TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4580194.2.1
(542 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO370063.1|CO370063 RTK1_65_F06.b1_A029 Roots minus pota... 116 3e-030
gb|DR181988.1|DR181988 RTMNUT1_42_F03.b1_A029 Roots minus m... 116 3e-030
gb|DR182149.1|DR182149 RTMNUT1_43_E03.b1_A029 Roots minus m... 116 3e-030
gb|CO364516.1|CO364516 RTK1_16_D11.b1_A029 Roots minus pota... 116 3e-030
gb|DR047747.1|DR047747 RTBOR1_3_E09.b1_A029 Roots plus adde... 116 3e-030
gb|CO201270.1|CO201270 RTCNT2_4_E04.g1_A029 Root control 2 ... 116 3e-030
gb|CF670269.1|CF670269 RTCNT1_49_D10.b1_A029 Root control P... 116 3e-030
gb|DR072680.1|DR072680 RTDK1_28_A01.b1_A029 Roots, dark Pin... 116 3e-030
gb|CO173924.1|CO173924 NDL1_40_A06.g1_A029 Needles control ... 116 4e-030
gb|CF388498.1|CF388498 RTDR2_3_A05.g1_A021 Loblolly pine ro... 116 4e-030
gb|DR095276.1|DR095276 STRR1_20_A09.b1_A033 Stem Response R... 116 6e-030
gb|CO367753.1|CO367753 RTK1_36_H08.b1_A029 Roots minus pota... 115 6e-030
gb|CO363110.1|CO363110 RTK1_7_E07.g1_A029 Roots minus potas... 116 6e-030
gb|DR071037.1|DR071037 RTDK1_17_E09.b1_A029 Roots, dark Pin... 116 6e-030
gb|DR089849.1|DR089849 RTAL1_11_E03.b1_A029 Roots plus adde... 116 6e-030
gb|DR162343.1|DR162343 RTFE1_17_F05.b1_A029 Roots minus iro... 116 6e-030
gb|CV032403.1|CV032403 RTNACL1_7_H02.g2_A029 Roots plus add... 116 6e-030
gb|CO364239.1|CO364239 RTK1_14_B12.g1_A029 Roots minus pota... 116 6e-030
gb|AW010288.1|AW010288 ST04C10 Pine TriplEx shoot tip libra... 115 8e-030
gb|BX784053.1|BX784053 BX784053 Pinus pinaster differenciat... 116 1e-029
gb|BX252158.1|BX252158 BX252158 Pinus pinaster differenciat... 116 1e-029
gb|CF478853.1|CF478853 RTWW3_15_H11.g1_A022 Well-watered lo... 116 5e-029
gb|AW056493.1|AW056493 ST52E06 Pine TriplEx shoot tip libra... 111 1e-028
gb|AW042648.1|AW042648 ST24D01 Pine TriplEx shoot tip libra... 108 8e-028
gb|CO364217.1|CO364217 RTK1_14_A01.g1_A029 Roots minus pota... 108 9e-028
gb|BE496251.1|BE496251 NXCI_012_G06_F NXCI (Nsf Xylem Compr... 104 1e-026
gb|DR017074.1|DR017074 STRS1_13_H12.g1_A034 Shoot tip pitch... 101 7e-026
gb|AW981715.1|AW981715 PC15H02 Pine TriplEx pollen cone lib... 88 1e-025
gb|AL750348.1|AL750348 AL750348 RN Pinus pinaster cDNA clon... 116 2e-025
gb|CF391753.1|CF391753 RTDR3_11_E11.g1_A022 Loblolly pine r... 116 2e-025
gb|CR394349.1|CR394349 CR394349 RN Pinus pinaster cDNA clon... 96 3e-025
gb|CF401783.1|CF401783 RTWW1_15_A10.b1_A015 Well-watered lo... 104 4e-022
gb|AI813163.1|AI813163 23F8 Pine Lambda Zap Xylem library P... 104 6e-022
gb|BE758631.1|BE758631 NXCI_069_D01_F NXCI (Nsf Xylem Compr... 104 6e-022
gb|BF186439.1|BF186439 NXCI_137_D10_F NXCI (Nsf Xylem Compr... 104 6e-022
gb|BF220773.1|BF220773 NXCI_150_F03_F NXCI (Nsf Xylem Compr... 104 6e-022
gb|BF517069.1|BF517069 NXSI_008_G09_F NXSI (Nsf Xylem Side ... 104 6e-022
gb|BF517615.1|BF517615 NXSI_026_H08_F NXSI (Nsf Xylem Side ... 104 6e-022
gb|BG040824.1|BG040824 NXSI_115_E10_F NXSI (Nsf Xylem Side ... 104 6e-022
gb|BG275841.1|BG275841 NXSI_148_E05_F NXSI (Nsf Xylem Side ... 104 6e-022
gb|BG318007.1|BG318007 NXPV_008_F08_F NXPV (Nsf Xylem Plani... 104 6e-022
gb|BQ635100.1|BQ635100 NXRV077_A06_F NXRV (Nsf Xylem Root w... 104 6e-022
gb|BQ655811.1|BQ655811 NXRV099_F03_F NXRV (Nsf Xylem Root w... 104 6e-022
gb|BQ696488.1|BQ696488 NXPV_041_H02_F NXPV (Nsf Xylem Plani... 104 6e-022
gb|BQ697330.1|BQ697330 NXPV_055_H08_F NXPV (Nsf Xylem Plani... 104 6e-022
gb|BQ700447.1|BQ700447 NXRV105_G09_F NXRV (Nsf Xylem Root w... 104 6e-022
gb|BQ702490.1|BQ702490 NXSI_129_C03_F NXSI (Nsf Xylem Side ... 104 6e-022
gb|BQ703196.1|BQ703196 NXSI_137_G10_F NXSI (Nsf Xylem Side ... 104 6e-022
gb|CF478512.1|CF478512 RTWW3_20_B12.g1_A022 Well-watered lo... 104 6e-022
gb|DR010816.1|DR010816 HEAT1_1_B04.g1_A029 Root at 37 C for... 104 6e-022
gb|DR070639.1|DR070639 RTDK1_14_E02.g1_A029 Roots, dark Pin... 104 6e-022
gb|DR080452.1|DR080452 RTFEPL1_22_F07.g1_A029 Roots plus ad... 104 6e-022
gb|DR090165.1|DR090165 RTAL1_13_D02.b1_A029 Roots plus adde... 104 6e-022
gb|AL750857.1|AL750857 AL750857 RS Pinus pinaster cDNA clon... 103 1e-021
gb|AL750877.1|AL750877 AL750877 RS Pinus pinaster cDNA clon... 103 1e-021
gb|AL750904.1|AL750904 AL750904 RS Pinus pinaster cDNA clon... 103 1e-021
gb|BX254191.1|BX254191 BX254191 Pinus pinaster differenciat... 103 1e-021
gb|BX254964.1|BX254964 BX254964 Pinus pinaster differenciat... 103 1e-021
gb|BQ700446.1|BQ700446 NXRV105_G08_F NXRV (Nsf Xylem Root w... 102 2e-021
gb|CX650430.1|CX650430 COLD1_45_D04.g1_A029 Root cold Pinus... 102 2e-021
gb|BF778627.1|BF778627 NXSI_088_H02_F NXSI (Nsf Xylem Side ... 101 4e-021
gb|BE996939.1|BE996939 NXCI_102_F08_F NXCI (Nsf Xylem Compr... 100 8e-021
>gb|CO370063.1|CO370063 RTK1_65_F06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_65_F06_A029 3', mRNA sequence
Length = 852
