TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3023585.2.1
(635 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR097217.1|DR097217 STRR1_33_G07.b1_A033 Stem Response R... 187 1e-055
gb|DR166003.1|DR166003 RTPHOS1_8_E04.g1_A029 Roots minus ph... 190 4e-055
gb|CO363849.1|CO363849 RTK1_12_E06.b1_A029 Roots minus pota... 190 4e-055
gb|CO365443.1|CO365443 RTK1_17_C10.b1_A029 Roots minus pota... 190 4e-055
gb|CO365399.1|CO365399 RTK1_25_B06.g1_A029 Roots minus pota... 190 4e-055
gb|CO369002.1|CO369002 RTK1_44_F12.b1_A029 Roots minus pota... 190 4e-055
gb|DR091162.1|DR091162 RTAL1_19_F09.g1_A029 Roots plus adde... 190 4e-055
gb|DR017548.1|DR017548 STRS1_17_B02.b1_A034 Shoot tip pitch... 190 4e-055
gb|DR091080.1|DR091080 RTAL1_19_F09.b1_A029 Roots plus adde... 190 4e-055
gb|CF389519.1|CF389519 RTDR2_8_B11.b1_A021 Loblolly pine ro... 190 4e-055
gb|DR095290.1|DR095290 STRR1_20_C06.b1_A033 Stem Response R... 185 5e-055
gb|CO365327.1|CO365327 RTK1_25_B06.b1_A029 Roots minus pota... 188 1e-054
gb|BG040229.1|BG040229 NXSI_110_A07_F NXSI (Nsf Xylem Side ... 190 3e-054
gb|DR097306.1|DR097306 STRR1_33_G07.g3_A033 Stem Response R... 182 4e-054
gb|BG317563.1|BG317563 NXPV_003_C07_F NXPV (Nsf Xylem Plani... 190 9e-048
gb|CO365529.1|CO365529 RTK1_17_C10.g1_A029 Roots minus pota... 190 9e-048
gb|DR017625.1|DR017625 STRS1_17_B02.g1_A034 Shoot tip pitch... 190 9e-048
gb|DR177283.1|DR177283 RTMNUT1_4_H01.b1_A029 Roots minus mi... 124 2e-045
gb|AI725280.1|AI725280 1146 PtIFG2 Pinus taeda cDNA clone 9... 182 3e-045
gb|BX679820.1|BX679820 BX679820 RS Pinus pinaster cDNA clon... 179 1e-044
gb|CF670190.1|CF670190 RTCNT1_48_D08.g1_A029 Root control P... 179 2e-044
gb|CX713279.1|CX713279 RTPQ1_8_D01.b1_A032 Roots treated wi... 162 4e-043
gb|CX713355.1|CX713355 RTPQ1_8_D01.g1_A032 Roots treated wi... 162 4e-043
gb|DR053121.1|DR053121 RTCA1_9_D06.b1_A029 Roots minus calc... 144 2e-041
gb|CO165691.1|CO165691 FLD1_56_G11.b1_A029 Root flooded Pin... 144 8e-034
gb|CO165762.1|CO165762 FLD1_56_G11.g1_A029 Root flooded Pin... 144 8e-034
gb|DR020687.1|DR020687 STRS1_38_D07.g1_A034 Shoot tip pitch... 144 8e-034
gb|DR059299.1|DR059299 RTNIT1_16_H03.g1_A029 Roots minus ni... 144 8e-034
gb|CO368589.1|CO368589 RTK1_41_C07.g1_A029 Roots minus pota... 143 1e-033
gb|CX651686.1|CX651686 COLD1_54_D03.b1_A029 Root cold Pinus... 143 1e-033
gb|CX651761.1|CX651761 COLD1_54_D03.g1_A029 Root cold Pinus... 143 1e-033
gb|BX681875.1|BX681875 BX681875 RS Pinus pinaster cDNA clon... 142 2e-033
gb|CO364433.1|CO364433 RTK1_15_E04.g1_A029 Roots minus pota... 132 4e-033
gb|BQ633982.1|BQ633982 NXRV063_D02_F NXRV (Nsf Xylem Root w... 137 9e-032
gb|DR019332.1|DR019332 STRS1_29_F12.b1_A034 Shoot tip pitch... 119 1e-030
gb|DR694441.1|DR694441 EST1084533 Normalized pine embryo li... 130 8e-030
gb|CO157755.1|CO157755 FLD1_1_H02.g1_A029 Root flooded Pinu... 103 6e-025
gb|DR050119.1|DR050119 RTBOR1_21_H11.b1_A029 Roots plus add... 103 3e-024
gb|DR050199.1|DR050199 RTBOR1_21_H11.g1_A029 Roots plus add... 103 4e-024
gb|CF393001.1|CF393001 RTDR3_18_E12.g1_A022 Loblolly pine r... 105 2e-022
gb|CO157756.1|CO157756 FLD1_1_H03.g1_A029 Root flooded Pinu... 103 1e-021
gb|BF518099.1|BF518099 NXSI_035_A04_F NXSI (Nsf Xylem Side ... 101 4e-021
gb|CO369078.1|CO369078 RTK1_44_F12.g1_A029 Roots minus pota... 101 4e-021
gb|CF479079.1|CF479079 RTWW3_21_F03.g1_A022 Well-watered lo... 100 7e-021
>gb|DR097217.1|DR097217 STRR1_33_G07.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_33_G07_A033 3', mRNA sequence
Length = 857
Score = 187 bits (403), Expect(2) = 1e-055
Identities = 70/80 (87%), Positives = 77/80 (96%)
Frame = +1 / +1
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDFYLCSHAGIQGTSRPAHYHVLWD+N F+AD +Q+LTNNLCYTYARCTRSVS+VPPAY
Sbjct: 199 EFDFYLCSHAGIQGTSRPAHYHVLWDDNRFSADALQSLTNNLCYTYARCTRSVSIVPPAY 378
Query: 181 YAHLAAFRARFYMEPEMSEN 240
YAHLAAFRARFY+EPE S+N
Sbjct: 379 YAHLAAFRARFYIEPETSDN 438
Score = 110 bits (234), Expect(2) = 4e-028
Identities = 57/78 (73%), Positives = 60/78 (76%)
Frame = -1 / -1
Query: 236 SDISGSMXXXXXXXXRCA*YAGGTTETERVHRA*V*QRLFVSVCISSAVKLFSSQRTW** 57
SD+SGSM RCA*YAGGT ETERVHRA V*QRLFV C +SA+ L SS RT **
Sbjct: 434 SDVSGSM*KRARNAARCA*YAGGTIETERVHRAYV*QRLFVKDCKASALNLLSSHRT*** 255
Query: 56 AGLLVPWIPA*LQR*KSN 3
AGLLVP IPA*LQR*KSN
Sbjct: 254 AGLLVP*IPA*LQR*KSN 201
Score = 49.6 bits (102), Expect(2) = 1e-055
Identities = 20/35 (57%), Positives = 24/35 (68%)
Frame = +1 / +1
Query: 232 SENQTSKSSNGTNGGLVKPLPAVKEKVKRVMFYC* 336
S + T + GT V+PLPA+KE VKRVMFYC*
Sbjct: 481 SSSGTRSTRPGTGAAAVRPLPAIKENVKRVMFYC* 585
Score = 34.5 bits (69), Expect(2) = 4e-028
Identities = 16/24 (66%), Positives = 17/24 (70%)
Frame = -1 / -1
Query: 332 Q*NITLFTFSFTAGRGFTKPPFVP 261
Q*NITLFTFS AG+G T VP
Sbjct: 581 Q*NITLFTFSLIAGKGRTAAAPVP 510
>gb|DR166003.1|DR166003 RTPHOS1_8_E04.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_8_E04_A029 5', mRNA sequence
Length = 924
Score = 190 bits (409), Expect(2) = 4e-055
Identities = 73/85 (85%), Positives = 79/85 (92%)
Frame = +1 / +3
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDFYLCSHAGIQGTSRPAHYHVLWDEN FTAD +Q+LTNNLCYTYARCTRSVS+VPPAY
