TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2594433.2.1
(766 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DN487923.1|DN487923 R016C04.3pR Populus root cDNA librar... 180 5e-068
gb|DN489856.1|DN489856 T086B12.3pR Populus shoot meristem c... 177 6e-067
gb|DN499780.1|DN499780 T086B12.5pR Populus shoot meristem c... 177 6e-067
gb|BU831998.1|BU831998 T028C05 Populus apical shoot cDNA li... 177 8e-063
gb|DT519931.1|DT519931 WS02446.B21.1_B10 PTxD-ICC-N-A-14 Po... 133 8e-053
gb|CV235788.1|CV235788 WS01221.B21_J06 PT-GT-FL-A-3 Populus... 206 1e-052
gb|DT469656.1|DT469656 WS01918.C21_H17 PT-DX-N-A-10 Populus... 202 3e-051
gb|DT496637.1|DT496637 WS01123.BR_P16 PT-P-FL-A-2 Populus t... 199 1e-050
gb|CV249391.1|CV249391 WS01123.B21_P16 PT-P-FL-A-2 Populus ... 188 4e-047
gb|BU836407.1|BU836407 T086B12 Populus apical shoot cDNA li... 163 1e-039
gb|BU834047.1|BU834047 T056A04 Populus apical shoot cDNA li... 73 2e-028
>gb|DN487923.1|DN487923 R016C04.3pR Populus root cDNA library Populus tremula x Populus
tremuloides cDNA clone R016C04 3', mRNA sequence
Length = 754
Score = 180 bits (387), Expect(2) = 5e-068
Identities = 66/87 (75%), Positives = 76/87 (87%)
Frame = -1 / -2
Query: 736 LKPDQNMWYRACKTCNKKVTETFGSGYWCEGCQKNDSECSLRYIMVVKVSDPTGEAWVSV 557
+KPDQ MWYRACKTCNKKVT+ G GYWCEGCQKND+ECSLRYIMVVKVSD +GE WVS
Sbjct: 678 IKPDQPMWYRACKTCNKKVTDALGGGYWCEGCQKNDAECSLRYIMVVKVSDASGEGWVSA 499
Query: 556 FNEHAEKIIGCSADELDRIRKEEGDDS 476
FNE AEKIIGCSADELD ++ + G+++
Sbjct: 498 FNEEAEKIIGCSADELDLLKSQIGEEN 418
Score = 134 bits (287), Expect(2) = 2e-046
Identities = 54/73 (73%), Positives = 58/73 (79%)
Frame = +3 / +2
Query: 525 QPMIFSACSLNTETHASPVGSETLTTMMYLSEHSESFFWHPSHQYPDPKVSVTFLLQVLQ 704
QPMIFSA SLN ET SP+ SET TT+MYL HS SFFWHPSHQYP P+ SVTFLL VLQ
Sbjct: 467 QPMIFSASSLNAETQPSPLASETFTTIMYLKLHSASFFWHPSHQYPPPRASVTFLLHVLQ 646
Query: 705 ARYHMFWSGLXGL 743
ARYH+ WSGL L
Sbjct: 647 ARYHIGWSGLMKL 685
Score = 98.2 bits (208), Expect(2) = 5e-068
Identities = 37/59 (62%), Positives = 53/59 (89%)
Frame = -1 / -2
Query: 484 DDSYALKLKEATWVPHLFRVSVTQHEYNNEKRQRITVRSEAPVEHAAESKYLLEQIAKL 308
+++Y +LKEATW PHL R+SV+Q+EYNNEKRQR+TV++ APV+ AAES++LLE+I+K+