Score = 116 bits (247), Expect(2) = 3e-030
Identities = 47/68 (69%), Positives = 52/68 (76%)
Frame = +2 / -3
Query: 338 YCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQMQ 517
YCCN TI++ F V FE LF+KRNTPVAHAVGFWDY +FI AAA FE GF TTGG+ MQ
Sbjct: 529 YCCNQTISEIFTVDNFEELFSKRNTPVAHAVGFWDYYSFINAAAQFEGIGFGTTGGQVMQ 350
Query: 518 MMELCAFL 541
EL AFL
Sbjct: 349 QKELAAFL 326
Score = 35.4 bits (71), Expect(2) = 3e-030
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2 / -3
Query: 242 IALVLTAGTWKAKIKKSQEKICNKGWECSGSKYC 343
+ L+ A + + + K+C+KGWEC G+ C
Sbjct: 622 VVLLALALSLNVSLASKKMKVCDKGWECKGTYCC 521
>gb|DR181988.1|DR181988 RTMNUT1_42_F03.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_42_F03_A029 3', mRNA sequence
Length = 814
Score = 116 bits (247), Expect(2) = 3e-030
Identities = 47/68 (69%), Positives = 52/68 (76%)
Frame = +2 / -2
Query: 338 YCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQMQ 517
YCCN TI++ F V FE LF+KRNTPVAHAVGFWDY +FI AAA FE GF TTGG+ MQ
Sbjct: 663 YCCNQTISEIFTVDNFEELFSKRNTPVAHAVGFWDYYSFINAAAQFEGIGFGTTGGQVMQ 484
Query: 518 MMELCAFL 541
EL AFL
Sbjct: 483 QKELAAFL 460
Score = 35.4 bits (71), Expect(2) = 3e-030
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2 / -2
Query: 242 IALVLTAGTWKAKIKKSQEKICNKGWECSGSKYC 343
+ L+ A + + + K+C+KGWEC G+ C
Sbjct: 756 VVLLALALSLNVSLASKKMKVCDKGWECKGTYCC 655
>gb|DR182149.1|DR182149 RTMNUT1_43_E03.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_43_E03_A029 3', mRNA sequence
Length = 805
Score = 116 bits (247), Expect(2) = 3e-030
Identities = 47/68 (69%), Positives = 52/68 (76%)
Frame = +2 / -1
Query: 338 YCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQMQ 517
YCCN TI++ F V FE LF+KRNTPVAHAVGFWDY +FI AAA FE GF TTGG+ MQ
Sbjct: 655 YCCNQTISEIFTVDNFEELFSKRNTPVAHAVGFWDYYSFINAAAQFEGIGFGTTGGQVMQ 476
Query: 518 MMELCAFL 541
EL AFL
Sbjct: 475 QKELAAFL 452
Score = 35.4 bits (71), Expect(2) = 3e-030
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2 / -1
Query: 242 IALVLTAGTWKAKIKKSQEKICNKGWECSGSKYC 343
+ L+ A + + + K+C+KGWEC G+ C
Sbjct: 748 VVLLALALSLNVSLASKKMKVCDKGWECKGTYCC 647
>gb|CO364516.1|CO364516 RTK1_16_D11.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_16_D11_A029 3', mRNA sequence
Length = 784
Score = 116 bits (247), Expect(2) = 3e-030
Identities = 47/68 (69%), Positives = 52/68 (76%)
Frame = +2 / -3
Query: 338 YCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQMQ 517
YCCN TI++ F V FE LF+KRNTPVAHAVGFWDY +FI AAA FE GF TTGG+ MQ
Sbjct: 629 YCCNQTISEIFTVDNFEELFSKRNTPVAHAVGFWDYYSFINAAAQFEGIGFGTTGGQVMQ 450
Query: 518 MMELCAFL 541
EL AFL
Sbjct: 449 QKELAAFL 426
Score = 35.4 bits (71), Expect(2) = 3e-030
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2 / -3
Query: 242 IALVLTAGTWKAKIKKSQEKICNKGWECSGSKYC 343
+ L+ A + + + K+C+KGWEC G+ C
Sbjct: 722 VVLLALALSLNVSLASKKMKVCDKGWECKGTYCC 621
>gb|DR047747.1|DR047747 RTBOR1_3_E09.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_3_E09_A029 3', mRNA sequence
Length = 770
Score = 116 bits (247), Expect(2) = 3e-030
Identities = 47/68 (69%), Positives = 52/68 (76%)
Frame = +2 / -3
Query: 338 YCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQMQ 517
YCCN TI++ F V FE LF+KRNTPVAHAVGFWDY +FI AAA FE GF TTGG+ MQ
Sbjct: 618 YCCNQTISEIFTVDNFEELFSKRNTPVAHAVGFWDYYSFINAAAQFEGIGFGTTGGQVMQ 439
Query: 518 MMELCAFL 541
EL AFL
Sbjct: 438 QKELAAFL 415
Score = 35.4 bits (71), Expect(2) = 3e-030
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2 / -3
Query: 242 IALVLTAGTWKAKIKKSQEKICNKGWECSGSKYC 343
+ L+ A + + + K+C+KGWEC G+ C
Sbjct: 711 VVLLALALSLNVSLASKKMKVCDKGWECKGTYCC 610
>gb|CO201270.1|CO201270 RTCNT2_4_E04.g1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_4_E04_A029 5', mRNA sequence
Length = 716
Score = 116 bits (247), Expect(2) = 3e-030
Identities = 47/68 (69%), Positives = 52/68 (76%)
Frame = +2 / +1
Query: 338 YCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQMQ 517
YCCN TI++ F V FE LF+KRNTPVAHAVGFWDY +FI AAA FE GF TTGG+ MQ
Sbjct: 151 YCCNQTISEIFTVDNFEELFSKRNTPVAHAVGFWDYYSFINAAAQFEGIGFGTTGGQVMQ 330
Query: 518 MMELCAFL 541
EL AFL
Sbjct: 331 QKELAAFL 354
Score = 35.4 bits (71), Expect(2) = 3e-030
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2 / +1
Query: 242 IALVLTAGTWKAKIKKSQEKICNKGWECSGSKYC 343
+ L+ A + + + K+C+KGWEC G+ C
Sbjct: 58 VVLLALALSLNVSLASKKMKVCDKGWECKGTYCC 159
>gb|CF670269.1|CF670269 RTCNT1_49_D10.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_49_D10_A029 3', mRNA sequence
Length = 645
Score = 116 bits (247), Expect(2) = 3e-030
Identities = 47/68 (69%), Positives = 52/68 (76%)
Frame = +2 / -3
Query: 338 YCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQMQ 517
YCCN TI++ F V FE LF+KRNTPVAHAVGFWDY +FI AAA FE GF TTGG+ MQ
Sbjct: 484 YCCNQTISEIFTVDNFEELFSKRNTPVAHAVGFWDYYSFINAAAQFEGIGFGTTGGQVMQ 305
Query: 518 MMELCAFL 541
EL AFL
Sbjct: 304 QKELAAFL 281
Score = 35.4 bits (71), Expect(2) = 3e-030
