TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3829259.2.1
(1019 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR094115.1|DR094115 STRR1_12_C04.g1_A033 Stem Response R... 154 9e-079
gb|DR177347.1|DR177347 RTMNUT1_4_F09.g1_A029 Roots minus mi... 154 4e-078
gb|BX255434.1|BX255434 BX255434 Pinus pinaster differenciat... 154 6e-078
gb|DR178249.1|DR178249 RTMNUT1_10_G12.b1_A029 Roots minus m... 154 4e-075
gb|BX678886.1|BX678886 BX678886 RS Pinus pinaster cDNA clon... 142 6e-075
gb|BG275620.1|BG275620 NXSI_144_A03_F NXSI (Nsf Xylem Side ... 142 2e-070
gb|DR744924.1|DR744924 RTCU1_25_G06.g1_A029 Roots plus adde... 142 1e-061
gb|CX648482.1|CX648482 COLD1_29_A03.b1_A029 Root cold Pinus... 154 8e-051
gb|CF669954.1|CF669954 RTCNT1_47_D05.b1_A029 Root control P... 149 1e-050
gb|CV034162.1|CV034162 RTNACL1_39_C12.b1_A029 Roots plus ad... 158 1e-047
gb|CF399227.1|CF399227 RTDS3_27_G09.b1_A022 Drought-stresse... 154 1e-047
gb|DN457731.1|DN457731 EST953530 Sequencing ESTs from loblo... 142 7e-045
gb|DR744847.1|DR744847 RTCU1_25_G06.b1_A029 Roots plus adde... 152 1e-042
gb|DT626805.1|DT626805 EST1159881 Sequencing ESTs from lobl... 142 1e-042
gb|CF669944.1|CF669944 RTCNT1_47_C05.b1_A029 Root control P... 150 6e-041
gb|DR686277.1|DR686277 EST1076355 Normalized pine embryo li... 149 6e-041
gb|CV136624.1|CV136624 EST847833 Sequencing ESTs from loblo... 142 6e-040
gb|DN460210.1|DN460210 EST956009 Sequencing ESTs from loblo... 142 6e-040
gb|CV135596.1|CV135596 EST846805 Sequencing ESTs from loblo... 142 2e-038
gb|DR691522.1|DR691522 EST1081609 Normalized pine embryo li... 142 2e-038
gb|DR081623.1|DR081623 RTFEPL1_31_B03.b1_A029 Roots plus ad... 158 5e-038
gb|CF399316.1|CF399316 RTDS3_27_G09.g1_A022 Drought-stresse... 142 8e-038
gb|CF670014.1|CF670014 RTCNT1_47_C05.g1_A029 Root control P... 142 1e-037
gb|CF670024.1|CF670024 RTCNT1_47_D05.g1_A029 Root control P... 142 1e-037
gb|CO168955.1|CO168955 NDL1_3_E08.g1_A029 Needles control P... 142 2e-035
dbj|BD236521.1| Materials and method for modification of pl... 142 2e-035
gb|DT633427.1|DT633427 EST1148358 Normalized pine embryo li... 149 2e-035
gb|DR688563.1|DR688563 EST1078648 Normalized pine embryo li... 111 4e-035
gb|CX649795.1|CX649795 COLD1_41_C01.g1_A029 Root cold Pinus... 100 8e-035
gb|CX649716.1|CX649716 COLD1_41_C01.b1_A029 Root cold Pinus... 100 1e-034
gb|BX682993.1|BX682993 BX682993 Pinus pinaster differenciat... 73 6e-023
gb|CO166082.1|CO166082 FLD1_59_E03.b1_A029 Root flooded Pin... 68 1e-022
gb|DR745589.1|DR745589 RTCU1_30_F04.g1_A029 Roots plus adde... 68 1e-022
gb|BX253780.1|BX253780 BX253780 Pinus pinaster differenciat... 68 2e-022
gb|DR056997.1|DR056997 RTNIT1_1_H08.g1_A029 Roots minus nit... 105 5e-022
>gb|DR094115.1|DR094115 STRR1_12_C04.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_12_C04_A033 5', mRNA sequence
Length = 847
Score = 154 bits (330), Expect(3) = 9e-079
Identities = 62/91 (68%), Positives = 72/91 (79%)
Frame = -3 / +3
Query: 726 SSNIGCEAYNLGTGKGTSVLEIVNAFEKASGKKIPLVMGQRRPGDAEILFSSPAKAEREL 547
+S+IGC AYNLGTG+GTSVLE+V AFEKASGK IPL RRPGDA +++S KAEREL
Sbjct: 429 ASDIGCTAYNLGTGRGTSVLEMVAAFEKASGKSIPLKFCPRRPGDATAVYASTEKAEREL 608
Query: 546 HWKAKYGITEMCGDLWNWASKSPYGYAASES 454
WKAKYGI EMC D WNWA ++P+GY ES
Sbjct: 609 GWKAKYGIEEMCRDQWNWARQNPWGYILPES 701
Score = 142 bits (304), Expect(3) = 9e-079
Identities = 52/69 (75%), Positives = 61/69 (88%)
Frame = -2 / +3
Query: 991 SDPEWNIILLRYFNPVGAHPSGYLGEDPCGTPNNLMPFVQQIAVGRRPSLTIFGNNYATK 812
+DP+W IILLRYFNPVGAHPSG +GEDP G PNNLMPF+QQ+AVGR+P L ++GN+Y TK
Sbjct: 168 ADPDWRIILLRYFNPVGAHPSGQIGEDPKGIPNNLMPFIQQVAVGRQPVLNVYGNDYQTK 347
Query: 811 DGTGVRDYI 785
DGT VRDYI
Sbjct: 348 DGTAVRDYI 374
Score = 100 bits (214), Expect(2) = 8e-044
Identities = 46/68 (67%), Positives = 51/68 (75%)
Frame = +3 / -1
Query: 786 I*SRTPVPSFVA*LFPNIVSDGLLPTAIC*TKGIRLLGVPHGSSPRYPLG*APTGLKYLS 965
+*SRT VPSFV * P S G LPTA C KG+RL G+P GSSP +PLG*APTGLKYLS
Sbjct: 373 M*SRTAVPSFVW*SLPYTFSTGCLPTATCWMKGMRLFGIPFGSSPIWPLG*APTGLKYLS 194
Query: 966 KMIFHSGS 989
K+I SGS
Sbjct: 193 KIILQSGS 170
Score = 97.3 bits (206), Expect(2) = 8e-044
Identities = 46/82 (56%), Positives = 55/82 (67%)
Frame = +2 / -1
Query: 473 P*GLLLAQFHRSPHISVMPYFAFQWSSLSAFAGDEKRISASPGRRWPMTKGIFFPEAFSN 652
P G LAQFH S HIS +PY AFQ +S SAF+ + ASPGR +G+ FP+AFSN
Sbjct: 682 PHGFCLAQFH*SLHISSIPYLAFQPNSRSAFSVEA*TAVASPGRLGQNFRGMLFPDAFSN 503
Query: 653 ALTISNTDVPFPVPRLYASHPM 718
A TIS T+VP PVP+L A PM
Sbjct: 502 AATISRTEVPRPVPKL*AVQPM 437
Score = 84.5 bits (178), Expect(2) = 3e-025
Identities = 31/68 (45%), Positives = 49/68 (72%)
Frame = +2 / -3
Query: 785 DIITNPCPILCCVVISKYC*RWPPANCNLLNEGHKVVRSSTWVFTKVSTGVSPNWIKVPK 964
++I+N C ILC V+I+ Y W P++ +LL+E H+V+ +S W+FT ++T VS NW++VP+
Sbjct: 374 NVISNRCAILCLVIITIYVQHWLPSHSHLLDERHEVIWNSLWIFTNLATWVSSNWVEVPQ 195
Query: 965 QNDIPFRI 988
QN P I
Sbjct: 194 QNYSPIWI 171
Score = 51.5 bits (106), Expect(2) = 3e-025
Identities = 29/93 (31%), Positives = 47/93 (50%)
Frame = +1 / -3
Query: 442 IQLRRLRCRVSIRALASPVPQVSAHFCDAIFRFPVELSLCFCRR*KENLSITRTPLAHDQ 621
I + LR V+ L+ P+P +S HF IF P + + R + SI+ P Q
Sbjct: 713 ISICTLRENVTPWVLSCPIPLISTHFFYPIFSLPTQFTFSLLCRGINSCSISWPPWTELQ 534
Query: 622 RDFLSRSLLKCIDYLQH*CSFSGSKVVCFTSYV 720
R+ LS LLKC + ++ + S + ++ T+YV
Sbjct: 533 RNALS*CLLKCSHHFKNRGTTSSA*IISCTAYV 435
Score = 37.7 bits (76), Expect(3) = 9e-079
Identities = 14/20 (70%), Positives = 19/20 (95%)
Frame = -3 / +3
Query: 783 HVVDLAEGHLFALRKLFESS 724
HVVDLA+GH+ AL+KLF++S
Sbjct: 375 HVVDLADGHISALQKLFKAS 434
>gb|DR177347.1|DR177347 RTMNUT1_4_F09.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_4_F09_A029 5', mRNA sequence
Length = 746
Score = 154 bits (330), Expect(3) = 4e-078
Identities = 62/91 (68%), Positives = 72/91 (79%)
Frame = -3 / -2
Query: 726 SSNIGCEAYNLGTGKGTSVLEIVNAFEKASGKKIPLVMGQRRPGDAEILFSSPAKAEREL 547
+S+IGC AYNLGTG+GTSVLE+V AFEKASGK IPL RRPGDA +++S KAEREL
Sbjct: 466 ASDIGCTAYNLGTGRGTSVLEMVAAFEKASGKSIPLKFCPRRPGDATAVYASTEKAEREL 287
Query: 546 HWKAKYGITEMCGDLWNWASKSPYGYAASES 454
WKAKYGI EMC D WNWA ++P+GY ES
Sbjct: 286 GWKAKYGIEEMCRDQWNWARQNPWGYILPES 194
Score = 139 bits (299), Expect(3) = 4e-078
Identities = 51/69 (73%), Positives = 60/69 (86%)
Frame = -2 / -2
Query: 991 SDPEWNIILLRYFNPVGAHPSGYLGEDPCGTPNNLMPFVQQIAVGRRPSLTIFGNNYATK 812
