TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161284.2.6
(621 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX255785.1|BX255785 BX255785 Pinus pinaster differenciat... 166 9e-041
gb|CF475569.1|CF475569 RTWW2_11_H05.b1_A021 Well-watered lo... 166 9e-041
gb|CF475702.1|CF475702 RTWW2_11_H05.g1_A021 Well-watered lo... 166 9e-041
gb|BX679963.1|BX679963 BX679963 RS Pinus pinaster cDNA clon... 166 9e-041
gb|BX681805.1|BX681805 BX681805 RS Pinus pinaster cDNA clon... 166 9e-041
gb|BX682937.1|BX682937 BX682937 Pinus pinaster differenciat... 166 9e-041
gb|CR393434.1|CR393434 CR393434 RN Pinus pinaster cDNA clon... 166 9e-041
gb|CO163924.1|CO163924 FLD1_44_D10.g1_A029 Root flooded Pin... 166 9e-041
gb|BF778851.1|BF778851 NXSI_089_B07_F NXSI (Nsf Xylem Side ... 166 1e-040
gb|CO161410.1|CO161410 FLD1_28_D05.g1_A029 Root flooded Pin... 166 2e-040
gb|BX679312.1|BX679312 BX679312 RS Pinus pinaster cDNA clon... 164 5e-040
gb|BF610511.1|BF610511 NXSI_059_E01_F NXSI (Nsf Xylem Side ... 160 6e-039
gb|BQ701397.1|BQ701397 NXSI_063_F10_F NXSI (Nsf Xylem Side ... 157 7e-038
gb|BG039320.1|BG039320 NXSI_097_G07_F NXSI (Nsf Xylem Side ... 154 7e-037
gb|CO165613.1|CO165613 FLD1_55_F07.g1_A029 Root flooded Pin... 153 9e-037
gb|BF778129.1|BF778129 NXSI_077_E04_F NXSI (Nsf Xylem Side ... 145 2e-034
gb|CF394757.1|CF394757 RTDS2_7_H04.g1_A021 Drought-stressed... 134 4e-034
gb|CF394718.1|CF394718 RTDS2_7_H04.b1_A021 Drought-stressed... 138 2e-032
gb|CO199360.1|CO199360 GEO1_20_C09.g1_A029 Root gravitropis... 109 2e-031
gb|CX649050.1|CX649050 COLD1_32_D07.g1_A029 Root cold Pinus... 109 2e-031
gb|BX250905.1|BX250905 BX250905 Pinus pinaster differenciat... 122 2e-027
gb|DR053251.1|DR053251 RTCA1_9_H11.g1_A029 Roots minus calc... 122 2e-027
gb|AW042759.1|AW042759 ST25A11 Pine TriplEx shoot tip libra... 118 3e-026
>gb|BX255785.1|BX255785 BX255785 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP009G03 similar to small nuclear
ribonucleoprotein G, mRNA sequence
Length = 609
Score = 166 bits (358), Expect = 9e-041
Identities = 71/84 (84%), Positives = 78/84 (92%)
Frame = -3 / +2
Query: 481 MSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 302
MSRSGQPPDLKKYMDKKL IK+NANRVV+GTLRGFDQFMNLV+D TVEVNGN++ +IGMV
Sbjct: 92 MSRSGQPPDLKKYMDKKLNIKLNANRVVVGTLRGFDQFMNLVLDGTVEVNGNERNEIGMV 271
Query: 301 VIRGNSVVMIEALEPVARSQ*IIV 230
VIRGNSVVMIEALEPV RS * I+
Sbjct: 272 VIRGNSVVMIEALEPVNRS**FIL 343
Score = 106 bits (227), Expect = 1e-022
Identities = 48/80 (60%), Positives = 52/80 (65%)
Frame = +3 / -1
