TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3204398.2.1
(666 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR071668.1|DR071668 RTDK1_21_H06.b1_A029 Roots, dark Pin... 105 4e-022
gb|DR102416.1|DR102416 STRR1_81_A06.b1_A033 Stem Response R... 105 4e-022
gb|DR102479.1|DR102479 STRR1_81_A06.g1_A033 Stem Response R... 105 4e-022
gb|DR682440.1|DR682440 EST1072515 Normalized pine embryo li... 102 3e-021
>gb|DR071668.1|DR071668 RTDK1_21_H06.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_21_H06_A029 3', mRNA sequence
Length = 712
Score = 105 bits (223), Expect = 4e-022
Identities = 44/89 (49%), Positives = 63/89 (70%)
Frame = +1 / +1
Query: 10 NFEFALLAILRCAENPAKYFAKLLRKAMKGLGTDDKTLIRVVVTRTEIDMQYIKAEYFKK 189
+F+ A+ +++C P K+F K+LR A++ LGTD+ L RVVVTR E+DM++IK Y K+
Sbjct: 304 DFQDAVRVVIKCICCPEKHFTKVLRLAIEKLGTDEDALTRVVVTRAEVDMKHIKEAYAKR 483
Query: 190 YKKPLAEAIHSETSGNYRTFLLSLVGPGH 276
K L AI SETSG+Y+ FLL+L+G H
Sbjct: 484 TSKTLEHAIASETSGDYQDFLLTLIGKDH 570
>gb|DR102416.1|DR102416 STRR1_81_A06.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_81_A06_A033 3', mRNA sequence
Length = 798
Score = 105 bits (223), Expect = 4e-022
Identities = 44/89 (49%), Positives = 63/89 (70%)
Frame = +1 / +1
Query: 10 NFEFALLAILRCAENPAKYFAKLLRKAMKGLGTDDKTLIRVVVTRTEIDMQYIKAEYFKK 189
+F+ A+ +++C P K+F K+LR A++ LGTD+ L RVVVTR E+DM++IK Y K+
Sbjct: 223 DFQDAVRVVIKCICCPEKHFTKVLRLAIEKLGTDEDALTRVVVTRAEVDMKHIKEAYAKR 402
Query: 190 YKKPLAEAIHSETSGNYRTFLLSLVGPGH 276
K L AI SETSG+Y+ FLL+L+G H
Sbjct: 403 TSKTLEHAIASETSGDYQDFLLTLIGKDH 489
>gb|DR102479.1|DR102479 STRR1_81_A06.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_81_A06_A033 5', mRNA sequence
Length = 877
Score = 105 bits (223), Expect = 4e-022
Identities = 44/89 (49%), Positives = 63/89 (70%)
Frame = +1 / +1
Query: 10 NFEFALLAILRCAENPAKYFAKLLRKAMKGLGTDDKTLIRVVVTRTEIDMQYIKAEYFKK 189
+F+ A+ +++C P K+F K+LR A++ LGTD+ L RVVVTR E+DM++IK Y K+
Sbjct: 346 DFQDAVRVVIKCICCPEKHFTKVLRLAIEKLGTDEDALTRVVVTRAEVDMKHIKEAYAKR 525
Query: 190 YKKPLAEAIHSETSGNYRTFLLSLVGPGH 276
K L AI SETSG+Y+ FLL+L+G H
Sbjct: 526 TSKTLEHAIASETSGDYQDFLLTLIGKDH 612
>gb|DR682440.1|DR682440 EST1072515 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAA986, mRNA sequence
Length = 827
Score = 102 bits (217), Expect = 3e-021
Identities = 43/89 (48%), Positives = 63/89 (70%)
Frame = +1 / -2
Query: 10 NFEFALLAILRCAENPAKYFAKLLRKAMKGLGTDDKTLIRVVVTRTEIDMQYIKAEYFKK 189
+F+ A+ ++ C + K+F+K+LR A+ GL TD+ L RVVVTR E+DM++IK Y K+
Sbjct: 463 DFQDAVRVLINCICSTEKHFSKVLRLAIGGLRTDEDALTRVVVTRAEVDMKHIKEAYAKR 284
Query: 190 YKKPLAEAIHSETSGNYRTFLLSLVGPGH 276
K L +AI S+TSG+YR FLL+L+G H
Sbjct: 283 TSKTLEQAIASDTSGDYREFLLTLIGKDH 197
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 354,909,827
Number of Sequences: 355925
Number of extensions: 4996094
Number of successful extensions: 36384
Number of sequences better than 1.0e-020: 4
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 9112082005
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)