+DP+W II LRYFNPVGAHPSG +GEDP G PNNLMPF+QQ+AVGR+P L ++GN+Y TK
Sbjct: 727 ADPDWRIIXLRYFNPVGAHPSGQIGEDPKGIPNNLMPFIQQVAVGRQPVLNVYGNDYQTK 548
Query: 811 DGTGVRDYI 785
DGT VRDYI
Sbjct: 547 DGTAVRDYI 521
Score = 97.3 bits (206), Expect(2) = 9e-043
Identities = 44/68 (64%), Positives = 50/68 (73%)
Frame = +3 / +3
Query: 786 I*SRTPVPSFVA*LFPNIVSDGLLPTAIC*TKGIRLLGVPHGSSPRYPLG*APTGLKYLS 965
+*SRT VPSFV * P S G LPTA C KG+RL G+P GSSP +PLG*APTGLKYL
Sbjct: 522 M*SRTAVPSFVW*SLPYTFSTGCLPTATCWMKGMRLFGIPFGSSPIWPLG*APTGLKYLX 701
Query: 966 KMIFHSGS 989
++I SGS
Sbjct: 702 QIILQSGS 725
Score = 97.3 bits (206), Expect(2) = 9e-043
Identities = 46/82 (56%), Positives = 55/82 (67%)
Frame = +2 / +3
Query: 473 P*GLLLAQFHRSPHISVMPYFAFQWSSLSAFAGDEKRISASPGRRWPMTKGIFFPEAFSN 652
P G LAQFH S HIS +PY AFQ +S SAF+ + ASPGR +G+ FP+AFSN
Sbjct: 213 PHGFCLAQFH*SLHISSIPYLAFQPNSRSAFSVEA*TAVASPGRLGQNFRGMLFPDAFSN 392
Query: 653 ALTISNTDVPFPVPRLYASHPM 718
A TIS T+VP PVP+L A PM
Sbjct: 393 AATISRTEVPRPVPKL*AVQPM 458
Score = 81.7 bits (172), Expect(2) = 2e-024
Identities = 30/68 (44%), Positives = 48/68 (70%)
Frame = +2 / +2
Query: 785 DIITNPCPILCCVVISKYC*RWPPANCNLLNEGHKVVRSSTWVFTKVSTGVSPNWIKVPK 964
++I+N C ILC V+I+ Y W P++ +LL+E H+V+ +S W+FT ++T VS NW++VP+
Sbjct: 521 NVISNRCAILCLVIITIYVQHWLPSHSHLLDERHEVIWNSLWIFTNLATWVSSNWVEVPQ 700
Query: 965 QNDIPFRI 988
N P I
Sbjct: 701 XNYSPIWI 724
Score = 51.5 bits (106), Expect(2) = 2e-024
Identities = 29/93 (31%), Positives = 47/93 (50%)
Frame = +1 / +2
Query: 442 IQLRRLRCRVSIRALASPVPQVSAHFCDAIFRFPVELSLCFCRR*KENLSITRTPLAHDQ 621
I + LR V+ L+ P+P +S HF IF P + + R + SI+ P Q
Sbjct: 182 ISICTLRENVTPWVLSCPIPLISTHFFYPIFSLPTQFTFSLLCRGINSCSISWPPWTELQ 361
Query: 622 RDFLSRSLLKCIDYLQH*CSFSGSKVVCFTSYV 720
R+ LS LLKC + ++ + S + ++ T+YV
Sbjct: 362 RNALS*CLLKCSHHFKNRGTTSSA*IISCTAYV 460
Score = 37.7 bits (76), Expect(3) = 4e-078
Identities = 14/20 (70%), Positives = 19/20 (95%)
Frame = -3 / -2
Query: 783 HVVDLAEGHLFALRKLFESS 724
HVVDLA+GH+ AL+KLF++S
Sbjct: 520 HVVDLADGHISALQKLFKAS 461
>gb|BX255434.1|BX255434 BX255434 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP005G04, mRNA sequence
Length = 668
Score = 154 bits (331), Expect(3) = 6e-078
Identities = 62/91 (68%), Positives = 72/91 (79%)
Frame = -3 / +2
Query: 726 SSNIGCEAYNLGTGKGTSVLEIVNAFEKASGKKIPLVMGQRRPGDAEILFSSPAKAEREL 547
+S+IGC AYNLGTG+GTSVLE+V AFEKASGK IPL RRPGDA +++S KAEREL
Sbjct: 257 ASDIGCTAYNLGTGRGTSVLEMVAAFEKASGKSIPLKFCPRRPGDATAVYASTEKAEREL 436
Query: 546 HWKAKYGITEMCGDLWNWASKSPYGYAASES 454
WKAKYGI EMC D WNWA ++P+GY ES
Sbjct: 437 DWKAKYGIEEMCRDQWNWARQNPWGYILPES 529
Score = 138 bits (297), Expect(3) = 6e-078
Identities = 51/67 (76%), Positives = 59/67 (88%)
Frame = -2 / +2
Query: 985 PEWNIILLRYFNPVGAHPSGYLGEDPCGTPNNLMPFVQQIAVGRRPSLTIFGNNYATKDG 806
P+W IILLRYFNPVGAHPSG +GEDP G PNNLMPF+QQ+AVGR+P L ++GN+Y TKDG
Sbjct: 2 PDWRIILLRYFNPVGAHPSGQIGEDPKGIPNNLMPFIQQVAVGRQPVLNVYGNDYQTKDG 181
Query: 805 TGVRDYI 785
T VRDYI
Sbjct: 182 TAVRDYI 202
Score = 98.2 bits (208), Expect(2) = 5e-043
Identities = 46/82 (56%), Positives = 55/82 (67%)
Frame = +2 / -3
Query: 473 P*GLLLAQFHRSPHISVMPYFAFQWSSLSAFAGDEKRISASPGRRWPMTKGIFFPEAFSN 652
P G LAQFH S HIS +PY AFQ +S SAF+ + ASPGR +G+ FP+AFSN
Sbjct: 510 PHGFCLAQFH*SLHISSIPYLAFQSNSRSAFSVEA*TAVASPGRLGQNLRGMLFPDAFSN 331
Query: 653 ALTISNTDVPFPVPRLYASHPM 718
A TIS T+VP PVP+L A PM
Sbjct: 330 AATISRTEVPRPVPKL*AVQPM 265
Score = 97.3 bits (206), Expect(2) = 5e-043
Identities = 45/67 (67%), Positives = 49/67 (73%)
Frame = +3 / -3
Query: 786 I*SRTPVPSFVA*LFPNIVSDGLLPTAIC*TKGIRLLGVPHGSSPRYPLG*APTGLKYLS 965
+*SRT VPSFV * P S G LPTA C KG+RL G+P GSSP PLG*APTGLKYLS
Sbjct: 201 M*SRTAVPSFVW*SLPYTFSTGCLPTATCWMKGMRLFGIPFGSSPICPLG*APTGLKYLS 22
Query: 966 KMIFHSG 986
K+I SG
Sbjct: 21 KIILQSG 1
Score = 84.9 bits (179), Expect(2) = 1e-024
Identities = 31/65 (47%), Positives = 47/65 (72%)
Frame = +2 / -2
Query: 785 DIITNPCPILCCVVISKYC*RWPPANCNLLNEGHKVVRSSTWVFTKVSTGVSPNWIKVPK 964
++I+N C ILC V+I+ Y W P + +LL+E H+V+ +S W+FT +ST VS NW++VP+
Sbjct: 202 NVISNRCAILCLVIITIYVQHWLPTHSHLLDERHEVIWNSLWIFTNLSTWVSSNWVEVPQ 23
Query: 965 QNDIP 979
QN P
Sbjct: 22 QNYSP 8
Score = 48.7 bits (100), Expect(2) = 1e-024
Identities = 24/79 (30%), Positives = 42/79 (53%)
Frame = +1 / -2
Query: 484 LASPVPQVSAHFCDAIFRFPVELSLCFCRR*KENLSITRTPLAHDQRDFLSRSLLKCIDY 663
L+ P+P +S HF IF P++ + R + SI+ P +R+ LS LLKC +
Sbjct: 499 LSCPIPLISTHFFYPIFSLPIQFTFSLLCRGINSCSISWPPWTELERNALS*CLLKCSHH 320
Query: 664 LQH*CSFSGSKVVCFTSYV 720
++ + S + ++ T+YV
Sbjct: 319 FKNRGTTSSA*IISCTTYV 263
Score = 37.7 bits (76), Expect(3) = 6e-078
Identities = 14/20 (70%), Positives = 19/20 (95%)
Frame = -3 / +2
Query: 783 HVVDLAEGHLFALRKLFESS 724
HVVDLA+GH+ AL+KLF++S
Sbjct: 203 HVVDLADGHISALQKLFKAS 262
>gb|DR178249.1|DR178249 RTMNUT1_10_G12.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_10_G12_A029 3', mRNA sequence
Length = 777
Score = 154 bits (330), Expect(3) = 4e-075
Identities = 62/91 (68%), Positives = 72/91 (79%)
Frame = -3 / +3
Query: 726 SSNIGCEAYNLGTGKGTSVLEIVNAFEKASGKKIPLVMGQRRPGDAEILFSSPAKAEREL 547
+S+IGC AYNLGTG+GTSVLE+V AFEKASGK IPL RRPGDA +++S KAEREL
Sbjct: 249 ASDIGCTAYNLGTGRGTSVLEMVAAFEKASGKSIPLKFCPRRPGDATAVYASTEKAEREL 428
Query: 546 HWKAKYGITEMCGDLWNWASKSPYGYAASES 454
WKAKYGI EMC D WNWA ++P+GY ES
Sbjct: 429 GWKAKYGIEEMCRDQWNWARQNPWGYILPES 521
Score = 129 bits (277), Expect(3) = 4e-075
Identities = 49/63 (77%), Positives = 56/63 (88%)
Frame = -2 / +3
Query: 973 IILLRYFNPVGAHPSGYLGEDPCGTPNNLMPFVQQIAVGRRPSLTIFGNNYATKDGTGVR 794
IILLRYFNPVGAHPSG +GEDP G PNNLMPF+QQ+AVGR+P L ++GN+Y TKDGT VR
Sbjct: 6 IILLRYFNPVGAHPSGQIGEDPKGIPNNLMPFIQQVAVGRQPVLNVYGNDYQTKDGTAVR 185
Query: 793 DYI 785
DYI
Sbjct: 186 DYI 194
Score = 97.3 bits (206), Expect(2) = 6e-042
Identities = 46/82 (56%), Positives = 55/82 (67%)
Frame = +2 / -3
Query: 473 P*GLLLAQFHRSPHISVMPYFAFQWSSLSAFAGDEKRISASPGRRWPMTKGIFFPEAFSN 652
P G LAQFH S HIS +PY AFQ +S SAF+ + ASPGR +G+ FP+AFSN
Sbjct: 502 PHGFCLAQFH*SLHISSIPYLAFQPNSRSAFSVEA*TAVASPGRLGQNFRGMLFPDAFSN 323
Query: 653 ALTISNTDVPFPVPRLYASHPM 718
A TIS T+VP PVP+L A PM
Sbjct: 322 AATISRTEVPRPVPKL*AVQPM 257
Score = 94.5 bits (200), Expect(2) = 6e-042
Identities = 43/63 (68%), Positives = 48/63 (76%)
Frame = +3 / -3
Query: 786 I*SRTPVPSFVA*LFPNIVSDGLLPTAIC*TKGIRLLGVPHGSSPRYPLG*APTGLKYLS 965