Query: 246 DLATGSSASXXXXXXXXXXXXXXSVLSFPLTSTVLSTTRFMNWSNPRSVPITTRFAFILI 425
DL TGS AS S LSFP TSTV S T+FMNWSNPR VP TT AF +
Sbjct: 327 DLFTGSKASIITTLFPLMTTMPISFLSFPFTSTVPSRTKFMNWSNPRRVPTTTLLAFSFM 148
Query: 426 *SFLSMYFLRSGGCPERLMV 485
SFLSMYFLRSGGCP+ LM+
Sbjct: 147 LSFLSMYFLRSGGCPDLLMM 88
>gb|CF475569.1|CF475569 RTWW2_11_H05.b1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_11_H05_A021 3', mRNA sequence
Length = 603
Score = 166 bits (358), Expect = 9e-041
Identities = 71/84 (84%), Positives = 78/84 (92%)
Frame = -3 / +1
Query: 481 MSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 302
MSRSGQPPDLKKYMDKKL IK+NANRVV+GTLRGFDQFMNLV+D TVEVNGN++ +IGMV
Sbjct: 94 MSRSGQPPDLKKYMDKKLNIKLNANRVVVGTLRGFDQFMNLVLDGTVEVNGNERNEIGMV 273
Query: 301 VIRGNSVVMIEALEPVARSQ*IIV 230
VIRGNSVVMIEALEPV RS * I+
Sbjct: 274 VIRGNSVVMIEALEPVNRS**FIL 345
Score = 104 bits (221), Expect = 7e-022
Identities = 47/80 (58%), Positives = 51/80 (63%)
Frame = +3 / -2
Query: 246 DLATGSSASXXXXXXXXXXXXXXSVLSFPLTSTVLSTTRFMNWSNPRSVPITTRFAFILI 425
DL TGS AS S LS P TSTV S T+FMNWSNPR VP TT AF +
Sbjct: 329 DLLTGSKASIITTLFPLMTTMPISFLSLPFTSTVPSRTKFMNWSNPRRVPTTTLLAFNFM 150
Query: 426 *SFLSMYFLRSGGCPERLMV 485
SFLSMYFLRSGGCP+ LM+
Sbjct: 149 LSFLSMYFLRSGGCPDLLMM 90
>gb|CF475702.1|CF475702 RTWW2_11_H05.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_11_H05_A021 5', mRNA sequence
Length = 687
Score = 166 bits (358), Expect = 9e-041
Identities = 71/84 (84%), Positives = 78/84 (92%)
Frame = -3 / +2
Query: 481 MSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 302
MSRSGQPPDLKKYMDKKL IK+NANRVV+GTLRGFDQFMNLV+D TVEVNGN++ +IGMV
Sbjct: 215 MSRSGQPPDLKKYMDKKLNIKLNANRVVVGTLRGFDQFMNLVLDGTVEVNGNERNEIGMV 394
Query: 301 VIRGNSVVMIEALEPVARSQ*IIV 230
VIRGNSVVMIEALEPV RS * I+
Sbjct: 395 VIRGNSVVMIEALEPVNRS**FIL 466
Score = 104 bits (221), Expect = 7e-022
Identities = 47/80 (58%), Positives = 51/80 (63%)
Frame = +3 / -1
Query: 246 DLATGSSASXXXXXXXXXXXXXXSVLSFPLTSTVLSTTRFMNWSNPRSVPITTRFAFILI 425
DL TGS AS S LS P TSTV S T+FMNWSNPR VP TT AF +
Sbjct: 450 DLLTGSKASIITTLFPLMTTMPISFLSLPFTSTVPSRTKFMNWSNPRRVPTTTLLAFNFM 271
Query: 426 *SFLSMYFLRSGGCPERLMV 485
SFLSMYFLRSGGCP+ LM+
Sbjct: 270 LSFLSMYFLRSGGCPDLLMM 211
>gb|BX679963.1|BX679963 BX679963 RS Pinus pinaster cDNA clone RS37B03, mRNA sequence
Length = 563
Score = 166 bits (358), Expect = 9e-041
Identities = 71/84 (84%), Positives = 78/84 (92%)
Frame = -3 / +3
Query: 481 MSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 302
MSRSGQPPDLKKYMDKKL IK+NANRVV+GTLRGFDQFMNLV+D TVEVNGN++ +IGMV
Sbjct: 96 MSRSGQPPDLKKYMDKKLNIKLNANRVVVGTLRGFDQFMNLVLDGTVEVNGNERNEIGMV 275