Sbjct: 423 ENTYQQRLKEATWNPHLLRISVSQNEYNNEKRQRMTVKAVAPVDFAAESRFLLEEISKM 247
Score = 72.1 bits (151), Expect(2) = 2e-046
Identities = 37/57 (64%), Positives = 41/57 (71%)
Frame = +3 / +2
Query: 294 Y*QAVSFAICSSRYLDSAACSTGASLLTVILCLFSLLYSCCVTLTRNR*GTQVASLS 464
Y*+ F I SS+ LDSAA STGA+ LTVILCLFSLLYS TL R*G QVAS +
Sbjct: 233 Y*EPFIFEISSSKNLDSAAKSTGATALTVILCLFSLLYSFWETLILKR*GFQVASFN 403
>gb|DN489856.1|DN489856 T086B12.3pR Populus shoot meristem cDNA library Populus tremula x
Populus tremuloides cDNA clone T086B12 3', mRNA sequence
Length = 788
Score = 177 bits (380), Expect(2) = 6e-067
Identities = 65/87 (74%), Positives = 75/87 (86%)
Frame = -1 / -1
Query: 736 LKPDQNMWYRACKTCNKKVTETFGSGYWCEGCQKNDSECSLRYIMVVKVSDPTGEAWVSV 557
+KPDQ MWYRACKTCNKKVT+ G GYWCEGCQKND+ECSLRYIMVVKVSD +GE WVS
Sbjct: 653 IKPDQTMWYRACKTCNKKVTDALGGGYWCEGCQKNDAECSLRYIMVVKVSDASGEGWVSA 474
Query: 556 FNEHAEKIIGCSADELDRIRKEEGDDS 476
FNE AEKII CSADELD ++ + G+++
Sbjct: 473 FNEEAEKIICCSADELDLLKSQIGEEN 393
Score = 131 bits (281), Expect(2) = 4e-045
Identities = 53/73 (72%), Positives = 57/73 (78%)
Frame = +3 / +1
Query: 525 QPMIFSACSLNTETHASPVGSETLTTMMYLSEHSESFFWHPSHQYPDPKVSVTFLLQVLQ 704
Q MIFSA SLN ET SP+ SET TT+MYL HS SFFWHPSHQYP P+ SVTFLL VLQ
Sbjct: 442 QQMIFSASSLNAETQPSPLASETFTTIMYLKLHSASFFWHPSHQYPPPRASVTFLLHVLQ 621
Query: 705 ARYHMFWSGLXGL 743
ARYH+ WSGL L
Sbjct: 622 ARYHIVWSGLMKL 660
Score = 97.7 bits (207), Expect(2) = 6e-067
Identities = 37/59 (62%), Positives = 52/59 (88%)
Frame = -1 / -1
Query: 484 DDSYALKLKEATWVPHLFRVSVTQHEYNNEKRQRITVRSEAPVEHAAESKYLLEQIAKL 308
+++Y +LKEATW PHL R+SV+Q+EYNNEKRQR+TVR+ APV+ AES++LLE+I+K+
Sbjct: 398 ENTYQQRLKEATWNPHLLRISVSQNEYNNEKRQRMTVRAVAPVDFVAESRFLLEEISKM 222
Score = 73.0 bits (153), Expect(2) = 2e-021
Identities = 32/77 (41%), Positives = 46/77 (59%)
Frame = +2 / +3
Query: 506 IKLVGAAANDLLCMLVEHRDPCLASRIGDLDDHDVSQ*AFRVILLASLAPVSRSKSFSHL 685
+K + A NDL +E R+P L +RI + H+V A +ILLAS P+S +S S+
Sbjct: 423 VKFISRATNDLFSFFIECRNPTLTTRIRNFYHHNVP*AALCIILLASFTPISTPQSISNF 602
Query: 686 LVAGLASTVPHVLVRLE 736
+A LAS +PH LVR +
Sbjct: 603 FIARLASPIPHCLVRFD 653
Score = 70.3 bits (147), Expect(2) = 4e-045
Identities = 36/57 (63%), Positives = 40/57 (70%)
