 / -1
Query: 127 GGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEA 306
GG + ++ G KGSQLEANKKAM+IQCK+CMQTFICTTSE KC+EHAEA
Sbjct: 357 GGNGQKAKMARERNLDKQKAGSKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEA 178
Query: 307 RHPKNDLYQCFPHLKN* 357
+HPK+D+Y CFPHLK *
Sbjct: 177 KHPKSDVYACFPHLKK* 127
>gb|CV235555.1|CV235555 WS0122.B21_J15 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0122_J15 3', mRNA sequence
Length = 533
Score = 128 bits (275), Expect = 2e-029
Identities = 49/77 (63%), Positives = 58/77 (75%)
Frame = +1 / -1
Query: 127 GGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEA 306
GG + ++ G KGSQLEANKKAM+IQCK+CMQTFICTTSE KC+EHAEA
Sbjct: 407 GGNGQKAKMARERNLDKQKAGSKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEA 228
Query: 307 RHPKNDLYQCFPHLKN* 357
+HPK+D+Y CFPHLK *
Sbjct: 227 KHPKSDVYACFPHLKK* 177
>gb|CV246233.1|CV246233 WS0111.B21_L13 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0111_L13 3', mRNA sequence
Length = 545
Score = 128 bits (275), Expect = 2e-029
Identities = 49/77 (63%), Positives = 58/77 (75%)
Frame = +1 / -2
Query: 127 GGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEA 306
GG + ++ G KGSQLEANKKAM+IQCK+CMQTFICTTSE KC+EHAEA
Sbjct: 418 GGNGQKAKMARERNLDKQKAGSKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEA 239
Query: 307 RHPKNDLYQCFPHLKN* 357
+HPK+D+Y CFPHLK *
Sbjct: 238 KHPKSDVYACFPHLKK* 188
>gb|CV246433.1|CV246433 WS01110.B21_H12 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01110_H12 3', mRNA sequence
Length = 546
Score = 128 bits (275), Expect = 2e-029
Identities = 49/77 (63%), Positives = 58/77 (75%)
Frame = +1 / -3
Query: 127 GGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEA 306
GG + ++ G KGSQLEANKKAM+IQCK+CMQTFICTTSE KC+EHAEA
Sbjct: 418 GGNGQKAKMARERNLDKQKAGSKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEA 239
Query: 307 RHPKNDLYQCFPHLKN* 357
+HPK+D+Y CFPHLK *
Sbjct: 238 KHPKSDVYACFPHLKK* 188
>gb|CV247516.1|CV247516 WS01118.B21_G23 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01118_G23 3', mRNA sequence
Length = 553
Score = 128 bits (275), Expect = 2e-029
Identities = 49/77 (63%), Positives = 58/77 (75%)
Frame = +1 / -1
Query: 127 GGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEA 306
GG + ++ G KGSQLEANKKAM+IQCK+CMQTFICTTSE KC+EHAEA
Sbjct: 427 GGNGQKAKMARERNLDKQKAGSKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEA 248
Query: 307 RHPKNDLYQCFPHLKN* 357
+HPK+D+Y CFPHLK *
Sbjct: 247 KHPKSDVYACFPHLKK* 197
>gb|CV247654.1|CV247654 WS01118.B21_O04 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01118_O04 3', mRNA sequence
Length = 534
Score = 128 bits (275), Expect = 2e-029
Identities = 49/77 (63%), Positives = 58/77 (75%)
Frame = +1 / -3
Query: 127 GGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEA 306
GG + ++ G KGSQLEANKKAM+IQCK+CMQTFICTTSE KC+EHAEA
Sbjct: 406 GGNGQKAKMARERNLDKQKAGSKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEA 227
Query: 307 RHPKNDLYQCFPHLKN* 357
+HPK+D+Y CFPHLK *
Sbjct: 226 KHPKSDVYACFPHLKK* 176
>gb|CV251812.1|CV251812 WS0118.B21_D07 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0118_D07 3', mRNA sequence
Length = 534
Score = 128 bits (275), Expect = 2e-029
Identities = 49/77 (63%), Positives = 58/77 (75%)
Frame = +1 / -2
Query: 127 GGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEA 306
GG + ++ G KGSQLEANKKAM+IQCK+CMQTFICTTSE KC+EHAEA
