TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5351892.2.1
(466 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR080071.1|DR080071 RTFEPL1_20_B11.b1_A029 Roots plus ad... 121 3e-027
>gb|DR080071.1|DR080071 RTFEPL1_20_B11.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_20_B11_A029 3', mRNA sequence
Length = 753
Score = 121 bits (259), Expect = 3e-027
Identities = 43/72 (59%), Positives = 51/72 (70%)
Frame = +3 / +2
Query: 12 GLKPWIMLKSENHVTPDPPCVRAMSIEPCFHQAPFYDCKARKDTDLGKVVPYVRHCEDVS 191
G KPWI+ K EN DPPC + MS+EPCFH PFYDC+A+K D GKV PYV+HCEDV
Sbjct: 503 GTKPWILFKPENDTAADPPCRKVMSMEPCFHAPPFYDCQAKKGIDTGKVFPYVKHCEDVP 682
Query: 192 WGLKIVDQTHL* 227
WG+ V+ L*
Sbjct: 683 WGINPVENDEL* 718
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 228,398,523
Number of Sequences: 355925
Number of extensions: 2834388
Number of successful extensions: 43598
Number of sequences better than 1.0e-020: 1
length of database: 72,425,745
effective HSP length: 50
effective length of database: 54,629,495
effective search space used: 5681467480
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)