Frame = +3 / +1
Query: 294 Y*QAVSFAICSSRYLDSAACSTGASLLTVILCLFSLLYSCCVTLTRNR*GTQVASLS 464
Y*+ F I SS+ LDSA STGA+ LTVILCLFSLLYS TL R*G QVAS +
Sbjct: 208 Y*EPFIFEISSSKNLDSATKSTGATALTVILCLFSLLYSFWETLILKR*GFQVASFN 378
Score = 49.6 bits (102), Expect(2) = 2e-021
Identities = 25/73 (34%), Positives = 39/73 (53%)
Frame = +2 / +3
Query: 266 NEPPERLHLLLASSKLRYLFKQVLGFSCVLDRRFTPHSDSLPFLVIVFMLCDADAEQVRN 445
N+ +LL + L LFKQ G ++ +PH LP LVIV +L D D++++R
Sbjct: 180 NQTKPHPSILLRTFHL*NLFKQKSGLGNKINWSNSPHCHPLPLLVIVLVLGDTDSQKMRI 359
Query: 446 PGGFLELQSITVV 484
P GF + + V+
Sbjct: 360 PSGFFQSLLVRVL 398
>gb|DN499780.1|DN499780 T086B12.5pR Populus shoot meristem cDNA library Populus tremula x
Populus tremuloides cDNA clone T086B12 5', mRNA sequence
Length = 752
Score = 177 bits (380), Expect(2) = 6e-067
Identities = 65/87 (74%), Positives = 75/87 (86%)
Frame = -1 / +3
Query: 736 LKPDQNMWYRACKTCNKKVTETFGSGYWCEGCQKNDSECSLRYIMVVKVSDPTGEAWVSV 557
+KPDQ MWYRACKTCNKKVT+ G GYWCEGCQKND+ECSLRYIMVVKVSD +GE WVS
Sbjct: 213 IKPDQTMWYRACKTCNKKVTDALGGGYWCEGCQKNDAECSLRYIMVVKVSDASGEGWVSA 392
Query: 556 FNEHAEKIIGCSADELDRIRKEEGDDS 476
FNE AEKII CSADELD ++ + G+++
Sbjct: 393 FNEEAEKIICCSADELDLLKSQIGEEN 473
Score = 131 bits (281), Expect(2) = 4e-045
Identities = 53/73 (72%), Positives = 57/73 (78%)
Frame = +3 / -2
Query: 525 QPMIFSACSLNTETHASPVGSETLTTMMYLSEHSESFFWHPSHQYPDPKVSVTFLLQVLQ 704
Q MIFSA SLN ET SP+ SET TT+MYL HS SFFWHPSHQYP P+ SVTFLL VLQ
Sbjct: 424 QQMIFSASSLNAETQPSPLASETFTTIMYLKLHSASFFWHPSHQYPPPRASVTFLLHVLQ 245
Query: 705 ARYHMFWSGLXGL 743
ARYH+ WSGL L
Sbjct: 244 ARYHIVWSGLMKL 206
Score = 97.7 bits (207), Expect(2) = 6e-067
Identities = 37/59 (62%), Positives = 52/59 (88%)
Frame = -1 / +3
Query: 484 DDSYALKLKEATWVPHLFRVSVTQHEYNNEKRQRITVRSEAPVEHAAESKYLLEQIAKL 308
+++Y +LKEATW PHL R+SV+Q+EYNNEKRQR+TVR+ APV+ AES++LLE+I+K+
Sbjct: 468 ENTYQQRLKEATWNPHLLRISVSQNEYNNEKRQRMTVRAVAPVDFVAESRFLLEEISKM 644
Score = 73.0 bits (153), Expect(2) = 2e-021
Identities = 32/77 (41%), Positives = 46/77 (59%)
Frame = +2 / -1
Query: 506 IKLVGAAANDLLCMLVEHRDPCLASRIGDLDDHDVSQ*AFRVILLASLAPVSRSKSFSHL 685
+K + A NDL +E R+P L +RI + H+V A +ILLAS P+S +S S+
Sbjct: 443 VKFISRATNDLFSFFIECRNPTLTTRIRNFYHHNVP*AALCIILLASFTPISTPQSISNF 264
