TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3197099.2.1
(631 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR166003.1|DR166003 RTPHOS1_8_E04.g1_A029 Roots minus ph... 148 2e-044
gb|CO363849.1|CO363849 RTK1_12_E06.b1_A029 Roots minus pota... 148 2e-044
gb|CO365443.1|CO365443 RTK1_17_C10.b1_A029 Roots minus pota... 148 2e-044
gb|CO365399.1|CO365399 RTK1_25_B06.g1_A029 Roots minus pota... 148 2e-044
gb|CO369002.1|CO369002 RTK1_44_F12.b1_A029 Roots minus pota... 148 2e-044
gb|DR091162.1|DR091162 RTAL1_19_F09.g1_A029 Roots plus adde... 148 2e-044
gb|DR017548.1|DR017548 STRS1_17_B02.b1_A034 Shoot tip pitch... 148 2e-044
gb|DR091080.1|DR091080 RTAL1_19_F09.b1_A029 Roots plus adde... 148 2e-044
gb|CF389519.1|CF389519 RTDR2_8_B11.b1_A021 Loblolly pine ro... 148 2e-044
gb|CO365327.1|CO365327 RTK1_25_B06.b1_A029 Roots minus pota... 146 8e-044
gb|BG040229.1|BG040229 NXSI_110_A07_F NXSI (Nsf Xylem Side ... 148 2e-043
gb|DR097217.1|DR097217 STRR1_33_G07.b1_A033 Stem Response R... 145 2e-042
gb|DR095290.1|DR095290 STRR1_20_C06.b1_A033 Stem Response R... 143 9e-042
gb|DR097306.1|DR097306 STRR1_33_G07.g3_A033 Stem Response R... 140 8e-041
gb|CO365529.1|CO365529 RTK1_17_C10.g1_A029 Roots minus pota... 148 4e-035
gb|DR017625.1|DR017625 STRS1_17_B02.g1_A034 Shoot tip pitch... 148 4e-035
gb|DR177283.1|DR177283 RTMNUT1_4_H01.b1_A029 Roots minus mi... 103 5e-033
gb|AI725280.1|AI725280 1146 PtIFG2 Pinus taeda cDNA clone 9... 141 5e-033
gb|CF670190.1|CF670190 RTCNT1_48_D08.g1_A029 Root control P... 138 3e-032
gb|BX679820.1|BX679820 BX679820 RS Pinus pinaster cDNA clon... 138 5e-032
gb|BG317563.1|BG317563 NXPV_003_C07_F NXPV (Nsf Xylem Plani... 134 4e-031
gb|CX713279.1|CX713279 RTPQ1_8_D01.b1_A032 Roots treated wi... 120 8e-031
gb|CX713355.1|CX713355 RTPQ1_8_D01.g1_A032 Roots treated wi... 120 8e-031
gb|DR053121.1|DR053121 RTCA1_9_D06.b1_A029 Roots minus calc... 89 1e-026
gb|DR059299.1|DR059299 RTNIT1_16_H03.g1_A029 Roots minus ni... 106 2e-025
gb|CO165691.1|CO165691 FLD1_56_G11.b1_A029 Root flooded Pin... 106 3e-025
gb|CF393001.1|CF393001 RTDR3_18_E12.g1_A022 Loblolly pine r... 111 5e-024
gb|CO368589.1|CO368589 RTK1_41_C07.g1_A029 Roots minus pota... 109 2e-023
gb|CX651686.1|CX651686 COLD1_54_D03.b1_A029 Root cold Pinus... 109 2e-023
gb|CX651761.1|CX651761 COLD1_54_D03.g1_A029 Root cold Pinus... 109 2e-023
gb|DR019332.1|DR019332 STRS1_29_F12.b1_A034 Shoot tip pitch... 109 2e-023
gb|DR694441.1|DR694441 EST1084533 Normalized pine embryo li... 109 2e-023
gb|CO364433.1|CO364433 RTK1_15_E04.g1_A029 Roots minus pota... 97 7e-023
gb|CO369078.1|CO369078 RTK1_44_F12.g1_A029 Roots minus pota... 107 8e-023
gb|BX681875.1|BX681875 BX681875 RS Pinus pinaster cDNA clon... 106 2e-022
gb|CO165762.1|CO165762 FLD1_56_G11.g1_A029 Root flooded Pin... 106 2e-022
gb|DR020687.1|DR020687 STRS1_38_D07.g1_A034 Shoot tip pitch... 106 2e-022
>gb|DR166003.1|DR166003 RTPHOS1_8_E04.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_8_E04_A029 5', mRNA sequence
Length = 924
Score = 148 bits (317), Expect(2) = 2e-044
Identities = 59/84 (70%), Positives = 61/84 (72%)
Frame = -1 / +3
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CHPTEFDFYLCSHAGIQGTSRPAH HVLWDEN FTAD +Q L NNLCYTYARCTRSV
Sbjct: 465 CHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIV 644
Query: 451 XXXXXXXXXXXXXRFYMEPEMLDN 380
RFYMEPE D+
Sbjct: 645 PPAYYAHLAAFRARFYMEPETSDS 716
Score = 103 bits (219), Expect(2) = 6e-026
Identities = 53/83 (63%), Positives = 59/83 (71%)
Frame = +3 / -3
Query: 381 LSNISGSMXXXXXXXXKCA*YAGGTTQTERVHRA*V*QRLFGNGCISSAVKLFSSQRTWE 560
LS++SGS+ + A*YAGGT +T+RVH A V*QRL C SAV LFSSQRT
Sbjct: 715 LSDVSGSI*NRARNAARWA*YAGGTIETDRVHLAYV*QRLLVKDCNPSAVNLFSSQRT** 536
Query: 561 *AGLLVPWIPA*LQR*KSNSVGW 629
AGLLVP IPA LQR*KSNSVGW
Sbjct: 535 WAGLLVP*IPAWLQR*KSNSVGW 467
Score = 51.0 bits (105), Expect(2) = 2e-044
Identities = 19/30 (63%), Positives = 26/30 (86%)
Frame = -1 / +3
Query: 373 SKTSNGPSGVSVKPLPAVKEKVKRMMFYC* 284
S+++ P+G SV+PLPA+KE VKR+MFYC*
Sbjct: 771 SRSTRVPAGTSVRPLPALKENVKRVMFYC* 860
Score = 34.1 bits (68), Expect(2) = 6e-026
Identities = 15/23 (65%), Positives = 16/23 (69%)
Frame = +3 / -3
Query: 288 Q*NIILFTFSFTAGRGFTETPLG 356
Q*NI L TFSF AG+G T P G
Sbjct: 856 Q*NITLLTFSFKAGKGRTLVPAG 788
>gb|CO363849.1|CO363849 RTK1_12_E06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_12_E06_A029 3', mRNA sequence
Length = 900
Score = 148 bits (317), Expect(2) = 2e-044
Identities = 59/84 (70%), Positives = 61/84 (72%)
Frame = -1 / +3