+*SRT VPSFV * P S G LPTA C KG+RL G+P GSSP +PLG*APTGLKYLS
Sbjct: 193 M*SRTAVPSFVW*SLPYTFSTGCLPTATCWMKGMRLFGIPFGSSPIWPLG*APTGLKYLS 14
Query: 966 KMI 974
K+I
Sbjct: 13 KII 5
Score = 83.1 bits (175), Expect(2) = 7e-025
Identities = 29/62 (46%), Positives = 47/62 (75%)
Frame = +2 / -2
Query: 785 DIITNPCPILCCVVISKYC*RWPPANCNLLNEGHKVVRSSTWVFTKVSTGVSPNWIKVPK 964
++I+N C ILC V+I+ Y W P++ +LL+E H+V+ +S W+FT ++T VS NW++VP+
Sbjct: 194 NVISNRCAILCLVIITIYVQHWLPSHSHLLDERHEVIWNSLWIFTNLATWVSSNWVEVPQ 15
Query: 965 QN 970
QN
Sbjct: 14 QN 9
Score = 51.5 bits (106), Expect(2) = 7e-025
Identities = 29/93 (31%), Positives = 47/93 (50%)
Frame = +1 / -2
Query: 442 IQLRRLRCRVSIRALASPVPQVSAHFCDAIFRFPVELSLCFCRR*KENLSITRTPLAHDQ 621
I + LR V+ L+ P+P +S HF IF P + + R + SI+ P Q
Sbjct: 533 ISICTLRENVTPWVLSCPIPLISTHFFYPIFSLPTQFTFSLLCRGINSCSISWPPWTELQ 354
Query: 622 RDFLSRSLLKCIDYLQH*CSFSGSKVVCFTSYV 720
R+ LS LLKC + ++ + S + ++ T+YV
Sbjct: 353 RNALS*CLLKCSHHFKNRGTTSSA*IISCTAYV 255
Score = 37.7 bits (76), Expect(3) = 4e-075
Identities = 14/20 (70%), Positives = 19/20 (95%)
Frame = -3 / +3
Query: 783 HVVDLAEGHLFALRKLFESS 724
HVVDLA+GH+ AL+KLF++S
Sbjct: 195 HVVDLADGHISALQKLFKAS 254
>gb|BX678886.1|BX678886 BX678886 RS Pinus pinaster cDNA clone RS16E09, mRNA sequence
Length = 661
Score = 142 bits (304), Expect(3) = 6e-075
Identities = 52/69 (75%), Positives = 61/69 (88%)
Frame = -2 / +3
Query: 991 SDPEWNIILLRYFNPVGAHPSGYLGEDPCGTPNNLMPFVQQIAVGRRPSLTIFGNNYATK 812
+DP+W IILLRYFNPVGAHPSG +GEDP G PNNLMPF+QQ+AVGR+P L ++GN+Y TK
Sbjct: 159 ADPDWRIILLRYFNPVGAHPSGQIGEDPKGIPNNLMPFIQQVAVGRQPVLNVYGNDYQTK 338
Query: 811 DGTGVRDYI 785
DGT VRDYI
Sbjct: 339 DGTAVRDYI 365
Score = 141 bits (302), Expect(3) = 6e-075
Identities = 57/79 (72%), Positives = 64/79 (81%)
Frame = -3 / +3
Query: 726 SSNIGCEAYNLGTGKGTSVLEIVNAFEKASGKKIPLVMGQRRPGDAEILFSSPAKAEREL 547
+S+IGC AYNLGTG+GTSVLE+V AFEKASGK IPL RRPGDA +++S KAEREL
Sbjct: 420 ASDIGCTAYNLGTGRGTSVLEMVAAFEKASGKSIPLKFCPRRPGDATAVYASTEKAEREL 599
Query: 546 HWKAKYGITEMCGDLWNWA 490
WKAKYGI EMC D WNWA
Sbjct: 600 DWKAKYGIEEMCRDQWNWA 656
Score = 100 bits (214), Expect(2) = 5e-043
Identities = 46/68 (67%), Positives = 51/68 (75%)
Frame = +3 / -1
Query: 786 I*SRTPVPSFVA*LFPNIVSDGLLPTAIC*TKGIRLLGVPHGSSPRYPLG*APTGLKYLS 965
+*SRT VPSFV * P S G LPTA C KG+RL G+P GSSP +PLG*APTGLKYLS
Sbjct: 364 M*SRTAVPSFVW*SLPYTFSTGCLPTATCWMKGMRLFGIPFGSSPIWPLG*APTGLKYLS 185
Query: 966 KMIFHSGS 989
K+I SGS
Sbjct: 184 KIILQSGS 161
Score = 94.5 bits (200), Expect(2) = 5e-043
Identities = 44/77 (57%), Positives = 53/77 (68%)
Frame = +2 / -1
Query: 488 LAQFHRSPHISVMPYFAFQWSSLSAFAGDEKRISASPGRRWPMTKGIFFPEAFSNALTIS 667
LAQFH S HIS +PY AFQ +S SAF+ + ASPGR +G+ FP+AFSNA TIS
Sbjct: 658 LAQFH*SLHISSIPYLAFQSNSRSAFSVEA*TAVASPGRLGQNLRGMLFPDAFSNAATIS 479
Query: 668 NTDVPFPVPRLYASHPM 718
T+VP PVP+L A PM
Sbjct: 478 RTEVPRPVPKL*AVQPM 428
Score = 84.0 bits (177), Expect(2) = 9e-024
Identities = 31/68 (45%), Positives = 48/68 (70%)
Frame = +2 / -3
Query: 785 DIITNPCPILCCVVISKYC*RWPPANCNLLNEGHKVVRSSTWVFTKVSTGVSPNWIKVPK 964
++I+N C ILC V+I+ Y W P + +LL+E H+V+ +S W+FT ++T VS NW++VP+
Sbjct: 365 NVISNRCAILCLVIITIYVQHWLPTHSHLLDERHEVIWNSLWIFTNLATWVSSNWVEVPQ 186
Query: 965 QNDIPFRI 988
QN P I
Sbjct: 185 QNYSPIWI 162
Score = 46.9 bits (96), Expect(2) = 9e-024
Identities = 23/76 (30%), Positives = 40/76 (52%)
Frame = +1 / -3
Query: 493 PVPQVSAHFCDAIFRFPVELSLCFCRR*KENLSITRTPLAHDQRDFLSRSLLKCIDYLQH 672
P+P +S HF IF P++ + R + SI+ P +R+ LS LLKC + ++
Sbjct: 653 PIPLISTHFFYPIFSLPIQFTFSLLCRGINSCSISWPPWTELERNALS*CLLKCSHHFKN 474
Query: 673 *CSFSGSKVVCFTSYV 720
+ S + ++ T+YV
Sbjct: 473 RGTTSSA*IISCTTYV 426
Score = 37.7 bits (76), Expect(3) = 6e-075
Identities = 14/20 (70%), Positives = 19/20 (95%)
Frame = -3 / +3
Query: 783 HVVDLAEGHLFALRKLFESS 724
HVVDLA+GH+ AL+KLF++S
Sbjct: 366 HVVDLADGHISALQKLFKAS 425
>gb|BG275620.1|BG275620 NXSI_144_A03_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_144_A03 5' similar to Arabidopsis thaliana
sequence At1g12780 uridine diphosphate glucose epimerase
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 522
Score = 142 bits (304), Expect(3) = 2e-070
Identities = 52/69 (75%), Positives = 61/69 (88%)
Frame = -2 / +1
Query: 991 SDPEWNIILLRYFNPVGAHPSGYLGEDPCGTPNNLMPFVQQIAVGRRPSLTIFGNNYATK 812
+DP+W IILLRYFNPVGAHPSG +GEDP G PNNLMPF+QQ+AVGR+P L ++GN+Y TK
Sbjct: 1 ADPDWRIILLRYFNPVGAHPSGQIGEDPKGIPNNLMPFIQQVAVGRQPVLNVYGNDYQTK 180
Query: 811 DGTGVRDYI 785
DGT VRDYI
Sbjct: 181 DGTAVRDYI 207
Score = 126 bits (269), Expect(3) = 2e-070
Identities = 53/86 (61%), Positives = 61/86 (70%)
Frame = -3 / +1
Query: 726 SSNIGCEAYNLGTGKGTSVLEIVNAFEKASGKKIPLVMGQRRPGDAEILFSSPAKAEREL 547
+S+IGC AYNLGTG+GTSVLE+V AFEKASGK IPL RRPGDA +++S EREL
Sbjct: 262 ASDIGCTAYNLGTGRGTSVLEMVAAFEKASGKSIPLKFCPRRPGDATAVYASTEXXEREL 441
Query: 546 HWKAKYGITEMCGDLWNWASKSPYGY 469
AKYGI EMC WA P+GY
Sbjct: 442 GXXAKYGIXEMCXXXXXWAKXKPWGY 519
Score = 100 bits (214), Expect(2) = 3e-040
Identities = 46/68 (67%), Positives = 51/68 (75%)
Frame = +3 / -2
Query: 786 I*SRTPVPSFVA*LFPNIVSDGLLPTAIC*TKGIRLLGVPHGSSPRYPLG*APTGLKYLS 965
+*SRT VPSFV * P S G LPTA C KG+RL G+P GSSP +PLG*APTGLKYLS
Sbjct: 206 M*SRTAVPSFVW*SLPYTFSTGCLPTATCWMKGMRLFGIPFGSSPIWPLG*APTGLKYLS 27
Query: 966 KMIFHSGS 989
K+I SGS
Sbjct: 26 KIILQSGS 3
Score = 85.4 bits (180), Expect(2) = 3e-040
Identities = 41/83 (49%), Positives = 50/83 (60%)
Frame = +2 / -2
Query: 470 YP*GLLLAQFHRSPHISVMPYFAFQWSSLSAFAGDEKRISASPGRRWPMTKGIFFPEAFS 649
YP G AQ S HIS +PY A Q +S S F+ + ASPGR +G+ P+AFS
Sbjct: 518 YPHGFXFAQXXXSXHISXIPYLAXQPNSRSXFSVEA*TAVASPGRLGQNFRGMLXPDAFS 339
Query: 650 NALTISNTDVPFPVPRLYASHPM 718
NA TIS T+VP PVP+L A PM
Sbjct: 338 NAATISRTEVPRPVPKL*AVQPM 270
Score = 37.7 bits (76), Expect(3) = 2e-070
Identities = 14/20 (70%), Positives = 19/20 (95%)
Frame = -3 / +1
Query: 783 HVVDLAEGHLFALRKLFESS 724
HVVDLA+GH+ AL+KLF++S
Sbjct: 208 HVVDLADGHISALQKLFKAS 267
>gb|DR744924.1|DR744924 RTCU1_25_G06.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_25_G06_A029 5', mRNA sequence
Length = 691
Score = 142 bits (304), Expect(3) = 1e-061
Identities = 52/69 (75%), Positives = 61/69 (88%)
Frame = -2 / +2
Query: 991 SDPEWNIILLRYFNPVGAHPSGYLGEDPCGTPNNLMPFVQQIAVGRRPSLTIFGNNYATK 812
+DP+W IILLRYFNPVGAHPSG +GEDP G PNNLMPF+QQ+AVGR+P L ++GN+Y TK
Sbjct: 254 ADPDWRIILLRYFNPVGAHPSGQIGEDPKGIPNNLMPFIQQVAVGRQPVLNVYGNDYQTK 433