Query: 301 VIRGNSVVMIEALEPVARSQ*IIV 230
VIRGNSVVMIEALEPV RS * I+
Sbjct: 276 VIRGNSVVMIEALEPVNRS**FIL 347
Score = 106 bits (227), Expect = 1e-022
Identities = 48/80 (60%), Positives = 52/80 (65%)
Frame = +3 / -2
Query: 246 DLATGSSASXXXXXXXXXXXXXXSVLSFPLTSTVLSTTRFMNWSNPRSVPITTRFAFILI 425
DL TGS AS S LSFP TSTV S T+FMNWSNPR VP TT AF +
Sbjct: 331 DLFTGSKASIITTLFPLMTTMPISFLSFPFTSTVPSRTKFMNWSNPRRVPTTTLLAFSFM 152
Query: 426 *SFLSMYFLRSGGCPERLMV 485
SFLSMYFLRSGGCP+ LM+
Sbjct: 151 LSFLSMYFLRSGGCPDLLMM 92
>gb|BX681805.1|BX681805 BX681805 RS Pinus pinaster cDNA clone RS65B05, mRNA sequence
Length = 609
Score = 166 bits (358), Expect = 9e-041
Identities = 71/84 (84%), Positives = 78/84 (92%)
Frame = -3 / +2
Query: 481 MSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 302
MSRSGQPPDLKKYMDKKL IK+NANRVV+GTLRGFDQFMNLV+D TVEVNGN++ +IGMV
Sbjct: 107 MSRSGQPPDLKKYMDKKLNIKLNANRVVVGTLRGFDQFMNLVLDGTVEVNGNERNEIGMV 286
Query: 301 VIRGNSVVMIEALEPVARSQ*IIV 230
VIRGNSVVMIEALEPV RS * I+
Sbjct: 287 VIRGNSVVMIEALEPVNRS**FIL 358
Score = 106 bits (227), Expect = 1e-022
Identities = 48/80 (60%), Positives = 52/80 (65%)
Frame = +3 / -1
Query: 246 DLATGSSASXXXXXXXXXXXXXXSVLSFPLTSTVLSTTRFMNWSNPRSVPITTRFAFILI 425
DL TGS AS S LSFP TSTV S T+FMNWSNPR VP TT AF +
Sbjct: 342 DLFTGSKASIITTLFPLMTTMPISFLSFPFTSTVPSRTKFMNWSNPRRVPTTTLLAFSFM 163
Query: 426 *SFLSMYFLRSGGCPERLMV 485
SFLSMYFLRSGGCP+ LM+
Sbjct: 162 LSFLSMYFLRSGGCPDLLMM 103
>gb|BX682937.1|BX682937 BX682937 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 123G04, mRNA sequence
Length = 410
Score = 166 bits (358), Expect = 9e-041
Identities = 71/84 (84%), Positives = 78/84 (92%)
Frame = -3 / +3
Query: 481 MSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 302
MSRSGQPPDLKKYMDKKL IK+NANRVV+GTLRGFDQFMNLV+D TVEVNGN++ +IGMV
Sbjct: 45 MSRSGQPPDLKKYMDKKLNIKLNANRVVVGTLRGFDQFMNLVLDGTVEVNGNERNEIGMV 224
Query: 301 VIRGNSVVMIEALEPVARSQ*IIV 230
VIRGNSVVMIEALEPV RS * I+
Sbjct: 225 VIRGNSVVMIEALEPVNRS**FIL 296
Score = 102 bits (218), Expect = 2e-021
Identities = 47/91 (51%), Positives = 55/91 (60%)
Frame = +3 / -2
Query: 246 DLATGSSASXXXXXXXXXXXXXXSVLSFPLTSTVLSTTRFMNWSNPRSVPITTRFAFILI 425
DL TGS AS S LS P TSTV S T+FMNWSNPR VP TT AF +
Sbjct: 280 DLLTGSKASIITTLFPLMTTMPISFLSLPFTSTVPSRTKFMNWSNPRRVPTTTLLAFNFM 101
Query: 426 *SFLSMYFLRSGGCPERLMVTAT*PRTRERK 518
SFLSMYFLRSGGCP+ L++ + + +K
Sbjct: 100 LSFLSMYFLRSGGCPDLLIMPLKREKAQTKK 8
>gb|CR393434.1|CR393434 CR393434 RN Pinus pinaster cDNA clone RN60B04, mRNA sequence
Length = 601
Score = 166 bits (358), Expect = 9e-041