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CHPTEFDFYLCSHAGIQGTSRPAH HVLWDEN FTAD +Q L NNLCYTYARCTRSV
Sbjct: 231 CHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIV 410
Query: 451 XXXXXXXXXXXXXRFYMEPEMLDN 380
RFYMEPE D+
Sbjct: 411 PPAYYAHLAAFRARFYMEPETSDS 482
Score = 103 bits (219), Expect(2) = 6e-026
Identities = 53/83 (63%), Positives = 59/83 (71%)
Frame = +3 / -3
Query: 381 LSNISGSMXXXXXXXXKCA*YAGGTTQTERVHRA*V*QRLFGNGCISSAVKLFSSQRTWE 560
LS++SGS+ + A*YAGGT +T+RVH A V*QRL C SAV LFSSQRT
Sbjct: 481 LSDVSGSI*NRARNAARWA*YAGGTIETDRVHLAYV*QRLLVKDCNPSAVNLFSSQRT** 302
Query: 561 *AGLLVPWIPA*LQR*KSNSVGW 629
AGLLVP IPA LQR*KSNSVGW
Sbjct: 301 WAGLLVP*IPAWLQR*KSNSVGW 233
Score = 51.0 bits (105), Expect(2) = 2e-044
Identities = 19/30 (63%), Positives = 26/30 (86%)
Frame = -1 / +3
Query: 373 SKTSNGPSGVSVKPLPAVKEKVKRMMFYC* 284
S+++ P+G SV+PLPA+KE VKR+MFYC*
Sbjct: 537 SRSTRVPAGTSVRPLPALKENVKRVMFYC* 626
Score = 34.1 bits (68), Expect(2) = 6e-026
Identities = 15/23 (65%), Positives = 16/23 (69%)
Frame = +3 / -3
Query: 288 Q*NIILFTFSFTAGRGFTETPLG 356
Q*NI L TFSF AG+G T P G
Sbjct: 622 Q*NITLLTFSFKAGKGRTLVPAG 554
>gb|CO365443.1|CO365443 RTK1_17_C10.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_17_C10_A029 3', mRNA sequence
Length = 871
Score = 148 bits (317), Expect(2) = 2e-044
Identities = 59/84 (70%), Positives = 61/84 (72%)
Frame = -1 / +3
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CHPTEFDFYLCSHAGIQGTSRPAH HVLWDEN FTAD +Q L NNLCYTYARCTRSV
Sbjct: 186 CHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIV 365
Query: 451 XXXXXXXXXXXXXRFYMEPEMLDN 380
RFYMEPE D+
Sbjct: 366 PPAYYAHLAAFRARFYMEPETSDS 437
Score = 103 bits (219), Expect(2) = 6e-026
Identities = 53/83 (63%), Positives = 59/83 (71%)
Frame = +3 / -1
Query: 381 LSNISGSMXXXXXXXXKCA*YAGGTTQTERVHRA*V*QRLFGNGCISSAVKLFSSQRTWE 560
LS++SGS+ + A*YAGGT +T+RVH A V*QRL C SAV LFSSQRT
Sbjct: 436 LSDVSGSI*NRARNAARWA*YAGGTIETDRVHLAYV*QRLLVKDCNPSAVNLFSSQRT** 257
Query: 561 *AGLLVPWIPA*LQR*KSNSVGW 629
AGLLVP IPA LQR*KSNSVGW
Sbjct: 256 WAGLLVP*IPAWLQR*KSNSVGW 188
Score = 51.0 bits (105), Expect(2) = 2e-044
Identities = 19/30 (63%), Positives = 26/30 (86%)
Frame = -1 / +3
Query: 373 SKTSNGPSGVSVKPLPAVKEKVKRMMFYC* 284
S+++ P+G SV+PLPA+KE VKR+MFYC*
Sbjct: 492 SRSTRVPAGTSVRPLPALKENVKRVMFYC* 581
Score = 34.1 bits (68), Expect(2) = 6e-026
Identities = 15/23 (65%), Positives = 16/23 (69%)
Frame = +3 / -1
Query: 288 Q*NIILFTFSFTAGRGFTETPLG 356
Q*NI L TFSF AG+G T P G
Sbjct: 577 Q*NITLLTFSFKAGKGRTLVPAG 509
>gb|CO365399.1|CO365399 RTK1_25_B06.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_25_B06_A029 5', mRNA sequence
Length = 845
Score = 148 bits (317), Expect(2) = 2e-044
Identities = 59/84 (70%), Positives = 61/84 (72%)
Frame = -1 / +2
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CHPTEFDFYLCSHAGIQGTSRPAH HVLWDEN FTAD +Q L NNLCYTYARCTRSV
Sbjct: 332 CHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIV 511
Query: 451 XXXXXXXXXXXXXRFYMEPEMLDN 380
RFYMEPE D+
Sbjct: 512 PPAYYAHLAAFRARFYMEPETSDS 583
Score = 103 bits (219), Expect(2) = 6e-026
Identities = 53/83 (63%), Positives = 59/83 (71%)
Frame = +3 / -3
Query: 381 LSNISGSMXXXXXXXXKCA*YAGGTTQTERVHRA*V*QRLFGNGCISSAVKLFSSQRTWE 560
LS++SGS+ + A*YAGGT +T+RVH A V*QRL C SAV LFSSQRT
Sbjct: 582 LSDVSGSI*NRARNAARWA*YAGGTIETDRVHLAYV*QRLLVKDCNPSAVNLFSSQRT** 403
Query: 561 *AGLLVPWIPA*LQR*KSNSVGW 629
AGLLVP IPA LQR*KSNSVGW
Sbjct: 402 WAGLLVP*IPAWLQR*KSNSVGW 334
Score = 51.0 bits (105), Expect(2) = 2e-044
Identities = 19/30 (63%), Positives = 26/30 (86%)
Frame = -1 / +2
Query: 373 SKTSNGPSGVSVKPLPAVKEKVKRMMFYC* 284
S+++ P+G SV+PLPA+KE VKR+MFYC*
Sbjct: 638 SRSTRVPAGTSVRPLPALKENVKRVMFYC* 727
Score = 34.1 bits (68), Expect(2) = 6e-026
Identities = 15/23 (65%), Positives = 16/23 (69%)
Frame = +3 / -3
Query: 288 Q*NIILFTFSFTAGRGFTETPLG 356
Q*NI L TFSF AG+G T P G
Sbjct: 723 Q*NITLLTFSFKAGKGRTLVPAG 655
>gb|CO369002.1|CO369002 RTK1_44_F12.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_44_F12_A029 3', mRNA sequence
Length = 823
Score = 148 bits (317), Expect(2) = 2e-044
Identities = 59/84 (70%), Positives = 61/84 (72%)
Frame = -1 / +2
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CHPTEFDFYLCSHAGIQGTSRPAH HVLWDEN FTAD +Q L NNLCYTYARCTRSV
Sbjct: 143 CHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIV 322
Query: 451 XXXXXXXXXXXXXRFYMEPEMLDN 380
RFYMEPE D+
Sbjct: 323 PPAYYAHLAAFRARFYMEPETSDS 394
Score = 103 bits (219), Expect(2) = 6e-026
Identities = 53/83 (63%), Positives = 59/83 (71%)
Frame = +3 / -2
Query: 381 LSNISGSMXXXXXXXXKCA*YAGGTTQTERVHRA*V*QRLFGNGCISSAVKLFSSQRTWE 560