Query: 811 DGTGVRDYI 785
DGT VRDYI
Sbjct: 434 DGTAVRDYI 460
Score = 100 bits (214), Expect(2) = 7e-034
Identities = 46/68 (67%), Positives = 51/68 (75%)
Frame = +3 / -2
Query: 786 I*SRTPVPSFVA*LFPNIVSDGLLPTAIC*TKGIRLLGVPHGSSPRYPLG*APTGLKYLS 965
+*SRT VPSFV * P S G LPTA C KG+RL G+P GSSP +PLG*APTGLKYLS
Sbjct: 459 M*SRTAVPSFVW*SLPYTFSTGCLPTATCWMKGMRLFGIPFGSSPIWPLG*APTGLKYLS 280
Query: 966 KMIFHSGS 989
K+I SGS
Sbjct: 279 KIILQSGS 256
Score = 96.8 bits (205), Expect(3) = 1e-061
Identities = 41/59 (69%), Positives = 48/59 (81%)
Frame = -3 / +2
Query: 726 SSNIGCEAYNLGTGKGTSVLEIVNAFEKASGKKIPLVMGQRRPGDAEILFSSPAKAERE 550
+S+IGC AYNLGTG+GTSVLE+V AFEKASGK IPL RRPGDA +++S KAERE
Sbjct: 515 ASDIGCTAYNLGTGRGTSVLEMVAAFEKASGKSIPLKFCPRRPGDATAVYASTEKAERE 691
Score = 63.8 bits (133), Expect(2) = 7e-034
Identities = 30/56 (53%), Positives = 37/56 (66%)
Frame = +2 / -2
Query: 551 SLSAFAGDEKRISASPGRRWPMTKGIFFPEAFSNALTISNTDVPFPVPRLYASHPM 718
S SAF+ + ASPGR +G+ FP+AFSNA TIS T+VP PVP+L A PM
Sbjct: 690 SRSAFSVEA*TAVASPGRLGQNFRGMLFPDAFSNAATISRTEVPRPVPKL*AVQPM 523
Score = 37.7 bits (76), Expect(3) = 1e-061
Identities = 14/20 (70%), Positives = 19/20 (95%)
Frame = -3 / +2
Query: 783 HVVDLAEGHLFALRKLFESS 724
HVVDLA+GH+ AL+KLF++S
Sbjct: 461 HVVDLADGHISALQKLFKAS 520
>gb|CX648482.1|CX648482 COLD1_29_A03.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_29_A03_A029 3', mRNA sequence
Length = 666
Score = 154 bits (330), Expect(3) = 8e-051
Identities = 62/91 (68%), Positives = 72/91 (79%)
Frame = -3 / +1
Query: 726 SSNIGCEAYNLGTGKGTSVLEIVNAFEKASGKKIPLVMGQRRPGDAEILFSSPAKAEREL 547
+S+IGC AYNLGTG+GTSVLE+V AFEKASGK IPL RRPGDA +++S KAEREL
Sbjct: 130 ASDIGCTAYNLGTGRGTSVLEMVAAFEKASGKSIPLKFCPRRPGDATAVYASTEKAEREL 309
Query: 546 HWKAKYGITEMCGDLWNWASKSPYGYAASES 454
WKAKYGI EMC D WNWA ++P+GY ES
Sbjct: 310 GWKAKYGIEEMCRDQWNWARQNPWGYILPES 402
Score = 97.3 bits (206), Expect(2) = 2e-023
Identities = 46/82 (56%), Positives = 55/82 (67%)
Frame = +2 / -2
Query: 473 P*GLLLAQFHRSPHISVMPYFAFQWSSLSAFAGDEKRISASPGRRWPMTKGIFFPEAFSN 652
P G LAQFH S HIS +PY AFQ +S SAF+ + ASPGR +G+ FP+AFSN
Sbjct: 383 PHGFCLAQFH*SLHISSIPYLAFQPNSRSAFSVEA*TAVASPGRLGQNFRGMLFPDAFSN 204
Query: 653 ALTISNTDVPFPVPRLYASHPM 718
A TIS T+VP PVP+L A PM
Sbjct: 203 AATISRTEVPRPVPKL*AVQPM 138
Score = 48.3 bits (99), Expect(3) = 8e-051
Identities = 17/25 (68%), Positives = 21/25 (84%)
Frame = -2 / +1
Query: 859 GRRPSLTIFGNNYATKDGTGVRDYI 785
GR+P L ++GN+Y TKDGT VRDYI
Sbjct: 1 GRQPVLNVYGNDYQTKDGTAVRDYI 75
Score = 37.7 bits (76), Expect(3) = 8e-051
Identities = 14/20 (70%), Positives = 19/20 (95%)
Frame = -3 / +1
Query: 783 HVVDLAEGHLFALRKLFESS 724
HVVDLA+GH+ AL+KLF++S
Sbjct: 76 HVVDLADGHISALQKLFKAS 135
Score = 32.2 bits (64), Expect(2) = 2e-023
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2 / -1
Query: 785 DIITNPCPILCCVVISKYC*RWPPA 859
++I+N C ILC V+I+ Y W P+
Sbjct: 75 NVISNRCAILCLVIITIYVQHWLPS 1
>gb|CF669954.1|CF669954 RTCNT1_47_D05.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_47_D05_A029 3', mRNA sequence
Length = 673
Score = 149 bits (320), Expect(3) = 1e-050
Identities = 60/87 (68%), Positives = 68/87 (78%)
Frame = -3 / +2
Query: 714 GCEAYNLGTGKGTSVLEIVNAFEKASGKKIPLVMGQRRPGDAEILFSSPAKAERELHWKA 535
GC AYNLGTG+GTSVLE+V AFEKASGK IPL RRPGDA +++S KAEREL WKA
Sbjct: 149 GCTAYNLGTGRGTSVLEMVAAFEKASGKSIPLKFCPRRPGDATAVYASTEKAERELGWKA 328
Query: 534 KYGITEMCGDLWNWASKSPYGYAASES 454
KYGI EMC D WNWA ++P+GY ES
Sbjct: 329 KYGIEEMCRDQWNWARQNPWGYILPES 409
Score = 95.0 bits (201), Expect(2) = 8e-023
Identities = 45/81 (55%), Positives = 54/81 (66%)
Frame = +2 / -2
Query: 473 P*GLLLAQFHRSPHISVMPYFAFQWSSLSAFAGDEKRISASPGRRWPMTKGIFFPEAFSN 652
P G LAQFH S HIS +PY AFQ +S SAF+ + ASPGR +G+ FP+AFSN
Sbjct: 390 PHGFCLAQFH*SLHISSIPYLAFQPNSRSAFSVEA*TAVASPGRLGQNFRGMLFPDAFSN 211
Query: 653 ALTISNTDVPFPVPRLYASHP 715
A TIS T+VP PVP+L A P
Sbjct: 210 AATISRTEVPRPVPKL*AVQP 148
Score = 51.9 bits (107), Expect(3) = 1e-050
Identities = 19/27 (70%), Positives = 23/27 (85%)
Frame = -2 / +1
Query: 865 AVGRRPSLTIFGNNYATKDGTGVRDYI 785
AVGR+P L ++GN+Y TKDGT VRDYI
Sbjct: 1 AVGRQPVLNVYGNDYQTKDGTAVRDYI 81
Score = 37.7 bits (76), Expect(3) = 1e-050
Identities = 14/20 (70%), Positives = 19/20 (95%)
Frame = -3 / +1
Query: 783 HVVDLAEGHLFALRKLFESS 724
HVVDLA+GH+ AL+KLF++S
Sbjct: 82 HVVDLADGHISALQKLFKAS 141
Score = 32.7 bits (65), Expect(2) = 8e-023
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2 / -2
Query: 785 DIITNPCPILCCVVISKYC*RWPPAN 862
++I+N C ILC V+I+ Y W P++
Sbjct: 81 NVISNRCAILCLVIITIYVQHWLPSH 4
>gb|CV034162.1|CV034162 RTNACL1_39_C12.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_39_C12_A029 3', mRNA sequence
Length = 720
Score = 158 bits (340), Expect(2) = 1e-047
Identities = 60/91 (65%), Positives = 74/91 (81%)
Frame = -3 / +2
Query: 726 SSNIGCEAYNLGTGKGTSVLEIVNAFEKASGKKIPLVMGQRRPGDAEILFSSPAKAEREL 547
+ ++GCE YNLGTG+GTSVLE+V AFEKASGKKIPL + RRPGD E +++S KAEREL
Sbjct: 125 TKDLGCEVYNLGTGQGTSVLEMVAAFEKASGKKIPLRIADRRPGDVETVYASTEKAEREL 304
Query: 546 HWKAKYGITEMCGDLWNWASKSPYGYAASES 454
+WKAKYG+ EMC D WNW SK+P+GY E+
Sbjct: 305 NWKAKYGVEEMCRDQWNWTSKNPWGYEPPET 397
Score = 120 bits (256), Expect(2) = 1e-031
Identities = 54/86 (62%), Positives = 60/86 (69%)
Frame = +2 / -1
Query: 458 SDAAYP*GLLLAQFHRSPHISVMPYFAFQWSSLSAFAGDEKRISASPGRRWPMTKGIFFP 637
S +YP G LL QFH S HIS PY AFQ++S SAF+ D +S SPG R + KGIFFP
Sbjct: 393 SGGSYPQGFLLVQFHWSRHISSTPYLAFQFNSRSAFSVDA*TVSTSPGLRSAILKGIFFP 214
Query: 638 EAFSNALTISNTDVPFPVPRLYASHP 715
EAFSNA TIS TDVP PVPRL S P
Sbjct: 213 EAFSNAATISRTDVPCPVPRL*TSQP 136
Score = 52.4 bits (108), Expect(2) = 1e-047
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = -2 / +2
Query: 853 RPSLTIFGNNYATKDGTGVRDYI 785
RP LT+FGN+Y TKDGTGVRDYI
Sbjct: 2 RPELTVFGNDYQTKDGTGVRDYI 70
Score = 37.3 bits (75), Expect(2) = 1e-031
Identities = 18/23 (78%), Positives = 18/23 (78%)
Frame = +3 / -1
Query: 786 I*SRTPVPSFVA*LFPNIVSDGL 854
I*S TPVPSFV * FPN VS GL
Sbjct: 69 I*SLTPVPSFV**SFPNTVSSGL 1
>gb|CF399227.1|CF399227 RTDS3_27_G09.b1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_27_G09_A022 3', mRNA sequence
Length = 644
Score = 154 bits (330), Expect(3) = 1e-047
Identities = 62/91 (68%), Positives = 72/91 (79%)
Frame = -3 / +2
Query: 726 SSNIGCEAYNLGTGKGTSVLEIVNAFEKASGKKIPLVMGQRRPGDAEILFSSPAKAEREL 547