Sbjct: 477 EFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAY 656
Query: 181 YAHLAAFRARFYMEPEMSENQTSKS 255
YAHLAAFRARFYMEPE S++ + S
Sbjct: 657 YAHLAAFRARFYMEPETSDSGSLSS 731
Score = 96.8 bits (205), Expect(2) = 5e-024
Identities = 53/78 (67%), Positives = 56/78 (71%)
Frame = -1 / -3
Query: 236 SDISGSMXXXXXXXXRCA*YAGGTTETERVHRA*V*QRLFVSVCISSAVKLFSSQRTW** 57
SD+SGS+ R A*YAGGT ET+RVH A V*QRL V C SAV LFSSQRT *
Sbjct: 712 SDVSGSI*NRARNAARWA*YAGGTIETDRVHLAYV*QRLLVKDCNPSAVNLFSSQRT**W 533
Query: 56 AGLLVPWIPA*LQR*KSN 3
AGLLVP IPA LQR*KSN
Sbjct: 532 AGLLVP*IPAWLQR*KSN 479
Score = 45.1 bits (92), Expect(2) = 4e-055
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +1 / +3
Query: 247 SKSSNGTNGGLVKPLPAVKEKVKRVMFYC* 336
S+S+ G V+PLPA+KE VKRVMFYC*
Sbjct: 771 SRSTRVPAGTSVRPLPALKENVKRVMFYC* 860
Score = 34.1 bits (68), Expect(2) = 5e-024
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = -1 / -3
Query: 332 Q*NITLFTFSFTAGRGFTKPP 270
Q*NITL TFSF AG+G T P
Sbjct: 856 Q*NITLLTFSFKAGKGRTLVP 794
>gb|CO363849.1|CO363849 RTK1_12_E06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_12_E06_A029 3', mRNA sequence
Length = 900
Score = 190 bits (409), Expect(2) = 4e-055
Identities = 73/85 (85%), Positives = 79/85 (92%)
Frame = +1 / +3
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDFYLCSHAGIQGTSRPAHYHVLWDEN FTAD +Q+LTNNLCYTYARCTRSVS+VPPAY
Sbjct: 243 EFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAY 422
Query: 181 YAHLAAFRARFYMEPEMSENQTSKS 255
YAHLAAFRARFYMEPE S++ + S
Sbjct: 423 YAHLAAFRARFYMEPETSDSGSLSS 497
Score = 96.8 bits (205), Expect(2) = 5e-024
Identities = 53/78 (67%), Positives = 56/78 (71%)
Frame = -1 / -3
Query: 236 SDISGSMXXXXXXXXRCA*YAGGTTETERVHRA*V*QRLFVSVCISSAVKLFSSQRTW** 57
SD+SGS+ R A*YAGGT ET+RVH A V*QRL V C SAV LFSSQRT *
Sbjct: 478 SDVSGSI*NRARNAARWA*YAGGTIETDRVHLAYV*QRLLVKDCNPSAVNLFSSQRT**W 299
Query: 56 AGLLVPWIPA*LQR*KSN 3
AGLLVP IPA LQR*KSN
Sbjct: 298 AGLLVP*IPAWLQR*KSN 245
Score = 45.1 bits (92), Expect(2) = 4e-055
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +1 / +3
Query: 247 SKSSNGTNGGLVKPLPAVKEKVKRVMFYC* 336
S+S+ G V+PLPA+KE VKRVMFYC*
Sbjct: 537 SRSTRVPAGTSVRPLPALKENVKRVMFYC* 626
Score = 34.1 bits (68), Expect(2) = 5e-024
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = -1 / -3
Query: 332 Q*NITLFTFSFTAGRGFTKPP 270
Q*NITL TFSF AG+G T P
Sbjct: 622 Q*NITLLTFSFKAGKGRTLVP 560
>gb|CO365443.1|CO365443 RTK1_17_C10.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_17_C10_A029 3', mRNA sequence
Length = 871
Score = 190 bits (409), Expect(2) = 4e-055
Identities = 73/85 (85%), Positives = 79/85 (92%)
Frame = +1 / +3
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDFYLCSHAGIQGTSRPAHYHVLWDEN FTAD +Q+LTNNLCYTYARCTRSVS+VPPAY
Sbjct: 198 EFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAY 377
Query: 181 YAHLAAFRARFYMEPEMSENQTSKS 255
YAHLAAFRARFYMEPE S++ + S
Sbjct: 378 YAHLAAFRARFYMEPETSDSGSLSS 452
Score = 96.8 bits (205), Expect(2) = 5e-024
Identities = 53/78 (67%), Positives = 56/78 (71%)
Frame = -1 / -1
Query: 236 SDISGSMXXXXXXXXRCA*YAGGTTETERVHRA*V*QRLFVSVCISSAVKLFSSQRTW** 57
SD+SGS+ R A*YAGGT ET+RVH A V*QRL V C SAV LFSSQRT *
Sbjct: 433 SDVSGSI*NRARNAARWA*YAGGTIETDRVHLAYV*QRLLVKDCNPSAVNLFSSQRT**W 254
Query: 56 AGLLVPWIPA*LQR*KSN 3
AGLLVP IPA LQR*KSN
Sbjct: 253 AGLLVP*IPAWLQR*KSN 200
Score = 45.1 bits (92), Expect(2) = 4e-055
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +1 / +3
Query: 247 SKSSNGTNGGLVKPLPAVKEKVKRVMFYC* 336
S+S+ G V+PLPA+KE VKRVMFYC*
Sbjct: 492 SRSTRVPAGTSVRPLPALKENVKRVMFYC* 581
Score = 34.1 bits (68), Expect(2) = 5e-024
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = -1 / -1
Query: 332 Q*NITLFTFSFTAGRGFTKPP 270
Q*NITL TFSF AG+G T P
Sbjct: 577 Q*NITLLTFSFKAGKGRTLVP 515
>gb|CO365399.1|CO365399 RTK1_25_B06.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_25_B06_A029 5', mRNA sequence
Length = 845
Score = 190 bits (409), Expect(2) = 4e-055
Identities = 73/85 (85%), Positives = 79/85 (92%)
Frame = +1 / +2
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDFYLCSHAGIQGTSRPAHYHVLWDEN FTAD +Q+LTNNLCYTYARCTRSVS+VPPAY
Sbjct: 344 EFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAY 523
Query: 181 YAHLAAFRARFYMEPEMSENQTSKS 255
YAHLAAFRARFYMEPE S++ + S
Sbjct: 524 YAHLAAFRARFYMEPETSDSGSLSS 598
Score = 96.8 bits (205), Expect(2) = 5e-024
Identities = 53/78 (67%), Positives = 56/78 (71%)
Frame = -1 / -3
Query: 236 SDISGSMXXXXXXXXRCA*YAGGTTETERVHRA*V*QRLFVSVCISSAVKLFSSQRTW** 57
SD+SGS+ R A*YAGGT ET+RVH A V*QRL V C SAV LFSSQRT *
Sbjct: 579 SDVSGSI*NRARNAARWA*YAGGTIETDRVHLAYV*QRLLVKDCNPSAVNLFSSQRT**W 400
Query: 56 AGLLVPWIPA*LQR*KSN 3
AGLLVP IPA LQR*KSN
Sbjct: 399 AGLLVP*IPAWLQR*KSN 346
Score = 45.1 bits (92), Expect(2) = 4e-055
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +1 / +2
Query: 247 SKSSNGTNGGLVKPLPAVKEKVKRVMFYC* 336
S+S+ G V+PLPA+KE VKRVMFYC*
Sbjct: 638 SRSTRVPAGTSVRPLPALKENVKRVMFYC* 727
Score = 34.1 bits (68), Expect(2) = 5e-024
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = -1 / -3
Query: 332 Q*NITLFTFSFTAGRGFTKPP 270
Q*NITL TFSF AG+G T P
Sbjct: 723 Q*NITLLTFSFKAGKGRTLVP 661