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2 / -3
Query: 242 IALVLTAGTWKAKIKKSQEKICNKGWECSGSKYC 343
+ L+ A + + + K+C+KGWEC G+ C
Sbjct: 577 VVLLALALSLNVSLASKKMKVCDKGWECKGTYCC 476
>gb|DR072680.1|DR072680 RTDK1_28_A01.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_28_A01_A029 3', mRNA sequence
Length = 535
Score = 116 bits (247), Expect(2) = 3e-030
Identities = 47/68 (69%), Positives = 52/68 (76%)
Frame = +2 / -1
Query: 338 YCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQMQ 517
YCCN TI++ F V FE LF+KRNTPVAHAVGFWDY +FI AAA FE GF TTGG+ MQ
Sbjct: 280 YCCNQTISEIFTVDNFEELFSKRNTPVAHAVGFWDYYSFINAAAQFEGIGFGTTGGQVMQ 101
Query: 518 MMELCAFL 541
EL AFL
Sbjct: 100 QKELAAFL 77
Score = 35.4 bits (71), Expect(2) = 3e-030
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2 / -1
Query: 242 IALVLTAGTWKAKIKKSQEKICNKGWECSGSKYC 343
+ L+ A + + + K+C+KGWEC G+ C
Sbjct: 373 VVLLALALSLNVSLASKKMKVCDKGWECKGTYCC 272
>gb|CO173924.1|CO173924 NDL1_40_A06.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_40_A06_A029 5', mRNA sequence
Length = 741
Score = 116 bits (247), Expect(2) = 4e-030
Identities = 47/68 (69%), Positives = 52/68 (76%)
Frame = +2 / +1
Query: 338 YCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQMQ 517
YCCN TI++ F V FE LF+KRNTPVAHAVGFWDY +FI AAA FE GF TTGG+ MQ
Sbjct: 106 YCCNQTISEIFTVDNFEELFSKRNTPVAHAVGFWDYYSFINAAAQFEGIGFGTTGGQVMQ 285
Query: 518 MMELCAFL 541
EL AFL
Sbjct: 286 QKELAAFL 309
Score = 35.0 bits (70), Expect(2) = 4e-030
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2 / +1
Query: 242 IALVLTAGTWKAKIKKSQEKICNKGWECSGSKYC 343
+ L+ A + + KIC+KGWEC G+ C
Sbjct: 13 VVLLALALCLNVSLASKKMKICDKGWECKGAYCC 114
>gb|CF388498.1|CF388498 RTDR2_3_A05.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_3_A05_A021 5', mRNA
sequence
Length = 727
Score = 116 bits (247), Expect(2) = 4e-030
Identities = 47/68 (69%), Positives = 52/68 (76%)
Frame = +2 / +2
Query: 338 YCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQMQ 517
YCCN TI++ F V FE LF+KRNTPVAHAVGFWDY +FI AAA FE GF TTGG+ MQ
Sbjct: 194 YCCNQTISEIFTVDNFEELFSKRNTPVAHAVGFWDYYSFINAAAQFEGIGFGTTGGQVMQ 373
Query: 518 MMELCAFL 541
EL AFL
Sbjct: 374 QKELAAFL 397
Score = 35.0 bits (70), Expect(2) = 4e-030
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2 / +2
Query: 242 IALVLTAGTWKAKIKKSQEKICNKGWECSGSKYC 343
+ L+ A + + KIC+KGWEC G+ C
Sbjct: 101 VVLLALALCLNVSLASKKMKICDKGWECKGAYCC 202
>gb|DR095276.1|DR095276 STRR1_20_A09.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_20_A09_A033 3', mRNA sequence
Length = 813
Score = 116 bits (247), Expect(2) = 6e-030
Identities = 47/68 (69%), Positives = 52/68 (76%)
Frame = +2 / -2
Query: 338 YCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQMQ 517
YCCN TI++ F V FE LF+KRNTPVAHAVGFWDY +FI AAA FE GF TTGG+ MQ
Sbjct: 656 YCCNQTISEIFTVDNFEELFSKRNTPVAHAVGFWDYYSFINAAAQFEGIGFGTTGGQVMQ 477
Query: 518 MMELCAFL 541
EL AFL
Sbjct: 476 QKELAAFL 453
Score = 34.5 bits (69), Expect(2) = 6e-030
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2 / -2
Query: 242 IALVLTAGTWKAKIKKSQEKICNKGWECSGSKYC 343
+ L+ A + + K+C+KGWEC G+ C
Sbjct: 749 VVLLALALCLNVSLASKKMKVCDKGWECKGTYCC 648
>gb|CO367753.1|CO367753 RTK1_36_H08.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_36_H08_A029 3', mRNA sequence
Length = 766
Score = 115 bits (245), Expect(2) = 6e-030
Identities = 47/68 (69%), Positives = 52/68 (76%)
Frame = +2 / -2
Query: 338 YCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQMQ 517
YCCN TI++ F V FE LF+KRNTPVAHAVGFWDY +FI AAA FE GF TTGG+ MQ
Sbjct: 615 YCCNQTISEIFTVDNFEELFSKRNTPVAHAVGFWDYYSFINAAAQFEGIGFGTTGGQVMQ 436
Query: 518 MMELCAFL 541
EL AFL
Sbjct: 435 HKELAAFL 412
Score = 35.4 bits (71), Expect(2) = 6e-030
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2 / -2
Query: 242 IALVLTAGTWKAKIKKSQEKICNKGWECSGSKYC 343
+ L+ A + + + K+C+KGWEC G+ C
Sbjct: 708 VVLLALALSLNVSLASKKMKVCDKGWECKGTYCC 607
>gb|CO363110.1|CO363110 RTK1_7_E07.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_7_E07_A029 5', mRNA sequence
Length = 754
Score = 116 bits (247), Expect(2) = 6e-030
Identities = 47/68 (69%), Positives = 52/68 (76%)
Frame = +2 / +1
Query: 338 YCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQMQ 517
YCCN TI++ F V FE LF+KRNTPVAHAVGFWDY +FI AAA FE GF TTGG+ MQ
Sbjct: 199 YCCNQTISEIFTVDNFEELFSKRNTPVAHAVGFWDYYSFINAAAQFEGIGFGTTGGQVMQ 378
Query: 518 MMELCAFL 541
EL AFL
Sbjct: 379 QKELAAFL 402
Score = 34.5 bits (69), Expect(2) = 6e-030
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2 / +1
Query: 242 IALVLTAGTWKAKIKKSQEKICNKGWECSGSKYC 343
+ L+ A + + K+C+KGWEC G+ C
Sbjct: 106 VVLLALALCLNVSLASKKMKVCDKGWECKGTYCC 207
>gb|DR071037.1|DR071037 RTDK1_17_E09.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_17_E09_A029 3', mRNA sequence
Length = 739
Score = 116 bits (247), Expect(2) = 6e-030
Identities = 47/68 (69%), Positives = 52/68 (76%)
Frame = +2 / -1