+S+IGC AYNLGTG+GTSVLE+V AFEKASGK IPL RRPGDA +++S KAEREL
Sbjct: 107 ASDIGCTAYNLGTGRGTSVLEMVAAFEKASGKSIPLKFCPRRPGDATAVYASTEKAEREL 286
Query: 546 HWKAKYGITEMCGDLWNWASKSPYGYAASES 454
WKAKYGI EMC D WNWA ++P+GY ES
Sbjct: 287 GWKAKYGIEEMCRDQWNWARQNPWGYILPES 379
Score = 97.3 bits (206), Expect(2) = 2e-021
Identities = 46/82 (56%), Positives = 55/82 (67%)
Frame = +2 / -3
Query: 473 P*GLLLAQFHRSPHISVMPYFAFQWSSLSAFAGDEKRISASPGRRWPMTKGIFFPEAFSN 652
P G LAQFH S HIS +PY AFQ +S SAF+ + ASPGR +G+ FP+AFSN
Sbjct: 360 PHGFCLAQFH*SLHISSIPYLAFQPNSRSAFSVEA*TAVASPGRLGQNFRGMLFPDAFSN 181
Query: 653 ALTISNTDVPFPVPRLYASHPM 718
A TIS T+VP PVP+L A PM
Sbjct: 180 AATISRTEVPRPVPKL*AVQPM 115
Score = 37.7 bits (76), Expect(3) = 1e-047
Identities = 14/20 (70%), Positives = 19/20 (95%)
Frame = -3 / +2
Query: 783 HVVDLAEGHLFALRKLFESS 724
HVVDLA+GH+ AL+KLF++S
Sbjct: 53 HVVDLADGHISALQKLFKAS 112
Score = 37.3 bits (75), Expect(3) = 1e-047
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = -2 / +2
Query: 835 FGNNYATKDGTGVRDYI 785
+GN+Y TKDGT VRDYI
Sbjct: 2 YGNDYQTKDGTAVRDYI 52
Score = 25.4 bits (49), Expect(2) = 2e-021
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +2 / -2
Query: 785 DIITNPCPILCCVVIS 832
++I+N C ILC V+I+
Sbjct: 52 NVISNRCAILCLVIIT 5
>gb|DN457731.1|DN457731 EST953530 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIH331 5' end, mRNA sequence
Length = 925
Score = 142 bits (304), Expect(3) = 7e-045
Identities = 52/69 (75%), Positives = 61/69 (88%)
Frame = -2 / +2
Query: 991 SDPEWNIILLRYFNPVGAHPSGYLGEDPCGTPNNLMPFVQQIAVGRRPSLTIFGNNYATK 812
+DP+W IILLRYFNPVGAHPSG +GEDP G PNNLMPF+QQ+AVGR+P L ++GN+Y TK
Sbjct: 587 ADPDWRIILLRYFNPVGAHPSGQIGEDPKGIPNNLMPFIQQVAVGRQPVLNVYGNDYQTK 766
Query: 811 DGTGVRDYI 785
DGT VRDYI
Sbjct: 767 DGTAVRDYI 793
Score = 100 bits (214), Expect(2) = 2e-023
Identities = 46/68 (67%), Positives = 51/68 (75%)
Frame = +3 / -2
Query: 786 I*SRTPVPSFVA*LFPNIVSDGLLPTAIC*TKGIRLLGVPHGSSPRYPLG*APTGLKYLS 965
+*SRT VPSFV * P S G LPTA C KG+RL G+P GSSP +PLG*APTGLKYLS
Sbjct: 792 M*SRTAVPSFVW*SLPYTFSTGCLPTATCWMKGMRLFGIPFGSSPIWPLG*APTGLKYLS 613
Query: 966 KMIFHSGS 989
K+I SGS
Sbjct: 612 KIILQSGS 589
Score = 40.0 bits (81), Expect(3) = 7e-045
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = -3 / +3
Query: 714 GCEAYNLGTGKGTSVLEIVNA 652
GC AYNL TG+GTSVLE+V A
Sbjct: 861 GCTAYNLRTGRGTSVLEMVAA 923
Score = 37.7 bits (76), Expect(3) = 7e-045
Identities = 14/20 (70%), Positives = 19/20 (95%)
Frame = -3 / +2
Query: 783 HVVDLAEGHLFALRKLFESS 724
HVVDLA+GH+ AL+KLF++S
Sbjct: 794 HVVDLADGHISALQKLFKAS 853
Score = 29.0 bits (57), Expect(2) = 2e-023
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2 / -1
Query: 650 NALTISNTDVPFPVPRLYASHP 715
NA TIS T+VP PV +L A P
Sbjct: 925 NAATISRTEVPRPVRKL*AVQP 860
>gb|DR744847.1|DR744847 RTCU1_25_G06.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_25_G06_A029 3', mRNA sequence
Length = 591
Score = 152 bits (326), Expect(3) = 1e-042
Identities = 62/91 (68%), Positives = 71/91 (78%)
Frame = -3 / +2
Query: 726 SSNIGCEAYNLGTGKGTSVLEIVNAFEKASGKKIPLVMGQRRPGDAEILFSSPAKAEREL 547
+S+IGC AYNLGTG+GTSVLE+V AFEKASGK IPL RRPGDA +++S KAEREL
Sbjct: 83 ASDIGCTAYNLGTGRGTSVLEMVAAFEKASGKSIPLKFCPRRPGDATAVYASTEKAEREL 262
Query: 546 HWKAKYGITEMCGDLWNWASKSPYGYAASES 454
WKAKYGI EMC D WNWA ++P GY ES
Sbjct: 263 GWKAKYGIEEMCRDQWNWARQNPRGYILPES 355
Score = 37.7 bits (76), Expect(3) = 1e-042
Identities = 14/20 (70%), Positives = 19/20 (95%)
Frame = -3 / +2
Query: 783 HVVDLAEGHLFALRKLFESS 724
HVVDLA+GH+ AL+KLF++S
Sbjct: 29 HVVDLADGHISALQKLFKAS 88
Score = 22.6 bits (43), Expect(3) = 1e-042
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -2 / +2
Query: 811 DGTGVRDYI 785
DGT VRDYI
Sbjct: 2 DGTAVRDYI 28
>gb|DT626805.1|DT626805 EST1159881 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAR51 5' end, mRNA sequence
Length = 942
Score = 142 bits (304), Expect(3) = 1e-042
Identities = 52/69 (75%), Positives = 61/69 (88%)
Frame = -2 / +2
Query: 991 SDPEWNIILLRYFNPVGAHPSGYLGEDPCGTPNNLMPFVQQIAVGRRPSLTIFGNNYATK 812
+DP+W IILLRYFNPVGAHPSG +GEDP G PNNLMPF+QQ+AVGR+P L ++GN+Y TK
Sbjct: 587 ADPDWRIILLRYFNPVGAHPSGQIGEDPKGIPNNLMPFIQQVAVGRQPVLNVYGNDYQTK 766
Query: 811 DGTGVRDYI 785
DGT VRDYI
Sbjct: 767 DGTAVRDYI 793
Score = 100 bits (214), Expect(2) = 1e-023
Identities = 46/68 (67%), Positives = 51/68 (75%)
Frame = +3 / -1
Query: 786 I*SRTPVPSFVA*LFPNIVSDGLLPTAIC*TKGIRLLGVPHGSSPRYPLG*APTGLKYLS 965
+*SRT VPSFV * P S G LPTA C KG+RL G+P GSSP +PLG*APTGLKYLS
Sbjct: 792 M*SRTAVPSFVW*SLPYTFSTGCLPTATCWMKGMRLFGIPFGSSPIWPLG*APTGLKYLS 613
Query: 966 KMIFHSGS 989
K+I SGS
Sbjct: 612 KIILQSGS 589
Score = 37.7 bits (76), Expect(3) = 1e-042
Identities = 14/20 (70%), Positives = 19/20 (95%)
Frame = -3 / +2
Query: 783 HVVDLAEGHLFALRKLFESS 724
HVVDLA+GH+ AL+KLF++S
Sbjct: 794 HVVDLADGHISALQKLFKAS 853
Score = 32.2 bits (64), Expect(3) = 1e-042
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = -3 / +1
Query: 690 TGKGTSVLEIVNAFEK 643
TG+GTSVLE+V AFEK
Sbjct: 883 TGRGTSVLEMVAAFEK 930
Score = 29.5 bits (58), Expect(2) = 1e-023
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = +2 / -2
Query: 644 FSNALTISNTDVPFPV 691
FSNA TIS T+VP PV
Sbjct: 929 FSNAATISRTEVPRPV 882
>gb|CF669944.1|CF669944 RTCNT1_47_C05.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_47_C05_A029 3', mRNA sequence
Length = 611
Score = 150 bits (323), Expect(2) = 6e-041
Identities = 60/89 (67%), Positives = 70/89 (78%)
Frame = -3 / +3
Query: 720 NIGCEAYNLGTGKGTSVLEIVNAFEKASGKKIPLVMGQRRPGDAEILFSSPAKAERELHW 541
++GC AYNLGTG+GTSVLE+V AFEKASGK IPL RRPGDA +++S KAEREL W
Sbjct: 81 HLGCTAYNLGTGRGTSVLEMVAAFEKASGKSIPLKFCPRRPGDATAVYASTEKAERELGW 260
Query: 540 KAKYGITEMCGDLWNWASKSPYGYAASES 454
KAKYGI EMC D WNWA ++P+GY ES
Sbjct: 261 KAKYGIEEMCRDQWNWARQNPWGYILPES 347
Score = 37.7 bits (76), Expect(2) = 6e-041
Identities = 14/20 (70%), Positives = 19/20 (95%)
Frame = -3 / +1
Query: 783 HVVDLAEGHLFALRKLFESS 724
HVVDLA+GH+ AL+KLF++S
Sbjct: 19 HVVDLADGHISALQKLFKAS 78
>gb|DR686277.1|DR686277 EST1076355 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABE31 3' end, mRNA sequence
Length = 547
Score = 149 bits (321), Expect(2) = 6e-041
Identities = 56/69 (81%), Positives = 63/69 (91%)
Frame = -2 / +2
Query: 991 SDPEWNIILLRYFNPVGAHPSGYLGEDPCGTPNNLMPFVQQIAVGRRPSLTIFGNNYATK 812