Identities = 71/84 (84%), Positives = 78/84 (92%)
Frame = -3 / +1
Query: 481 MSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 302
MSRSGQPPDLKKYMDKKL IK+NANRVV+GTLRGFDQFMNLV+D TVEVNGN++ +IGMV
Sbjct: 97 MSRSGQPPDLKKYMDKKLNIKLNANRVVVGTLRGFDQFMNLVLDGTVEVNGNERNEIGMV 276
Query: 301 VIRGNSVVMIEALEPVARSQ*IIV 230
VIRGNSVVMIEALEPV RS * I+
Sbjct: 277 VIRGNSVVMIEALEPVNRS**FIL 348
Score = 106 bits (227), Expect = 1e-022
Identities = 48/80 (60%), Positives = 52/80 (65%)
Frame = +3 / -3
Query: 246 DLATGSSASXXXXXXXXXXXXXXSVLSFPLTSTVLSTTRFMNWSNPRSVPITTRFAFILI 425
DL TGS AS S LSFP TSTV S T+FMNWSNPR VP TT AF +
Sbjct: 332 DLFTGSKASIITTLFPLMTTMPISFLSFPFTSTVPSRTKFMNWSNPRRVPTTTLLAFSFM 153
Query: 426 *SFLSMYFLRSGGCPERLMV 485
SFLSMYFLRSGGCP+ LM+
Sbjct: 152 LSFLSMYFLRSGGCPDLLMM 93
>gb|CO163924.1|CO163924 FLD1_44_D10.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_44_D10_A029 5', mRNA sequence
Length = 881
Score = 166 bits (358), Expect = 9e-041
Identities = 71/84 (84%), Positives = 78/84 (92%)
Frame = -3 / +3
Query: 481 MSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 302
MSRSGQPPDLKKYMDKKL IK+NANRVV+GTLRGFDQFMNLV+D TVEVNGN++ +IGMV
Sbjct: 180 MSRSGQPPDLKKYMDKKLNIKLNANRVVVGTLRGFDQFMNLVLDGTVEVNGNERNEIGMV 359
Query: 301 VIRGNSVVMIEALEPVARSQ*IIV 230
VIRGNSVVMIEALEPV RS * I+
Sbjct: 360 VIRGNSVVMIEALEPVNRS**FIL 431
Score = 104 bits (222), Expect = 5e-022
Identities = 47/80 (58%), Positives = 51/80 (63%)
Frame = +3 / -2
Query: 246 DLATGSSASXXXXXXXXXXXXXXSVLSFPLTSTVLSTTRFMNWSNPRSVPITTRFAFILI 425
DL TGS AS S LS P TSTV S T+FMNWSNPR VP TT AF +
Sbjct: 415 DLLTGSKASIITTLFPLMTTMPISFLSLPFTSTVPSRTKFMNWSNPRRVPTTTLLAFSFM 236
Query: 426 *SFLSMYFLRSGGCPERLMV 485
SFLSMYFLRSGGCP+ LM+
Sbjct: 235 LSFLSMYFLRSGGCPDLLMM 176
>gb|BF778851.1|BF778851 NXSI_089_B07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_089_B07 5' similar to Arabidopsis thaliana
sequence At2g23930 putative small nuclear
ribonucleoprotein E see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 440
Score = 166 bits (357), Expect = 1e-040
Identities = 71/84 (84%), Positives = 78/84 (92%)
Frame = -3 / +2
Query: 481 MSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 302
MSRSGQPPDLKKYMDKKL IK+NANRVV+GTLRGFDQFMNLV+D TVEVNGN++ +IGMV
Sbjct: 98 MSRSGQPPDLKKYMDKKLXIKLNANRVVVGTLRGFDQFMNLVLDGTVEVNGNERNEIGMV 277
Query: 301 VIRGNSVVMIEALEPVARSQ*IIV 230
VIRGNSVVMIEALEPV RS * I+
Sbjct: 278 VIRGNSVVMIEALEPVNRS**FIL 349
Score = 104 bits (221), Expect = 7e-022
Identities = 47/80 (58%), Positives = 51/80 (63%)
Frame = +3 / -3
Query: 246 DLATGSSASXXXXXXXXXXXXXXSVLSFPLTSTVLSTTRFMNWSNPRSVPITTRFAFILI 425