Query: 338 YCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQMQ 517
YCCN TI++ F V FE LF+KRNTPVAHAVGFWDY +FI AAA FE GF TTGG+ MQ
Sbjct: 550 YCCNQTISEIFTVDNFEELFSKRNTPVAHAVGFWDYYSFINAAAQFEGIGFGTTGGQVMQ 371
Query: 518 MMELCAFL 541
EL AFL
Sbjct: 370 QKELAAFL 347
Score = 34.5 bits (69), Expect(2) = 6e-030
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2 / -1
Query: 242 IALVLTAGTWKAKIKKSQEKICNKGWECSGSKYC 343
+ L+ A + + K+C+KGWEC G+ C
Sbjct: 643 VVLLALALCLNVSLASKKMKVCDKGWECKGTYCC 542
>gb|DR089849.1|DR089849 RTAL1_11_E03.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_11_E03_A029 3', mRNA sequence
Length = 682
Score = 116 bits (247), Expect(2) = 6e-030
Identities = 47/68 (69%), Positives = 52/68 (76%)
Frame = +2 / -3
Query: 338 YCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQMQ 517
YCCN TI++ F V FE LF+KRNTPVAHAVGFWDY +FI AAA FE GF TTGG+ MQ
Sbjct: 500 YCCNQTISEIFTVDNFEELFSKRNTPVAHAVGFWDYYSFINAAAQFEGIGFGTTGGQVMQ 321
Query: 518 MMELCAFL 541
EL AFL
Sbjct: 320 QKELAAFL 297
Score = 34.5 bits (69), Expect(2) = 6e-030
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2 / -3
Query: 242 IALVLTAGTWKAKIKKSQEKICNKGWECSGSKYC 343
+ L+ A + + K+C+KGWEC G+ C
Sbjct: 593 VVLLALALCLNVSLASKKMKVCDKGWECKGTYCC 492
>gb|DR162343.1|DR162343 RTFE1_17_F05.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_17_F05_A029 3', mRNA sequence
Length = 658
Score = 116 bits (247), Expect(2) = 6e-030
Identities = 47/68 (69%), Positives = 52/68 (76%)
Frame = +2 / -3
Query: 338 YCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQMQ 517
YCCN TI++ F V FE LF+KRNTPVAHAVGFWDY +FI AAA FE GF TTGG+ MQ
Sbjct: 521 YCCNQTISEIFTVDNFEELFSKRNTPVAHAVGFWDYYSFINAAAQFEGIGFGTTGGQVMQ 342
Query: 518 MMELCAFL 541
EL AFL
Sbjct: 341 QKELAAFL 318
Score = 34.5 bits (69), Expect(2) = 6e-030
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2 / -3
Query: 242 IALVLTAGTWKAKIKKSQEKICNKGWECSGSKYC 343
+ L+ A + + K+C+KGWEC G+ C
Sbjct: 614 VVLLALALCLNVSLASKKMKVCDKGWECKGTYCC 513
>gb|CV032403.1|CV032403 RTNACL1_7_H02.g2_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_7_H02_A029 5', mRNA sequence
Length = 632
Score = 116 bits (247), Expect(2) = 6e-030
Identities = 47/68 (69%), Positives = 52/68 (76%)
Frame = +2 / +3
Query: 338 YCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQMQ 517
YCCN TI++ F V FE LF+KRNTPVAHAVGFWDY +FI AAA FE GF TTGG+ MQ
Sbjct: 105 YCCNQTISEIFTVDNFEELFSKRNTPVAHAVGFWDYYSFINAAAQFEGIGFGTTGGQVMQ 284
Query: 518 MMELCAFL 541
EL AFL
Sbjct: 285 QKELAAFL 308
Score = 34.5 bits (69), Expect(2) = 6e-030
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2 / +3
Query: 242 IALVLTAGTWKAKIKKSQEKICNKGWECSGSKYC 343
+ L+ A + + K+C+KGWEC G+ C
Sbjct: 12 VVLLALALCLNVSLASKKMKVCDKGWECKGTYCC 113
>gb|CO364239.1|CO364239 RTK1_14_B12.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_14_B12_A029 5', mRNA sequence
Length = 622
Score = 116 bits (247), Expect(2) = 6e-030
Identities = 47/68 (69%), Positives = 52/68 (76%)
Frame = +2 / +3
Query: 338 YCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQMQ 517
YCCN TI++ F V FE LF+KRNTPVAHAVGFWDY +FI AAA FE GF TTGG+ MQ
Sbjct: 123 YCCNQTISEIFTVDNFEELFSKRNTPVAHAVGFWDYYSFINAAAQFEGIGFGTTGGQVMQ 302
Query: 518 MMELCAFL 541
EL AFL
Sbjct: 303 QKELAAFL 326
Score = 34.5 bits (69), Expect(2) = 6e-030
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2 / +3
Query: 242 IALVLTAGTWKAKIKKSQEKICNKGWECSGSKYC 343
+ L+ A + + K+C+KGWEC G+ C
Sbjct: 30 VVLLALALCLNVSLASKKMKVCDKGWECKGTYCC 131
>gb|AW010288.1|AW010288 ST04C10 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST04C10, mRNA sequence
Length = 840
Score = 115 bits (246), Expect(2) = 8e-030
Identities = 47/68 (69%), Positives = 52/68 (76%)
Frame = +2 / +1
Query: 338 YCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQMQ 517
YCCN TI++ F V FE LF+KRNTPVAHAVGFWDY +FI AAA FE GF TTGG+ MQ
Sbjct: 178 YCCNQTISEIFTVDNFEELFSKRNTPVAHAVGFWDYYSFINAAAQFEGIGFGTTGGQVMQ 357
Query: 518 MMELCAFL 541
EL AFL
Sbjct: 358 XKELAAFL 381
Score = 34.5 bits (69), Expect(2) = 8e-030
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2 / +1
Query: 242 IALVLTAGTWKAKIKKSQEKICNKGWECSGSKYC 343
+ L+ A + + K+C+KGWEC G+ C
Sbjct: 85 VVLLALALCLNVSLASKKMKVCDKGWECKGTYCC 186
>gb|BX784053.1|BX784053 BX784053 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 128B12 similar to ENDOCHITINASE (EC
3.2.1.14), mRNA sequence
Length = 744
Score = 116 bits (247), Expect(2) = 1e-029
Identities = 47/68 (69%), Positives = 52/68 (76%)
Frame = +2 / +3
Query: 338 YCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQMQ 517
YCCN TI++ F V FE LF+KRNTPVAHAVGFWDY +FI AAA FE GF TTGG+ MQ
Sbjct: 153 YCCNQTISEIFTVDNFEQLFSKRNTPVAHAVGFWDYYSFINAAAQFEGIGFGTTGGQVMQ 332
Query: 518 MMELCAFL 541
EL AFL
Sbjct: 333 QKELAAFL 356
Score = 33.6 bits (67), Expect(2) = 1e-029
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2 / +3
Query: 242 IALVLTAGTWKAKIKKSQEKICNKGWECSGSKYC 343