LS++SGS+ + A*YAGGT +T+RVH A V*QRL C SAV LFSSQRT
Sbjct: 393 LSDVSGSI*NRARNAARWA*YAGGTIETDRVHLAYV*QRLLVKDCNPSAVNLFSSQRT** 214
Query: 561 *AGLLVPWIPA*LQR*KSNSVGW 629
AGLLVP IPA LQR*KSNSVGW
Sbjct: 213 WAGLLVP*IPAWLQR*KSNSVGW 145
Score = 51.0 bits (105), Expect(2) = 2e-044
Identities = 19/30 (63%), Positives = 26/30 (86%)
Frame = -1 / +1
Query: 373 SKTSNGPSGVSVKPLPAVKEKVKRMMFYC* 284
S+++ P+G SV+PLPA+KE VKR+MFYC*
Sbjct: 448 SRSTRVPAGTSVRPLPALKENVKRVMFYC* 537
Score = 34.1 bits (68), Expect(2) = 6e-026
Identities = 15/23 (65%), Positives = 16/23 (69%)
Frame = +3 / -3
Query: 288 Q*NIILFTFSFTAGRGFTETPLG 356
Q*NI L TFSF AG+G T P G
Sbjct: 533 Q*NITLLTFSFKAGKGRTLVPAG 465
>gb|DR091162.1|DR091162 RTAL1_19_F09.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_19_F09_A029 5', mRNA sequence
Length = 796
Score = 148 bits (317), Expect(2) = 2e-044
Identities = 59/84 (70%), Positives = 61/84 (72%)
Frame = -1 / +3
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CHPTEFDFYLCSHAGIQGTSRPAH HVLWDEN FTAD +Q L NNLCYTYARCTRSV
Sbjct: 309 CHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIV 488
Query: 451 XXXXXXXXXXXXXRFYMEPEMLDN 380
RFYMEPE D+
Sbjct: 489 PPAYYAHLAAFRARFYMEPETSDS 560
Score = 103 bits (219), Expect(2) = 6e-026
Identities = 53/83 (63%), Positives = 59/83 (71%)
Frame = +3 / -1
Query: 381 LSNISGSMXXXXXXXXKCA*YAGGTTQTERVHRA*V*QRLFGNGCISSAVKLFSSQRTWE 560
LS++SGS+ + A*YAGGT +T+RVH A V*QRL C SAV LFSSQRT
Sbjct: 559 LSDVSGSI*NRARNAARWA*YAGGTIETDRVHLAYV*QRLLVKDCNPSAVNLFSSQRT** 380
Query: 561 *AGLLVPWIPA*LQR*KSNSVGW 629
AGLLVP IPA LQR*KSNSVGW
Sbjct: 379 WAGLLVP*IPAWLQR*KSNSVGW 311
Score = 51.0 bits (105), Expect(2) = 2e-044
Identities = 19/30 (63%), Positives = 26/30 (86%)
Frame = -1 / +3
Query: 373 SKTSNGPSGVSVKPLPAVKEKVKRMMFYC* 284
S+++ P+G SV+PLPA+KE VKR+MFYC*
Sbjct: 615 SRSTRVPAGTSVRPLPALKENVKRVMFYC* 704
Score = 34.1 bits (68), Expect(2) = 6e-026
Identities = 15/23 (65%), Positives = 16/23 (69%)
Frame = +3 / -1
Query: 288 Q*NIILFTFSFTAGRGFTETPLG 356
Q*NI L TFSF AG+G T P G
Sbjct: 700 Q*NITLLTFSFKAGKGRTLVPAG 632
>gb|DR017548.1|DR017548 STRS1_17_B02.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_17_B02_A034 3', mRNA sequence
Length = 759
Score = 148 bits (317), Expect(2) = 2e-044
Identities = 59/84 (70%), Positives = 61/84 (72%)
Frame = -1 / +3
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CHPTEFDFYLCSHAGIQGTSRPAH HVLWDEN FTAD +Q L NNLCYTYARCTRSV
Sbjct: 90 CHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIV 269
Query: 451 XXXXXXXXXXXXXRFYMEPEMLDN 380
RFYMEPE D+
Sbjct: 270 PPAYYAHLAAFRARFYMEPETSDS 341
Score = 103 bits (219), Expect(2) = 6e-026
Identities = 53/83 (63%), Positives = 59/83 (71%)
Frame = +3 / -3
Query: 381 LSNISGSMXXXXXXXXKCA*YAGGTTQTERVHRA*V*QRLFGNGCISSAVKLFSSQRTWE 560
LS++SGS+ + A*YAGGT +T+RVH A V*QRL C SAV LFSSQRT
Sbjct: 340 LSDVSGSI*NRARNAARWA*YAGGTIETDRVHLAYV*QRLLVKDCNPSAVNLFSSQRT** 161
Query: 561 *AGLLVPWIPA*LQR*KSNSVGW 629
AGLLVP IPA LQR*KSNSVGW
Sbjct: 160 WAGLLVP*IPAWLQR*KSNSVGW 92
Score = 51.0 bits (105), Expect(2) = 2e-044
Identities = 19/30 (63%), Positives = 26/30 (86%)
Frame = -1 / +3
Query: 373 SKTSNGPSGVSVKPLPAVKEKVKRMMFYC* 284
S+++ P+G SV+PLPA+KE VKR+MFYC*
Sbjct: 396 SRSTRVPAGTSVRPLPALKENVKRVMFYC* 485
Score = 34.1 bits (68), Expect(2) = 6e-026
Identities = 15/23 (65%), Positives = 16/23 (69%)
Frame = +3 / -3
Query: 288 Q*NIILFTFSFTAGRGFTETPLG 356
Q*NI L TFSF AG+G T P G
Sbjct: 481 Q*NITLLTFSFKAGKGRTLVPAG 413
>gb|DR091080.1|DR091080 RTAL1_19_F09.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_19_F09_A029 3', mRNA sequence
Length = 741
Score = 148 bits (317), Expect(2) = 2e-044
Identities = 59/84 (70%), Positives = 61/84 (72%)
Frame = -1 / +1
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CHPTEFDFYLCSHAGIQGTSRPAH HVLWDEN FTAD +Q L NNLCYTYARCTRSV
Sbjct: 67 CHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIV 246
Query: 451 XXXXXXXXXXXXXRFYMEPEMLDN 380
RFYMEPE D+
Sbjct: 247 PPAYYAHLAAFRARFYMEPETSDS 318
Score = 103 bits (219), Expect(2) = 6e-026
Identities = 53/83 (63%), Positives = 59/83 (71%)
Frame = +3 / -2
Query: 381 LSNISGSMXXXXXXXXKCA*YAGGTTQTERVHRA*V*QRLFGNGCISSAVKLFSSQRTWE 560
LS++SGS+ + A*YAGGT +T+RVH A V*QRL C SAV LFSSQRT
Sbjct: 317 LSDVSGSI*NRARNAARWA*YAGGTIETDRVHLAYV*QRLLVKDCNPSAVNLFSSQRT** 138
Query: 561 *AGLLVPWIPA*LQR*KSNSVGW 629
AGLLVP IPA LQR*KSNSVGW
Sbjct: 137 WAGLLVP*IPAWLQR*KSNSVGW 69
Score = 51.0 bits (105), Expect(2) = 2e-044
Identities = 19/30 (63%), Positives = 26/30 (86%)
Frame = -1 / +1
Query: 373 SKTSNGPSGVSVKPLPAVKEKVKRMMFYC* 284
S+++ P+G SV+PLPA+KE VKR+MFYC*
