TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3024030.2.1
(412 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK070637.1| Oryza sativa (japonica cultivar-group) cDNA... 142 2e-032
ref|NT_079914.2| Oryza sativa (japonica cultivar-group) 129 2e-029
gb|AC092263.7| Oryza sativa chromosome 3 BAC OSJNBa0033P04 ... 129 2e-029
gb|AACV01008302.1| Oryza sativa (japonica cultivar-group) c... 129 2e-029
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 129 1e-028
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 129 1e-028
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 129 1e-028
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 129 1e-028
ref|XM_470502.1| Oryza sativa (japonica cultivar-group), mRNA 111 4e-023
>dbj|AK070637.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056J01, full
insert sequence
Length = 2649
Score = 142 bits (304), Expect = 2e-032
Identities = 58/95 (61%), Positives = 66/95 (69%)
Frame = +2 / -3
Query: 119 CTLDHHDLQFPSLLAFFLTXXXXXXXXXXXYPSAISSRTRRFTHFAFGEDEMSYEPRTAW 298
C + Q PS L FLT YP+AI+++T RFTHFAF EDEMSYEP TAW
Sbjct: 2362 CGVQLQQHQLPSNLMCFLTFRRSNT*RTTRYPTAITNKTSRFTHFAFAEDEMSYEPPTAW 2183
Query: 299 TPGMVLICPTANDVPTYSFSTKPCTAYVWNEMKDS 403
TPG+VLI PTANDVPTYSFS+KP TAY WNE D+
Sbjct: 2182 TPGIVLIAPTANDVPTYSFSSKPSTAYTWNETYDN 2078
Score = 113 bits (241), Expect(2) = 4e-025
Identities = 46/54 (85%), Positives = 50/54 (92%)
Frame = -2 / +3
Query: 402 LSFISFHTYAVQGLVENEYVGTSFAVGQIRTIPGVQAVRGSYDISSSPNAKWVN 241
LS++SFH YAV+GL+ENEYVGTSFAVG IRTIPGVQAV GSYDISSS NAKWVN
Sbjct: 2079 LSYVSFHVYAVEGLLENEYVGTSFAVGAIRTIPGVQAVGGSYDISSSANAKWVN 2240
Score = 24.4 bits (47), Expect(2) = 4e-025
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2 / +3
Query: 177 DVRKNARRLGNWRSW 133
+VRK+ R LG+W W
Sbjct: 2304 NVRKHMRLLGSWCCW 2348
>ref|NT_079914.2| Oryza sativa (japonica cultivar-group)
Length = 1404373
Score = 129 bits (277), Expect(2) = 2e-029
Identities = 53/85 (62%), Positives = 60/85 (70%)
Frame = +2 / +1
Query: 119 CTLDHHDLQFPSLLAFFLTXXXXXXXXXXXYPSAISSRTRRFTHFAFGEDEMSYEPRTAW 298
C + Q PS L FLT YP+AI+++T RFTHFAF EDEMSYEP TAW
Sbjct: 1271509 CGVQLQQHQLPSNLMCFLTFRRSNT*RTTRYPTAITNKTSRFTHFAFAEDEMSYEPPTAW 1271688
Query: 299 TPGMVLICPTANDVPTYSFSTKPCT 373
TPG+VLI PTANDVPTYSFS+KPCT
Sbjct: 1271689 TPGIVLIAPTANDVPTYSFSSKPCT 1271763
Score = 95.0 bits (201), Expect(3) = 4e-022
Identities = 40/44 (90%), Positives = 41/44 (93%)
Frame = -2 / -3
Query: 372 VQGLVENEYVGTSFAVGQIRTIPGVQAVRGSYDISSSPNAKWVN 241
VQGL+ENEYVGTSFAVG IRTIPGVQAV GSYDISSS NAKWVN
Sbjct: 1271762 VQGLLENEYVGTSFAVGAIRTIPGVQAVGGSYDISSSANAKWVN 1271631
Score = 25.4 bits (49), Expect(3) = 4e-022
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -2 / -2
Query: 402 LSFISFHTYAVQ 367
LS++SFH YAV+
Sbjct: 1271907 LSYVSFHVYAVE 1271872
Score = 24.4 bits (47), Expect(3) = 4e-022
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2 / -3
Query: 177 DVRKNARRLGNWRSW 133
+VRK+ R LG+W W
Sbjct: 1271567 NVRKHMRLLGSWCCW 1271523