+DP+W IILLRYFNPVGAHPSG++GEDP G PNNLMPFVQQ+AV RRP LT+FGN+Y TK
Sbjct: 230 ADPDWKIILLRYFNPVGAHPSGFIGEDPRGIPNNLMPFVQQVAVERRPELTVFGNDYQTK 409
Query: 811 DGTGVRDYI 785
DGTGVRDYI
Sbjct: 410 DGTGVRDYI 436
Score = 114 bits (243), Expect(2) = 5e-027
Identities = 52/68 (76%), Positives = 55/68 (80%)
Frame = +3 / -2
Query: 786 I*SRTPVPSFVA*LFPNIVSDGLLPTAIC*TKGIRLLGVPHGSSPRYPLG*APTGLKYLS 965
I*S TPVPSFV * FPN VS GLL TA C*T G+RL G+P GSSP PLG*APTGLKYLS
Sbjct: 435 I*SLTPVPSFV**SFPNTVSSGLLSTATC*TNGMRLFGIPRGSSPINPLG*APTGLKYLS 256
Query: 966 KMIFHSGS 989
K+IF SGS
Sbjct: 255 KIIFQSGS 232
Score = 38.6 bits (78), Expect(2) = 6e-041
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = -3 / +2
Query: 726 SSNIGCEAYNLGTGKGTSV 670
+ ++GCE YNLGTG+GTSV
Sbjct: 491 TKDLGCEVYNLGTGQGTSV 547
Score = 27.6 bits (54), Expect(2) = 5e-027
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +2 / -2
Query: 671 TDVPFPVPRLYASHP 715
TDVP PVPRL S P
Sbjct: 546 TDVPCPVPRL*TSQP 502
>gb|CV136624.1|CV136624 EST847833 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIAE04 5' end, mRNA sequence
Length = 906
Score = 142 bits (304), Expect(3) = 6e-040
Identities = 52/69 (75%), Positives = 61/69 (88%)
Frame = -2 / +2
Query: 991 SDPEWNIILLRYFNPVGAHPSGYLGEDPCGTPNNLMPFVQQIAVGRRPSLTIFGNNYATK 812
+DP+W IILLRYFNPVGAHPSG +GEDP G PNNLMPF+QQ+AVGR+P L ++GN+Y TK
Sbjct: 587 ADPDWRIILLRYFNPVGAHPSGQIGEDPKGIPNNLMPFIQQVAVGRQPVLNVYGNDYQTK 766
Query: 811 DGTGVRDYI 785
DGT VRDYI
Sbjct: 767 DGTAVRDYI 793
Score = 37.7 bits (76), Expect(3) = 6e-040
Identities = 14/20 (70%), Positives = 19/20 (95%)
Frame = -3 / +2
Query: 783 HVVDLAEGHLFALRKLFESS 724
HVVDLA+GH+ AL+KLF++S
Sbjct: 794 HVVDLADGHISALQKLFKAS 853
Score = 23.5 bits (45), Expect(3) = 6e-040
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -3 / +2
Query: 726 SSNIGCEAYNL 694
+S+IGC AYNL
Sbjct: 848 ASDIGCTAYNL 880
>gb|DN460210.1|DN460210 EST956009 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIHV83 5' end, mRNA sequence
Length = 880
Score = 142 bits (304), Expect(3) = 6e-040
Identities = 52/69 (75%), Positives = 61/69 (88%)
Frame = -2 / +2
Query: 991 SDPEWNIILLRYFNPVGAHPSGYLGEDPCGTPNNLMPFVQQIAVGRRPSLTIFGNNYATK 812
+DP+W IILLRYFNPVGAHPSG +GEDP G PNNLMPF+QQ+AVGR+P L ++GN+Y TK
Sbjct: 587 ADPDWRIILLRYFNPVGAHPSGQIGEDPKGIPNNLMPFIQQVAVGRQPVLNVYGNDYQTK 766
Query: 811 DGTGVRDYI 785
DGT VRDYI
Sbjct: 767 DGTAVRDYI 793
Score = 37.7 bits (76), Expect(3) = 6e-040
Identities = 14/20 (70%), Positives = 19/20 (95%)
Frame = -3 / +2
Query: 783 HVVDLAEGHLFALRKLFESS 724
HVVDLA+GH+ AL+KLF++S
Sbjct: 794 HVVDLADGHISALQKLFKAS 853
Score = 23.5 bits (45), Expect(3) = 6e-040
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -3 / +2
Query: 726 SSNIGCEAYNL 694
+S+IGC AYNL
Sbjct: 848 ASDIGCTAYNL 880
>gb|CV135596.1|CV135596 EST846805 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PICME12 5' end, mRNA sequence
Length = 852
Score = 142 bits (304), Expect(2) = 2e-038
Identities = 52/69 (75%), Positives = 61/69 (88%)
Frame = -2 / +3
Query: 991 SDPEWNIILLRYFNPVGAHPSGYLGEDPCGTPNNLMPFVQQIAVGRRPSLTIFGNNYATK 812
+DP+W IILLRYFNPVGAHPSG +GEDP G PNNLMPF+QQ+AVGR+P L ++GN+Y TK
Sbjct: 585 ADPDWRIILLRYFNPVGAHPSGQIGEDPKGIPNNLMPFIQQVAVGRQPVLNVYGNDYQTK 764
Query: 811 DGTGVRDYI 785
DGT VRDYI
Sbjct: 765 DGTAVRDYI 791
Score = 37.7 bits (76), Expect(2) = 2e-038
Identities = 14/20 (70%), Positives = 19/20 (95%)
Frame = -3 / +3
Query: 783 HVVDLAEGHLFALRKLFESS 724
HVVDLA+GH+ AL+KLF++S
Sbjct: 792 HVVDLADGHISALQKLFKAS 851
>gb|DR691522.1|DR691522 EST1081609 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAD946 3' end, mRNA sequence
Length = 847
Score = 142 bits (304), Expect(2) = 2e-038
Identities = 52/69 (75%), Positives = 61/69 (88%)
Frame = -2 / +2
Query: 991 SDPEWNIILLRYFNPVGAHPSGYLGEDPCGTPNNLMPFVQQIAVGRRPSLTIFGNNYATK 812
+DP+W IILLRYFNPVGAHPSG +GEDP G PNNLMPF+QQ+AVGR+P L ++GN+Y TK
Sbjct: 578 ADPDWRIILLRYFNPVGAHPSGQIGEDPKGIPNNLMPFIQQVAVGRQPVLNVYGNDYQTK 757
Query: 811 DGTGVRDYI 785
DGT VRDYI
Sbjct: 758 DGTAVRDYI 784
Score = 37.7 bits (76), Expect(2) = 2e-038
Identities = 14/20 (70%), Positives = 19/20 (95%)
Frame = -3 / +2
Query: 783 HVVDLAEGHLFALRKLFESS 724
HVVDLA+GH+ AL+KLF++S
Sbjct: 785 HVVDLADGHISALQKLFKAS 844
>gb|DR081623.1|DR081623 RTFEPL1_31_B03.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_31_B03_A029 3', mRNA sequence
Length = 689
Score = 158 bits (340), Expect = 5e-038
Identities = 60/91 (65%), Positives = 74/91 (81%)
Frame = -3 / +3
Query: 726 SSNIGCEAYNLGTGKGTSVLEIVNAFEKASGKKIPLVMGQRRPGDAEILFSSPAKAEREL 547
+ ++GCE YNLGTG+GTSVLE+V AFEKASGKKIPL + RRPGD E +++S KAEREL
Sbjct: 24 TKDLGCEVYNLGTGQGTSVLEMVAAFEKASGKKIPLRIADRRPGDVETVYASTEKAEREL 203
Query: 546 HWKAKYGITEMCGDLWNWASKSPYGYAASES 454
+WKAKYG+ EMC D WNW SK+P+GY E+
Sbjct: 204 NWKAKYGVEEMCRDQWNWTSKNPWGYEPPET 296
Score = 120 bits (256), Expect = 2e-026
Identities = 54/86 (62%), Positives = 60/86 (69%)
Frame = +2 / -2
Query: 458 SDAAYP*GLLLAQFHRSPHISVMPYFAFQWSSLSAFAGDEKRISASPGRRWPMTKGIFFP 637
S +YP G LL QFH S HIS PY AFQ++S SAF+ D +S SPG R + KGIFFP
Sbjct: 292 SGGSYPQGFLLVQFHWSRHISSTPYLAFQFNSRSAFSVDA*TVSTSPGLRSAILKGIFFP 113
Query: 638 EAFSNALTISNTDVPFPVPRLYASHP 715
EAFSNA TIS TDVP PVPRL S P
Sbjct: 112 EAFSNAATISRTDVPCPVPRL*TSQP 35
>gb|CF399316.1|CF399316 RTDS3_27_G09.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_27_G09_A022 5', mRNA sequence
Length = 781
Score = 142 bits (304), Expect(2) = 8e-038
Identities = 52/69 (75%), Positives = 61/69 (88%)
Frame = -2 / +3
Query: 991 SDPEWNIILLRYFNPVGAHPSGYLGEDPCGTPNNLMPFVQQIAVGRRPSLTIFGNNYATK 812
+DP+W IILLRYFNPVGAHPSG +GEDP G PNNLMPF+QQ+AVGR+P L ++GN+Y TK
Sbjct: 516 ADPDWRIILLRYFNPVGAHPSGQIGEDPKGIPNNLMPFIQQVAVGRQPVLNVYGNDYQTK 695
Query: 811 DGTGVRDYI 785
DGT VRDYI
Sbjct: 696 DGTAVRDYI 722
Score = 35.9 bits (72), Expect(2) = 8e-038
Identities = 13/19 (68%), Positives = 18/19 (94%)
Frame = -3 / +3
Query: 783 HVVDLAEGHLFALRKLFES 727
HVVDLA+GH+ AL+KLF++
Sbjct: 723 HVVDLADGHISALQKLFKA 779
>gb|CF670014.1|CF670014 RTCNT1_47_C05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_47_C05_A029 5', mRNA sequence
Length = 801
Score = 142 bits (304), Expect(2) = 1e-037
Identities = 52/69 (75%), Positives = 61/69 (88%)
Frame = -2 / +3
Query: 991 SDPEWNIILLRYFNPVGAHPSGYLGEDPCGTPNNLMPFVQQIAVGRRPSLTIFGNNYATK 812
+DP+W IILLRYFNPVGAHPSG +GEDP G PNNLMPF+QQ+AVGR+P L ++GN+Y TK