DL TGS AS S LS P TSTV S T+FMNWSNPR VP TT AF +
Sbjct: 333 DLLTGSKASIITTLFPLMTTMPISFLSLPFTSTVPSRTKFMNWSNPRRVPTTTLLAFNFM 154
Query: 426 *SFLSMYFLRSGGCPERLMV 485
SFLSMYFLRSGGCP+ LM+
Sbjct: 153 XSFLSMYFLRSGGCPDLLMM 94
>gb|CO161410.1|CO161410 FLD1_28_D05.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_28_D05_A029 5', mRNA sequence
Length = 759
Score = 166 bits (356), Expect = 2e-040
Identities = 69/79 (87%), Positives = 75/79 (94%)
Frame = -3 / +2
Query: 481 MSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 302
MSRSGQPPDLKKYMDKKL IK+NANRVV+GTLRGFDQFMNLV+D TVEVNGN++ +IGMV
Sbjct: 194 MSRSGQPPDLKKYMDKKLNIKLNANRVVVGTLRGFDQFMNLVLDGTVEVNGNERNEIGMV 373
Query: 301 VIRGNSVVMIEALEPVARS 245
VIRGNSVVMIEALEPV RS
Sbjct: 374 VIRGNSVVMIEALEPVNRS 430
Score = 104 bits (222), Expect = 5e-022
Identities = 47/80 (58%), Positives = 51/80 (63%)
Frame = +3 / -1
Query: 246 DLATGSSASXXXXXXXXXXXXXXSVLSFPLTSTVLSTTRFMNWSNPRSVPITTRFAFILI 425
DL TGS AS S LS P TSTV S T+FMNWSNPR VP TT AF +
Sbjct: 429 DLLTGSKASIITTLFPLMTTMPISFLSLPFTSTVPSRTKFMNWSNPRRVPTTTLLAFSFM 250
Query: 426 *SFLSMYFLRSGGCPERLMV 485
SFLSMYFLRSGGCP+ LM+
Sbjct: 249 LSFLSMYFLRSGGCPDLLMM 190
>gb|BX679312.1|BX679312 BX679312 RS Pinus pinaster cDNA clone RS22H01, mRNA sequence
Length = 294
Score = 164 bits (353), Expect = 5e-040
Identities = 70/84 (83%), Positives = 78/84 (92%)
Frame = -3 / +1
Query: 481 MSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 302
MSRSGQPPDLKKYMDKKL IK+NANRVV+GTLRGFDQFMNLV+D TVEVNG+++ +IGMV
Sbjct: 43 MSRSGQPPDLKKYMDKKLNIKLNANRVVVGTLRGFDQFMNLVLDGTVEVNGDERNEIGMV 222
Query: 301 VIRGNSVVMIEALEPVARSQ*IIV 230
VIRGNSVVMIEALEPV RS * I+
Sbjct: 223 VIRGNSVVMIEALEPVNRS**FIL 294
Score = 101 bits (216), Expect = 4e-021
Identities = 47/91 (51%), Positives = 55/91 (60%)
Frame = +3 / -2
Query: 246 DLATGSSASXXXXXXXXXXXXXXSVLSFPLTSTVLSTTRFMNWSNPRSVPITTRFAFILI 425
DL TGS AS S LS P TSTV S T+FMNWSNPR VP TT AF +
Sbjct: 278 DLLTGSKASIITTLFPLMTTMPISFLSSPFTSTVPSRTKFMNWSNPRRVPTTTLLAFNFM 99
Query: 426 *SFLSMYFLRSGGCPERLMVTAT*PRTRERK 518
SFLSMYFLRSGGCP+ L++ + + +K
Sbjct: 98 LSFLSMYFLRSGGCPDLLIMPLKREKAQTKK 6
>gb|BF610511.1|BF610511 NXSI_059_E01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_059_E01 5' similar to Arabidopsis thaliana
sequence At2g23930 putative small nuclear
ribonucleoprotein E see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 449
Score = 160 bits (345), Expect = 6e-039
Identities = 69/84 (82%), Positives = 76/84 (90%)
Frame = -3 / +3
Query: 481 MSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 302