Sbjct: 373 SRSTRVPAGTSVRPLPALKENVKRVMFYC* 462
Score = 34.1 bits (68), Expect(2) = 6e-026
Identities = 15/23 (65%), Positives = 16/23 (69%)
Frame = +3 / -2
Query: 288 Q*NIILFTFSFTAGRGFTETPLG 356
Q*NI L TFSF AG+G T P G
Sbjct: 458 Q*NITLLTFSFKAGKGRTLVPAG 390
>gb|CF389519.1|CF389519 RTDR2_8_B11.b1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_8_B11_A021 3', mRNA
sequence
Length = 645
Score = 148 bits (317), Expect(2) = 2e-044
Identities = 59/84 (70%), Positives = 61/84 (72%)
Frame = -1 / +2
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CHPTEFDFYLCSHAGIQGTSRPAH HVLWDEN FTAD +Q L NNLCYTYARCTRSV
Sbjct: 59 CHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIV 238
Query: 451 XXXXXXXXXXXXXRFYMEPEMLDN 380
RFYMEPE D+
Sbjct: 239 PPAYYAHLAAFRARFYMEPETSDS 310
Score = 103 bits (219), Expect(2) = 6e-026
Identities = 53/83 (63%), Positives = 59/83 (71%)
Frame = +3 / -1
Query: 381 LSNISGSMXXXXXXXXKCA*YAGGTTQTERVHRA*V*QRLFGNGCISSAVKLFSSQRTWE 560
LS++SGS+ + A*YAGGT +T+RVH A V*QRL C SAV LFSSQRT
Sbjct: 309 LSDVSGSI*NRARNAARWA*YAGGTIETDRVHLAYV*QRLLVKDCNPSAVNLFSSQRT** 130
Query: 561 *AGLLVPWIPA*LQR*KSNSVGW 629
AGLLVP IPA LQR*KSNSVGW
Sbjct: 129 WAGLLVP*IPAWLQR*KSNSVGW 61
Score = 51.0 bits (105), Expect(2) = 2e-044
Identities = 19/30 (63%), Positives = 26/30 (86%)
Frame = -1 / +2
Query: 373 SKTSNGPSGVSVKPLPAVKEKVKRMMFYC* 284
S+++ P+G SV+PLPA+KE VKR+MFYC*
Sbjct: 365 SRSTRVPAGTSVRPLPALKENVKRVMFYC* 454
Score = 34.1 bits (68), Expect(2) = 6e-026
Identities = 15/23 (65%), Positives = 16/23 (69%)
Frame = +3 / -1
Query: 288 Q*NIILFTFSFTAGRGFTETPLG 356
Q*NI L TFSF AG+G T P G
Sbjct: 450 Q*NITLLTFSFKAGKGRTLVPAG 382
>gb|CO365327.1|CO365327 RTK1_25_B06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_25_B06_A029 3', mRNA sequence
Length = 755
Score = 146 bits (313), Expect(2) = 8e-044
Identities = 58/84 (69%), Positives = 60/84 (71%)
Frame = -1 / +3
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CHPTEFDFYLCSHAGIQGTSRPAH HVLWDEN FTAD +Q L NN CYTYARCTRSV
Sbjct: 81 CHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNFCYTYARCTRSVSIV 260
Query: 451 XXXXXXXXXXXXXRFYMEPEMLDN 380
RFYMEPE D+
Sbjct: 261 PPAYYAHLAAFRARFYMEPETSDS 332
Score = 101 bits (216), Expect(2) = 2e-025
Identities = 52/83 (62%), Positives = 59/83 (71%)
Frame = +3 / -2
Query: 381 LSNISGSMXXXXXXXXKCA*YAGGTTQTERVHRA*V*QRLFGNGCISSAVKLFSSQRTWE 560
LS++SGS+ + A*YAGGT +T+RVH A V*Q+L C SAV LFSSQRT
Sbjct: 331 LSDVSGSI*NRARNAARWA*YAGGTIETDRVHLAYV*QKLLVKDCNPSAVNLFSSQRT** 152
Query: 561 *AGLLVPWIPA*LQR*KSNSVGW 629
AGLLVP IPA LQR*KSNSVGW
Sbjct: 151 WAGLLVP*IPAWLQR*KSNSVGW 83
Score = 51.0 bits (105), Expect(2) = 8e-044
Identities = 19/30 (63%), Positives = 26/30 (86%)
Frame = -1 / +3
Query: 373 SKTSNGPSGVSVKPLPAVKEKVKRMMFYC* 284
S+++ P+G SV+PLPA+KE VKR+MFYC*
Sbjct: 387 SRSTRVPAGTSVRPLPALKENVKRVMFYC* 476
Score = 34.1 bits (68), Expect(2) = 2e-025
Identities = 15/23 (65%), Positives = 16/23 (69%)
Frame = +3 / -2
Query: 288 Q*NIILFTFSFTAGRGFTETPLG 356
Q*NI L TFSF AG+G T P G
Sbjct: 472 Q*NITLLTFSFKAGKGRTLVPAG 404
>gb|BG040229.1|BG040229 NXSI_110_A07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_110_A07 5' similar to Arabidopsis thaliana
sequence At1g48410 Argonaute protein AGO1 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 578
Score = 148 bits (317), Expect(2) = 2e-043
Identities = 59/84 (70%), Positives = 61/84 (72%)
Frame = -1 / +2
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CHPTEFDFYLCSHAGIQGTSRPAH HVLWDEN FTAD +Q L NNLCYTYARCTRSV
Sbjct: 110 CHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIV 289
Query: 451 XXXXXXXXXXXXXRFYMEPEMLDN 380
RFYMEPE D+
Sbjct: 290 PPAYYAHLAAFRARFYMEPETSDS 361
Score = 103 bits (219), Expect(2) = 1e-024
Identities = 53/83 (63%), Positives = 59/83 (71%)
Frame = +3 / -3
Query: 381 LSNISGSMXXXXXXXXKCA*YAGGTTQTERVHRA*V*QRLFGNGCISSAVKLFSSQRTWE 560
LS++SGS+ + A*YAGGT +T+RVH A V*QRL C SAV LFSSQRT
Sbjct: 360 LSDVSGSI*NRARNAARWA*YAGGTIETDRVHLAYV*QRLLVKDCNPSAVNLFSSQRT** 181
Query: 561 *AGLLVPWIPA*LQR*KSNSVGW 629
AGLLVP IPA LQR*KSNSVGW
Sbjct: 180 WAGLLVP*IPAWLQR*KSNSVGW 112
Score = 47.8 bits (98), Expect(2) = 2e-043
Identities = 18/30 (60%), Positives = 25/30 (83%)
Frame = -1 / +2
Query: 373 SKTSNGPSGVSVKPLPAVKEKVKRMMFYC* 284
S+++ P+ SV+PLPA+KE VKR+MFYC*
Sbjct: 416 SRSTRVPAXTSVRPLPALKENVKRVMFYC* 505
Score = 29.9 bits (59), Expect(2) = 1e-024
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = +3 / -3
Query: 288 Q*NIILFTFSFTAGRGFT 341
Q*NI L TFSF AG+G T
Sbjct: 501 Q*NITLLTFSFKAGKGRT 448
>gb|DR097217.1|DR097217 STRR1_33_G07.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_33_G07_A033 3', mRNA sequence
