TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131584.2.4
(739 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AA556202.1|AA556202 57 Loblolly pine N Pinus taeda cDNA ... 229 2e-059
gb|BX678603.1|BX678603 BX678603 RS Pinus pinaster cDNA clon... 229 2e-059
gb|CV035037.1|CV035037 RTNACL1_13_E11.b1_A029 Roots plus ad... 229 2e-059
gb|CV035118.1|CV035118 RTNACL1_13_E11.g1_A029 Roots plus ad... 229 2e-059
gb|DR016763.1|DR016763 STRS1_12_B09.b1_A034 Shoot tip pitch... 229 2e-059
gb|DR016841.1|DR016841 STRS1_12_B09.g1_A034 Shoot tip pitch... 229 2e-059
gb|BX248841.1|BX248841 BX248841 Pinus pinaster differenciat... 228 3e-059
gb|DR020895.1|DR020895 STRS1_40_A11.b1_A034 Shoot tip pitch... 227 7e-059
gb|AW982038.1|AW982038 PC23B03 Pine TriplEx pollen cone lib... 226 2e-058
gb|BQ633828.1|BQ633828 NXRV061_D02_F NXRV (Nsf Xylem Root w... 216 1e-055
gb|CO169928.1|CO169928 NDL1_10_C06.g1_A029 Needles control ... 128 1e-049
gb|BF778981.1|BF778981 NXSI_091_F11_F NXSI (Nsf Xylem Side ... 158 5e-038
gb|DR743946.1|DR743946 RTCU1_19_E06.b1_A029 Roots plus adde... 115 5e-037
gb|DR744016.1|DR744016 RTCU1_19_E06.g1_A029 Roots plus adde... 115 5e-037
gb|AL749842.1|AL749842 AL749842 AS Pinus pinaster cDNA clon... 144 7e-034
gb|AL749805.1|AL749805 AL749805 AS Pinus pinaster cDNA clon... 73 1e-026
gb|AW290664.1|AW290664 NXNV044G02F Nsf Xylem Normal wood Ve... 117 9e-026
gb|CD027328.1|CD027328 NXNV044G02 Nsf Xylem Normal wood Ver... 117 9e-026
>gb|AA556202.1|AA556202 57 Loblolly pine N Pinus taeda cDNA clone 2N8E, mRNA sequence
Length = 719
Score = 229 bits (494), Expect = 2e-059
Identities = 96/107 (89%), Positives = 100/107 (93%)
Frame = +1 / +1
Query: 184 DENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 363
DE+ K EEEEF+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV+
Sbjct: 100 DEDLPEKSEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVK 279
Query: 364 EMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPN 504
EMWTE+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK* N
Sbjct: 280 EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*LTN 420
Score = 158 bits (340), Expect = 4e-038
Identities = 71/93 (76%), Positives = 76/93 (81%)
Frame = -3 / -1
Query: 497 DHFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKAR 318
+HFGFL T+MTESP RNILLMNLSL TG AFFLPLPV G SVHIS TFS TMLQ S A
Sbjct: 413 NHFGFLRTIMTESPRRNILLMNLSLLTG*AFFLPLPVFGTSVHISLTFSKTMLQCLSNAL 234
Query: 317 TRPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
TRP SFLL QL+RT VLF TLI+RT+RGPVLN
Sbjct: 233 TRPRSFLLFLQLIRTCVLFFTLIMRTERGPVLN 135
>gb|BX678603.1|BX678603 BX678603 RS Pinus pinaster cDNA clone RS11G12, mRNA sequence
Length = 608
Score = 229 bits (494), Expect = 2e-059
Identities = 96/107 (89%), Positives = 100/107 (93%)
Frame = +1 / +2
Query: 184 DENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 363
DE+ K EEEEF+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV+
Sbjct: 116 DEDLPEKSEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVK 295
Query: 364 EMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPN 504
EMWTE+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK* N
Sbjct: 296 EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*LTN 436
Score = 158 bits (340), Expect = 4e-038
Identities = 71/93 (76%), Positives = 76/93 (81%)