Sbjct: 407 GGNGQKAKMARERNLDKQKAGSKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEA 228
Query: 307 RHPKNDLYQCFPHLKN* 357
+HPK+D+Y CFPHLK *
Sbjct: 227 KHPKSDVYACFPHLKK* 177
>gb|CV252203.1|CV252203 WS0119.B21_N23 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0119_N23 3', mRNA sequence
Length = 524
Score = 128 bits (275), Expect = 2e-029
Identities = 49/77 (63%), Positives = 58/77 (75%)
Frame = +1 / -3
Query: 127 GGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEA 306
GG + ++ G KGSQLEANKKAM+IQCK+CMQTFICTTSE KC+EHAEA
Sbjct: 447 GGNGQKAKMARERNLDKQKAGSKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEA 268
Query: 307 RHPKNDLYQCFPHLKN* 357
+HPK+D+Y CFPHLK *
Sbjct: 267 KHPKSDVYACFPHLKK* 217
>gb|CV267229.1|CV267229 WS02031.B21_C23 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02031_C23 3', mRNA sequence
Length = 947
Score = 128 bits (275), Expect = 2e-029
Identities = 49/77 (63%), Positives = 58/77 (75%)
Frame = +1 / -1
Query: 127 GGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEA 306
GG + ++ G KGSQLEANKKAM+IQCK+CMQTFICTTSE KC+EHAEA
Sbjct: 917 GGNGQKAKMARERNLDKQKAGSKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEA 738
Query: 307 RHPKNDLYQCFPHLKN* 357
+HPK+D+Y CFPHLK *
Sbjct: 737 KHPKSDVYACFPHLKK* 687
>gb|CV273980.1|CV273980 WS01712.B21_N02 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS01712_N02 3', mRNA sequence
Length = 531
Score = 128 bits (275), Expect = 2e-029
Identities = 49/77 (63%), Positives = 58/77 (75%)
Frame = +1 / -1
Query: 127 GGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEA 306
GG + ++ G KGSQLEANKKAM+IQCK+CMQTFICTTSE KC+EHAEA
Sbjct: 423 GGNGQKAKMARERNLDKQKAGSKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEA 244
Query: 307 RHPKNDLYQCFPHLKN* 357
+HPK+D+Y CFPHLK *
Sbjct: 243 KHPKSDVYACFPHLKK* 193
>gb|DT471950.1|DT471950 WS0122.BR_J15 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0122_J15 5', mRNA sequence
Length = 502
Score = 128 bits (275), Expect = 2e-029
Identities = 49/77 (63%), Positives = 58/77 (75%)
Frame = +1 / +1
Query: 127 GGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEA 306
GG + ++ G KGSQLEANKKAM+IQCK+CMQTFICTTSE KC+EHAEA
Sbjct: 97 GGNGQKAKMARERNLDKQKAGSKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEA 276
Query: 307 RHPKNDLYQCFPHLKN* 357
+HPK+D+Y CFPHLK *
Sbjct: 277 KHPKSDVYACFPHLKK* 327
>gb|DT493557.1|DT493557 WS0111.BR_L13 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0111_L13
5', mRNA sequence
Length = 514
Score = 128 bits (275), Expect = 2e-029
Identities = 49/77 (63%), Positives = 58/77 (75%)
Frame = +1 / +1
Query: 127 GGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEA 306
GG + ++ G KGSQLEANKKAM+IQCK+CMQTFICTTSE KC+EHAEA
Sbjct: 97 GGNGQKAKMARERNLDKQKAGSKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEA 276
Query: 307 RHPKNDLYQCFPHLKN* 357
+HPK+D+Y CFPHLK *
Sbjct: 277 KHPKSDVYACFPHLKK* 327
>gb|DT493796.1|DT493796 WS01116.BR_H17 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01116_H17 5', mRNA sequence
Length = 510
Score = 128 bits (275), Expect = 2e-029
Identities = 49/77 (63%), Positives = 58/77 (75%)
Frame = +1 / +3
Query: 127 GGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEA 306
GG + ++ G KGSQLEANKKAM+IQCK+CMQTFICTTSE KC+EHAEA
Sbjct: 99 GGNGQKAKMARERNLDKQKAGSKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEA 278
Query: 307 RHPKNDLYQCFPHLKN* 357
+HPK+D+Y CFPHLK *