>gb|CO369002.1|CO369002 RTK1_44_F12.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_44_F12_A029 3', mRNA sequence
Length = 823
Score = 190 bits (409), Expect(2) = 4e-055
Identities = 73/85 (85%), Positives = 79/85 (92%)
Frame = +1 / +2
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDFYLCSHAGIQGTSRPAHYHVLWDEN FTAD +Q+LTNNLCYTYARCTRSVS+VPPAY
Sbjct: 155 EFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAY 334
Query: 181 YAHLAAFRARFYMEPEMSENQTSKS 255
YAHLAAFRARFYMEPE S++ + S
Sbjct: 335 YAHLAAFRARFYMEPETSDSGSLSS 409
Score = 96.8 bits (205), Expect(2) = 5e-024
Identities = 53/78 (67%), Positives = 56/78 (71%)
Frame = -1 / -2
Query: 236 SDISGSMXXXXXXXXRCA*YAGGTTETERVHRA*V*QRLFVSVCISSAVKLFSSQRTW** 57
SD+SGS+ R A*YAGGT ET+RVH A V*QRL V C SAV LFSSQRT *
Sbjct: 390 SDVSGSI*NRARNAARWA*YAGGTIETDRVHLAYV*QRLLVKDCNPSAVNLFSSQRT**W 211
Query: 56 AGLLVPWIPA*LQR*KSN 3
AGLLVP IPA LQR*KSN
Sbjct: 210 AGLLVP*IPAWLQR*KSN 157
Score = 45.1 bits (92), Expect(2) = 4e-055
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +1 / +1
Query: 247 SKSSNGTNGGLVKPLPAVKEKVKRVMFYC* 336
S+S+ G V+PLPA+KE VKRVMFYC*
Sbjct: 448 SRSTRVPAGTSVRPLPALKENVKRVMFYC* 537
Score = 34.1 bits (68), Expect(2) = 5e-024
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = -1 / -3
Query: 332 Q*NITLFTFSFTAGRGFTKPP 270
Q*NITL TFSF AG+G T P
Sbjct: 533 Q*NITLLTFSFKAGKGRTLVP 471
>gb|DR091162.1|DR091162 RTAL1_19_F09.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_19_F09_A029 5', mRNA sequence
Length = 796
Score = 190 bits (409), Expect(2) = 4e-055
Identities = 73/85 (85%), Positives = 79/85 (92%)
Frame = +1 / +3
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDFYLCSHAGIQGTSRPAHYHVLWDEN FTAD +Q+LTNNLCYTYARCTRSVS+VPPAY
Sbjct: 321 EFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAY 500
Query: 181 YAHLAAFRARFYMEPEMSENQTSKS 255
YAHLAAFRARFYMEPE S++ + S
Sbjct: 501 YAHLAAFRARFYMEPETSDSGSLSS 575
Score = 96.8 bits (205), Expect(2) = 5e-024
Identities = 53/78 (67%), Positives = 56/78 (71%)
Frame = -1 / -1
Query: 236 SDISGSMXXXXXXXXRCA*YAGGTTETERVHRA*V*QRLFVSVCISSAVKLFSSQRTW** 57
SD+SGS+ R A*YAGGT ET+RVH A V*QRL V C SAV LFSSQRT *
Sbjct: 556 SDVSGSI*NRARNAARWA*YAGGTIETDRVHLAYV*QRLLVKDCNPSAVNLFSSQRT**W 377
Query: 56 AGLLVPWIPA*LQR*KSN 3
AGLLVP IPA LQR*KSN
Sbjct: 376 AGLLVP*IPAWLQR*KSN 323
Score = 45.1 bits (92), Expect(2) = 4e-055
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +1 / +3
Query: 247 SKSSNGTNGGLVKPLPAVKEKVKRVMFYC* 336
S+S+ G V+PLPA+KE VKRVMFYC*
Sbjct: 615 SRSTRVPAGTSVRPLPALKENVKRVMFYC* 704
Score = 34.1 bits (68), Expect(2) = 5e-024
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = -1 / -1
Query: 332 Q*NITLFTFSFTAGRGFTKPP 270
Q*NITL TFSF AG+G T P
Sbjct: 700 Q*NITLLTFSFKAGKGRTLVP 638
>gb|DR017548.1|DR017548 STRS1_17_B02.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_17_B02_A034 3', mRNA sequence
Length = 759
Score = 190 bits (409), Expect(2) = 4e-055
Identities = 73/85 (85%), Positives = 79/85 (92%)
Frame = +1 / +3
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDFYLCSHAGIQGTSRPAHYHVLWDEN FTAD +Q+LTNNLCYTYARCTRSVS+VPPAY
Sbjct: 102 EFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAY 281
Query: 181 YAHLAAFRARFYMEPEMSENQTSKS 255
YAHLAAFRARFYMEPE S++ + S
Sbjct: 282 YAHLAAFRARFYMEPETSDSGSLSS 356
Score = 96.8 bits (205), Expect(2) = 5e-024
Identities = 53/78 (67%), Positives = 56/78 (71%)
Frame = -1 / -3
Query: 236 SDISGSMXXXXXXXXRCA*YAGGTTETERVHRA*V*QRLFVSVCISSAVKLFSSQRTW** 57
SD+SGS+ R A*YAGGT ET+RVH A V*QRL V C SAV LFSSQRT *
Sbjct: 337 SDVSGSI*NRARNAARWA*YAGGTIETDRVHLAYV*QRLLVKDCNPSAVNLFSSQRT**W 158
Query: 56 AGLLVPWIPA*LQR*KSN 3
AGLLVP IPA LQR*KSN
Sbjct: 157 AGLLVP*IPAWLQR*KSN 104
Score = 45.1 bits (92), Expect(2) = 4e-055
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +1 / +3
Query: 247 SKSSNGTNGGLVKPLPAVKEKVKRVMFYC* 336
S+S+ G V+PLPA+KE VKRVMFYC*
Sbjct: 396 SRSTRVPAGTSVRPLPALKENVKRVMFYC* 485
Score = 34.1 bits (68), Expect(2) = 5e-024
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = -1 / -3
Query: 332 Q*NITLFTFSFTAGRGFTKPP 270
Q*NITL TFSF AG+G T P
Sbjct: 481 Q*NITLLTFSFKAGKGRTLVP 419
>gb|DR091080.1|DR091080 RTAL1_19_F09.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_19_F09_A029 3', mRNA sequence
Length = 741
Score = 190 bits (409), Expect(2) = 4e-055
Identities = 73/85 (85%), Positives = 79/85 (92%)
Frame = +1 / +1
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDFYLCSHAGIQGTSRPAHYHVLWDEN FTAD +Q+LTNNLCYTYARCTRSVS+VPPAY
Sbjct: 79 EFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAY 258
Query: 181 YAHLAAFRARFYMEPEMSENQTSKS 255
YAHLAAFRARFYMEPE S++ + S
Sbjct: 259 YAHLAAFRARFYMEPETSDSGSLSS 333
Score = 96.8 bits (205), Expect(2) = 5e-024
Identities = 53/78 (67%), Positives = 56/78 (71%)
Frame = -1 / -2
Query: 236 SDISGSMXXXXXXXXRCA*YAGGTTETERVHRA*V*QRLFVSVCISSAVKLFSSQRTW** 57
SD+SGS+ R A*YAGGT ET+RVH A V*QRL V C SAV LFSSQRT *
Sbjct: 314 SDVSGSI*NRARNAARWA*YAGGTIETDRVHLAYV*QRLLVKDCNPSAVNLFSSQRT**W 135
Query: 56 AGLLVPWIPA*LQR*KSN 3
AGLLVP IPA LQR*KSN
Sbjct: 134 AGLLVP*IPAWLQR*KSN 81
Score = 45.1 bits (92), Expect(2) = 4e-055
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +1 / +1