MSRSGQPP KKYMDKKL IK+NANRVV+GTLRGFDQFMNLV+D TVEVNGN++ +IGMV
Sbjct: 105 MSRSGQPPXXKKYMDKKLXIKLNANRVVVGTLRGFDQFMNLVLDGTVEVNGNERNEIGMV 284
Query: 301 VIRGNSVVMIEALEPVARSQ*IIV 230
VIRGNSVVMIEALEPV RS * I+
Sbjct: 285 VIRGNSVVMIEALEPVNRS**FIL 356
>gb|BQ701397.1|BQ701397 NXSI_063_F10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_063_F10 5' similar to Arabidopsis thaliana
sequence At3g11500 putative small nuclear
ribonucleoprotein polypeptide G see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 493
Score = 157 bits (337), Expect = 7e-038
Identities = 65/76 (85%), Positives = 71/76 (93%)
Frame = -3 / +1
Query: 481 MSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 302
MSRSGQPPDLKKYMDKKL IK+NANRVV+GTLRGFDQFMNLV+D TVEVNGN++ + MV
Sbjct: 199 MSRSGQPPDLKKYMDKKLNIKLNANRVVVGTLRGFDQFMNLVLDGTVEVNGNERNEXXMV 378
Query: 301 VIRGNSVVMIEALEPV 254
VIRGNSVVMIEALEPV
Sbjct: 379 VIRGNSVVMIEALEPV 426
Score = 100 bits (213), Expect = 9e-021
Identities = 47/77 (61%), Positives = 51/77 (66%)
Frame = +3 / -3
Query: 255 TGSSASXXXXXXXXXXXXXXSVLSFPLTSTVLSTTRFMNWSNPRSVPITTRFAFILI*SF 434
TGS AS S LS P TSTV S T+FMNWSNPR VP TT AF + SF
Sbjct: 425 TGSKASIITTLFPLMTTXXISFLSLPFTSTVPSRTKFMNWSNPRRVPTTTLLAFNFMLSF 246
Query: 435 LSMYFLRSGGCPERLMV 485
LSMYFLRSGGCP+ LM+
Sbjct: 245 LSMYFLRSGGCPDLLMM 195
>gb|BG039320.1|BG039320 NXSI_097_G07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_097_G07 5' similar to Arabidopsis thaliana
sequence At2g23930 putative small nuclear
ribonucleoprotein E see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 371
Score = 154 bits (330), Expect = 7e-037
Identities = 66/84 (78%), Positives = 73/84 (86%)
Frame = -3 / +3
Query: 481 MSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 302
MS GQPP KKYMDKK IK+NANRVV+GTLRGFDQFMNLV+D TVEVNGN++ +IGMV
Sbjct: 27 MSXXGQPPXXKKYMDKKXXIKLNANRVVVGTLRGFDQFMNLVLDGTVEVNGNERNEIGMV 206
Query: 301 VIRGNSVVMIEALEPVARSQ*IIV 230
VIRGNSVVMIEALEPV RS * I+
Sbjct: 207 VIRGNSVVMIEALEPVNRS**FIL 278
>gb|CO165613.1|CO165613 FLD1_55_F07.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_55_F07_A029 5', mRNA sequence
Length = 397
Score = 153 bits (329), Expect = 9e-037
Identities = 65/78 (83%), Positives = 72/78 (92%)
Frame = -3 / +2
Query: 463 PPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNS 284
PPDLKKYMDKKL IK+NANRVV+GTLRGFDQFMNLV+D TVEVNGN++ +IGMVVIRGNS
Sbjct: 2 PPDLKKYMDKKLNIKLNANRVVVGTLRGFDQFMNLVLDGTVEVNGNERNEIGMVVIRGNS 181
Query: 283 VVMIEALEPVARSQ*IIV 230
VVMIEALEPV RS * I+
Sbjct: 182 VVMIEALEPVNRS**FIL 235