Length = 857
Score = 145 bits (312), Expect(2) = 2e-042
Identities = 57/84 (67%), Positives = 61/84 (72%)
Frame = -1 / +1
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CHPTEFDFYLCSHAGIQGTSRPAH HVLWD+N F+AD +Q L NNLCYTYARCTRSV
Sbjct: 187 CHPTEFDFYLCSHAGIQGTSRPAHYHVLWDDNRFSADALQSLTNNLCYTYARCTRSVSIV 366
Query: 451 XXXXXXXXXXXXXRFYMEPEMLDN 380
RFY+EPE DN
Sbjct: 367 PPAYYAHLAAFRARFYIEPETSDN 438
Score = 111 bits (237), Expect(2) = 8e-028
Identities = 56/82 (68%), Positives = 62/82 (75%)
Frame = +3 / -1
Query: 381 LSNISGSMXXXXXXXXKCA*YAGGTTQTERVHRA*V*QRLFGNGCISSAVKLFSSQRTWE 560
LS++SGSM +CA*YAGGT +TERVHRA V*QRLF C +SA+ L SS RT
Sbjct: 437 LSDVSGSM*KRARNAARCA*YAGGTIETERVHRAYV*QRLFVKDCKASALNLLSSHRT** 258
Query: 561 *AGLLVPWIPA*LQR*KSNSVG 626
*AGLLVP IPA*LQR*KSNSVG
Sbjct: 257 *AGLLVP*IPA*LQR*KSNSVG 192
Score = 46.9 bits (96), Expect(2) = 2e-042
Identities = 18/31 (58%), Positives = 22/31 (70%)
Frame = -1 / +1
Query: 376 TSKTSNGPSGVSVKPLPAVKEKVKRMMFYC* 284
T T G +V+PLPA+KE VKR+MFYC*
Sbjct: 493 TRSTRPGTGAAAVRPLPAIKENVKRVMFYC* 585
Score = 32.2 bits (64), Expect(2) = 8e-028
Identities = 17/30 (56%), Positives = 18/30 (60%)
Frame = +3 / -1
Query: 288 Q*NIILFTFSFTAGRGFTETPLGPLEVLDV 377
Q*NI LFTFS AG+G T P VL V
Sbjct: 581 Q*NITLFTFSLIAGKGRTAAAPVPGRVLRV 492
>gb|DR095290.1|DR095290 STRR1_20_C06.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_20_C06_A033 3', mRNA sequence
Length = 806
Score = 143 bits (307), Expect(2) = 9e-042
Identities = 56/84 (66%), Positives = 61/84 (72%)
Frame = -1 / +3
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CHPTEFDFYLCSHAGIQGTSRPAH HVLWD+N F+AD +Q L NNLCYTYARCTRSV
Sbjct: 228 CHPTEFDFYLCSHAGIQGTSRPAHYHVLWDDNRFSADALQSLTNNLCYTYARCTRSVSIV 407
Query: 451 XXXXXXXXXXXXXRFYMEPEMLDN 380
RFY+EPE D+
Sbjct: 408 PPAYYAHLAAFRARFYIEPETSDS 479
Score = 111 bits (237), Expect(2) = 8e-028
Identities = 56/82 (68%), Positives = 62/82 (75%)
Frame = +3 / -2
Query: 381 LSNISGSMXXXXXXXXKCA*YAGGTTQTERVHRA*V*QRLFGNGCISSAVKLFSSQRTWE 560
LS++SGSM +CA*YAGGT +TERVHRA V*QRLF C +SA+ L SS RT
Sbjct: 478 LSDVSGSM*KRARNAARCA*YAGGTIETERVHRAYV*QRLFVKDCKASALNLLSSHRT** 299
Query: 561 *AGLLVPWIPA*LQR*KSNSVG 626
*AGLLVP IPA*LQR*KSNSVG
Sbjct: 298 *AGLLVP*IPA*LQR*KSNSVG 233
Score = 46.9 bits (96), Expect(2) = 9e-042
Identities = 18/31 (58%), Positives = 22/31 (70%)
Frame = -1 / +3
Query: 376 TSKTSNGPSGVSVKPLPAVKEKVKRMMFYC* 284
T T G +V+PLPA+KE VKR+MFYC*
Sbjct: 534 TRSTRPGTGAAAVRPLPAIKENVKRVMFYC* 626
Score = 32.2 bits (64), Expect(2) = 8e-028
Identities = 17/30 (56%), Positives = 18/30 (60%)
Frame = +3 / -2
Query: 288 Q*NIILFTFSFTAGRGFTETPLGPLEVLDV 377
Q*NI LFTFS AG+G T P VL V
Sbjct: 622 Q*NITLFTFSLIAGKGRTAAAPVPGRVLRV 533
>gb|DR097306.1|DR097306 STRR1_33_G07.g3_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_33_G07_A033 5', mRNA sequence
Length = 840
Score = 140 bits (300), Expect(2) = 8e-041
Identities = 55/84 (65%), Positives = 58/84 (69%)
Frame = -1 / +2
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CHPTE DFYLCSHAGI GTS PAH HVLWD+N FTAD +Q L NNLCYTYARCTRSV
Sbjct: 371 CHPTELDFYLCSHAGIHGTSTPAHYHVLWDDNTFTADALQSLTNNLCYTYARCTRSVSIV 550
Query: 451 XXXXXXXXXXXXXRFYMEPEMLDN 380
RFY+EPE DN
Sbjct: 551 PPAYYAHLAAFRARFYLEPETSDN 622
Score = 107 bits (228), Expect(2) = 1e-026
Identities = 54/82 (65%), Positives = 61/82 (74%)
Frame = +3 / -1
Query: 381 LSNISGSMXXXXXXXXKCA*YAGGTTQTERVHRA*V*QRLFGNGCISSAVKLFSSQRTWE 560
LS++SGS +CA*YAGGT +TERVHRA V*QRLF C +SAV + SS RT
Sbjct: 621 LSDVSGSK*KRARNAARCA*YAGGTIETERVHRAYV*QRLFVKDCKASAVNVLSSHRT** 442
Query: 561 *AGLLVPWIPA*LQR*KSNSVG 626
*AG+LVP IPA*LQR*KSNSVG
Sbjct: 441 *AGVLVP*IPA*LQR*KSNSVG 376
Score = 46.9 bits (96), Expect(2) = 8e-041
Identities = 18/31 (58%), Positives = 22/31 (70%)
Frame = -1 / +2
Query: 376 TSKTSNGPSGVSVKPLPAVKEKVKRMMFYC* 284
T T G +V+PLPA+KE VKR+MFYC*
Sbjct: 677 TRSTRPGTGAAAVRPLPAIKENVKRVMFYC* 769
Score = 32.2 bits (64), Expect(2) = 1e-026
Identities = 17/30 (56%), Positives = 18/30 (60%)
Frame = +3 / -1
Query: 288 Q*NIILFTFSFTAGRGFTETPLGPLEVLDV 377
Q*NI LFTFS AG+G T P VL V
Sbjct: 765 Q*NITLFTFSLIAGKGRTAAAPVPGRVLRV 676
>gb|CO365529.1|CO365529 RTK1_17_C10.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_17_C10_A029 5', mRNA sequence
Length = 831
Score = 148 bits (317), Expect = 4e-035
Identities = 59/84 (70%), Positives = 61/84 (72%)
Frame = -1 / +2
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CHPTEFDFYLCSHAGIQGTSRPAH HVLWDEN FTAD +Q L NNLCYTYARCTRSV
Sbjct: 503 CHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIV 682