Query: 247 SKSSNGTNGGLVKPLPAVKEKVKRVMFYC* 336
S+S+ G V+PLPA+KE VKRVMFYC*
Sbjct: 373 SRSTRVPAGTSVRPLPALKENVKRVMFYC* 462
Score = 34.1 bits (68), Expect(2) = 5e-024
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = -1 / -2
Query: 332 Q*NITLFTFSFTAGRGFTKPP 270
Q*NITL TFSF AG+G T P
Sbjct: 458 Q*NITLLTFSFKAGKGRTLVP 396
>gb|CF389519.1|CF389519 RTDR2_8_B11.b1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_8_B11_A021 3', mRNA
sequence
Length = 645
Score = 190 bits (409), Expect(2) = 4e-055
Identities = 73/85 (85%), Positives = 79/85 (92%)
Frame = +1 / +2
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDFYLCSHAGIQGTSRPAHYHVLWDEN FTAD +Q+LTNNLCYTYARCTRSVS+VPPAY
Sbjct: 71 EFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAY 250
Query: 181 YAHLAAFRARFYMEPEMSENQTSKS 255
YAHLAAFRARFYMEPE S++ + S
Sbjct: 251 YAHLAAFRARFYMEPETSDSGSLSS 325
Score = 96.8 bits (205), Expect(2) = 5e-024
Identities = 53/78 (67%), Positives = 56/78 (71%)
Frame = -1 / -1
Query: 236 SDISGSMXXXXXXXXRCA*YAGGTTETERVHRA*V*QRLFVSVCISSAVKLFSSQRTW** 57
SD+SGS+ R A*YAGGT ET+RVH A V*QRL V C SAV LFSSQRT *
Sbjct: 306 SDVSGSI*NRARNAARWA*YAGGTIETDRVHLAYV*QRLLVKDCNPSAVNLFSSQRT**W 127
Query: 56 AGLLVPWIPA*LQR*KSN 3
AGLLVP IPA LQR*KSN
Sbjct: 126 AGLLVP*IPAWLQR*KSN 73
Score = 45.1 bits (92), Expect(2) = 4e-055
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +1 / +2
Query: 247 SKSSNGTNGGLVKPLPAVKEKVKRVMFYC* 336
S+S+ G V+PLPA+KE VKRVMFYC*
Sbjct: 365 SRSTRVPAGTSVRPLPALKENVKRVMFYC* 454
Score = 34.1 bits (68), Expect(2) = 5e-024
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = -1 / -1
Query: 332 Q*NITLFTFSFTAGRGFTKPP 270
Q*NITL TFSF AG+G T P
Sbjct: 450 Q*NITLLTFSFKAGKGRTLVP 388
>gb|DR095290.1|DR095290 STRR1_20_C06.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_20_C06_A033 3', mRNA sequence
Length = 806
Score = 185 bits (398), Expect(2) = 5e-055
Identities = 69/80 (86%), Positives = 77/80 (96%)
Frame = +1 / +3
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDFYLCSHAGIQGTSRPAHYHVLWD+N F+AD +Q+LTNNLCYTYARCTRSVS+VPPAY
Sbjct: 240 EFDFYLCSHAGIQGTSRPAHYHVLWDDNRFSADALQSLTNNLCYTYARCTRSVSIVPPAY 419
Query: 181 YAHLAAFRARFYMEPEMSEN 240
YAHLAAFRARFY+EPE S++
Sbjct: 420 YAHLAAFRARFYIEPETSDS 479
Score = 110 bits (234), Expect(2) = 4e-028
Identities = 57/78 (73%), Positives = 60/78 (76%)
Frame = -1 / -2
Query: 236 SDISGSMXXXXXXXXRCA*YAGGTTETERVHRA*V*QRLFVSVCISSAVKLFSSQRTW** 57
SD+SGSM RCA*YAGGT ETERVHRA V*QRLFV C +SA+ L SS RT **
Sbjct: 475 SDVSGSM*KRARNAARCA*YAGGTIETERVHRAYV*QRLFVKDCKASALNLLSSHRT*** 296
Query: 56 AGLLVPWIPA*LQR*KSN 3
AGLLVP IPA*LQR*KSN
Sbjct: 295 AGLLVP*IPA*LQR*KSN 242
Score = 49.6 bits (102), Expect(2) = 5e-055
Identities = 20/35 (57%), Positives = 24/35 (68%)
Frame = +1 / +3
Query: 232 SENQTSKSSNGTNGGLVKPLPAVKEKVKRVMFYC* 336
S + T + GT V+PLPA+KE VKRVMFYC*
Sbjct: 522 SSSGTRSTRPGTGAAAVRPLPAIKENVKRVMFYC* 626
Score = 34.5 bits (69), Expect(2) = 4e-028
Identities = 16/24 (66%), Positives = 17/24 (70%)
Frame = -1 / -2
Query: 332 Q*NITLFTFSFTAGRGFTKPPFVP 261
Q*NITLFTFS AG+G T VP
Sbjct: 622 Q*NITLFTFSLIAGKGRTAAAPVP 551
>gb|CO365327.1|CO365327 RTK1_25_B06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_25_B06_A029 3', mRNA sequence
Length = 755
Score = 188 bits (405), Expect(2) = 1e-054
Identities = 72/85 (84%), Positives = 78/85 (91%)
Frame = +1 / +3
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDFYLCSHAGIQGTSRPAHYHVLWDEN FTAD +Q+LTNN CYTYARCTRSVS+VPPAY
Sbjct: 93 EFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNFCYTYARCTRSVSIVPPAY 272
Query: 181 YAHLAAFRARFYMEPEMSENQTSKS 255
YAHLAAFRARFYMEPE S++ + S
Sbjct: 273 YAHLAAFRARFYMEPETSDSGSLSS 347
Score = 95.5 bits (202), Expect(2) = 1e-023
Identities = 52/78 (66%), Positives = 56/78 (71%)
Frame = -1 / -2
Query: 236 SDISGSMXXXXXXXXRCA*YAGGTTETERVHRA*V*QRLFVSVCISSAVKLFSSQRTW** 57
SD+SGS+ R A*YAGGT ET+RVH A V*Q+L V C SAV LFSSQRT *
Sbjct: 328 SDVSGSI*NRARNAARWA*YAGGTIETDRVHLAYV*QKLLVKDCNPSAVNLFSSQRT**W 149
Query: 56 AGLLVPWIPA*LQR*KSN 3
AGLLVP IPA LQR*KSN
Sbjct: 148 AGLLVP*IPAWLQR*KSN 95
Score = 45.1 bits (92), Expect(2) = 1e-054
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +1 / +3
Query: 247 SKSSNGTNGGLVKPLPAVKEKVKRVMFYC* 336
S+S+ G V+PLPA+KE VKRVMFYC*
Sbjct: 387 SRSTRVPAGTSVRPLPALKENVKRVMFYC* 476
Score = 34.1 bits (68), Expect(2) = 1e-023
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = -1 / -2
Query: 332 Q*NITLFTFSFTAGRGFTKPP 270
Q*NITL TFSF AG+G T P
Sbjct: 472 Q*NITLLTFSFKAGKGRTLVP 410
>gb|BG040229.1|BG040229 NXSI_110_A07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_110_A07 5' similar to Arabidopsis thaliana
sequence At1g48410 Argonaute protein AGO1 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 578
Score = 190 bits (409), Expect(2) = 3e-054
Identities = 73/85 (85%), Positives = 79/85 (92%)
Frame = +1 / +2
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDFYLCSHAGIQGTSRPAHYHVLWDEN FTAD +Q+LTNNLCYTYARCTRSVS+VPPAY
Sbjct: 122 EFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAY 301
Query: 181 YAHLAAFRARFYMEPEMSENQTSKS 255
YAHLAAFRARFYMEPE S++ + S
Sbjct: 302 YAHLAAFRARFYMEPETSDSGSLSS 376
Score = 96.8 bits (205), Expect(2) = 1e-023