Score = 22.1 bits (42), Expect(2) = 2e-029
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +2 / +2
Query: 371 TAYVWNEMKDS 403
TAY WNE D+
Sbjct: 1271876 TAYTWNETYDN 1271908
>gb|AC092263.7| Oryza sativa chromosome 3 BAC OSJNBa0033P04 genomic sequence, complete
sequence
Length = 164179
Score = 129 bits (277), Expect(2) = 2e-029
Identities = 53/85 (62%), Positives = 60/85 (70%)
Frame = +2 / +1
Query: 119 CTLDHHDLQFPSLLAFFLTXXXXXXXXXXXYPSAISSRTRRFTHFAFGEDEMSYEPRTAW 298
C + Q PS L FLT YP+AI+++T RFTHFAF EDEMSYEP TAW
Sbjct: 31315 CGVQLQQHQLPSNLMCFLTFRRSNT*RTTRYPTAITNKTSRFTHFAFAEDEMSYEPPTAW 31494
Query: 299 TPGMVLICPTANDVPTYSFSTKPCT 373
TPG+VLI PTANDVPTYSFS+KPCT
Sbjct: 31495 TPGIVLIAPTANDVPTYSFSSKPCT 31569
Score = 95.0 bits (201), Expect(3) = 4e-022
Identities = 40/44 (90%), Positives = 41/44 (93%)
Frame = -2 / -3
Query: 372 VQGLVENEYVGTSFAVGQIRTIPGVQAVRGSYDISSSPNAKWVN 241
VQGL+ENEYVGTSFAVG IRTIPGVQAV GSYDISSS NAKWVN
Sbjct: 31568 VQGLLENEYVGTSFAVGAIRTIPGVQAVGGSYDISSSANAKWVN 31437
Score = 25.4 bits (49), Expect(3) = 4e-022
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -2 / -2
Query: 402 LSFISFHTYAVQ 367
LS++SFH YAV+
Sbjct: 31713 LSYVSFHVYAVE 31678
Score = 24.4 bits (47), Expect(3) = 4e-022
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2 / -3
Query: 177 DVRKNARRLGNWRSW 133
+VRK+ R LG+W W
Sbjct: 31373 NVRKHMRLLGSWCCW 31329
Score = 22.1 bits (42), Expect(2) = 2e-029
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +2 / +2
Query: 371 TAYVWNEMKDS 403
TAY WNE D+
Sbjct: 31682 TAYTWNETYDN 31714
>gb|AACV01008302.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg008302,
whole genome shotgun sequence
Length = 16653
Score = 129 bits (277), Expect(2) = 2e-029
Identities = 53/85 (62%), Positives = 60/85 (70%)
Frame = +2 / -1
Query: 119 CTLDHHDLQFPSLLAFFLTXXXXXXXXXXXYPSAISSRTRRFTHFAFGEDEMSYEPRTAW 298
C + Q PS L FLT YP+AI+++T RFTHFAF EDEMSYEP TAW
Sbjct: 891 CGVQLQQHQLPSNLMCFLTFRRSNT*RTTRYPTAITNKTSRFTHFAFAEDEMSYEPPTAW 712
Query: 299 TPGMVLICPTANDVPTYSFSTKPCT 373
TPG+VLI PTANDVPTYSFS+KPCT
Sbjct: 711 TPGIVLIAPTANDVPTYSFSSKPCT 637
Score = 95.0 bits (201), Expect(3) = 5e-022
Identities = 40/44 (90%), Positives = 41/44 (93%)
Frame = -2 / +2
Query: 372 VQGLVENEYVGTSFAVGQIRTIPGVQAVRGSYDISSSPNAKWVN 241
VQGL+ENEYVGTSFAVG IRTIPGVQAV GSYDISSS NAKWVN
Sbjct: 638 VQGLLENEYVGTSFAVGAIRTIPGVQAVGGSYDISSSANAKWVN 769
Score = 25.4 bits (49), Expect(3) = 5e-022
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -2 / +1
Query: 402 LSFISFHTYAVQ 367
LS++SFH YAV+
Sbjct: 493 LSYVSFHVYAVE 528
Score = 24.4 bits (47), Expect(3) = 5e-022
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2 / +2
Query: 177 DVRKNARRLGNWRSW 133
+VRK+ R LG+W W
Sbjct: 833 NVRKHMRLLGSWCCW 877
Score = 22.1 bits (42), Expect(2) = 2e-029
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +2 / -2
Query: 371 TAYVWNEMKDS 403
TAY WNE D+
Sbjct: 524 TAYTWNETYDN 492
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 129 bits (277), Expect = 1e-028