Query: 451 XXXXXXXXXXXXXRFYMEPEMLDN 380
RFYMEPE D+
Sbjct: 683 PPAYYAHLAAFRARFYMEPETSDS 754
Score = 103 bits (219), Expect = 1e-021
Identities = 53/83 (63%), Positives = 59/83 (71%)
Frame = +3 / -1
Query: 381 LSNISGSMXXXXXXXXKCA*YAGGTTQTERVHRA*V*QRLFGNGCISSAVKLFSSQRTWE 560
LS++SGS+ + A*YAGGT +T+RVH A V*QRL C SAV LFSSQRT
Sbjct: 753 LSDVSGSI*NRARNAARWA*YAGGTIETDRVHLAYV*QRLLVKDCNPSAVNLFSSQRT** 574
Query: 561 *AGLLVPWIPA*LQR*KSNSVGW 629
AGLLVP IPA LQR*KSNSVGW
Sbjct: 573 WAGLLVP*IPAWLQR*KSNSVGW 505
>gb|DR017625.1|DR017625 STRS1_17_B02.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_17_B02_A034 5', mRNA sequence
Length = 626
Score = 148 bits (317), Expect = 4e-035
Identities = 59/84 (70%), Positives = 61/84 (72%)
Frame = -1 / +2
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CHPTEFDFYLCSHAGIQGTSRPAH HVLWDEN FTAD +Q L NNLCYTYARCTRSV
Sbjct: 275 CHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIV 454
Query: 451 XXXXXXXXXXXXXRFYMEPEMLDN 380
RFYMEPE D+
Sbjct: 455 PPAYYAHLAAFRARFYMEPETSDS 526
Score = 103 bits (219), Expect = 1e-021
Identities = 53/83 (63%), Positives = 59/83 (71%)
Frame = +3 / -3
Query: 381 LSNISGSMXXXXXXXXKCA*YAGGTTQTERVHRA*V*QRLFGNGCISSAVKLFSSQRTWE 560
LS++SGS+ + A*YAGGT +T+RVH A V*QRL C SAV LFSSQRT
Sbjct: 525 LSDVSGSI*NRARNAARWA*YAGGTIETDRVHLAYV*QRLLVKDCNPSAVNLFSSQRT** 346
Query: 561 *AGLLVPWIPA*LQR*KSNSVGW 629
AGLLVP IPA LQR*KSNSVGW
Sbjct: 345 WAGLLVP*IPAWLQR*KSNSVGW 277
>gb|DR177283.1|DR177283 RTMNUT1_4_H01.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_4_H01_A029 3', mRNA sequence
Length = 637
Score = 103 bits (220), Expect(3) = 5e-033
Identities = 40/46 (86%), Positives = 41/46 (89%)
Frame = -1 / +3
Query: 598 SHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSV 461
SHAGIQGTSRPAH HVLWDEN FTAD +Q L NNLCYTYARCTRSV
Sbjct: 3 SHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSV 140
Score = 51.0 bits (105), Expect(3) = 5e-033
Identities = 19/30 (63%), Positives = 26/30 (86%)
Frame = -1 / +1
Query: 373 SKTSNGPSGVSVKPLPAVKEKVKRMMFYC* 284
S+++ P+G SV+PLPA+KE VKR+MFYC*
Sbjct: 277 SRSTRVPAGTSVRPLPALKENVKRVMFYC* 366
Score = 24.4 bits (47), Expect(3) = 5e-033
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = -2 / +2
Query: 429 WQHCGLGSTWNQR 391
W H GLG W+Q+
Sbjct: 173 WLHFGLGFIWSQK 211
>gb|AI725280.1|AI725280 1146 PtIFG2 Pinus taeda cDNA clone 9201r, mRNA sequence
Length = 580
Score = 141 bits (302), Expect = 5e-033
Identities = 56/80 (70%), Positives = 58/80 (72%)
Frame = -1 / +1
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CHPTEFDFYLCSHAGIQGTSRPAH HVLWDEN FTAD +Q L NNLCYTYARCTRSV
Sbjct: 148 CHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIV 327
Query: 451 XXXXXXXXXXXXXRFYMEPE 392
RF MEP+
Sbjct: 328 PPAYYAHLAAFRARFXMEPQ 387
>gb|CF670190.1|CF670190 RTCNT1_48_D08.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_48_D08_A029 5', mRNA sequence
Length = 797
Score = 138 bits (296), Expect = 3e-032
Identities = 55/77 (71%), Positives = 56/77 (72%)
Frame = -1 / +3
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXX 452
CHPTEFDFYLCSHAGIQGTSRPAH HVLWDEN FTAD +Q L NNLCYTYARCTRSV
Sbjct: 567 CHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIV 746
Query: 451 XXXXXXXXXXXXXRFYM 401
RFYM
Sbjct: 747 PPAYYAHLAAFRARFYM 797
>gb|BX679820.1|BX679820 BX679820 RS Pinus pinaster cDNA clone RS34D06, mRNA sequence
Length = 646
Score = 138 bits (295), Expect = 5e-032
Identities = 56/83 (67%), Positives = 58/83 (69%)
Frame = -1 / +3
Query: 628 HPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXXX 449
HPTE DF LCSHAGIQGTSRPAH HVLWDEN FTAD +Q L NNLCYTYARCTRSV
Sbjct: 360 HPTELDFNLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVT 539
Query: 448 XXXXXXXXXXXXRFYMEPEMLDN 380
RFYMEPE D+
Sbjct: 540 PAYYAHLAAFRARFYMEPETSDS 608
Score = 100 bits (214), Expect = 7e-021
Identities = 51/83 (61%), Positives = 57/83 (68%)
Frame = +3 / -1
Query: 381 LSNISGSMXXXXXXXXKCA*YAGGTTQTERVHRA*V*QRLFGNGCISSAVKLFSSQRTWE 560
LS++SGS+ + A*YAG T +T+RVH A V*QRL C SAV LFSSQ T
Sbjct: 607 LSDVSGSI*NRARNAARWA*YAGVTIETDRVHLAYV*QRLLVKDCNPSAVNLFSSQXT** 428
Query: 561 *AGLLVPWIPA*LQR*KSNSVGW 629
AGLLVPWIPA LQR KSNSVGW
Sbjct: 427 WAGLLVPWIPAWLQRLKSNSVGW 359
>gb|BG317563.1|BG317563 NXPV_003_C07_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_003_C07 5' similar to Arabidopsis
thaliana sequence At1g48410 Argonaute protein AGO1 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 332
Score = 134 bits (288), Expect = 4e-031
Identities = 55/80 (68%), Positives = 57/80 (71%)
Frame = -1 / +3