Sbjct: 543 ADPDWRIILLRYFNPVGAHPSGQIGEDPKGIPNNLMPFIQQVAVGRQPVLNVYGNDYQTK 722
Query: 811 DGTGVRDYI 785
DGT VRDYI
Sbjct: 723 DGTAVRDYI 749
Score = 35.0 bits (70), Expect(2) = 1e-037
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = -3 / +3
Query: 783 HVVDLAEGHLFALRKLF 733
HVVDLA+GH+ AL+KLF
Sbjct: 750 HVVDLADGHISALQKLF 800
>gb|CF670024.1|CF670024 RTCNT1_47_D05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_47_D05_A029 5', mRNA sequence
Length = 800
Score = 142 bits (304), Expect(2) = 1e-037
Identities = 52/69 (75%), Positives = 61/69 (88%)
Frame = -2 / +1
Query: 991 SDPEWNIILLRYFNPVGAHPSGYLGEDPCGTPNNLMPFVQQIAVGRRPSLTIFGNNYATK 812
+DP+W IILLRYFNPVGAHPSG +GEDP G PNNLMPF+QQ+AVGR+P L ++GN+Y TK
Sbjct: 541 ADPDWRIILLRYFNPVGAHPSGQIGEDPKGIPNNLMPFIQQVAVGRQPVLNVYGNDYQTK 720
Query: 811 DGTGVRDYI 785
DGT VRDYI
Sbjct: 721 DGTAVRDYI 747
Score = 35.0 bits (70), Expect(2) = 1e-037
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = -3 / +1
Query: 783 HVVDLAEGHLFALRKLF 733
HVVDLA+GH+ AL+KLF
Sbjct: 748 HVVDLADGHISALQKLF 798
>gb|CO168955.1|CO168955 NDL1_3_E08.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_3_E08_A029 5', mRNA sequence
Length = 810
Score = 142 bits (304), Expect(2) = 2e-035
Identities = 52/69 (75%), Positives = 61/69 (88%)
Frame = -2 / +2
Query: 991 SDPEWNIILLRYFNPVGAHPSGYLGEDPCGTPNNLMPFVQQIAVGRRPSLTIFGNNYATK 812
+DP+W IILLRYFNPVGAHPSG +GEDP G PNNLMPF+QQ+AVGR+P L ++GN+Y TK
Sbjct: 548 ADPDWRIILLRYFNPVGAHPSGQIGEDPKGIPNNLMPFIQQVAVGRQPVLNVYGNDYQTK 727
Query: 811 DGTGVRDYI 785
DGT VRDYI
Sbjct: 728 DGTAVRDYI 754
Score = 28.1 bits (55), Expect(2) = 2e-035
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = -3 / +2
Query: 783 HVVDLAEGHLFALR 742
HVVDLA+GH+ AL+
Sbjct: 755 HVVDLADGHISALQ 796
>dbj|BD236521.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 323
Score = 142 bits (304), Expect(2) = 2e-035
Identities = 52/69 (75%), Positives = 61/69 (88%)
Frame = -2 / +2
Query: 991 SDPEWNIILLRYFNPVGAHPSGYLGEDPCGTPNNLMPFVQQIAVGRRPSLTIFGNNYATK 812
+DP+W IILLRYFNPVGAHPSG +GEDP G PNNLMPF+QQ+AVGR+P L ++GN+Y TK
Sbjct: 74 ADPDWRIILLRYFNPVGAHPSGQIGEDPKGIPNNLMPFIQQVAVGRQPVLNVYGNDYQTK 253
Query: 811 DGTGVRDYI 785
DGT VRDYI
Sbjct: 254 DGTAVRDYI 280
Score = 28.1 bits (55), Expect(2) = 2e-035
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = -3 / +2
Query: 783 HVVDLAEGHLFALR 742
HVVDLA+GH+ AL+
Sbjct: 281 HVVDLADGHISALQ 322
>gb|DT633427.1|DT633427 EST1148358 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFU78 3' end, mRNA sequence
Length = 808
Score = 149 bits (321), Expect = 2e-035
Identities = 56/69 (81%), Positives = 63/69 (91%)
Frame = -2 / +2
Query: 991 SDPEWNIILLRYFNPVGAHPSGYLGEDPCGTPNNLMPFVQQIAVGRRPSLTIFGNNYATK 812
+DP+W IILLRYFNPVGAHPSG++GEDP G PNNLMPFVQQ+AV RRP LT+FGN+Y TK
Sbjct: 542 ADPDWKIILLRYFNPVGAHPSGFIGEDPRGIPNNLMPFVQQVAVERRPELTVFGNDYQTK 721
Query: 811 DGTGVRDYI 785
DGTGVRDYI
Sbjct: 722 DGTGVRDYI 748
Score = 114 bits (243), Expect = 1e-024
Identities = 52/68 (76%), Positives = 55/68 (80%)
Frame = +3 / -2
Query: 786 I*SRTPVPSFVA*LFPNIVSDGLLPTAIC*TKGIRLLGVPHGSSPRYPLG*APTGLKYLS 965
I*S TPVPSFV * FPN VS GLL TA C*T G+RL G+P GSSP PLG*APTGLKYLS
Sbjct: 747 I*SLTPVPSFV**SFPNTVSSGLLSTATC*TNGMRLFGIPRGSSPINPLG*APTGLKYLS 568
Query: 966 KMIFHSGS 989
K+IF SGS
Sbjct: 567 KIIFQSGS 544
>gb|DR688563.1|DR688563 EST1078648 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAC779 3' end, mRNA sequence
Length = 943
Score = 111 bits (238), Expect(3) = 4e-035
Identities = 40/54 (74%), Positives = 48/54 (88%)
Frame = -2 / +1
Query: 991 SDPEWNIILLRYFNPVGAHPSGYLGEDPCGTPNNLMPFVQQIAVGRRPSLTIFG 830
+DP+W IILLRYFNPVGAHPSG +GEDP G PNNLMPF+QQ+AVGR+P L ++G
Sbjct: 601 ADPDWRIILLRYFNPVGAHPSGQIGEDPKGIPNNLMPFIQQVAVGRQPVLNVYG 762
Score = 85.8 bits (181), Expect(3) = 2e-022
Identities = 36/54 (66%), Positives = 41/54 (75%)
Frame = +3 / -3
Query: 828 FPNIVSDGLLPTAIC*TKGIRLLGVPHGSSPRYPLG*APTGLKYLSKMIFHSGS 989
+P S G LPTA C KG+RL G+P GSSP +PLG*APTGLKYLSK+I SGS
Sbjct: 764 YPYTFSTGCLPTATCWMKGMRLFGIPFGSSPIWPLG*APTGLKYLSKIILQSGS 603
Score = 45.1 bits (92), Expect(3) = 4e-035
Identities = 19/33 (57%), Positives = 25/33 (75%)
Frame = -3 / +3
Query: 822 TQQRMGQGFVIISHVVDLAEGHLFALRKLFESS 724
T+QRMG HVVDLA+GH+ AL+KLF++S
Sbjct: 771 TKQRMGTAVRDYIHVVDLADGHISALQKLFKAS 869
Score = 31.3 bits (62), Expect(3) = 2e-022
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +2 / -1
Query: 737 SFLNAKRCPSARSTT*DIITNPCPILCCVVIS 832
SF +A+ PSA+STT* PILC V+I+
Sbjct: 856 SF*SAEM*PSAKSTT*M*SRTAVPILCLVIIT 761
Score = 29.9 bits (59), Expect(3) = 4e-035
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = -3 / +1
Query: 690 TGKGTSVLEIVNAFE 646
TG+GTSVLE+V AFE
Sbjct: 898 TGRGTSVLEMVAAFE 942
Score = 26.7 bits (52), Expect(3) = 2e-022
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2 / -3
Query: 647 SNALTISNTDVPFPV 691
SNA TIS T+VP PV
Sbjct: 941 SNAATISRTEVPRPV 897
>gb|CX649795.1|CX649795 COLD1_41_C01.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_41_C01_A029 5', mRNA sequence
Length = 634
Score = 99.6 bits (211), Expect(3) = 8e-035
Identities = 36/59 (61%), Positives = 45/59 (76%)
Frame = -3 / -3
Query: 630 KIPLVMGQRRPGDAEILFSSPAKAERELHWKAKYGITEMCGDLWNWASKSPYGYAASES 454
KIPL + RRPGD E +++S KAEREL+WKAKYG+ EMC D WNW SK+P+GY E+
Sbjct: 494 KIPLRIADRRPGDVETVYASTEKAERELNWKAKYGVEEMCRDQWNWTSKNPWGYEPPET 318
Score = 70.7 bits (148), Expect(2) = 3e-022
Identities = 32/58 (55%), Positives = 38/58 (65%)
Frame = +2 / +1
Query: 458 SDAAYP*GLLLAQFHRSPHISVMPYFAFQWSSLSAFAGDEKRISASPGRRWPMTKGIF 631
S +YP G LL QFH S HIS PY AFQ++S SAF+ D +S SPG R + KGIF
Sbjct: 322 SGGSYPQGFLLVQFHWSRHISSTPYLAFQFNSRSAFSVDA*TVSTSPGLRSAILKGIF 495
Score = 62.0 bits (129), Expect(3) = 8e-035
Identities = 24/32 (75%), Positives = 29/32 (90%)
Frame = -3 / -2
Query: 726 SSNIGCEAYNLGTGKGTSVLEIVNAFEKASGK 631
+ ++GCE YNLGTG+GTSVLE+V AFEKASGK
Sbjct: 588 TKDLGCEVYNLGTGQGTSVLEMVAAFEKASGK 493
Score = 55.1 bits (114), Expect(2) = 3e-022
Identities = 23/29 (79%), Positives = 23/29 (79%)
Frame = +2 / +2
Query: 629 FFPEAFSNALTISNTDVPFPVPRLYASHP 715
FFPEAFSNA TIS TDVP PVPRL S P
Sbjct: 491 FFPEAFSNAATISRTDVPCPVPRL*TSQP 577
Score = 24.4 bits (47), Expect(3) = 8e-035
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -3 / -2
Query: 774 DLAEGHLFALRKLFES 727
DL++GH AL KLF++
Sbjct: 633 DLSDGHTAALDKLFKT 586