+ L+ A + + KIC+KGWEC G C
Sbjct: 60 VVLLALALCLNVSLASKKMKICDKGWECKGVYCC 161
>gb|BX252158.1|BX252158 BX252158 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP060F03, mRNA sequence
Length = 696
Score = 116 bits (247), Expect(2) = 1e-029
Identities = 47/68 (69%), Positives = 52/68 (76%)
Frame = +2 / +1
Query: 338 YCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQMQ 517
YCCN TI++ F V FE LF+KRNTPVAHAVGFWDY +FI AAA FE GF TTGG+ MQ
Sbjct: 163 YCCNQTISEIFTVDNFEQLFSKRNTPVAHAVGFWDYYSFINAAAQFEGIGFGTTGGQVMQ 342
Query: 518 MMELCAFL 541
EL AFL
Sbjct: 343 QKELAAFL 366
Score = 33.6 bits (67), Expect(2) = 1e-029
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2 / +1
Query: 242 IALVLTAGTWKAKIKKSQEKICNKGWECSGSKYC 343
+ L+ A + + KIC+KGWEC G C
Sbjct: 70 VVLLALALCLNVSLASKKMKICDKGWECKGVYCC 171
>gb|CF478853.1|CF478853 RTWW3_15_H11.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_15_H11_A022 5', mRNA sequence
Length = 476
Score = 116 bits (247), Expect(2) = 5e-029
Identities = 47/68 (69%), Positives = 52/68 (76%)
Frame = +2 / +1
Query: 338 YCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQMQ 517
YCCN TI++ F V FE LF+KRNTPVAHAVGFWDY +FI AAA FE GF TTGG+ MQ
Sbjct: 49 YCCNQTISEIFTVDNFEELFSKRNTPVAHAVGFWDYYSFINAAAQFEGIGFGTTGGQVMQ 228
Query: 518 MMELCAFL 541
EL AFL
Sbjct: 229 QKELAAFL 252
Score = 31.3 bits (62), Expect(2) = 5e-029
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +2 / +1
Query: 299 KICNKGWECSGSKYC 343
K+C+KGWEC G+ C
Sbjct: 13 KVCDKGWEC*GTYCC 57
>gb|AW056493.1|AW056493 ST52E06 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST52E06, mRNA sequence
Length = 431
Score = 111 bits (236), Expect(2) = 1e-028
Identities = 45/67 (67%), Positives = 50/67 (74%)
Frame = +2 / +1
Query: 338 YCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQMQ 517
YCCN TI++ F V FE LF+KRNTPVAHAVGFWDY +FI AAA FE GF TTGG+ M
Sbjct: 178 YCCNQTISEIFTVDNFEELFSKRNTPVAHAVGFWDYYSFINAAAQFEGIGFGTTGGQVMX 357
Query: 518 MMELCAF 538
EL AF
Sbjct: 358 XKELAAF 378
Score = 35.0 bits (70), Expect(2) = 1e-028
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2 / +1
Query: 242 IALVLTAGTWKAKIKKSQEKICNKGWECSGSKYC 343
+ L+ A + + KIC+KGWEC G+ C
Sbjct: 85 VVLLALALCLNVSLASKKMKICDKGWECKGAYCC 186
>gb|AW042648.1|AW042648 ST24D01 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST24D01, mRNA sequence
Length = 601
Score = 108 bits (230), Expect(2) = 8e-028
Identities = 43/66 (65%), Positives = 49/66 (74%)
Frame = +2 / +1
Query: 338 YCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQMQ 517
YCCN TI++ F V FE LF+KRNTPVAHAVGFWDY +FI AAA FE GF TTGG+ MQ
Sbjct: 190 YCCNQTISEIFTVDNFEELFSKRNTPVAHAVGFWDYYSFINAAAQFEGIGFGTTGGQVMQ 369
Query: 518 MMELCA 535
C+
Sbjct: 370 QEGACS 387
Score = 35.0 bits (70), Expect(2) = 8e-028
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2 / +1
Query: 242 IALVLTAGTWKAKIKKSQEKICNKGWECSGSKYC 343
+ L+ A + + KIC+KGWEC G+ C
Sbjct: 97 VVLLALALCLNVSLASKKMKICDKGWECKGAYCC 198
>gb|CO364217.1|CO364217 RTK1_14_A01.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_14_A01_A029 5', mRNA sequence
Length = 310
Score = 108 bits (230), Expect(2) = 9e-028
Identities = 44/64 (68%), Positives = 49/64 (76%)
Frame = +2 / +3
Query: 338 YCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQMQ 517
YCCN TI++ F V FE LF+KRNTPVAHAVGFWDY +FI AAA FE GF TTGG+ MQ
Sbjct: 117 YCCNHTISEIFTVDNFEELFSKRNTPVAHAVGFWDYYSFINAAAQFEGIGFGTTGGQVMQ 296
Query: 518 MMEL 529
EL
Sbjct: 297 HKEL 308
Score = 34.1 bits (68), Expect(2) = 9e-028
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +2 / +3
Query: 242 IALVLTAGTWKAKIKKSQEKICNKGWECSGSKYC 343
+ L+ A + K+C+KGWEC G+ C
Sbjct: 24 VVLLALALCLNVSLASKNMKVCHKGWECKGTYCC 125
>gb|BE496251.1|BE496251 NXCI_012_G06_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_012_G06 5' similar to Arabidopsis
thaliana sequence At1g05850 putative endochitinase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 333
Score = 104 bits (221), Expect(2) = 1e-026
Identities = 42/64 (65%), Positives = 47/64 (73%)
Frame = +2 / +1
Query: 338 YCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQMQ 517
YCCN TI++ F V FE LF+KRNTPVAHAVGFWDY +FI AAA FE GF TTGG+ M
Sbjct: 133 YCCNQTISEIFTVDNFEELFSKRNTPVAHAVGFWDYYSFINAAAQFEGIGFGTTGGQVMX 312
Query: 518 MMEL 529
L
Sbjct: 313 QXXL 324
Score = 34.5 bits (69), Expect(2) = 1e-026
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2 / +1
Query: 242 IALVLTAGTWKAKIKKSQEKICNKGWECSGSKYC 343
+ L+ A + + K+C+KGWEC G+ C
Sbjct: 40 VVLLALALCLNVSLASKKMKVCDKGWECKGTYCC 141
>gb|DR017074.1|DR017074 STRS1_13_H12.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_13_H12_A034 5', mRNA sequence
Length = 500
Score = 101 bits (216), Expect(2) = 7e-026
Identities = 40/56 (71%), Positives = 44/56 (78%)
Frame = +2 / +1
Query: 338 YCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGG 505
YCCN TI++ F V FE LF+KRNTPVAHAVGFWDY +FI AAA FE GF TTGG