Query: 619 EFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXXXXXX 440
EFDFYLCSHAGIQGTSRPAH HVLWDEN FTAD +Q L NNLCYTYARCTRSV
Sbjct: 3 EFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAY 182
Query: 439 XXXXXXXXXRFYMEPEMLDN 380
RFYMEPE D+
Sbjct: 183 YAHLAAFRARFYMEPETSDS 242
>gb|CX713279.1|CX713279 RTPQ1_8_D01.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_8_D01_A032 3', mRNA sequence
Length = 821
Score = 120 bits (257), Expect(2) = 8e-031
Identities = 47/88 (53%), Positives = 57/88 (64%)
Frame = -1 / -3
Query: 628 HPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXXX 449
HP EFDFYLCSH+GI+GTSRP H HVLWDENNF +DE+Q L NNLCYT+ RCT+ V
Sbjct: 393 HPREFDFYLCSHSGIKGTSRPTHYHVLWDENNFLSDELQQLINNLCYTFVRCTKPVSLVP 214
Query: 448 XXXXXXXXXXXXRFYMEPEMLDNQTSKT 365
R Y+E ++TS +
Sbjct: 213 LAYYAHLAAYRARLYLEKSGSISETSSS 130
Score = 33.1 bits (66), Expect(2) = 8e-031
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -1 / -3
Query: 346 VSVKPLPAVKEKVKRMMFYC*Q 281
V PLP + E VK++MFYC*+
Sbjct: 66 VEPPPLPKLNENVKKLMFYC*K 1
>gb|CX713355.1|CX713355 RTPQ1_8_D01.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_8_D01_A032 5', mRNA sequence
Length = 793
Score = 120 bits (257), Expect(2) = 8e-031
Identities = 47/88 (53%), Positives = 57/88 (64%)
Frame = -1 / -3
Query: 628 HPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXXX 449
HP EFDFYLCSH+GI+GTSRP H HVLWDENNF +DE+Q L NNLCYT+ RCT+ V
Sbjct: 524 HPREFDFYLCSHSGIKGTSRPTHYHVLWDENNFLSDELQQLINNLCYTFVRCTKPVSLVP 345
Query: 448 XXXXXXXXXXXXRFYMEPEMLDNQTSKT 365
R Y+E ++TS +
Sbjct: 344 LAYYAHLAAYRARLYLEKSGSISETSSS 261
Score = 33.1 bits (66), Expect(2) = 8e-031
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -1 / -3
Query: 346 VSVKPLPAVKEKVKRMMFYC*Q 281
V PLP + E VK++MFYC*+
Sbjct: 197 VEPPPLPKLNENVKKLMFYC*K 132
>gb|DR053121.1|DR053121 RTCA1_9_D06.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_9_D06_A029 3', mRNA sequence
Length = 621
Score = 88.6 bits (187), Expect(2) = 1e-026
Identities = 37/62 (59%), Positives = 39/62 (62%)
Frame = -1 / +1
Query: 565 AHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSVCXXXXXXXXXXXXXXXRFYMEPEML 386
AH HVLWDEN FTAD +Q L NNLCYTYARCTRSV RFYMEPE
Sbjct: 1 AHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETS 180
Query: 385 DN 380
D+
Sbjct: 181 DS 186
Score = 51.0 bits (105), Expect(2) = 1e-026
Identities = 19/30 (63%), Positives = 26/30 (86%)
Frame = -1 / +1
Query: 373 SKTSNGPSGVSVKPLPAVKEKVKRMMFYC* 284
S+++ P+G SV+PLPA+KE VKR+MFYC*
Sbjct: 241 SRSTRVPAGTSVRPLPALKENVKRVMFYC* 330
>gb|DR059299.1|DR059299 RTNIT1_16_H03.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_16_H03_A029 5', mRNA sequence
Length = 685
Score = 106 bits (226), Expect(2) = 2e-025
Identities = 40/57 (70%), Positives = 48/57 (84%)
Frame = -1 / -3
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSV 461
C P FDFYLCSHAGI+GTS+PAH +VL DEN FT +++Q L N+LC+TYARCTRSV
Sbjct: 560 CQPKIFDFYLCSHAGIKGTSKPAHYNVLQDENGFTPNDIQRLTNDLCFTYARCTRSV 390
Score = 30.9 bits (61), Expect(2) = 2e-025
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1 / -3
Query: 352 SGVSVKPLPAVKEKVKRMMFYC*QG 278
SG +KPLP V ++K MF+ * G
Sbjct: 245 SGTFMKPLPPVHGRIKNSMFFI*SG 171
>gb|CO165691.1|CO165691 FLD1_56_G11.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_56_G11_A029 3', mRNA sequence
Length = 818
Score = 106 bits (226), Expect(2) = 3e-025
Identities = 40/57 (70%), Positives = 48/57 (84%)
Frame = -1 / +1
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSV 461
C P FDFYLCSHAGI+GTS+PAH +VL DEN FT +++Q L N+LC+TYARCTRSV
Sbjct: 154 CQPKIFDFYLCSHAGIKGTSKPAHYNVLQDENGFTPNDIQRLTNDLCFTYARCTRSV 324
Score = 30.4 bits (60), Expect(2) = 3e-025
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1 / +1
Query: 352 SGVSVKPLPAVKEKVKRMMFYC*QG 278
SG KPLP V ++K MF+ * G
Sbjct: 469 SGTFTKPLPPVHGRIKNSMFFI*SG 543
>gb|CF393001.1|CF393001 RTDR3_18_E12.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_18_E12_A022 5', mRNA
sequence
Length = 748
Score = 111 bits (237), Expect = 5e-024
Identities = 41/47 (87%), Positives = 42/47 (89%)
Frame = -1 / +3
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLC 491
CHPTEFDFYLCSHAGIQGTSRPAH HVLWDEN FTAD +Q L NNLC
Sbjct: 606 CHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLC 746
>gb|CO368589.1|CO368589 RTK1_41_C07.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_41_C07_A029 5', mRNA sequence
Length = 741
Score = 109 bits (232), Expect = 2e-023
Identities = 37/56 (66%), Positives = 47/56 (83%)
Frame = -1 / +2
Query: 628 HPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSV 461