>gb|BF778129.1|BF778129 NXSI_077_E04_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_077_E04 5' similar to Arabidopsis thaliana
sequence At2g23930 putative small nuclear
ribonucleoprotein E see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 504
Score = 145 bits (312), Expect = 2e-034
Identities = 61/73 (83%), Positives = 67/73 (91%)
Frame = -3 / +1
Query: 481 MSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMV 302
MSRSGQPPDLKKYMDKKL IK+NANRVV+GTL FDQFMNLV+D TVEVNGN++ +I MV
Sbjct: 253 MSRSGQPPDLKKYMDKKLNIKLNANRVVVGTLLXFDQFMNLVLDGTVEVNGNERNEIXMV 432
Query: 301 VIRGNSVVMIEAL 263
VIRGNSVVMIEAL
Sbjct: 433 VIRGNSVVMIEAL 471
>gb|CF394757.1|CF394757 RTDS2_7_H04.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_7_H04_A021 5', mRNA sequence
Length = 765
Score = 134 bits (288), Expect(2) = 4e-034
Identities = 55/65 (84%), Positives = 62/65 (95%)
Frame = -3 / +3
Query: 448 KYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSVVMIE 269
+YMDKKL IK+NANRVV+GTLRGFDQFMNLV+D TVEVNGN++ +IGMVVIRGNSVVMIE
Sbjct: 570 RYMDKKLNIKLNANRVVVGTLRGFDQFMNLVLDGTVEVNGNERNEIGMVVIRGNSVVMIE 749
Query: 268 ALEPV 254
ALEPV
Sbjct: 750 ALEPV 764
Score = 31.8 bits (63), Expect(2) = 4e-034
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = -3 / +3
Query: 481 MSRSGQPPDLKK 446
MSRSGQPPDLKK
Sbjct: 177 MSRSGQPPDLKK 212
>gb|CF394718.1|CF394718 RTDS2_7_H04.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_7_H04_A021 3', mRNA sequence
Length = 691
Score = 138 bits (297), Expect = 2e-032
Identities = 59/73 (80%), Positives = 67/73 (91%)
Frame = -3 / +3
Query: 448 KYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSVVMIE 269
+YMDKKL IK+NANRVV+GTLRGFDQFMNLV+D TVEVNGN++ +IGMVVIRGNSVVMIE
Sbjct: 177 RYMDKKLNIKLNANRVVVGTLRGFDQFMNLVLDGTVEVNGNERNEIGMVVIRGNSVVMIE 356
Query: 268 ALEPVARSQ*IIV 230
ALEPV RS * I+
Sbjct: 357 ALEPVNRS**FIL 395
>gb|CO199360.1|CO199360 GEO1_20_C09.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_20_C09_A029 5', mRNA sequence
Length = 702
Score = 109 bits (232), Expect(2) = 2e-031
Identities = 47/59 (79%), Positives = 54/59 (91%)
Frame = -3 / +3
Query: 406 RVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSVVMIEALEPVARSQ*IIV 230
+VV+GTLRGFDQFMNLV+D TVEVNGN++ +IGMVVIRGNSVVMIEALEPV RS * I+
Sbjct: 249 QVVVGTLRGFDQFMNLVLDGTVEVNGNERNEIGMVVIRGNSVVMIEALEPVNRS**FIL 425
Score = 46.4 bits (95), Expect(2) = 2e-031
Identities = 18/18 (100%), Positives = 18/18 (100%)
Frame = -3 / +1
Query: 481 MSRSGQPPDLKKYMDKKL 428
MSRSGQPPDLKKYMDKKL
Sbjct: 193 MSRSGQPPDLKKYMDKKL 246
>gb|CX649050.1|CX649050 COLD1_32_D07.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_32_D07_A029 5', mRNA sequence
