TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCK30g08.yg.2.1
(164 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB669622.1|CB669622 OSJNEe02D23.f OSJNEe Oryza sativa (j... 122 3e-027
dbj|AK066269.1| Oryza sativa (japonica cultivar-group) cDNA... 122 3e-027
ref|XM_482070.1| Oryza sativa (japonica cultivar-group), mRNA 122 3e-027
dbj|AB096863.1| Oryza sativa (japonica cultivar-group) OsUG... 117 9e-026
gb|AU062996.1|AU062996 AU062996 Rice callus Oryza sativa (j... 112 2e-024
dbj|AK121426.1| Oryza sativa (japonica cultivar-group) cDNA... 107 7e-023
ref|XM_450508.1| Oryza sativa (japonica cultivar-group), mRNA 107 7e-023
ref|XM_450509.1| Oryza sativa (japonica cultivar-group), mRNA 107 7e-023
>gb|CB669622.1|CB669622 OSJNEe02D23.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe02D23 5', mRNA sequence
Length = 884
Score = 122 bits (261), Expect = 3e-027
Identities = 46/48 (95%), Positives = 48/48 (100%)
Frame = +1 / +3
Query: 1 GSPKNSPCTEKFPLTPNNPYGKTKLVVEDICRDIYRSDPEWKIILLRY 144
GSPKNSPCTE+FPLTPNNPYGKTKLVVEDICRDIYR+DPEWKIILLRY
Sbjct: 33 GSPKNSPCTEEFPLTPNNPYGKTKLVVEDICRDIYRTDPEWKIILLRY 176
>dbj|AK066269.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059D16, full
insert sequence
Length = 1878
Score = 122 bits (261), Expect = 3e-027
Identities = 46/48 (95%), Positives = 48/48 (100%)
Frame = +1 / +2
Query: 1 GSPKNSPCTEKFPLTPNNPYGKTKLVVEDICRDIYRSDPEWKIILLRY 144
GSPKNSPCTE+FPLTPNNPYGKTKLVVEDICRDIYR+DPEWKIILLRY
Sbjct: 677 GSPKNSPCTEEFPLTPNNPYGKTKLVVEDICRDIYRTDPEWKIILLRY 820
>ref|XM_482070.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1878
Score = 122 bits (261), Expect = 3e-027
Identities = 46/48 (95%), Positives = 48/48 (100%)
Frame = +1 / +2
Query: 1 GSPKNSPCTEKFPLTPNNPYGKTKLVVEDICRDIYRSDPEWKIILLRY 144
GSPKNSPCTE+FPLTPNNPYGKTKLVVEDICRDIYR+DPEWKIILLRY
Sbjct: 677 GSPKNSPCTEEFPLTPNNPYGKTKLVVEDICRDIYRTDPEWKIILLRY 820
>dbj|AB096863.1| Oryza sativa (japonica cultivar-group) OsUGE-2 mRNA for putative
UDP-glucose 4-epimerase, complete cds
Length = 1736
Score = 117 bits (250), Expect = 9e-026
Identities = 45/48 (93%), Positives = 47/48 (97%)
Frame = +1 / +1
Query: 1 GSPKNSPCTEKFPLTPNNPYGKTKLVVEDICRDIYRSDPEWKIILLRY 144
GSPKNSP TE+FPLTPNNPYGKTKLVVEDICRDIYR+DPEWKIILLRY
Sbjct: 652 GSPKNSPWTEEFPLTPNNPYGKTKLVVEDICRDIYRTDPEWKIILLRY 795
>gb|AU062996.1|AU062996 AU062996 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C52249_2A, mRNA sequence
Length = 312
Score = 112 bits (240), Expect = 2e-024
Identities = 43/47 (91%), Positives = 45/47 (95%)
Frame = +1 / +2
Query: 4 SPKNSPCTEKFPLTPNNPYGKTKLVVEDICRDIYRSDPEWKIILLRY 144
S NSPCTE+FPLTPNNPYGKTKLVVEDICRDIYR+DPEWKIILLRY
Sbjct: 20 SXXNSPCTEEFPLTPNNPYGKTKLVVEDICRDIYRTDPEWKIILLRY 160
>dbj|AK121426.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023135L03, full
insert sequence
Length = 1419
Score = 107 bits (229), Expect = 7e-023
Identities = 39/48 (81%), Positives = 44/48 (91%)
Frame = +1 / +2
Query: 1 GSPKNSPCTEKFPLTPNNPYGKTKLVVEDICRDIYRSDPEWKIILLRY 144
GSPKNSPCTE+FPLTP+NPYG+TKL+ E+ICRDIY SD EW IILLRY
Sbjct: 530 GSPKNSPCTEEFPLTPHNPYGRTKLIAEEICRDIYHSDSEWSIILLRY 673
>ref|XM_450508.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1419
Score = 107 bits (229), Expect = 7e-023
Identities = 39/48 (81%), Positives = 44/48 (91%)
Frame = +1 / +2
Query: 1 GSPKNSPCTEKFPLTPNNPYGKTKLVVEDICRDIYRSDPEWKIILLRY 144
GSPKNSPCTE+FPLTP+NPYG+TKL+ E+ICRDIY SD EW IILLRY
Sbjct: 530 GSPKNSPCTEEFPLTPHNPYGRTKLIAEEICRDIYHSDSEWSIILLRY 673
>ref|XM_450509.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1110
Score = 107 bits (229), Expect = 7e-023
Identities = 39/48 (81%), Positives = 44/48 (91%)
Frame = +1 / +1
Query: 1 GSPKNSPCTEKFPLTPNNPYGKTKLVVEDICRDIYRSDPEWKIILLRY 144
GSPKNSPCTE+FPLTP+NPYG+TKL+ E+ICRDIY SD EW IILLRY
Sbjct: 445 GSPKNSPCTEEFPLTPHNPYGRTKLIAEEICRDIYHSDSEWSIILLRY 588
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.317 0.142 0.459
Matrix: BLOSUM62
Number of Hits to DB: 1,157,084,486
Number of Sequences: 438736
Number of extensions: 11642072
Number of successful extensions: 142616
Number of sequences better than 1.0e-020: 10
length of database: 933,473,305
effective HSP length: 45
effective length of database: 913,730,185
effective search space used: 8223571665
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.6 bits)