Frame = -3 / -3
Query: 497 DHFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKAR 318
+HFGFL T+MTESP RNILLMNLSL TG AFFLPLPV G SVHIS TFS TMLQ S A
Sbjct: 429 NHFGFLRTIMTESPRRNILLMNLSLLTG*AFFLPLPVFGTSVHISLTFSKTMLQCLSNAL 250
Query: 317 TRPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
TRP SFLL QL+RT VLF TLI+RT+RGPVLN
Sbjct: 249 TRPRSFLLFLQLIRTCVLFFTLIMRTERGPVLN 151
>gb|CV035037.1|CV035037 RTNACL1_13_E11.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_13_E11_A029 3', mRNA sequence
Length = 723
Score = 229 bits (494), Expect = 2e-059
Identities = 96/107 (89%), Positives = 100/107 (93%)
Frame = +1 / +3
Query: 184 DENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 363
DE+ K EEEEF+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV+
Sbjct: 99 DEDLPEKSEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVK 278
Query: 364 EMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPN 504
EMWTE+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK* N
Sbjct: 279 EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*LTN 419
Score = 158 bits (340), Expect = 4e-038
Identities = 71/93 (76%), Positives = 76/93 (81%)
Frame = -3 / -3
Query: 497 DHFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKAR 318
+HFGFL T+MTESP RNILLMNLSL TG AFFLPLPV G SVHIS TFS TMLQ S A
Sbjct: 412 NHFGFLRTIMTESPRRNILLMNLSLLTG*AFFLPLPVFGTSVHISLTFSKTMLQCLSNAL 233
Query: 317 TRPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
TRP SFLL QL+RT VLF TLI+RT+RGPVLN
Sbjct: 232 TRPRSFLLFLQLIRTCVLFFTLIMRTERGPVLN 134
>gb|CV035118.1|CV035118 RTNACL1_13_E11.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_13_E11_A029 5', mRNA sequence
Length = 712
Score = 229 bits (494), Expect = 2e-059
Identities = 96/107 (89%), Positives = 100/107 (93%)
Frame = +1 / +2
Query: 184 DENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 363
DE+ K EEEEF+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV+
Sbjct: 68 DEDLPEKSEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVK 247
Query: 364 EMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPN 504
EMWTE+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK* N
Sbjct: 248 EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*LTN 388
Score = 158 bits (340), Expect = 4e-038
Identities = 71/93 (76%), Positives = 76/93 (81%)
Frame = -3 / -2
Query: 497 DHFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKAR 318
+HFGFL T+MTESP RNILLMNLSL TG AFFLPLPV G SVHIS TFS TMLQ S A
Sbjct: 381 NHFGFLRTIMTESPRRNILLMNLSLLTG*AFFLPLPVFGTSVHISLTFSKTMLQCLSNAL 202
Query: 317 TRPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
TRP SFLL QL+RT VLF TLI+RT+RGPVLN
Sbjct: 201 TRPRSFLLFLQLIRTCVLFFTLIMRTERGPVLN 103
>gb|DR016763.1|DR016763 STRS1_12_B09.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_12_B09_A034 3', mRNA sequence
Length = 853
Score = 229 bits (494), Expect = 2e-059
Identities = 96/107 (89%), Positives = 100/107 (93%)
Frame = +1 / -3
Query: 184 DENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 363
DE+ K EEEEF+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV+
Sbjct: 482 DEDLPEKSEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVK 303
Query: 364 EMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPN 504
EMWTE+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK* N