>gb|CX649716.1|CX649716 COLD1_41_C01.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_41_C01_A029 3', mRNA sequence
Length = 665
Score = 99.6 bits (211), Expect(3) = 1e-034
Identities = 36/59 (61%), Positives = 45/59 (76%)
Frame = -3 / -3
Query: 630 KIPLVMGQRRPGDAEILFSSPAKAERELHWKAKYGITEMCGDLWNWASKSPYGYAASES 454
KIPL + RRPGD E +++S KAEREL+WKAKYG+ EMC D WNW SK+P+GY E+
Sbjct: 522 KIPLRIADRRPGDVETVYASTEKAERELNWKAKYGVEEMCRDQWNWTSKNPWGYEPPET 346
Score = 70.7 bits (148), Expect(2) = 3e-022
Identities = 32/58 (55%), Positives = 38/58 (65%)
Frame = +2 / +2
Query: 458 SDAAYP*GLLLAQFHRSPHISVMPYFAFQWSSLSAFAGDEKRISASPGRRWPMTKGIF 631
S +YP G LL QFH S HIS PY AFQ++S SAF+ D +S SPG R + KGIF
Sbjct: 350 SGGSYPQGFLLVQFHWSRHISSTPYLAFQFNSRSAFSVDA*TVSTSPGLRSAILKGIF 523
Score = 62.0 bits (129), Expect(3) = 1e-034
Identities = 24/32 (75%), Positives = 29/32 (90%)
Frame = -3 / -2
Query: 726 SSNIGCEAYNLGTGKGTSVLEIVNAFEKASGK 631
+ ++GCE YNLGTG+GTSVLE+V AFEKASGK
Sbjct: 616 TKDLGCEVYNLGTGQGTSVLEMVAAFEKASGK 521
Score = 55.1 bits (114), Expect(2) = 3e-022
Identities = 23/29 (79%), Positives = 23/29 (79%)
Frame = +2 / +3
Query: 629 FFPEAFSNALTISNTDVPFPVPRLYASHP 715
FFPEAFSNA TIS TDVP PVPRL S P
Sbjct: 519 FFPEAFSNAATISRTDVPCPVPRL*TSQP 605
Score = 24.0 bits (46), Expect(3) = 1e-034
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3 / -3
Query: 777 VDLAEGHLFALRKLF 733
+DL++GH AL KLF
Sbjct: 663 LDLSDGHTAALDKLF 619
>gb|BX682993.1|BX682993 BX682993 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 126F07 similar to UDP-glucose 4-epimerase (EC
5.1.3.2), mRNA sequence
Length = 624
Score = 73.0 bits (153), Expect(3) = 6e-023
Identities = 28/60 (46%), Positives = 44/60 (73%)
Frame = -3 / +2
Query: 708 EAYNLGTGKGTSVLEIVNAFEKASGKKIPLVMGQRRPGDAEILFSSPAKAERELHWKAKY 529
+ YN+GTGKG++V E V + ++A+G I +V +RRPGD ++S P+K +REL+W A+Y
Sbjct: 383 DVYNVGTGKGSTVKEFVESCKQATGVNITIVSLERRPGDYAEVYSDPSKIQRELNWFAQY 562
Score = 37.7 bits (76), Expect(3) = 6e-023
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = -2 / +2
Query: 865 AVGRRPSLTIFGNNYATKDGTGVRDYI 785
A+G P L I G +Y T+DGT VRDYI
Sbjct: 239 AMGIIPGLQIKGTDYETRDGTCVRDYI 319
Score = 35.0 bits (70), Expect(3) = 6e-023
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -2 / +2
Query: 973 IILLRYFNPVGAHPSGYLGEDP 908
+ +LRYFN +G+ P G LGE P
Sbjct: 122 VTILRYFNVIGSDPEGRLGEAP 187
>gb|CO166082.1|CO166082 FLD1_59_E03.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_59_E03_A029 3', mRNA sequence
Length = 811
Score = 68.4 bits (143), Expect(4) = 1e-022
Identities = 29/58 (50%), Positives = 38/58 (65%)
Frame = -3 / +1
Query: 702 YNLGTGKGTSVLEIVNAFEKASGKKIPLVMGQRRPGDAEILFSSPAKAERELHWKAKY 529
YN+GTGKG SV E V A + A+G I + RRPGD ++S P+K +EL+W AKY
Sbjct: 268 YNVGTGKGRSVKEFVEACKAATGVNITVEYLGRRPGDYAEVYSDPSKINQELNWSAKY 441
Score = 36.8 bits (74), Expect(4) = 1e-022
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = -2 / +1
Query: 973 IILLRYFNPVGAHPSGYLGEDP 908
++LLRYFN +G+ P G LGE P
Sbjct: 1 VMLLRYFNVIGSDPEGRLGEAP 66
Score = 34.5 bits (69), Expect(4) = 1e-022
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -2 / +1
Query: 865 AVGRRPSLTIFGNNYATKDGTGVRDYI 785
A G P L + G +Y+T DGT +RDYI
Sbjct: 118 ARGIIPGLKVRGTDYSTPDGTCIRDYI 198
Score = 22.1 bits (42), Expect(4) = 1e-022
Identities = 6/14 (42%), Positives = 7/14 (50%)
Frame = -3 / +1
Query: 501 WNWASKSPYGYAAS 460
W W P GY +S
Sbjct: 472 WKWQKAHPNGYGSS 513
>gb|DR745589.1|DR745589 RTCU1_30_F04.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_30_F04_A029 5', mRNA sequence
Length = 638
Score = 68.4 bits (143), Expect(4) = 1e-022
Identities = 29/58 (50%), Positives = 38/58 (65%)
Frame = -3 / +2
Query: 702 YNLGTGKGTSVLEIVNAFEKASGKKIPLVMGQRRPGDAEILFSSPAKAERELHWKAKY 529
YN+GTGKG SV E V A + A+G I + RRPGD ++S P+K +EL+W AKY
Sbjct: 323 YNVGTGKGRSVKEFVEACKAATGVNITVEYLGRRPGDYAEVYSDPSKINQELNWSAKY 496
Score = 36.8 bits (74), Expect(4) = 1e-022
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = -2 / +2
Query: 973 IILLRYFNPVGAHPSGYLGEDP 908
++LLRYFN +G+ P G LGE P
Sbjct: 56 VMLLRYFNVIGSDPEGRLGEAP 121
Score = 34.5 bits (69), Expect(4) = 1e-022
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -2 / +2
Query: 865 AVGRRPSLTIFGNNYATKDGTGVRDYI 785
A G P L + G +Y+T DGT +RDYI
Sbjct: 173 ARGIIPGLKVRGTDYSTPDGTCIRDYI 253
Score = 22.1 bits (42), Expect(4) = 1e-022
Identities = 6/14 (42%), Positives = 7/14 (50%)
Frame = -3 / +2
Query: 501 WNWASKSPYGYAAS 460
W W P GY +S
Sbjct: 527 WKWQKAHPNGYGSS 568
>gb|BX253780.1|BX253780 BX253780 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP088D07, mRNA sequence
Length = 673
Score = 67.5 bits (141), Expect(4) = 2e-022
Identities = 29/58 (50%), Positives = 37/58 (63%)
Frame = -3 / +1
Query: 702 YNLGTGKGTSVLEIVNAFEKASGKKIPLVMGQRRPGDAEILFSSPAKAERELHWKAKY 529
YN+GTGKG SV E V A + A+G I + RRPGD ++S P+K +EL W AKY
Sbjct: 277 YNVGTGKGRSVKEFVEACKAATGVNITVEYLGRRPGDYAEVYSDPSKINQELSWSAKY 450
Score = 36.8 bits (74), Expect(4) = 2e-022
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = -2 / +1
Query: 973 IILLRYFNPVGAHPSGYLGEDP 908
++LLRYFN +G+ P G LGE P
Sbjct: 10 VMLLRYFNVIGSDPEGRLGEAP 75
Score = 34.5 bits (69), Expect(4) = 2e-022
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -2 / +1
Query: 865 AVGRRPSLTIFGNNYATKDGTGVRDYI 785
A G P L + G +Y+T DGT +RDYI
Sbjct: 127 ARGIIPGLKVRGTDYSTPDGTCIRDYI 207
Score = 22.1 bits (42), Expect(4) = 2e-022
Identities = 6/14 (42%), Positives = 7/14 (50%)
Frame = -3 / +1
Query: 501 WNWASKSPYGYAAS 460
W W P GY +S
Sbjct: 481 WKWQKAHPNGYGSS 522
>gb|DR056997.1|DR056997 RTNIT1_1_H08.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_1_H08_A029 5', mRNA sequence
Length = 660
Score = 105 bits (224), Expect = 5e-022
Identities = 39/46 (84%), Positives = 43/46 (93%)
Frame = -2 / +1
Query: 991 SDPEWNIILLRYFNPVGAHPSGYLGEDPCGTPNNLMPFVQQIAVGR 854
+DPEW IILLRYFNPVGAHPSG++GEDP G PNNLMPFVQQ+AVGR
Sbjct: 523 ADPEWKIILLRYFNPVGAHPSGFIGEDPRGIPNNLMPFVQQVAVGR 660
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 559,454,663
Number of Sequences: 355925
Number of extensions: 8577060
Number of successful extensions: 36636
Number of sequences better than 1.0e-020: 39
length of database: 72,425,745
effective HSP length: 53
effective length of database: 53,561,720
effective search space used: 15318651920
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)