HP +FDFYLCSH G+ GTS+P H HVLWD+N F++DE++ L NNLCYT+ARCT+ V
Sbjct: 125 HPRQFDFYLCSHNGLLGTSKPTHYHVLWDDNRFSSDELETLINNLCYTFARCTKPV 292
>gb|CX651686.1|CX651686 COLD1_54_D03.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_54_D03_A029 3', mRNA sequence
Length = 686
Score = 109 bits (232), Expect = 2e-023
Identities = 37/56 (66%), Positives = 47/56 (83%)
Frame = -1 / -3
Query: 628 HPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSV 461
HP +FDFYLCSH G+ GTS+P H HVLWD+N F++DE++ L NNLCYT+ARCT+ V
Sbjct: 426 HPRQFDFYLCSHNGLLGTSKPTHYHVLWDDNRFSSDELETLINNLCYTFARCTKPV 259
>gb|CX651761.1|CX651761 COLD1_54_D03.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_54_D03_A029 5', mRNA sequence
Length = 722
Score = 109 bits (232), Expect = 2e-023
Identities = 37/56 (66%), Positives = 47/56 (83%)
Frame = -1 / -2
Query: 628 HPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSV 461
HP +FDFYLCSH G+ GTS+P H HVLWD+N F++DE++ L NNLCYT+ARCT+ V
Sbjct: 679 HPRQFDFYLCSHNGLLGTSKPTHYHVLWDDNRFSSDELETLINNLCYTFARCTKPV 512
>gb|DR019332.1|DR019332 STRS1_29_F12.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_29_F12_A034 3', mRNA sequence
Length = 746
Score = 109 bits (232), Expect = 2e-023
Identities = 37/56 (66%), Positives = 47/56 (83%)
Frame = -1 / +1
Query: 628 HPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSV 461
HP +FDFYLCSH G+ GTS+P H HVLWD+N F++DE++ L NNLCYT+ARCT+ V
Sbjct: 73 HPRQFDFYLCSHNGLLGTSKPTHYHVLWDDNRFSSDELETLINNLCYTFARCTKPV 240
>gb|DR694441.1|DR694441 EST1084533 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEC49 3' end, mRNA sequence
Length = 824
Score = 109 bits (232), Expect = 2e-023
Identities = 37/56 (66%), Positives = 47/56 (83%)
Frame = -1 / +2
Query: 628 HPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSV 461
HP +FDFYLCSH G+ GTS+P H HVLWD+N F++DE++ L NNLCYT+ARCT+ V
Sbjct: 620 HPRQFDFYLCSHNGLLGTSKPTHYHVLWDDNRFSSDELETLINNLCYTFARCTKPV 787
>gb|CO364433.1|CO364433 RTK1_15_E04.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_15_E04_A029 5', mRNA sequence
Length = 643
Score = 97.3 bits (206), Expect(2) = 7e-023
Identities = 36/57 (63%), Positives = 44/57 (77%)
Frame = -1 / -1
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSV 461
C P FDFY CSHAGI+GTS+PAH +V DEN F +++Q L N+LC+TYARCTR V
Sbjct: 562 CQPKIFDFYFCSHAGIKGTSKPAHYNVFQDENGFPPNDIQRLTNDLCFTYARCTRFV 392
Score = 31.3 bits (62), Expect(2) = 7e-023
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1 / -1
Query: 352 SGVSVKPLPAVKEKVKRMMFYC*QG 278
SG +KPLP V ++K MF+ * G
Sbjct: 247 SGTFMKPLPPVHGRIKNFMFFI*SG 173
>gb|CO369078.1|CO369078 RTK1_44_F12.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_44_F12_A029 5', mRNA sequence
Length = 779
Score = 107 bits (228), Expect = 8e-023
Identities = 40/46 (86%), Positives = 41/46 (89%)
Frame = -1 / +1
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNL 494
CHPTEFDFYLCSHAGIQGTSRPAH HVLWDEN FTAD +Q L NNL
Sbjct: 640 CHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNL 777
>gb|BX681875.1|BX681875 BX681875 RS Pinus pinaster cDNA clone RS66B04, mRNA sequence
Length = 557
Score = 106 bits (226), Expect = 2e-022
Identities = 40/57 (70%), Positives = 48/57 (84%)
Frame = -1 / +1
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSV 461
C P FDFYLCSHAGI+GTS+PAH +VL DEN FT +++Q L N+LC+TYARCTRSV
Sbjct: 208 CQPKIFDFYLCSHAGIKGTSKPAHYNVLQDENGFTPNDIQRLTNDLCFTYARCTRSV 378
>gb|CO165762.1|CO165762 FLD1_56_G11.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_56_G11_A029 5', mRNA sequence
Length = 844
Score = 106 bits (226), Expect = 2e-022
Identities = 40/57 (70%), Positives = 48/57 (84%)
Frame = -1 / +2
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSV 461
C P FDFYLCSHAGI+GTS+PAH +VL DEN FT +++Q L N+LC+TYARCTRSV
Sbjct: 437 CQPKIFDFYLCSHAGIKGTSKPAHYNVLQDENGFTPNDIQRLTNDLCFTYARCTRSV 607
>gb|DR020687.1|DR020687 STRS1_38_D07.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_38_D07_A034 5', mRNA sequence
Length = 533
Score = 106 bits (226), Expect = 2e-022
Identities = 40/57 (70%), Positives = 48/57 (84%)
Frame = -1 / +3
Query: 631 CHPTEFDFYLCSHAGIQGTSRPAHSHVLWDENNFTADEMQPLPNNLCYTYARCTRSV 461
C P FDFYLCSHAGI+GTS+PAH +VL DEN FT +++Q L N+LC+TYARCTRSV
Sbjct: 237 CQPKIFDFYLCSHAGIKGTSKPAHYNVLQDENGFTPNDIQRLTNDLCFTYARCTRSV 407
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 318,225,296
Number of Sequences: 355925
Number of extensions: 4287403
Number of successful extensions: 40411
Number of sequences better than 1.0e-020: 44
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 8575224060
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)