Sbjct: 302 EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*LTN 162
Score = 158 bits (340), Expect = 4e-038
Identities = 71/93 (76%), Positives = 76/93 (81%)
Frame = -3 / +1
Query: 497 DHFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKAR 318
+HFGFL T+MTESP RNILLMNLSL TG AFFLPLPV G SVHIS TFS TMLQ S A
Sbjct: 169 NHFGFLRTIMTESPRRNILLMNLSLLTG*AFFLPLPVFGTSVHISLTFSKTMLQCLSNAL 348
Query: 317 TRPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
TRP SFLL QL+RT VLF TLI+RT+RGPVLN
Sbjct: 349 TRPRSFLLFLQLIRTCVLFFTLIMRTERGPVLN 447
>gb|DR016841.1|DR016841 STRS1_12_B09.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_12_B09_A034 5', mRNA sequence
Length = 913
Score = 229 bits (494), Expect = 2e-059
Identities = 96/107 (89%), Positives = 100/107 (93%)
Frame = +1 / -1
Query: 184 DENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 363
DE+ K EEEEF+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV+
Sbjct: 571 DEDLPEKSEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVK 392
Query: 364 EMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPN 504
EMWTE+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK* N
Sbjct: 391 EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*LTN 251
Score = 158 bits (340), Expect = 4e-038
Identities = 71/93 (76%), Positives = 76/93 (81%)
Frame = -3 / +3
Query: 497 DHFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKAR 318
+HFGFL T+MTESP RNILLMNLSL TG AFFLPLPV G SVHIS TFS TMLQ S A
Sbjct: 258 NHFGFLRTIMTESPRRNILLMNLSLLTG*AFFLPLPVFGTSVHISLTFSKTMLQCLSNAL 437
Query: 317 TRPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
TRP SFLL QL+RT VLF TLI+RT+RGPVLN
Sbjct: 438 TRPRSFLLFLQLIRTCVLFFTLIMRTERGPVLN 536
>gb|BX248841.1|BX248841 BX248841 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP001F10, mRNA sequence
Length = 665
Score = 228 bits (493), Expect = 3e-059
Identities = 96/107 (89%), Positives = 100/107 (93%)
Frame = +1 / -1
Query: 184 DENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 363
DE+ K EEEEF+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV+
Sbjct: 650 DEDCPRKSEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVK 471
Query: 364 EMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPN 504
EMWTE+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK* N
Sbjct: 470 EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*LTN 330
Score = 157 bits (337), Expect = 9e-038
Identities = 71/93 (76%), Positives = 75/93 (80%)
Frame = -3 / +1
Query: 497 DHFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKAR 318
+HFGFL T+MTESP RNILLMNLSL TG AFFLPLPV G SVHIS TFS TMLQ S A
Sbjct: 337 NHFGFLRTIMTESPRRNILLMNLSLLTG*AFFLPLPVFGTSVHISLTFSKTMLQCLSNAL 516
Query: 317 TRPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
TRP SFLL QL+RT VLF TLI+RT RGPVLN
Sbjct: 517 TRPRSFLLFLQLIRTCVLFFTLIMRTXRGPVLN 615
>gb|DR020895.1|DR020895 STRS1_40_A11.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_40_A11_A034 3', mRNA sequence
Length = 811
Score = 227 bits (490), Expect = 7e-059
Identities = 95/107 (88%), Positives = 99/107 (92%)
Frame = +1 / +2
Query: 184 DENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 363
DE+ K EEEEF+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV+
Sbjct: 188 DEDLPEKSEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVK 367