Identities = 53/78 (67%), Positives = 56/78 (71%)
Frame = -1 / -3
Query: 236 SDISGSMXXXXXXXXRCA*YAGGTTETERVHRA*V*QRLFVSVCISSAVKLFSSQRTW** 57
SD+SGS+ R A*YAGGT ET+RVH A V*QRL V C SAV LFSSQRT *
Sbjct: 357 SDVSGSI*NRARNAARWA*YAGGTIETDRVHLAYV*QRLLVKDCNPSAVNLFSSQRT**W 178
Query: 56 AGLLVPWIPA*LQR*KSN 3
AGLLVP IPA LQR*KSN
Sbjct: 177 AGLLVP*IPAWLQR*KSN 124
Score = 41.8 bits (85), Expect(2) = 3e-054
Identities = 16/19 (84%), Positives = 18/19 (94%)
Frame = +1 / +2
Query: 280 VKPLPAVKEKVKRVMFYC* 336
V+PLPA+KE VKRVMFYC*
Sbjct: 449 VRPLPALKENVKRVMFYC* 505
Score = 32.7 bits (65), Expect(2) = 1e-023
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = -1 / -3
Query: 332 Q*NITLFTFSFTAGRGFT 279
Q*NITL TFSF AG+G T
Sbjct: 501 Q*NITLLTFSFKAGKGRT 448
>gb|DR097306.1|DR097306 STRR1_33_G07.g3_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_33_G07_A033 5', mRNA sequence
Length = 840
Score = 182 bits (391), Expect(2) = 4e-054
Identities = 68/80 (85%), Positives = 74/80 (92%)
Frame = +1 / +2
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
E DFYLCSHAGI GTS PAHYHVLWD+N FTAD +Q+LTNNLCYTYARCTRSVS+VPPAY
Sbjct: 383 ELDFYLCSHAGIHGTSTPAHYHVLWDDNTFTADALQSLTNNLCYTYARCTRSVSIVPPAY 562
Query: 181 YAHLAAFRARFYMEPEMSEN 240
YAHLAAFRARFY+EPE S+N
Sbjct: 563 YAHLAAFRARFYLEPETSDN 622
Score = 105 bits (225), Expect(2) = 7e-027
Identities = 55/78 (70%), Positives = 59/78 (75%)
Frame = -1 / -1
Query: 236 SDISGSMXXXXXXXXRCA*YAGGTTETERVHRA*V*QRLFVSVCISSAVKLFSSQRTW** 57
SD+SGS RCA*YAGGT ETERVHRA V*QRLFV C +SAV + SS RT **
Sbjct: 618 SDVSGSK*KRARNAARCA*YAGGTIETERVHRAYV*QRLFVKDCKASAVNVLSSHRT*** 439
Query: 56 AGLLVPWIPA*LQR*KSN 3
AG+LVP IPA*LQR*KSN
Sbjct: 438 AGVLVP*IPA*LQR*KSN 385
Score = 49.6 bits (102), Expect(2) = 4e-054
Identities = 20/35 (57%), Positives = 24/35 (68%)
Frame = +1 / +2
Query: 232 SENQTSKSSNGTNGGLVKPLPAVKEKVKRVMFYC* 336
S + T + GT V+PLPA+KE VKRVMFYC*
Sbjct: 665 SSSGTRSTRPGTGAAAVRPLPAIKENVKRVMFYC* 769
Score = 34.5 bits (69), Expect(2) = 7e-027
Identities = 16/24 (66%), Positives = 17/24 (70%)
Frame = -1 / -1
Query: 332 Q*NITLFTFSFTAGRGFTKPPFVP 261
Q*NITLFTFS AG+G T VP
Sbjct: 765 Q*NITLFTFSLIAGKGRTAAAPVP 694
>gb|BG317563.1|BG317563 NXPV_003_C07_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_003_C07 5' similar to Arabidopsis
thaliana sequence At1g48410 Argonaute protein AGO1 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 332
Score = 190 bits (409), Expect = 9e-048
Identities = 73/85 (85%), Positives = 79/85 (92%)
Frame = +1 / +3
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDFYLCSHAGIQGTSRPAHYHVLWDEN FTAD +Q+LTNNLCYTYARCTRSVS+VPPAY
Sbjct: 3 EFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAY 182
Query: 181 YAHLAAFRARFYMEPEMSENQTSKS 255
YAHLAAFRARFYMEPE S++ + S
Sbjct: 183 YAHLAAFRARFYMEPETSDSGSLSS 257
>gb|CO365529.1|CO365529 RTK1_17_C10.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_17_C10_A029 5', mRNA sequence
Length = 831
Score = 190 bits (409), Expect = 9e-048
Identities = 73/85 (85%), Positives = 79/85 (92%)
Frame = +1 / +2
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDFYLCSHAGIQGTSRPAHYHVLWDEN FTAD +Q+LTNNLCYTYARCTRSVS+VPPAY
Sbjct: 515 EFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAY 694
Query: 181 YAHLAAFRARFYMEPEMSENQTSKS 255
YAHLAAFRARFYMEPE S++ + S
Sbjct: 695 YAHLAAFRARFYMEPETSDSGSLSS 769
>gb|DR017625.1|DR017625 STRS1_17_B02.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_17_B02_A034 5', mRNA sequence
Length = 626
Score = 190 bits (409), Expect = 9e-048
Identities = 73/85 (85%), Positives = 79/85 (92%)
Frame = +1 / +2
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDFYLCSHAGIQGTSRPAHYHVLWDEN FTAD +Q+LTNNLCYTYARCTRSVS+VPPAY
Sbjct: 287 EFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAY 466
Query: 181 YAHLAAFRARFYMEPEMSENQTSKS 255
YAHLAAFRARFYMEPE S++ + S
Sbjct: 467 YAHLAAFRARFYMEPETSDSGSLSS 541
>gb|DR177283.1|DR177283 RTMNUT1_4_H01.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_4_H01_A029 3', mRNA sequence
Length = 637
Score = 124 bits (266), Expect(3) = 2e-045
Identities = 47/52 (90%), Positives = 50/52 (96%)
Frame = +1 / +3
Query: 22 SHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPA 177
SHAGIQGTSRPAHYHVLWDEN FTAD +Q+LTNNLCYTYARCTRSVS+VPPA
Sbjct: 3 SHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPA 158
Score = 51.0 bits (105), Expect(3) = 2e-045
Identities = 20/29 (68%), Positives = 23/29 (79%)
Frame = +1 / +1
Query: 169 PPAYYAHLAAFRARFYMEPEMSENQTSKS 255
P YYAHLAAFRARFYMEPE S++ + S
Sbjct: 151 PQRYYAHLAAFRARFYMEPETSDSGSLSS 237
Score = 45.1 bits (92), Expect(3) = 2e-045
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +1 / +1
Query: 247 SKSSNGTNGGLVKPLPAVKEKVKRVMFYC* 336
S+S+ G V+PLPA+KE VKRVMFYC*
Sbjct: 277 SRSTRVPAGTSVRPLPALKENVKRVMFYC* 366
>gb|AI725280.1|AI725280 1146 PtIFG2 Pinus taeda cDNA clone 9201r, mRNA sequence
Length = 580
Score = 182 bits (391), Expect = 3e-045
Identities = 69/76 (90%), Positives = 73/76 (96%)
Frame = +1 / +1
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDFYLCSHAGIQGTSRPAHYHVLWDEN FTAD +Q+LTNNLCYTYARCTRSVS+VPPAY
Sbjct: 160 EFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAY 339