Sbjct: 151 YCCNQTISEIFTVDNFEELFSKRNTPVAHAVGFWDYYSFINAAAQFEGIGFGTTGG 318
Score = 35.0 bits (70), Expect(2) = 7e-026
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2 / +1
Query: 242 IALVLTAGTWKAKIKKSQEKICNKGWECSGSKYC 343
+ L+ A + + KIC+KGWEC G+ C
Sbjct: 58 VVLLALALCLNVSLASKKMKICDKGWECKGAYCC 159
>gb|AW981715.1|AW981715 PC15H02 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC15H02, mRNA sequence
Length = 519
Score = 87.7 bits (185), Expect(3) = 1e-025
Identities = 37/54 (68%), Positives = 40/54 (74%)
Frame = +2 / +3
Query: 380 QFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQMQMMELCAFL 541
QF LF+KRNTPVAHAVGFWDY +FI AAA FE GF TTGG+ MQ EL L
Sbjct: 174 QFRRLFSKRNTPVAHAVGFWDYYSFINAAAQFEGIGFGTTGGQVMQQKELAPSL 335
Score = 35.0 bits (70), Expect(3) = 1e-025
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2 / +1
Query: 242 IALVLTAGTWKAKIKKSQEKICNKGWECSGSKYC 343
+ L+ A + + KIC+KGWEC G+ C
Sbjct: 40 VVLLALALCLNVSLASKKMKICDKGWECKGAYCC 141
Score = 30.9 bits (61), Expect(3) = 1e-025
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2 / +1
Query: 338 YCCNDTITDFFKVYQFEN 391
YCCN TI++ F V FE+
Sbjct: 133 YCCNQTISEIFTVDNFED 186
>gb|AL750348.1|AL750348 AL750348 RN Pinus pinaster cDNA clone RN01D11 similar to CHITINASE,
mRNA sequence
Length = 363
Score = 116 bits (247), Expect = 2e-025
Identities = 47/68 (69%), Positives = 52/68 (76%)
Frame = +2 / +2
Query: 338 YCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQMQ 517
YCCN TI++ F V FE LF+KRNTPVAHAVGFWDY +FI AAA FE GF TTGG+ MQ
Sbjct: 2 YCCNQTISEIFTVDNFEQLFSKRNTPVAHAVGFWDYYSFINAAAQFEGIGFGTTGGQVMQ 181
Query: 518 MMELCAFL 541
EL AFL
Sbjct: 182 QKELAAFL 205
>gb|CF391753.1|CF391753 RTDR3_11_E11.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_11_E11_A022 5', mRNA
sequence
Length = 732
Score = 116 bits (247), Expect = 2e-025
Identities = 47/68 (69%), Positives = 52/68 (76%)
Frame = +2 / +3
Query: 338 YCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQMQ 517
YCCN TI++ F V FE LF+KRNTPVAHAVGFWDY +FI AAA FE GF TTGG+ MQ
Sbjct: 21 YCCNQTISEIFTVDNFEELFSKRNTPVAHAVGFWDYYSFINAAAQFEGIGFGTTGGQVMQ 200
Query: 518 MMELCAFL 541
EL AFL
Sbjct: 201 QKELAAFL 224
>gb|CR394349.1|CR394349 CR394349 RN Pinus pinaster cDNA clone RN78A11, mRNA sequence
Length = 480
Score = 96.4 bits (204), Expect(3) = 3e-025
Identities = 41/58 (70%), Positives = 44/58 (75%)
Frame = +2 / +1
Query: 368 FKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTGGKQMQMMELCAFL 541
F V FE LF+KRNTPVAHAVGFWDY +FI AAA FE GF TTGG+ MQ EL AFL
Sbjct: 115 FTVDNFEQLFSKRNTPVAHAVGFWDYYSFINAAAQFEGIGFGTTGGQVMQQKELAAFL 288
Score = 33.1 bits (66), Expect(3) = 3e-025
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2 / +2
Query: 269 WKAKIKKSQEKICNKGWECSGSKYC 343
++ + + KIC+KGWEC G C
Sbjct: 20 FECSLASKKMKICDKGWECKGVYCC 94
Score = 22.6 bits (43), Expect(3) = 3e-025
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = +2 / +2
Query: 338 YCCNDTITD 364
YCCN TI++
Sbjct: 86 YCCNQTISE 112
>gb|CF401783.1|CF401783 RTWW1_15_A10.b1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_15_A10_A015 3', mRNA sequence
Length = 670
Score = 104 bits (222), Expect = 4e-022
Identities = 42/72 (58%), Positives = 53/72 (73%)
Frame = +2 / -3
Query: 323 CSGSKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTG 502
C+ + C N TI++ F V QFE+LF+ RN P+AHA GFWDY +FITAAA +EP+GF TTG
Sbjct: 509 CAKATDCKNKTISELFTVDQFESLFSHRNAPLAHAQGFWDYHSFITAAAHYEPKGFGTTG 330
Query: 503 GKQMQMMELCAF 538
G +Q EL AF
Sbjct: 329 GNIVQKRELAAF 294
>gb|AI813163.1|AI813163 23F8 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 595
Score = 104 bits (221), Expect = 6e-022
Identities = 42/72 (58%), Positives = 53/72 (73%)
Frame = +2 / +3
Query: 323 CSGSKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTG 502
C+ + C N TI++ F V QFE+LF+ RN P+AHA GFWDY +FITAAA +EP+GF TTG
Sbjct: 150 CAKATDCKNKTISELFTVDQFESLFSHRNAPLAHAQGFWDYHSFITAAAHYEPKGFGTTG 329
Query: 503 GKQMQMMELCAF 538
G +Q EL AF
Sbjct: 330 GDIVQKRELAAF 365
>gb|BE758631.1|BE758631 NXCI_069_D01_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_069_D01 5' similar to Arabidopsis
thaliana sequence At1g05850 putative endochitinase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 536
Score = 104 bits (221), Expect = 6e-022
Identities = 42/72 (58%), Positives = 53/72 (73%)
Frame = +2 / +3
Query: 323 CSGSKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTG 502
C+ + C N TI++ F V QFE+LF+ RN P+AHA GFWDY +FITAAA +EP+GF TTG
Sbjct: 210 CAKATDCKNKTISELFTVDQFESLFSHRNAPLAHAQGFWDYHSFITAAAHYEPKGFGTTG 389
Query: 503 GKQMQMMELCAF 538
G +Q EL AF
Sbjct: 390 GDIVQKXELAAF 425
>gb|BF186439.1|BF186439 NXCI_137_D10_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_137_D10 5' similar to Arabidopsis
thaliana sequence At1g05850 putative endochitinase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 383
Score = 104 bits (221), Expect = 6e-022
Identities = 42/72 (58%), Positives = 53/72 (73%)