Sbjct: 279 KHPKSDVYACFPHLKK* 329
>gb|DT494440.1|DT494440 WS01118.BR.1_G23 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01118_G23 5', mRNA sequence
Length = 522
Score = 128 bits (275), Expect = 2e-029
Identities = 49/77 (63%), Positives = 58/77 (75%)
Frame = +1 / +3
Query: 127 GGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEA 306
GG + ++ G KGSQLEANKKAM+IQCK+CMQTFICTTSE KC+EHAEA
Sbjct: 96 GGNGQKAKMARERNLDKQKAGSKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEA 275
Query: 307 RHPKNDLYQCFPHLKN* 357
+HPK+D+Y CFPHLK *
Sbjct: 276 KHPKSDVYACFPHLKK* 326
>gb|DT494596.1|DT494596 WS01118.BR.1_O04 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01118_O04 5', mRNA sequence
Length = 503
Score = 128 bits (275), Expect = 2e-029
Identities = 49/77 (63%), Positives = 58/77 (75%)
Frame = +1 / +1
Query: 127 GGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEA 306
GG + ++ G KGSQLEANKKAM+IQCK+CMQTFICTTSE KC+EHAEA
Sbjct: 97 GGNGQKAKMARERNLDKQKAGSKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEA 276
Query: 307 RHPKNDLYQCFPHLKN* 357
+HPK+D+Y CFPHLK *
Sbjct: 277 KHPKSDVYACFPHLKK* 327
>gb|DT497615.1|DT497615 WS01126.BR_P20 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01126_P20 5', mRNA sequence
Length = 507
Score = 128 bits (275), Expect = 2e-029
Identities = 49/77 (63%), Positives = 58/77 (75%)
Frame = +1 / +2
Query: 127 GGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEA 306
GG + ++ G KGSQLEANKKAM+IQCK+CMQTFICTTSE KC+EHAEA
Sbjct: 101 GGNGQKAKMARERNLDKQKAGSKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEA 280
Query: 307 RHPKNDLYQCFPHLKN* 357
+HPK+D+Y CFPHLK *
Sbjct: 281 KHPKSDVYACFPHLKK* 331
>gb|DT498363.1|DT498363 WS0115.BR_C08 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0115_C08
5', mRNA sequence
Length = 504
Score = 128 bits (275), Expect = 2e-029
Identities = 49/77 (63%), Positives = 58/77 (75%)
Frame = +1 / +2
Query: 127 GGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEA 306
GG + ++ G KGSQLEANKKAM+IQCK+CMQTFICTTSE KC+EHAEA
Sbjct: 98 GGNGQKAKMARERNLDKQKAGSKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEA 277
Query: 307 RHPKNDLYQCFPHLKN* 357
+HPK+D+Y CFPHLK *
Sbjct: 278 KHPKSDVYACFPHLKK* 328
>gb|DT499400.1|DT499400 WS0118.BR_D07 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0118_D07
5', mRNA sequence
Length = 503
Score = 128 bits (275), Expect = 2e-029
Identities = 49/77 (63%), Positives = 58/77 (75%)
Frame = +1 / +1
Query: 127 GGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEA 306
GG + ++ G KGSQLEANKKAM+IQCK+CMQTFICTTSE KC+EHAEA
Sbjct: 97 GGNGQKAKMARERNLDKQKAGSKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEA 276
Query: 307 RHPKNDLYQCFPHLKN* 357
+HPK+D+Y CFPHLK *
Sbjct: 277 KHPKSDVYACFPHLKK* 327
>gb|BU827803.1|BU827803 K009P23P Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 421
Score = 128 bits (274), Expect = 3e-029
Identities = 49/77 (63%), Positives = 58/77 (75%)
Frame = +1 / +3
Query: 127 GGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEA 306
GG + ++ G KGSQLEANKKAM+IQCK+CMQTFICTTSE KC+EHAEA
Sbjct: 63 GGNGQKAKMARERNLDKQKAGSKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEA 242
Query: 307 RHPKNDLYQCFPHLKN* 357
+HPK+D+Y CFPHLK *
Sbjct: 243 KHPKSDVYGCFPHLKK* 293
>gb|BU820005.1|BU820005 UA50BPB12 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 472
Score = 127 bits (272), Expect = 6e-029