Query: 686 LVAGLASTVPHVLVRLE 736
+A LAS +PH LVR +
Sbjct: 263 FIARLASPIPHCLVRFD 213
Score = 70.3 bits (147), Expect(2) = 4e-045
Identities = 36/57 (63%), Positives = 40/57 (70%)
Frame = +3 / -2
Query: 294 Y*QAVSFAICSSRYLDSAACSTGASLLTVILCLFSLLYSCCVTLTRNR*GTQVASLS 464
Y*+ F I SS+ LDSA STGA+ LTVILCLFSLLYS TL R*G QVAS +
Sbjct: 658 Y*EPFIFEISSSKNLDSATKSTGATALTVILCLFSLLYSFWETLILKR*GFQVASFN 488
Score = 49.2 bits (101), Expect(2) = 2e-021
Identities = 24/65 (36%), Positives = 37/65 (56%)
Frame = +2 / -1
Query: 290 LLLASSKLRYLFKQVLGFSCVLDRRFTPHSDSLPFLVIVFMLCDADAEQVRNPGGFLELQ 469
+LL + L LFKQ G ++ +PH LP LVIV +L D D++++R P GF +
Sbjct: 662 ILLRTFHL*NLFKQKSGLGNKINWSNSPHCHPLPLLVIVLVLGDTDSQKMRIPSGFFQSL 483
Query: 470 SITVV 484
+ V+
Sbjct: 482 LVRVL 468
>gb|BU831998.1|BU831998 T028C05 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 653
Score = 177 bits (380), Expect(2) = 8e-063
Identities = 65/87 (74%), Positives = 75/87 (86%)
Frame = -1 / +1
Query: 736 LKPDQNMWYRACKTCNKKVTETFGSGYWCEGCQKNDSECSLRYIMVVKVSDPTGEAWVSV 557
+KPDQ MWYRACKTCNKKVT+ G GYWCEGCQKND+ECSLRYIMVVKVSD +GE WVS
Sbjct: 196 IKPDQTMWYRACKTCNKKVTDALGGGYWCEGCQKNDAECSLRYIMVVKVSDASGEGWVSA 375
Query: 556 FNEHAEKIIGCSADELDRIRKEEGDDS 476
FNE AEKII CSADELD ++ + G+++
Sbjct: 376 FNEEAEKIICCSADELDLLKSQIGEEN 456
Score = 131 bits (281), Expect(2) = 2e-043
Identities = 53/73 (72%), Positives = 57/73 (78%)
Frame = +3 / -1
Query: 525 QPMIFSACSLNTETHASPVGSETLTTMMYLSEHSESFFWHPSHQYPDPKVSVTFLLQVLQ 704
Q MIFSA SLN ET SP+ SET TT+MYL HS SFFWHPSHQYP P+ SVTFLL VLQ
Sbjct: 407 QQMIFSASSLNAETQPSPLASETFTTIMYLKLHSASFFWHPSHQYPPPRASVTFLLHVLQ 228
Query: 705 ARYHMFWSGLXGL 743
ARYH+ WSGL L
Sbjct: 227 ARYHIVWSGLMKL 189
Score = 84.0 bits (177), Expect(2) = 8e-063
Identities = 32/51 (62%), Positives = 44/51 (86%)
Frame = -1 / +2
Query: 460 KEATWVPHLFRVSVTQHEYNNEKRQRITVRSEAPVEHAAESKYLLEQIAKL 308
K+ W PHL R+SV+Q+EYNNEKRQR+TVR+ APV+ AES++LLE+I+K+
Sbjct: 476 KKPHWNPHLLRISVSQNEYNNEKRQRMTVRAVAPVDFVAESRFLLEEISKM 628
Score = 64.3 bits (134), Expect(2) = 2e-043
Identities = 33/52 (63%), Positives = 36/52 (69%)
Frame = +3 / -3
Query: 294 Y*QAVSFAICSSRYLDSAACSTGASLLTVILCLFSLLYSCCVTLTRNR*GTQ 449