Frame = +2 / +2
Query: 323 CSGSKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTG 502
C+ + C N TI++ F V QFE+LF+ RN P+AHA GFWDY +FITAAA +EP+GF TTG
Sbjct: 98 CAKATDCKNKTISELFTVDQFESLFSHRNAPLAHAQGFWDYHSFITAAAHYEPKGFGTTG 277
Query: 503 GKQMQMMELCAF 538
G +Q EL AF
Sbjct: 278 GDIVQKXELAAF 313
>gb|BF220773.1|BF220773 NXCI_150_F03_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_150_F03 5' similar to Arabidopsis
thaliana sequence At1g05850 putative endochitinase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 519
Score = 104 bits (221), Expect = 6e-022
Identities = 42/72 (58%), Positives = 53/72 (73%)
Frame = +2 / +1
Query: 323 CSGSKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTG 502
C+ + C N TI++ F V QFE+LF+ RN P+AHA GFWDY +FITAAA +EP+GF TTG
Sbjct: 130 CAKATDCKNKTISELFTVDQFESLFSHRNAPLAHAQGFWDYHSFITAAAHYEPKGFGTTG 309
Query: 503 GKQMQMMELCAF 538
G +Q EL AF
Sbjct: 310 GDIVQKXELAAF 345
>gb|BF517069.1|BF517069 NXSI_008_G09_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_008_G09 5' similar to Arabidopsis thaliana
sequence At1g05850 putative endochitinase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 499
Score = 104 bits (221), Expect = 6e-022
Identities = 42/72 (58%), Positives = 53/72 (73%)
Frame = +2 / +1
Query: 323 CSGSKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTG 502
C+ + C N TI++ F V QFE+LF+ RN P+AHA GFWDY +FITAAA +EP+GF TTG
Sbjct: 181 CAKATDCKNKTISELFTVDQFESLFSHRNAPLAHAQGFWDYHSFITAAAHYEPKGFGTTG 360
Query: 503 GKQMQMMELCAF 538
G +Q EL AF
Sbjct: 361 GDIVQKXELAAF 396
>gb|BF517615.1|BF517615 NXSI_026_H08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_026_H08 5' similar to Arabidopsis thaliana
sequence At1g05850 putative endochitinase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 487
Score = 104 bits (221), Expect = 6e-022
Identities = 42/72 (58%), Positives = 53/72 (73%)
Frame = +2 / +2
Query: 323 CSGSKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTG 502
C+ + C N TI++ F V QFE+LF+ RN P+AHA GFWDY +FITAAA +EP+GF TTG
Sbjct: 98 CAKATDCKNKTISELFTVDQFESLFSHRNAPLAHAQGFWDYHSFITAAAHYEPKGFGTTG 277
Query: 503 GKQMQMMELCAF 538
G +Q EL AF
Sbjct: 278 GDIVQKXELAAF 313
>gb|BG040824.1|BG040824 NXSI_115_E10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_115_E10 5' similar to Arabidopsis thaliana
sequence At1g05850 putative endochitinase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 379
Score = 104 bits (221), Expect = 6e-022
Identities = 42/72 (58%), Positives = 53/72 (73%)
Frame = +2 / +1
Query: 323 CSGSKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTG 502
C+ + C N TI++ F V QFE+LF+ RN P+AHA GFWDY +FITAAA +EP+GF TTG
Sbjct: 136 CAKATDCKNKTISELFTVDQFESLFSHRNAPLAHAQGFWDYHSFITAAAHYEPKGFGTTG 315
Query: 503 GKQMQMMELCAF 538
G +Q EL AF
Sbjct: 316 GDIVQKXELAAF 351
>gb|BG275841.1|BG275841 NXSI_148_E05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_148_E05 5' similar to Arabidopsis thaliana
sequence At1g05850 putative endochitinase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 527
Score = 104 bits (221), Expect = 6e-022
Identities = 42/72 (58%), Positives = 53/72 (73%)
Frame = +2 / +2
Query: 323 CSGSKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTG 502
C+ + C N TI++ F V QFE+LF+ RN P+AHA GFWDY +FITAAA +EP+GF TTG
Sbjct: 224 CAKATDCKNKTISELFTVDQFESLFSHRNAPLAHAQGFWDYHSFITAAAHYEPKGFGTTG 403
Query: 503 GKQMQMMELCAF 538
G +Q EL AF
Sbjct: 404 GDIVQKRELAAF 439
>gb|BG318007.1|BG318007 NXPV_008_F08_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_008_F08 5' similar to Arabidopsis
thaliana sequence At1g05850 putative endochitinase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 588
Score = 104 bits (221), Expect = 6e-022
Identities = 42/72 (58%), Positives = 53/72 (73%)
Frame = +2 / +2
Query: 323 CSGSKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTG 502
C+ + C N TI++ F V QFE+LF+ RN P+AHA GFWDY +FITAAA +EP+GF TTG
Sbjct: 224 CAKATDCKNKTISELFTVDQFESLFSHRNAPLAHAQGFWDYHSFITAAAHYEPKGFGTTG 403
Query: 503 GKQMQMMELCAF 538
G +Q EL AF
Sbjct: 404 GDIVQKRELAAF 439
>gb|BQ635100.1|BQ635100 NXRV077_A06_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV077_A06 5' similar to Arabidopsis thaliana
sequence At3g16920 basic chitinase, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 690
Score = 104 bits (221), Expect = 6e-022
Identities = 42/72 (58%), Positives = 53/72 (73%)
Frame = +2 / +2
Query: 323 CSGSKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTG 502
C+ + C N TI++ F V QFE+LF+ RN P+AHA GFWDY +FITAAA +EP+GF TTG
Sbjct: 221 CAKATDCKNKTISELFTVDQFESLFSHRNAPLAHAQGFWDYHSFITAAAHYEPKGFGTTG 400
Query: 503 GKQMQMMELCAF 538
G +Q EL AF
Sbjct: 401 GDIVQKRELAAF 436
>gb|BQ655811.1|BQ655811 NXRV099_F03_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV099_F03 5' similar to Arabidopsis thaliana
sequence At1g05850 putative endochitinase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 561