Identities = 47/77 (61%), Positives = 60/77 (77%)
Frame = +1 / +2
Query: 127 GGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEA 306
GG + + + ++ G KGSQLE+NKKAM+IQCK+CMQTFICTTSE KC+EHAEA
Sbjct: 77 GGNGQKAKMVREKNLEKQKAGSKGSQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAEA 256
Query: 307 RHPKNDLYQCFPHLKN* 357
+HPK+D+Y CFPHL+ *
Sbjct: 257 KHPKSDVYACFPHLQK* 307
>gb|AJ770904.1|AJ770904 AJ770904 Populus euphratica shoot in vitro plantlet China Populus
euphratica cDNA clone P0001200001H09F1, mRNA sequence
Length = 479
Score = 127 bits (272), Expect = 6e-029
Identities = 49/81 (60%), Positives = 59/81 (72%)
Frame = +1 / +1
Query: 127 GGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEA 306
GG + ++ G KGSQLEANKKA++IQCK+CMQTFICTTSE KC+EHAEA
Sbjct: 79 GGNGQKAKMARERNLDKQKAGSKGSQLEANKKAISIQCKVCMQTFICTTSEVKCREHAEA 258
Query: 307 RHPKNDLYQCFPHLKN**AAE 369
+HPK+D+Y CFPHLK * E
Sbjct: 259 KHPKSDVYACFPHLKK*SVGE 321
>gb|CF231313.1|CF231313 PtaC0019H7H0715 Poplar cDNA library from cambial zone Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 555
Score = 127 bits (271), Expect = 8e-029
Identities = 47/77 (61%), Positives = 59/77 (76%)
Frame = +1 / +3
Query: 127 GGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEA 306
GG + + ++ G KGSQLE+NKKAM+IQCK+CMQTFICTTSE KC+EHAEA
Sbjct: 159 GGNGQKAKMAREKNLXKQKAGSKGSQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAEA 338
Query: 307 RHPKNDLYQCFPHLKN* 357
+HPK+D+Y CFPHL+ *
Sbjct: 339 KHPKSDVYACFPHLQK* 389
>gb|CV267638.1|CV267638 WS02032.B21_E18 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02032_E18 3', mRNA sequence
Length = 702
Score = 127 bits (271), Expect = 8e-029
Identities = 49/77 (63%), Positives = 57/77 (74%)
Frame = +1 / -2
Query: 127 GGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEA 306
GG + ++ G KGSQLEANKKAM+IQCK+CMQTFICTTSE KC+EHAEA
Sbjct: 458 GGNGQKAKMARERNLDKQKAGSKGSQLEANKKAMSIQCKVCMQTFICTTSEVKCREHAEA 279
Query: 307 RHPKNDLYQCFPHLKN* 357
+HPK D+Y CFPHLK *
Sbjct: 278 KHPKFDVYACFPHLKK* 228
>gb|BU815949.1|BU815949 N058C02 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 544
Score = 126 bits (270), Expect = 1e-028
Identities = 47/77 (61%), Positives = 59/77 (76%)
Frame = +1 / +1
Query: 127 GGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEA 306
GG + + ++ G KGSQLE+NKKAM+IQCK+CMQTFICTTSE KC+EHAEA
Sbjct: 133 GGNGQKAKMAREKNLEKQKAGSKGSQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAEA 312
Query: 307 RHPKNDLYQCFPHLKN* 357
+HPK+D+Y CFPHL+ *
Sbjct: 313 KHPKSDVYACFPHLQK* 363
>gb|BU819827.1|BU819827 UA48BPB01 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 557
Score = 126 bits (270), Expect = 1e-028
Identities = 47/77 (61%), Positives = 59/77 (76%)
Frame = +1 / +3
Query: 127 GGGNAQKSKMARERNAEKNKGGKGSQLEANKKAMNIQCKICMQTFICTTSEAKCKEHAEA 306
GG + + ++ G KGSQLE+NKKAM+IQCK+CMQTFICTTSE KC+EHAEA
Sbjct: 159 GGNGQKAKMAREKNLEKQKAGSKGSQLESNKKAMSIQCKVCMQTFICTTSEVKCREHAEA 338
Query: 307 RHPKNDLYQCFPHLKN* 357
+HPK+D+Y CFPHL+ *
Sbjct: 339 KHPKSDVYACFPHLQK* 389
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 240,240,876
Number of Sequences: 369679
Number of extensions: 2926209
Number of successful extensions: 50955
Number of sequences better than 1.0e-020: 141
length of database: 67,802,888
effective HSP length: 51
effective length of database: 48,949,259
effective search space used: 7489236627
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)