Query: 364 EMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPN 504
EMWTE+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIV RNPK* N
Sbjct: 368 EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVFRNPK*LTN 508
Score = 159 bits (341), Expect = 3e-038
Identities = 71/93 (76%), Positives = 76/93 (81%)
Frame = -3 / -2
Query: 497 DHFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKAR 318
+HFGFL T+MTESP RNILLMNLSL TG AFFLPLPV G SVHIS TFS TMLQ S A
Sbjct: 501 NHFGFLKTIMTESPRRNILLMNLSLLTG*AFFLPLPVFGTSVHISLTFSKTMLQCLSNAL 322
Query: 317 TRPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
TRP SFLL QL+RT VLF TLI+RT+RGPVLN
Sbjct: 321 TRPRSFLLFLQLIRTCVLFFTLIMRTERGPVLN 223
>gb|AW982038.1|AW982038 PC23B03 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC23B03, mRNA sequence
Length = 589
Score = 226 bits (487), Expect = 2e-058
Identities = 95/107 (88%), Positives = 99/107 (92%)
Frame = +1 / +1
Query: 184 DENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 363
DE+ K EEEEF+TGPLSV MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV+
Sbjct: 124 DEDLPEKSEEEEFNTGPLSVPMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVK 303
Query: 364 EMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPN 504
EMWTE+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK* N
Sbjct: 304 EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*LTN 444
Score = 155 bits (333), Expect = 3e-037
Identities = 70/93 (75%), Positives = 75/93 (80%)
Frame = -3 / -3
Query: 497 DHFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKAR 318
+HFGFL T+MTESP RNILLMNLSL TG AFFLPLPV G SVHIS TFS TMLQ S A
Sbjct: 437 NHFGFLRTIMTESPRRNILLMNLSLLTG*AFFLPLPVFGTSVHISLTFSKTMLQCLSNAL 258
Query: 317 TRPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
TRP SFLL QL+RT VLF TLI+ T+RGPVLN
Sbjct: 257 TRPRSFLLFLQLIRTCVLFFTLIMGTERGPVLN 159
>gb|BQ633828.1|BQ633828 NXRV061_D02_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV061_D02 5' similar to Arabidopsis thaliana
sequence At3g62840 small nuclear ribonucleoprotein-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 548
Score = 216 bits (467), Expect = 1e-055
Identities = 91/107 (85%), Positives = 95/107 (88%)
Frame = +1 / +1
Query: 184 DENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 363
DE+ K EEEEF+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV+
Sbjct: 166 DEDLPEKSEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVK 345
Query: 364 EMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPN 504
EMWTE+PKTGKGKKKA PVN RFI FLRGDSVIIVLRNPK* N
Sbjct: 346 EMWTEVPKTGKGKKKAQPVNXXRFIXXXFLRGDSVIIVLRNPK*XTN 486
Score = 147 bits (315), Expect = 1e-034
Identities = 66/92 (71%), Positives = 70/92 (76%)
Frame = -3 / -1
Query: 494 HFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLGISVHISRTFSSTMLQWRSKART 315
HFGFL T+MTESP RN MNL TG AFFLPLPV G SVHIS TFS TMLQ S A T
Sbjct: 476 HFGFLRTIMTESPRRNXXXMNLXXLTG*AFFLPLPVFGTSVHISLTFSKTMLQCLSNALT 297
Query: 314 RPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
RP SFLL QL+RT VLF TLI+RT+RGPVLN
Sbjct: 296 RPRSFLLFLQLIRTCVLFFTLIMRTERGPVLN 201
>gb|CO169928.1|CO169928 NDL1_10_C06.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_10_C06_A029 5', mRNA sequence
Length = 642
Score = 128 bits (274), Expect(3) = 1e-049
Identities = 53/60 (88%), Positives = 56/60 (93%)