Query: 181 YAHLAAFRARFYMEPE 228
YAHLAAFRARF MEP+
Sbjct: 340 YAHLAAFRARFXMEPQ 387
>gb|BX679820.1|BX679820 BX679820 RS Pinus pinaster cDNA clone RS34D06, mRNA sequence
Length = 646
Score = 179 bits (386), Expect = 1e-044
Identities = 70/85 (82%), Positives = 76/85 (89%)
Frame = +1 / +3
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
E DF LCSHAGIQGTSRPAHYHVLWDEN FTAD +Q+LTNNLCYTYARCTRSVS+V PAY
Sbjct: 369 ELDFNLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVTPAY 548
Query: 181 YAHLAAFRARFYMEPEMSENQTSKS 255
YAHLAAFRARFYMEPE S++ + S
Sbjct: 549 YAHLAAFRARFYMEPETSDSGSLSS 623
>gb|CF670190.1|CF670190 RTCNT1_48_D08.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_48_D08_A029 5', mRNA sequence
Length = 797
Score = 179 bits (385), Expect = 2e-044
Identities = 68/73 (93%), Positives = 71/73 (97%)
Frame = +1 / +3
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDFYLCSHAGIQGTSRPAHYHVLWDEN FTAD +Q+LTNNLCYTYARCTRSVS+VPPAY
Sbjct: 579 EFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAY 758
Query: 181 YAHLAAFRARFYM 219
YAHLAAFRARFYM
Sbjct: 759 YAHLAAFRARFYM 797
>gb|CX713279.1|CX713279 RTPQ1_8_D01.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_8_D01_A032 3', mRNA sequence
Length = 821
Score = 162 bits (348), Expect(2) = 4e-043
Identities = 61/85 (71%), Positives = 72/85 (84%)
Frame = +1 / -3
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDFYLCSH+GI+GTSRP HYHVLWDENNF +DE+Q L NNLCYT+ RCT+ VS+VP AY
Sbjct: 384 EFDFYLCSHSGIKGTSRPTHYHVLWDENNFLSDELQQLINNLCYTFVRCTKPVSLVPLAY 205
Query: 181 YAHLAAFRARFYMEPEMSENQTSKS 255
YAHLAA+RAR Y+E S ++TS S
Sbjct: 204 YAHLAAYRARLYLEKSGSISETSSS 130
Score = 32.7 bits (65), Expect(2) = 4e-043
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +1 / -3
Query: 286 PLPAVKEKVKRVMFYC*R 339
PLP + E VK++MFYC*+
Sbjct: 54 PLPKLNENVKKLMFYC*K 1
>gb|CX713355.1|CX713355 RTPQ1_8_D01.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_8_D01_A032 5', mRNA sequence
Length = 793
Score = 162 bits (348), Expect(2) = 4e-043
Identities = 61/85 (71%), Positives = 72/85 (84%)
Frame = +1 / -3
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
EFDFYLCSH+GI+GTSRP HYHVLWDENNF +DE+Q L NNLCYT+ RCT+ VS+VP AY
Sbjct: 515 EFDFYLCSHSGIKGTSRPTHYHVLWDENNFLSDELQQLINNLCYTFVRCTKPVSLVPLAY 336
Query: 181 YAHLAAFRARFYMEPEMSENQTSKS 255
YAHLAA+RAR Y+E S ++TS S
Sbjct: 335 YAHLAAYRARLYLEKSGSISETSSS 261
Score = 32.7 bits (65), Expect(2) = 4e-043
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +1 / -3
Query: 286 PLPAVKEKVKRVMFYC*R 339
PLP + E VK++MFYC*+
Sbjct: 185 PLPKLNENVKKLMFYC*K 132
>gb|DR053121.1|DR053121 RTCA1_9_D06.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_9_D06_A029 3', mRNA sequence
Length = 621
Score = 144 bits (308), Expect(2) = 2e-041
Identities = 55/67 (82%), Positives = 61/67 (91%)
Frame = +1 / +1
Query: 55 AHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPEMS 234
AHYHVLWDEN FTAD +Q+LTNNLCYTYARCTRSVS+VPPAYYAHLAAFRARFYMEPE S
Sbjct: 1 AHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETS 180
Query: 235 ENQTSKS 255
++ + S
Sbjct: 181 DSGSLSS 201
Score = 45.1 bits (92), Expect(2) = 2e-041
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +1 / +1
Query: 247 SKSSNGTNGGLVKPLPAVKEKVKRVMFYC* 336
S+S+ G V+PLPA+KE VKRVMFYC*
Sbjct: 241 SRSTRVPAGTSVRPLPALKENVKRVMFYC* 330
>gb|CO165691.1|CO165691 FLD1_56_G11.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_56_G11_A029 3', mRNA sequence
Length = 818
Score = 144 bits (308), Expect = 8e-034
Identities = 56/90 (62%), Positives = 70/90 (77%)
Frame = +1 / +1
Query: 4 FDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYY 183
FDFYLCSHAGI+GTS+PAHY+VL DEN FT +++Q LTN+LC+TYARCTRSVS+VP YY
Sbjct: 169 FDFYLCSHAGIKGTSKPAHYNVLQDENGFTPNDIQRLTNDLCFTYARCTRSVSIVPACYY 348
Query: 184 AHLAAFRARFYMEPEMSENQTSKSSNGTNG 273
AHLAA RAR +++ +S S +G
Sbjct: 349 AHLAAKRARVWLDSGISSESGSFHGRSVSG 438
>gb|CO165762.1|CO165762 FLD1_56_G11.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_56_G11_A029 5', mRNA sequence
Length = 844
Score = 144 bits (308), Expect = 8e-034
Identities = 56/90 (62%), Positives = 70/90 (77%)
Frame = +1 / +2
Query: 4 FDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYY 183
FDFYLCSHAGI+GTS+PAHY+VL DEN FT +++Q LTN+LC+TYARCTRSVS+VP YY
Sbjct: 452 FDFYLCSHAGIKGTSKPAHYNVLQDENGFTPNDIQRLTNDLCFTYARCTRSVSIVPACYY 631
Query: 184 AHLAAFRARFYMEPEMSENQTSKSSNGTNG 273
AHLAA RAR +++ +S S +G
Sbjct: 632 AHLAAKRARVWLDSGISSESGSFHGRSVSG 721
>gb|DR020687.1|DR020687 STRS1_38_D07.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_38_D07_A034 5', mRNA sequence
Length = 533
Score = 144 bits (308), Expect = 8e-034
Identities = 56/90 (62%), Positives = 70/90 (77%)
Frame = +1 / +3
Query: 4 FDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYY 183
FDFYLCSHAGI+GTS+PAHY+VL DEN FT +++Q LTN+LC+TYARCTRSVS+VP YY
Sbjct: 252 FDFYLCSHAGIKGTSKPAHYNVLQDENGFTPNDIQRLTNDLCFTYARCTRSVSIVPACYY 431
Query: 184 AHLAAFRARFYMEPEMSENQTSKSSNGTNG 273
AHLAA RAR +++ +S S +G
Sbjct: 432 AHLAAKRARVWLDSGISSESGSFHGRSVSG 521
>gb|DR059299.1|DR059299 RTNIT1_16_H03.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_16_H03_A029 5', mRNA sequence
Length = 685
Score = 144 bits (308), Expect = 8e-034
