TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.006E19F020311.3.1
(789 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR047829.1|DR047829 RTBOR1_3_H04.g1_A029 Roots plus adde... 116 2e-025
gb|DR047767.1|DR047767 RTBOR1_3_H04.b1_A029 Roots plus adde... 116 3e-025
>gb|DR047829.1|DR047829 RTBOR1_3_H04.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_3_H04_A029 5', mRNA sequence
Length = 414
Score = 116 bits (248), Expect = 2e-025
Identities = 45/67 (67%), Positives = 55/67 (82%)
Frame = +2 / +2
Query: 479 VMLTYLVYEKQQKLRIMMKMHGLKDGPYWLISYSYFLALSIVYMLFFMIFGSLIGLNFFR 658
V+L L YEKQ RIMMKMHGL+DGPYW+I+Y YFL LSI+YM+ F+ FGS +GL FFR
Sbjct: 212 VILASLGYEKQNNQRIMMKMHGLRDGPYWIITYGYFLVLSIIYMVCFVGFGSAVGLKFFR 391
Query: 659 VNEYSIQ 679
+N+YSIQ
Sbjct: 392 LNDYSIQ 412
>gb|DR047767.1|DR047767 RTBOR1_3_H04.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_3_H04_A029 3', mRNA sequence
Length = 744
Score = 116 bits (247), Expect = 3e-025
Identities = 45/82 (54%), Positives = 57/82 (69%)
Frame = +2 / +3
Query: 539 HGLKDGPYWLISYSYFLALSIVYMLFFMIFGSLIGLNFFRVNEYSIQAVFFFVCINLQIX 718
HGL DGPYW+I+Y YFL LS +YM+ F+ FGS +GL FFR+N+YSIQ VF+F+ INLQI
Sbjct: 3 HGLGDGPYWIITYGYFLVLSXIYMVCFVGFGSAVGLKFFRLNDYSIQIVFYFIYINLQIA 182
Query: 719 XXXXXXXXXXXGKMATGMGYMY 784
K AT +GY+Y
Sbjct: 183 LGFLAANAFSDVKTATVVGYLY 248
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 437,915,399
Number of Sequences: 355925
Number of extensions: 6162796
Number of successful extensions: 41987
Number of sequences better than 1.0e-020: 3
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 11322705450
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)