Frame = +1 / +2
Query: 184 DENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 363
DE+ K EEEEF+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV+
Sbjct: 170 DEDLPEKSEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVK 349
Score = 88.1 bits (186), Expect(3) = 1e-049
Identities = 38/41 (92%), Positives = 38/41 (92%)
Frame = +1 / +3
Query: 382 PKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPN 504
PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK* N
Sbjct: 372 PKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*LTN 494
Score = 76.7 bits (161), Expect(2) = 3e-030
Identities = 32/39 (82%), Positives = 34/39 (87%)
Frame = -3 / -3
Query: 497 DHFGFLSTMMTESPLRNILLMNLSLFTGRAFFLPLPVLG 381
+HFGFL T+MTESP RNILLMNLSL TG AFFLPLPV G
Sbjct: 487 NHFGFLRTIMTESPRRNILLMNLSLLTG*AFFLPLPVFG 371
Score = 75.3 bits (158), Expect(2) = 3e-030
Identities = 34/47 (72%), Positives = 37/47 (78%)
Frame = -3 / -1
Query: 359 TFSSTMLQWRSKARTRPSSFLLLRQLMRTWVLFLTLIIRTDRGPVLN 219
TFS TMLQ S A TRP SFLL QL+RT VLF TLI+RT+RGPVLN
Sbjct: 345 TFSKTMLQCLSNALTRPRSFLLFLQLIRTCVLFFTLIMRTERGPVLN 205
Score = 21.7 bits (41), Expect(3) = 1e-049
Identities = 6/7 (85%), Positives = 7/7 (100%)
Frame = +1 / +2
Query: 367 MWTEIPK 387
MWTE+PK
Sbjct: 356 MWTEVPK 376
>gb|BF778981.1|BF778981 NXSI_091_F11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_091_F11 5' similar to Arabidopsis thaliana
sequence At3g62840 small nuclear ribonucleoprotein-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 361
Score = 158 bits (339), Expect = 5e-038
Identities = 66/80 (82%), Positives = 69/80 (86%)
Frame = +1 / +2
Query: 184 DENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 363
DE+ K EEEEF+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFD HCNMVLENV+
Sbjct: 122 DEDLPEKSEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDXHCNMVLENVK 301
Query: 364 EMWTEIPKTGKGKKKALPVN 423
EMWT PKTGK KKA VN
Sbjct: 302 EMWTXXPKTGKXXKKAXXVN 361
Score = 100 bits (214), Expect = 8e-021
Identities = 46/64 (71%), Positives = 49/64 (76%)
Frame = -3 / -2
Query: 410 AFFLPLPVLGISVHISRTFSSTMLQWRSKARTRPSSFLLLRQLMRTWVLFLTLIIRTDRG 231
AFF LPV G SVHIS TFS TMLQ S A TRP SFLL QL+RT VLF TLI+RT+RG
Sbjct: 348 AFFXXLPVFGXSVHISLTFSKTMLQXXSNALTRPRSFLLFLQLIRTCVLFFTLIMRTERG 169
Query: 230 PVLN 219
PVLN
Sbjct: 168 PVLN 157
>gb|DR743946.1|DR743946 RTCU1_19_E06.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_19_E06_A029 3', mRNA sequence
Length = 571
Score = 115 bits (246), Expect(2) = 5e-037
Identities = 49/71 (69%), Positives = 56/71 (78%)
Frame = +1 / +3
Query: 175 SMADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLE 354
S DE Q EE E S GPLSVL +V+N+TQVLI+ RNNKKLL RV+AFDRH NMVLE
Sbjct: 48 SELDEAQLRALEEHEISQGPLSVLQQAVRNHTQVLISLRNNKKLLARVKAFDRHSNMVLE 227
Query: 355 NVREMWTEIPK 387
NV+EMWTE+PK
Sbjct: 228 NVKEMWTEMPK 260
Score = 59.3 bits (123), Expect(2) = 5e-037
Identities = 27/46 (58%), Positives = 31/46 (67%)
Frame = +1 / +3
Query: 403 KKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPNQSPCSSYALSLG 540
K PVNKDRFISKMFLRGDSVI++LRN *+ S S + G
Sbjct: 264 KNKKPVNKDRFISKMFLRGDSVILILRNTA*NSGSSISSGNLVKRG 401
>gb|DR744016.1|DR744016 RTCU1_19_E06.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_19_E06_A029 5', mRNA sequence
Length = 536