Y*+ F I SS+ LDSA STGA+ LTVILCLFSLLYS TL R*G Q
Sbjct: 642 Y*EPFIFEISSSKNLDSATKSTGATALTVILCLFSLLYSFWETLILKR*GFQ 487
>gb|DT519931.1|DT519931 WS02446.B21.1_B10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02446_B10 3', mRNA sequence
Length = 782
Score = 133 bits (284), Expect(2) = 8e-053
Identities = 51/72 (70%), Positives = 56/72 (77%)
Frame = -1 / -2
Query: 736 LKPDQNMWYRACKTCNKKVTETFGSGYWCEGCQKNDSECSLRYIMVVKVSDPTGEAWVSV 557
+ P Q MWY ACKT NKKVT G GYWCEGCQKND+ECSLRYI+VVK+SD +GE WVS
Sbjct: 667 ITPVQTMWYPACKTRNKKVTAALGRGYWCEGCQKNDAECSLRYIIVVKLSDGSGEGWVSA 488
Query: 556 FNEHAEKIIGCS 521
NE EKIIG S
Sbjct: 487 LNEEPEKIIGWS 452
Score = 113 bits (242), Expect(2) = 9e-037
Identities = 45/73 (61%), Positives = 55/73 (75%)
Frame = +3 / +3
Query: 525 QPMIFSACSLNTETHASPVGSETLTTMMYLSEHSESFFWHPSHQYPDPKVSVTFLLQVLQ 704
QPMIFS SL+ ET SP+ SE+ TT+MYL HS SFFWHPSHQ P P+ +VTFLL+VL
Sbjct: 456 QPMIFSGSSLSAETQPSPLPSESFTTIMYLKLHSASFFWHPSHQ*PRPRAAVTFLLRVLH 635
Query: 705 ARYHMFWSGLXGL 743
A YH+ W+G+ L
Sbjct: 636 AGYHIVWTGVMKL 674
Score = 94.5 bits (200), Expect(2) = 8e-053
Identities = 35/71 (49%), Positives = 57/71 (80%)
Frame = -1 / -3
Query: 520 ADELDRIRKEEGDDSYALKLKEATWVPHLFRVSVTQHEYNNEKRQRITVRSEAPVEHAAE 341
+DEL ++ + +++Y ++KEATW PHL R+ V+ +EYN+EKRQR+TVR+ APV+ A E
Sbjct: 450 SDELGLLKSQIEENAYQQRVKEATWNPHLLRIRVSHNEYNHEKRQRMTVRAVAPVDSAPE 271
Query: 340 SKYLLEQIAKL 308
S++LLE+++K+
Sbjct: 270 SRFLLEELSKM 238
Score = 60.2 bits (125), Expect(2) = 9e-037
Identities = 33/57 (57%), Positives = 37/57 (64%)
Frame = +3 / +2
Query: 294 Y*QAVSFAICSSRYLDSAACSTGASLLTVILCLFSLLYSCCVTLTRNR*GTQVASLS 464
Y*+ SS+ LDS A STGA+ LTVILCLFS LYS T R*G QVASL+
Sbjct: 224 Y*EPFILESSSSKNLDSGAESTGATALTVILCLFS*LYSLWETRILKR*GFQVASLT 394
>gb|CV235788.1|CV235788 WS01221.B21_J06 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01221_J06 3', mRNA sequence
Length = 617
Score = 206 bits (445), Expect = 1e-052
Identities = 81/116 (69%), Positives = 101/116 (87%)
Frame = -1 / -2
Query: 655 WCEGCQKNDSECSLRYIMVVKVSDPTGEAWVSVFNEHAEKIIGCSADELDRIRKEEGDDS 476
WCEGCQKND+ECSLRYIMVVKVSD +GE WVS FNE AEKIIGCSADELD ++ + +++
Sbjct: 616 WCEGCQKNDAECSLRYIMVVKVSDGSGEGWVSAFNEKAEKIIGCSADELDLLKSQIEENT 437
