TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3336950.2.1
(645 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI397974.1|BI397974 NXPV_112_H04_F NXPV (Nsf Xylem Plani... 127 1e-028
>gb|BI397974.1|BI397974 NXPV_112_H04_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_112_H04 5' similar to Arabidopsis
thaliana sequence At3g10740 putative
alpha-L-arabinofuranosidase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 332
Score = 127 bits (271), Expect = 1e-028
Identities = 53/84 (63%), Positives = 63/84 (75%)
Frame = -1 / +2
Query: 393 QLARKIPDTLFGIFFEEINHAGAGGIWAELVSNRGFEAGGLHTPSNIDPWSIIGDDSSVF 214
Q R+IP TLFG+FF INHAGAGG+WAELVSN FEAGG +TPSNI S D+ SV
Sbjct: 68 QPGRQIPSTLFGLFFXXINHAGAGGLWAELVSNXXFEAGGPNTPSNIXXXSPXXDEXSVL 247
Query: 213 VETDRTSCFSRNIVALRMEVLCDN 142
+ TDR+S F N +ALRME+LCD+
Sbjct: 248 LATDRSSLFELNKIALRMEILCDS 319
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 386,021,987
Number of Sequences: 355925
Number of extensions: 6070486
Number of successful extensions: 63329
Number of sequences better than 1.0e-020: 2
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 8734658490
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)