Score = 115 bits (246), Expect(2) = 5e-037
Identities = 49/71 (69%), Positives = 56/71 (78%)
Frame = +1 / +1
Query: 175 SMADENQAGKKEEEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLE 354
S DE Q EE E S GPLSVL +V+N+TQVLI+ RNNKKLL RV+AFDRH NMVLE
Sbjct: 16 SELDEAQLRALEEHEISQGPLSVLQQAVRNHTQVLISLRNNKKLLARVKAFDRHSNMVLE 195
Query: 355 NVREMWTEIPK 387
NV+EMWTE+PK
Sbjct: 196 NVKEMWTEMPK 228
Score = 59.3 bits (123), Expect(2) = 5e-037
Identities = 27/46 (58%), Positives = 31/46 (67%)
Frame = +1 / +1
Query: 403 KKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPNQSPCSSYALSLG 540
K PVNKDRFISKMFLRGDSVI++LRN *+ S S + G
Sbjct: 232 KNKKPVNKDRFISKMFLRGDSVILILRNTA*NSGSSISSGNLVKRG 369
>gb|AL749842.1|AL749842 AL749842 AS Pinus pinaster cDNA clone AS01G04 similar to SNRP, mRNA
sequence
Length = 616
Score = 144 bits (309), Expect = 7e-034
Identities = 59/71 (83%), Positives = 66/71 (92%)
Frame = +1 / -2
Query: 292 NNKKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVI 471
N KKLLGRV+AF RHC+MVLENV++MW+E+PKTGKG+KKA PVNKDRFISKMFLRGDSVI
Sbjct: 534 NTKKLLGRVKAFYRHCHMVLENVKKMWSEVPKTGKGQKKAQPVNKDRFISKMFLRGDSVI 355
Query: 472 IVLRNPK*SPN 504
IVLRNPK* N
Sbjct: 354 IVLRNPK*LTN 322
>gb|AL749805.1|AL749805 AL749805 AS Pinus pinaster cDNA clone AS01C06 similar to SNRP, mRNA
sequence
Length = 618
Score = 73.5 bits (154), Expect(2) = 1e-026
Identities = 33/40 (82%), Positives = 34/40 (85%)
Frame = +1 / -3
Query: 385 KTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPN 504
K K KKKA PVNKDRFIS+MFLRGDSVIIVLRNPK* N
Sbjct: 442 KQVKAKKKAQPVNKDRFISQMFLRGDSVIIVLRNPK*LTN 323
Score = 66.6 bits (139), Expect(2) = 1e-026
Identities = 24/38 (63%), Positives = 30/38 (78%)
Frame = +1 / -2
Query: 298 KKLLGRVRAFDRHCNMVLENVREMWTEIPKTGKGKKKA 411
K LG ++ HCNMVLENV++MW E+PKTGKGKKK+
Sbjct: 530 KSFLGELKHLIGHCNMVLENVKKMWAEVPKTGKGKKKS 417
>gb|AW290664.1|AW290664 NXNV044G02F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV044G02 5', mRNA sequence
Length = 380
Score = 117 bits (250), Expect = 9e-026
Identities = 49/54 (90%), Positives = 51/54 (94%)
Frame = +1 / +3
Query: 343 MVLENVREMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPN 504
MVLENV+EMWTE+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK* N
Sbjct: 3 MVLENVKEMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*LTN 164
>gb|CD027328.1|CD027328 NXNV044G02 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV044G02 5' similar to Arabidopsis thaliana sequence
At3g62840 small nuclear ribonucleoprotein-like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 380
Score = 117 bits (250), Expect = 9e-026
Identities = 49/54 (90%), Positives = 51/54 (94%)
Frame = +1 / +3
Query: 343 MVLENVREMWTEIPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK*SPN 504
MVLENV+EMWTE+PKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK* N
Sbjct: 3 MVLENVKEMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*LTN 164
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 391,558,201
Number of Sequences: 355925
Number of extensions: 5576915
Number of successful extensions: 45550
Number of sequences better than 1.0e-020: 26
length of database: 72,425,745
effective HSP length: 52
effective length of database: 53,917,645
effective search space used: 10406105485
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)