Score = 104 bits (221), Expect = 6e-022
Identities = 42/72 (58%), Positives = 53/72 (73%)
Frame = +2 / +2
Query: 323 CSGSKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTG 502
C+ + C N TI++ F V QFE+LF+ RN P+AHA GFWDY +FITAAA +EP+GF TTG
Sbjct: 221 CAKATDCKNKTISELFTVDQFESLFSHRNAPLAHAQGFWDYHSFITAAAHYEPKGFGTTG 400
Query: 503 GKQMQMMELCAF 538
G +Q EL AF
Sbjct: 401 GDIVQKXELAAF 436
>gb|BQ696488.1|BQ696488 NXPV_041_H02_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_041_H02 5' similar to Arabidopsis
thaliana sequence At3g16920 basic chitinase, putative
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 650
Score = 104 bits (221), Expect = 6e-022
Identities = 42/72 (58%), Positives = 53/72 (73%)
Frame = +2 / +2
Query: 323 CSGSKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTG 502
C+ + C N TI++ F V QFE+LF+ RN P+AHA GFWDY +FITAAA +EP+GF TTG
Sbjct: 224 CAKATDCKNKTISELFTVDQFESLFSHRNAPLAHAQGFWDYHSFITAAAHYEPKGFGTTG 403
Query: 503 GKQMQMMELCAF 538
G +Q EL AF
Sbjct: 404 GDIVQKRELAAF 439
>gb|BQ697330.1|BQ697330 NXPV_055_H08_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_055_H08 5' similar to Arabidopsis
thaliana sequence At1g05850 putative endochitinase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 391
Score = 104 bits (221), Expect = 6e-022
Identities = 42/72 (58%), Positives = 53/72 (73%)
Frame = +2 / +1
Query: 323 CSGSKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTG 502
C+ + C N TI++ F V QFE+LF+ RN P+AHA GFWDY +FITAAA +EP+GF TTG
Sbjct: 28 CAKATDCKNKTISELFTVDQFESLFSHRNAPLAHAQGFWDYHSFITAAAHYEPKGFGTTG 207
Query: 503 GKQMQMMELCAF 538
G +Q EL AF
Sbjct: 208 GDIVQKXELAAF 243
>gb|BQ700447.1|BQ700447 NXRV105_G09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV105_G09 5' similar to Arabidopsis thaliana
sequence At1g05850 putative endochitinase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 575
Score = 104 bits (221), Expect = 6e-022
Identities = 42/72 (58%), Positives = 53/72 (73%)
Frame = +2 / +2
Query: 323 CSGSKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTG 502
C+ + C N TI++ F V QFE+LF+ RN P+AHA GFWDY +FITAAA +EP+GF TTG
Sbjct: 224 CAKATDCKNKTISELFTVDQFESLFSHRNAPLAHAQGFWDYHSFITAAAHYEPKGFGTTG 403
Query: 503 GKQMQMMELCAF 538
G +Q EL AF
Sbjct: 404 GDIVQKXELAAF 439
>gb|BQ702490.1|BQ702490 NXSI_129_C03_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_129_C03 5' similar to Arabidopsis thaliana
sequence At1g05850 putative endochitinase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 504
Score = 104 bits (221), Expect = 6e-022
Identities = 42/72 (58%), Positives = 53/72 (73%)
Frame = +2 / +2
Query: 323 CSGSKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTG 502
C+ + C N TI++ F V QFE+LF+ RN P+AHA GFWDY +FITAAA +EP+GF TTG
Sbjct: 161 CAKATDCKNKTISELFTVDQFESLFSHRNAPLAHAQGFWDYHSFITAAAHYEPKGFGTTG 340
Query: 503 GKQMQMMELCAF 538
G +Q EL AF
Sbjct: 341 GDIVQKRELAAF 376
>gb|BQ703196.1|BQ703196 NXSI_137_G10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_137_G10 5' similar to Arabidopsis thaliana
sequence At1g05850 putative endochitinase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 513
Score = 104 bits (221), Expect = 6e-022
Identities = 42/72 (58%), Positives = 53/72 (73%)
Frame = +2 / +1
Query: 323 CSGSKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTG 502
C+ + C N TI++ F V QFE+LF+ RN P+AHA GFWDY +FITAAA +EP+GF TTG
Sbjct: 130 CAKATDCKNKTISELFTVDQFESLFSHRNAPLAHAQGFWDYHSFITAAAHYEPKGFGTTG 309
Query: 503 GKQMQMMELCAF 538
G +Q EL AF
Sbjct: 310 GDIVQKXELAAF 345
>gb|CF478512.1|CF478512 RTWW3_20_B12.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_20_B12_A022 5', mRNA sequence
Length = 746
Score = 104 bits (221), Expect = 6e-022
Identities = 42/72 (58%), Positives = 53/72 (73%)
Frame = +2 / +3
Query: 323 CSGSKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTG 502
C+ + C N TI++ F V QFE+LF+ RN P+AHA GFWDY +FITAAA +EP+GF TTG
Sbjct: 171 CAKATDCKNKTISELFTVDQFESLFSHRNAPLAHAQGFWDYHSFITAAAHYEPKGFGTTG 350
Query: 503 GKQMQMMELCAF 538
G +Q EL AF
Sbjct: 351 GDIVQKRELAAF 386
>gb|DR010816.1|DR010816 HEAT1_1_B04.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_1_B04_A029 5', mRNA sequence
Length = 794
Score = 104 bits (221), Expect = 6e-022
Identities = 42/72 (58%), Positives = 53/72 (73%)
Frame = +2 / +3
Query: 323 CSGSKYCCNDTITDFFKVYQFENLFAKRNTPVAHAVGFWDYQAFITAAALFEPQGFCTTG 502
C+ + C N TI++ F V QFE+LF+ RN P+AHA GFWDY +FITAAA +EP+GF TTG
Sbjct: 201 CAKATDCKNKTISELFTVDQFESLFSHRNAPLAHAQGFWDYHSFITAAAHYEPKGFGTTG 380
Query: 503 GKQMQMMELCAF 538
G +Q EL AF
Sbjct: 381 GDIVQKRELAAF 416
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 183,622,527
Number of Sequences: 355925
Number of extensions: 2168949
Number of successful extensions: 43030
Number of sequences better than 1.0e-020: 92
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 7001290530
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)