Length = 691
Score = 109 bits (232), Expect(2) = 2e-031
Identities = 47/59 (79%), Positives = 54/59 (91%)
Frame = -3 / +1
Query: 406 RVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSVVMIEALEPVARSQ*IIV 230
+VV+GTLRGFDQFMNLV+D TVEVNGN++ +IGMVVIRGNSVVMIEALEPV RS * I+
Sbjct: 307 QVVVGTLRGFDQFMNLVLDGTVEVNGNERNEIGMVVIRGNSVVMIEALEPVNRS**FIL 483
Score = 46.4 bits (95), Expect(2) = 2e-031
Identities = 18/18 (100%), Positives = 18/18 (100%)
Frame = -3 / +2
Query: 481 MSRSGQPPDLKKYMDKKL 428
MSRSGQPPDLKKYMDKKL
Sbjct: 251 MSRSGQPPDLKKYMDKKL 304
>gb|BX250905.1|BX250905 BX250905 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP042G02 similar to small nuclear
ribonucleoprotein G, mRNA sequence
Length = 655
Score = 122 bits (262), Expect = 2e-027
Identities = 52/65 (80%), Positives = 60/65 (92%)
Frame = -3 / +3
Query: 424 IKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSVVMIEALEPVARS 245
+K+NANRVV+GTLRGFDQFMNLV+D TVEVNGN++ +IGMVVIRGNSVVMIEALEPV RS
Sbjct: 186 VKLNANRVVVGTLRGFDQFMNLVLDGTVEVNGNERNEIGMVVIRGNSVVMIEALEPVNRS 365
Query: 244 Q*IIV 230
* I+
Sbjct: 366 **FIL 380
>gb|DR053251.1|DR053251 RTCA1_9_H11.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_9_H11_A029 5', mRNA sequence
Length = 704
Score = 122 bits (262), Expect = 2e-027
Identities = 52/65 (80%), Positives = 60/65 (92%)
Frame = -3 / -3
Query: 424 IKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSVVMIEALEPVARS 245
+K+NANRVV+GTLRGFDQFMNLV+D TVEVNGN++ +IGMVVIRGNSVVMIEALEPV RS
Sbjct: 432 VKLNANRVVVGTLRGFDQFMNLVLDGTVEVNGNERNEIGMVVIRGNSVVMIEALEPVNRS 253
Query: 244 Q*IIV 230
* I+
Sbjct: 252 **FIL 238
>gb|AW042759.1|AW042759 ST25A11 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST25A11, mRNA sequence
Length = 548
Score = 118 bits (253), Expect = 3e-026
Identities = 49/72 (68%), Positives = 62/72 (86%)
Frame = -3 / +2
Query: 445 YMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSVVMIEA 266
+ ++ ++K+NANRVV+GTLRGFDQFMNLV+D TVEVNGN++ +IGMVVI+GNSVVMIEA
Sbjct: 161 HFQRQTEVKLNANRVVVGTLRGFDQFMNLVLDGTVEVNGNERNEIGMVVIKGNSVVMIEA 340
Query: 265 LEPVARSQ*IIV 230
L PV S * I+
Sbjct: 341 LXPVNXS**FIL 376
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 303,724,806
Number of Sequences: 355925
Number of extensions: 4360094
Number of successful extensions: 37638
Number of sequences better than 1.0e-020: 32
length of database: 72,425,745
effective HSP length: 51
effective length of database: 54,273,570
effective search space used: 8412403350
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)