Query: 475 YALKLKEATWVPHLFRVSVTQHEYNNEKRQRITVRSEAPVEHAAESKYLLEQIAKL 308
+LKEATW PHL R+SV+Q+EYNNEKRQR+TVR+ APV+ AAES++LLE+I+K+
Sbjct: 436 SQQRLKEATWNPHLLRISVSQNEYNNEKRQRMTVRAVAPVDFAAESRFLLEEISKM 269
Score = 82.6 bits (174), Expect(2) = 5e-031
Identities = 33/44 (75%), Positives = 35/44 (79%)
Frame = +3 / +3
Query: 525 QPMIFSACSLNTETHASPVGSETLTTMMYLSEHSESFFWHPSHQ 656
QPMIFSA SLN ET SP+ SET TT+MYL HS SFFWHPSHQ
Sbjct: 486 QPMIFSAFSLNAETQPSPLPSETFTTIMYLKLHSASFFWHPSHQ 617
Score = 72.1 bits (151), Expect(2) = 5e-031
Identities = 37/57 (64%), Positives = 41/57 (71%)
Frame = +3 / +3
Query: 294 Y*QAVSFAICSSRYLDSAACSTGASLLTVILCLFSLLYSCCVTLTRNR*GTQVASLS 464
Y*+ F I SS+ LDSAA STGA+ LTVILCLFSLLYS TL R*G QVAS +
Sbjct: 255 Y*EPFIFEISSSKNLDSAAKSTGATALTVILCLFSLLYSFWETLILKR*GFQVASFN 425
>gb|DT469656.1|DT469656 WS01918.C21_H17 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01918_H17 3', mRNA sequence
Length = 552
Score = 202 bits (435), Expect = 3e-051
Identities = 80/114 (70%), Positives = 100/114 (87%)
Frame = -1 / -1
Query: 649 EGCQKNDSECSLRYIMVVKVSDPTGEAWVSVFNEHAEKIIGCSADELDRIRKEEGDDSYA 470
EGCQKND+ECSLRYIMVVKVSD +GE WVS FNE AEKIIGCSADELD ++ + +++Y
Sbjct: 549 EGCQKNDAECSLRYIMVVKVSDGSGEGWVSAFNEEAEKIIGCSADELDLLKSQIEENTYQ 370
Query: 469 LKLKEATWVPHLFRVSVTQHEYNNEKRQRITVRSEAPVEHAAESKYLLEQIAKL 308
+LKEATW PHL R+SV+Q+EYNNEKRQR+TVR+ APV+ AAES++LLE+I+K+
Sbjct: 369 QRLKEATWNPHLLRISVSQNEYNNEKRQRMTVRAVAPVDFAAESRFLLEEISKM 208
Score = 77.1 bits (162), Expect(2) = 2e-029
Identities = 31/42 (73%), Positives = 33/42 (78%)
Frame = +3 / +2
Query: 525 QPMIFSACSLNTETHASPVGSETLTTMMYLSEHSESFFWHPS 650
QPMIFSA SLN ET SP+ SET TT+MYL HS SFFWHPS
Sbjct: 425 QPMIFSASSLNAETQPSPLPSETFTTIMYLKLHSASFFWHPS 550
Score = 72.1 bits (151), Expect(2) = 2e-029
Identities = 37/57 (64%), Positives = 41/57 (71%)
Frame = +3 / +2
Query: 294 Y*QAVSFAICSSRYLDSAACSTGASLLTVILCLFSLLYSCCVTLTRNR*GTQVASLS 464
Y*+ F I SS+ LDSAA STGA+ LTVILCLFSLLYS TL R*G QVAS +
Sbjct: 194 Y*EPFIFEISSSKNLDSAAKSTGATALTVILCLFSLLYSFWETLILKR*GFQVASFN 364
>gb|DT496637.1|DT496637 WS01123.BR_P16 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01123_P16 5', mRNA sequence
Length = 605