Identities = 56/90 (62%), Positives = 70/90 (77%)
Frame = +1 / -3
Query: 4 FDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYY 183
FDFYLCSHAGI+GTS+PAHY+VL DEN FT +++Q LTN+LC+TYARCTRSVS+VP YY
Sbjct: 545 FDFYLCSHAGIKGTSKPAHYNVLQDENGFTPNDIQRLTNDLCFTYARCTRSVSIVPACYY 366
Query: 184 AHLAAFRARFYMEPEMSENQTSKSSNGTNG 273
AHLAA RAR +++ +S S +G
Sbjct: 365 AHLAAKRARVWLDSGISSESGSFHGRSVSG 276
>gb|CO368589.1|CO368589 RTK1_41_C07.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_41_C07_A029 5', mRNA sequence
Length = 741
Score = 143 bits (307), Expect = 1e-033
Identities = 49/74 (66%), Positives = 63/74 (85%)
Frame = +1 / +2
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
+FDFYLCSH G+ GTS+P HYHVLWD+N F++DE++TL NNLCYT+ARCT+ VS+ PP Y
Sbjct: 134 QFDFYLCSHNGLLGTSKPTHYHVLWDDNRFSSDELETLINNLCYTFARCTKPVSLAPPVY 313
Query: 181 YAHLAAFRARFYME 222
YA LAA+R R Y++
Sbjct: 314 YADLAAYRGRLYLQ 355
>gb|CX651686.1|CX651686 COLD1_54_D03.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_54_D03_A029 3', mRNA sequence
Length = 686
Score = 143 bits (307), Expect = 1e-033
Identities = 49/74 (66%), Positives = 63/74 (85%)
Frame = +1 / -3
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
+FDFYLCSH G+ GTS+P HYHVLWD+N F++DE++TL NNLCYT+ARCT+ VS+ PP Y
Sbjct: 417 QFDFYLCSHNGLLGTSKPTHYHVLWDDNRFSSDELETLINNLCYTFARCTKPVSLAPPVY 238
Query: 181 YAHLAAFRARFYME 222
YA LAA+R R Y++
Sbjct: 237 YADLAAYRGRLYLQ 196
>gb|CX651761.1|CX651761 COLD1_54_D03.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_54_D03_A029 5', mRNA sequence
Length = 722
Score = 143 bits (307), Expect = 1e-033
Identities = 49/74 (66%), Positives = 63/74 (85%)
Frame = +1 / -2
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
+FDFYLCSH G+ GTS+P HYHVLWD+N F++DE++TL NNLCYT+ARCT+ VS+ PP Y
Sbjct: 670 QFDFYLCSHNGLLGTSKPTHYHVLWDDNRFSSDELETLINNLCYTFARCTKPVSLAPPVY 491
Query: 181 YAHLAAFRARFYME 222
YA LAA+R R Y++
Sbjct: 490 YADLAAYRGRLYLQ 449
>gb|BX681875.1|BX681875 BX681875 RS Pinus pinaster cDNA clone RS66B04, mRNA sequence
Length = 557
Score = 142 bits (305), Expect = 2e-033
Identities = 55/90 (61%), Positives = 70/90 (77%)
Frame = +1 / +1
Query: 4 FDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYY 183
FDFYLCSHAGI+GTS+PAHY+VL DEN FT +++Q LTN+LC+TYARCTRSVS+VP YY
Sbjct: 223 FDFYLCSHAGIKGTSKPAHYNVLQDENGFTPNDIQRLTNDLCFTYARCTRSVSIVPACYY 402
Query: 184 AHLAAFRARFYMEPEMSENQTSKSSNGTNG 273
AHLAA RAR +++ ++ S +G
Sbjct: 403 AHLAAKRARVWLDSGINSESGSFHGRSVSG 492
>gb|CO364433.1|CO364433 RTK1_15_E04.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_15_E04_A029 5', mRNA sequence
Length = 643
Score = 132 bits (283), Expect(2) = 4e-033
Identities = 50/77 (64%), Positives = 63/77 (81%)
Frame = +1 / -1
Query: 4 FDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYY 183
FDFY CSHAGI+GTS+PAHY+V DEN F +++Q LTN+LC+TYARCTR VS+VP YY
Sbjct: 547 FDFYFCSHAGIKGTSKPAHYNVFQDENGFPPNDIQRLTNDLCFTYARCTRFVSIVPACYY 368
Query: 184 AHLAAFRARFYMEPEMS 234
AHLAA RAR +++ +S
Sbjct: 367 AHLAAKRARVWLDSGIS 317
Score = 29.0 bits (57), Expect(2) = 4e-033
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1 / -1
Query: 268 NGGLVKPLPAVKEKVKRVMFYC*RG 342
+G +KPLP V ++K MF+ * G
Sbjct: 247 SGTFMKPLPPVHGRIKNFMFFI*SG 173
>gb|BQ633982.1|BQ633982 NXRV063_D02_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV063_D02 5' similar to Arabidopsis thaliana
sequence At1g69440 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 615
Score = 137 bits (293), Expect = 9e-032
Identities = 48/73 (65%), Positives = 61/73 (83%)
Frame = +1 / +1
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
+FD YLCSH G+ GTS+ HYHVLWD+N F++DE++TL NNLCYT+ARCT+ VS+ PP Y
Sbjct: 268 QFDGYLCSHNGLLGTSKRTHYHVLWDDNRFSSDELETLINNLCYTFARCTKPVSLAPPVY 447
Query: 181 YAHLAAFRARFYM 219
YA LAA+R RFY+
Sbjct: 448 YADLAAYRGRFYL 486
>gb|DR019332.1|DR019332 STRS1_29_F12.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_29_F12_A034 3', mRNA sequence
Length = 746
Score = 119 bits (254), Expect(2) = 1e-030
Identities = 40/58 (68%), Positives = 51/58 (87%)
Frame = +1 / +1
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPP 174
+FDFYLCSH G+ GTS+P HYHVLWD+N F++DE++TL NNLCYT+ARCT+ VS+ PP
Sbjct: 82 QFDFYLCSHNGLLGTSKPTHYHVLWDDNRFSSDELETLINNLCYTFARCTKPVSLAPP 255
Score = 33.6 bits (67), Expect(2) = 1e-030
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1 / +2
Query: 169 PPAYYAHLAAFRARFYME 222
PP YYA LAA+R R Y++
Sbjct: 251 PPVYYADLAAYRGRLYLQ 304
>gb|DR694441.1|DR694441 EST1084533 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEC49 3' end, mRNA sequence
Length = 824
Score = 130 bits (279), Expect = 8e-030
Identities = 45/65 (69%), Positives = 56/65 (86%)
Frame = +1 / +2
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAY 180
+FDFYLCSH G+ GTS+P HYHVLWD+N F++DE++TL NNLCYT+ARCT+ VS+ PP Y
Sbjct: 629 QFDFYLCSHNGLLGTSKPTHYHVLWDDNRFSSDELETLINNLCYTFARCTKPVSLAPPVY 808
Query: 181 YAHLA 195
YA LA
Sbjct: 809 YADLA 823
>gb|CO157755.1|CO157755 FLD1_1_H02.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_1_H02_A029 5', mRNA sequence
Length = 706
Score = 103 bits (219), Expect(2) = 6e-025
Identities = 42/84 (50%), Positives = 55/84 (65%)