Identities = 53/85 (62%), Positives = 60/85 (70%)
Frame = +2 / +3
Query: 119 CTLDHHDLQFPSLLAFFLTXXXXXXXXXXXYPSAISSRTRRFTHFAFGEDEMSYEPRTAW 298
C + Q PS L FLT YP+AI+++T RFTHFAF EDEMSYEP TAW
Sbjct: 9713838 CGVQLQQHQLPSNLMCFLTFRRSNT*RTTRYPTAITNKTSRFTHFAFAEDEMSYEPPTAW 9714017
Query: 299 TPGMVLICPTANDVPTYSFSTKPCT 373
TPG+VLI PTANDVPTYSFS+KPCT
Sbjct: 9714018 TPGIVLIAPTANDVPTYSFSSKPCT 9714092
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 129 bits (277), Expect = 1e-028
Identities = 53/85 (62%), Positives = 60/85 (70%)
Frame = +2 / +3
Query: 119 CTLDHHDLQFPSLLAFFLTXXXXXXXXXXXYPSAISSRTRRFTHFAFGEDEMSYEPRTAW 298
C + Q PS L FLT YP+AI+++T RFTHFAF EDEMSYEP TAW
Sbjct: 36980001 CGVQLQQHQLPSNLMCFLTFRRSNT*RTTRYPTAITNKTSRFTHFAFAEDEMSYEPPTAW 36980180
Query: 299 TPGMVLICPTANDVPTYSFSTKPCT 373
TPG+VLI PTANDVPTYSFS+KPCT
Sbjct: 36980181 TPGIVLIAPTANDVPTYSFSSKPCT 36980255
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 129 bits (277), Expect = 1e-028
Identities = 53/85 (62%), Positives = 60/85 (70%)
Frame = +2 / +1
Query: 119 CTLDHHDLQFPSLLAFFLTXXXXXXXXXXXYPSAISSRTRRFTHFAFGEDEMSYEPRTAW 298
C + Q PS L FLT YP+AI+++T RFTHFAF EDEMSYEP TAW
Sbjct: 36059878 CGVQLQQHQLPSNLMCFLTFRRSNT*RTTRYPTAITNKTSRFTHFAFAEDEMSYEPPTAW 36060057
Query: 299 TPGMVLICPTANDVPTYSFSTKPCT 373
TPG+VLI PTANDVPTYSFS+KPCT
Sbjct: 36060058 TPGIVLIAPTANDVPTYSFSSKPCT 36060132
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 129 bits (277), Expect = 1e-028
Identities = 53/85 (62%), Positives = 60/85 (70%)
Frame = +2 / +2
Query: 119 CTLDHHDLQFPSLLAFFLTXXXXXXXXXXXYPSAISSRTRRFTHFAFGEDEMSYEPRTAW 298
C + Q PS L FLT YP+AI+++T RFTHFAF EDEMSYEP TAW
Sbjct: 35969804 CGVQLQQHQLPSNLMCFLTFRRSNT*RTTRYPTAITNKTSRFTHFAFAEDEMSYEPPTAW 35969983
Query: 299 TPGMVLICPTANDVPTYSFSTKPCT 373
TPG+VLI PTANDVPTYSFS+KPCT
Sbjct: 35969984 TPGIVLIAPTANDVPTYSFSSKPCT 35970058
>ref|XM_470502.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2064
Score = 111 bits (237), Expect = 4e-023
Identities = 42/53 (79%), Positives = 46/53 (86%)
Frame = +2 / -2
Query: 245 THFAFGEDEMSYEPRTAWTPGMVLICPTANDVPTYSFSTKPCTAYVWNEMKDS 403
+HFAF EDEMSYEP TAWTPG+VLI PTANDVPTYSFS+KP TAY WNE D+
Sbjct: 2009 SHFAFAEDEMSYEPPTAWTPGIVLIAPTANDVPTYSFSSKPSTAYTWNETYDN 1851
Score = 108 bits (231), Expect = 3e-022
Identities = 44/52 (84%), Positives = 48/52 (92%)
Frame = -2 / +1
Query: 402 LSFISFHTYAVQGLVENEYVGTSFAVGQIRTIPGVQAVRGSYDISSSPNAKW 247
LS++SFH YAV+GL+ENEYVGTSFAVG IRTIPGVQAV GSYDISSS NAKW
Sbjct: 1852 LSYVSFHVYAVEGLLENEYVGTSFAVGAIRTIPGVQAVGGSYDISSSANAKW 2007
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 2,913,650,536
Number of Sequences: 438736
Number of extensions: 40080086
Number of successful extensions: 386237
Number of sequences better than 1.0e-020: 13
length of database: 933,473,305
effective HSP length: 57
effective length of database: 908,465,353
effective search space used: 71768762887
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)