Score = 199 bits (430), Expect = 1e-050
Identities = 79/113 (69%), Positives = 99/113 (87%)
Frame = -1 / +2
Query: 646 GCQKNDSECSLRYIMVVKVSDPTGEAWVSVFNEHAEKIIGCSADELDRIRKEEGDDSYAL 467
GCQKND+ECSLRYIMVVKVSD +GE WVS FNE AEKIIGCSADELD ++ + +++Y
Sbjct: 2 GCQKNDAECSLRYIMVVKVSDGSGEGWVSAFNEEAEKIIGCSADELDLLKSQIEENTYQQ 181
Query: 466 KLKEATWVPHLFRVSVTQHEYNNEKRQRITVRSEAPVEHAAESKYLLEQIAKL 308
+LKEATW PHL R+SV+Q+EYNNEKRQR+TVR+ APV+ AAES++LLE+I+K+
Sbjct: 182 RLKEATWNPHLLRISVSQNEYNNEKRQRMTVRAVAPVDFAAESRFLLEEISKM 340
Score = 75.3 bits (158), Expect(2) = 7e-029
Identities = 30/41 (73%), Positives = 32/41 (78%)
Frame = +3 / -3
Query: 525 QPMIFSACSLNTETHASPVGSETLTTMMYLSEHSESFFWHP 647
QPMIFSA SLN ET SP+ SET TT+MYL HS SFFWHP
Sbjct: 123 QPMIFSASSLNAETQPSPLPSETFTTIMYLKLHSASFFWHP 1
Score = 72.1 bits (151), Expect(2) = 7e-029
Identities = 37/57 (64%), Positives = 41/57 (71%)
Frame = +3 / -3
Query: 294 Y*QAVSFAICSSRYLDSAACSTGASLLTVILCLFSLLYSCCVTLTRNR*GTQVASLS 464
Y*+ F I SS+ LDSAA STGA+ LTVILCLFSLLYS TL R*G QVAS +
Sbjct: 354 Y*EPFIFEISSSKNLDSAAKSTGATALTVILCLFSLLYSFWETLILKR*GFQVASFN 184
>gb|CV249391.1|CV249391 WS01123.B21_P16 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01123_P16 3', mRNA sequence
Length = 593
Score = 188 bits (405), Expect = 4e-047
Identities = 75/109 (68%), Positives = 95/109 (87%)
Frame = -1 / -2
Query: 634 NDSECSLRYIMVVKVSDPTGEAWVSVFNEHAEKIIGCSADELDRIRKEEGDDSYALKLKE 455
ND+ECSLRYIMVVKVSD +GE WVS FNE AEKIIGCSADELD ++ + +++Y +LKE
Sbjct: 592 NDAECSLRYIMVVKVSDGSGEGWVSAFNEEAEKIIGCSADELDLLKSQIEENTYQQRLKE 413
Query: 454 ATWVPHLFRVSVTQHEYNNEKRQRITVRSEAPVEHAAESKYLLEQIAKL 308
ATW PHL R+SV+Q+EYNNEKRQR+TVR+ APV+ AAES++LLE+I+K+
Sbjct: 412 ATWNPHLLRISVSQNEYNNEKRQRMTVRAVAPVDFAAESRFLLEEISKM 266
Score = 72.1 bits (151), Expect(2) = 2e-024
Identities = 37/57 (64%), Positives = 41/57 (71%)
Frame = +3 / +3
Query: 294 Y*QAVSFAICSSRYLDSAACSTGASLLTVILCLFSLLYSCCVTLTRNR*GTQVASLS 464
Y*+ F I SS+ LDSAA STGA+ LTVILCLFSLLYS TL R*G QVAS +
Sbjct: 252 Y*EPFIFEISSSKNLDSAAKSTGATALTVILCLFSLLYSFWETLILKR*GFQVASFN 422
Score = 60.6 bits (126), Expect(2) = 2e-024
Identities = 26/37 (70%), Positives = 28/37 (75%)
Frame = +3 / +3
Query: 525 QPMIFSACSLNTETHASPVGSETLTTMMYLSEHSESF 635