Frame = +1 / +2
Query: 4 FDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYY 183
FDFYLC AG GTSRP HYHVL DEN+FT D++Q L + L Y Y R T ++S V P Y
Sbjct: 284 FDFYLCPQAGPIGTSRPTHYHVLLDENSFTVDDLQILVHALSYVYQRSTTAISSVAPINY 463
Query: 184 AHLAAFRARFYMEPEMSENQTSKS 255
AHLAA + + +++ + S+S
Sbjct: 464 AHLAATQMQQFLKADELSETASRS 535
Score = 30.9 bits (61), Expect(2) = 6e-025
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1 / +2
Query: 232 SENQTSKSSNGTNGGLVKPLPAVKEKVKRVMFYC*R 339
S + ++ S + G V LPA+ + V MF+C*R
Sbjct: 527 SRSGRAEGSTASGGAHVPELPALHQNVCHTMFFC*R 634
>gb|DR050119.1|DR050119 RTBOR1_21_H11.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_21_H11_A029 3', mRNA sequence
Length = 848
Score = 103 bits (219), Expect(2) = 3e-024
Identities = 42/84 (50%), Positives = 55/84 (65%)
Frame = +1 / +2
Query: 4 FDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYY 183
FDFYLC AG GTSRP HYHVL DEN+FT D++Q L + L Y Y R T ++S V P Y
Sbjct: 164 FDFYLCPQAGPIGTSRPTHYHVLLDENSFTVDDLQILVHALSYVYQRSTTAISSVAPINY 343
Query: 184 AHLAAFRARFYMEPEMSENQTSKS 255
AHLAA + + +++ + S+S
Sbjct: 344 AHLAATQMQQFLKADELSETASRS 415
Score = 28.6 bits (56), Expect(2) = 3e-024
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1 / +2
Query: 232 SENQTSKSSNGTNGGLVKPLPAVKEKVKRVMFYC* 336
S + ++ S + G V LPA+ + V MF+C*
Sbjct: 407 SRSGRAEGSTASGGAHVPELPALHQNVCHTMFFC* 511
>gb|DR050199.1|DR050199 RTBOR1_21_H11.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_21_H11_A029 5', mRNA sequence
Length = 830
Score = 103 bits (219), Expect(2) = 4e-024
Identities = 42/84 (50%), Positives = 55/84 (65%)
Frame = +1 / +2
Query: 4 FDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYY 183
FDFYLC AG GTSRP HYHVL DEN+FT D++Q L + L Y Y R T ++S V P Y
Sbjct: 485 FDFYLCPQAGPIGTSRPTHYHVLLDENSFTVDDLQILVHALSYVYQRSTTAISSVAPINY 664
Query: 184 AHLAAFRARFYMEPEMSENQTSKS 255
AHLAA + + +++ + S+S
Sbjct: 665 AHLAATQMQQFLKADELSETASRS 736
Score = 28.1 bits (55), Expect(2) = 4e-024
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1 / +2
Query: 232 SENQTSKSSNGTNGGLVKPLPAVKEKVKRVMFYC 333
S + ++ S + G V LPA+ + V MF+C
Sbjct: 728 SRSGRAEGSTASGGAHVPELPALHQNVCHTMFFC 829
>gb|CF393001.1|CF393001 RTDR3_18_E12.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_18_E12_A022 5', mRNA
sequence
Length = 748
Score = 105 bits (225), Expect = 2e-022
Identities = 39/43 (90%), Positives = 41/43 (95%)
Frame = +1 / +3
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLC 129
EFDFYLCSHAGIQGTSRPAHYHVLWDEN FTAD +Q+LTNNLC
Sbjct: 618 EFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNLC 746
>gb|CO157756.1|CO157756 FLD1_1_H03.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_1_H03_A029 5', mRNA sequence
Length = 441
Score = 103 bits (219), Expect = 1e-021
Identities = 42/84 (50%), Positives = 55/84 (65%)
Frame = +1 / +2
Query: 4 FDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYY 183
FDFYLC AG GTSRP HYHVL DEN+FT D++Q L + L Y Y R T ++S V P Y
Sbjct: 179 FDFYLCPQAGPIGTSRPTHYHVLLDENSFTVDDLQILVHALSYVYQRSTTAISSVAPINY 358
Query: 184 AHLAAFRARFYMEPEMSENQTSKS 255
AHLAA + + +++ + S+S
Sbjct: 359 AHLAATQMQQFLKADELSETASRS 430
>gb|BF518099.1|BF518099 NXSI_035_A04_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_035_A04 5' similar to Arabidopsis thaliana
sequence At5g21150 zwille/pinhead-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 513
Score = 101 bits (216), Expect = 4e-021
Identities = 42/92 (45%), Positives = 57/92 (61%)
Frame = +1 / +1
Query: 4 FDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYY 183
FDF+LC AG GTSRP HYHVL DEN+F+ D++Q L + L Y Y R T ++S V P Y
Sbjct: 229 FDFFLCPQAGPIGTSRPTHYHVLLDENDFSVDDLQILVHALSYVYQRSTTAISSVAPINY 408
Query: 184 AHLAAFRARFYMEPEMSENQTSKSSNGTNGGL 279
AHLAA + + +++ E S+ S G +
Sbjct: 409 AHLAASQMQQFLKAEXLSETASRLSGKGEGSV 504
>gb|CO369078.1|CO369078 RTK1_44_F12.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_44_F12_A029 5', mRNA sequence
Length = 779
Score = 101 bits (216), Expect = 4e-021
Identities = 38/42 (90%), Positives = 40/42 (95%)
Frame = +1 / +1
Query: 1 EFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNL 126
EFDFYLCSHAGIQGTSRPAHYHVLWDEN FTAD +Q+LTNNL
Sbjct: 652 EFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQSLTNNL 777
>gb|CF479079.1|CF479079 RTWW3_21_F03.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_21_F03_A022 5', mRNA sequence
Length = 736
Score = 100 bits (214), Expect = 7e-021
Identities = 42/92 (45%), Positives = 57/92 (61%)
Frame = +1 / +1
Query: 4 FDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEMQTLTNNLCYTYARCTRSVSVVPPAYY 183
FDF+LC AG GTSRP HYHVL DEN+F+ D++Q L + L Y Y R T ++S V P Y
Sbjct: 349 FDFFLCPQAGPIGTSRPTHYHVLLDENDFSVDDLQILVHALSYVYQRSTTAISSVAPINY 528
Query: 184 AHLAAFRARFYMEPEMSENQTSKSSNGTNGGL 279
AHLAA + + +++ E S+ S G +
Sbjct: 529 AHLAASQMQQFLKAEDLSETASRLSGKGEGSV 624
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 351,030,625
Number of Sequences: 355925
Number of extensions: 5061211
Number of successful extensions: 49437
Number of sequences better than 1.0e-020: 54
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 8683771200
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)