TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.006B01F020311.3.1
(609 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI397974.1|BI397974 NXPV_112_H04_F NXPV (Nsf Xylem Plani... 117 8e-026
gb|DR167393.1|DR167393 RTPHOS1_18_B12.g1_A029 Roots minus p... 93 7e-023
>gb|BI397974.1|BI397974 NXPV_112_H04_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_112_H04 5' similar to Arabidopsis
thaliana sequence At3g10740 putative
alpha-L-arabinofuranosidase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 332
Score = 117 bits (250), Expect = 8e-026
Identities = 48/80 (60%), Positives = 57/80 (71%)
Frame = +1 / +2
Query: 175 RKIPDTFLGVFFEEMGHGGAGGIWAELVSNRGFEAGGPNTPSNIDPWLIVGDDSSVYVET 354
R+IP T G+FF + H GAGG+WAELVSN FEAGGPNTPSNI D+ SV + T
Sbjct: 77 RQIPSTLFGLFFXXINHAGAGGLWAELVSNXXFEAGGPNTPSNIXXXSPXXDEXSVLLAT 256
Query: 355 DRSSCFSRNIVALRMEVLCN 414
DRSS F N +ALRME+LC+
Sbjct: 257 DRSSLFELNKIALRMEILCD 316
>gb|DR167393.1|DR167393 RTPHOS1_18_B12.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_18_B12_A029 5', mRNA sequence
Length = 785
Score = 93.0 bits (197), Expect(2) = 7e-023
Identities = 33/55 (60%), Positives = 45/55 (81%)
Frame = +1 / +1
Query: 412 NDCPAGGVGIYNPGFWGMNIEDGKTYHLVMYVKSPKTTCLTVSLTSSDGLQNLAS 576
N CP GGVG+YNPG+WGMNIE+G++YH+V++V+S L++S TSSDGL LA+
Sbjct: 76 NQCPVGGVGVYNPGYWGMNIEEGESYHVVLWVRSTGPVNLSISFTSSDGLNILAA 240
Score = 34.0 bits (68), Expect(2) = 7e-023
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +1 / +1
Query: 355 DRSSCFSRNIVALRMEVLCN 414
DRSS F N +ALRME+LC+
Sbjct: 4 DRSSLFELNKIALRMEILCD 63
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.317 0.136 0.423
Matrix: BLOSUM62
Number of Hits to DB: 384,298,418
Number of Sequences: 355925
Number of extensions: 6104565
Number of successful extensions: 62614
Number of sequences better than 1.0e-020: 3
length of database: 72,425,745
effective HSP length: 49
effective length of database: 54,985,420
effective search space used: 8412769260
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.6 bits)