QPMIFSA SLN ET SP+ SET TT+MYL HS SF
Sbjct: 483 QPMIFSASSLNAETQPSPLPSETFTTIMYLKLHSASF 593
>gb|BU836407.1|BU836407 T086B12 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 351
Score = 163 bits (351), Expect = 1e-039
Identities = 61/77 (79%), Positives = 66/77 (85%)
Frame = -1 / +2
Query: 736 LKPDQNMWYRACKTCNKKVTETFGSGYWCEGCQKNDSECSLRYIMVVKVSDPTGEAWVSV 557
+KPDQ MWYRACKTCNKKVT+ G GYWCE C KND+ECSL+YIMVVKVSD +GE WVS
Sbjct: 113 IKPDQTMWYRACKTCNKKVTDALGGGYWCERCPKNDAECSLKYIMVVKVSDASGEGWVSA 292
Query: 556 FNEHAEKIIGCSADELD 506
FNE AEKII CSADELD
Sbjct: 293 FNEEAEKIICCSADELD 343
Score = 119 bits (254), Expect = 2e-026
Identities = 50/73 (68%), Positives = 54/73 (73%)
Frame = +3 / -1
Query: 525 QPMIFSACSLNTETHASPVGSETLTTMMYLSEHSESFFWHPSHQYPDPKVSVTFLLQVLQ 704
Q MIFSA SLN ET SP+ SET TT+MY HS SFF H SHQYP P+ SVTFLL VLQ
Sbjct: 324 QQMIFSASSLNAETQPSPLASETFTTIMYFKLHSASFFGHLSHQYPPPRASVTFLLHVLQ 145
Query: 705 ARYHMFWSGLXGL 743
ARYH+ WSGL L
Sbjct: 144 ARYHIVWSGLMKL 106
>gb|BU834047.1|BU834047 T056A04 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 285
Score = 73.0 bits (153), Expect(3) = 2e-028
Identities = 27/42 (64%), Positives = 36/42 (85%)
Frame = -1 / +1
Query: 484 DDSYALKLKEATWVPHLFRVSVTQHEYNNEKRQRITVRSEAP 359
+++Y +LKEATW PHL R+ V+Q+EYNNEKRQR+TVR+ AP
Sbjct: 121 ENTYQQRLKEATWNPHLLRIGVSQNEYNNEKRQRMTVRAVAP 246
Score = 65.2 bits (136), Expect(3) = 2e-028
Identities = 26/42 (61%), Positives = 33/42 (78%)
Frame = -1 / +1
Query: 601 VVKVSDPTGEAWVSVFNEHAEKIIGCSADELDRIRKEEGDDS 476
VVKVS +GE WVS FNE AEKII CSADELD ++ + G+++
Sbjct: 1 VVKVSGASGEGWVSAFNEEAEKIICCSADELDLLKSQIGEEN 126
Score = 24.4 bits (47), Expect(3) = 2e-028
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -1 / +2
Query: 361 PVEHAAESKYLLE 323
PV+ AAES++LLE
Sbjct: 245 PVDFAAESRFLLE 283
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 379,176,771
Number of Sequences: 369679
Number of extensions: 5267182
Number of successful extensions: 43594
Number of sequences better than 1.0e-020: 11
length of database: 67,802,888
effective HSP length: 52
effective length of database: 48,579,580
effective search space used: 9813075160
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)