TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.006B01F020311.3.1
(609 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI308280.1|BI308280 EST529690 GPOD Medicago truncatula c... 162 3e-057
gb|CB891685.1|CB891685 EST648654 KV3 Medicago truncatula cD... 152 2e-054
gb|BQ148260.1|BQ148260 NF065D12FL1F1102 Developing flower M... 162 6e-053
gb|BF646871.1|BF646871 NF068B09EC1F1076 Elicited cell cultu... 162 3e-052
gb|AJ498016.1|AJ498016 AJ498016 MTPOSE Medicago truncatula ... 162 8e-046
gb|AW685281.1|AW685281 NF027B07NR1F1000 Nodulated root Medi... 184 1e-045
gb|AW689696.1|AW689696 NF023D01ST1F1000 Developing stem Med... 156 2e-044
gb|AW695082.1|AW695082 NF091D12ST1F1101 Developing stem Med... 162 2e-042
gb|BG450081.1|BG450081 NF011E06DT1F1051 Drought Medicago tr... 155 2e-041
gb|CX535093.1|CX535093 s13dNF36H09MJ080_388365 Methyl Jasmo... 106 9e-041
gb|CX535243.1|CX535243 s13dNF37C05MJ038_388663 Methyl Jasmo... 162 3e-040
gb|CX542040.1|CX542040 s13dNF89D01GS014_467388 Germinating ... 100 5e-039
gb|AW693828.2|AW693828 NF069E04ST1F1034 Developing stem Med... 148 1e-038
gb|CF068981.1|CF068981 EST669702 MTUS Medicago truncatula c... 158 6e-038
gb|AC141107.5| Medicago truncatula clone mth2-34a12, comple... 116 6e-037
gb|CB892038.1|CB892038 EST649007 KV3 Medicago truncatula cD... 92 2e-036
gb|CX523840.1|CX523840 s13dNF05F06AT059_440078 Aphid-Infect... 139 5e-032
gb|BF647863.1|BF647863 NF038B02EC1F1016 Elicited cell cultu... 94 8e-030
gb|AC161401.2| Medicago truncatula chromosome 7 clone mte1-... 50 2e-028
>gb|BI308280.1|BI308280 EST529690 GPOD Medicago truncatula cDNA clone pGPOD-2L19 5' end,
mRNA sequence
Length = 808
Score = 162 bits (348), Expect(2) = 3e-057
Identities = 63/91 (69%), Positives = 75/91 (82%)
Frame = +1 / +2
Query: 142 TLKVDASPKLARKIPDTFLGVFFEEMGHGGAGGIWAELVSNRGFEAGGPNTPSNIDPWLI 321
TL VDAS R+IP+T G+FFEE+ H GAGG+WAELVSNRGFEAGGPN PSNIDPW I
Sbjct: 284 TLVVDASQASGRRIPETLFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNIPSNIDPWSI 463
Query: 322 VGDDSSVYVETDRSSCFSRNIVALRMEVLCN 414
+G+ + + VETDR+SCF RN VALR+EVLC+
Sbjct: 464 IGNATYINVETDRTSCFERNKVALRLEVLCD 556
Score = 93.0 bits (197), Expect(2) = 7e-026
Identities = 47/88 (53%), Positives = 51/88 (57%)
Frame = -2 / -2
Query: 404 TSILRATMFRLKHDXXXXXXXXXXXXXXXSQGSMFDGVLGPPASKPLLLTSSAHIPPAPP 225
TS AT+ R K D QGS+FDG+LGPPAS PLLLTSSAH PPAP
Sbjct: 546 TSNRSATLLRSKQDVRSVSTLIYVAFPIIDQGSIFDGMLGPPASNPLLLTSSAHNPPAPA 367
Query: 224 WPISSKNTPRNVSGIFRASFGEASTLRV 141
ISSKN P+ VSGI EAST V
Sbjct: 366 *LISSKNIPKRVSGIRLPDA*EASTTSV 283
Score = 81.6 bits (172), Expect(2) = 3e-057
Identities = 32/53 (60%), Positives = 38/53 (71%)
Frame = +1 / +2
Query: 418 CPAGGVGIYNPGFWGMNIEDGKTYHLVMYVKSPKTTCLTVSLTSSDGLQNLAS 576
CP GVG+YNPGFWGMNIE GK Y +V Y +S L VSLT S+G+ +LAS
Sbjct: 563 CPTDGVGVYNPGFWGMNIEQGKKYKVVFYARSTGPLNLKVSLTGSNGVGSLAS 721
Score = 45.0 bits (92), Expect(2) = 7e-026
Identities = 17/24 (70%), Positives = 18/24 (75%)
Frame = -2 / -2
Query: 488 YVFPSSMFMPQNPGL*MPTPPAGQ 417
Y FP S+FMPQ PGL* PTP GQ
Sbjct: 633 YFFPCSIFMPQKPGL*TPTPSVGQ 562
>gb|CB891685.1|CB891685 EST648654 KV3 Medicago truncatula cDNA clone KV3-51D17, mRNA
sequence
Length = 469
Score = 152 bits (327), Expect(2) = 2e-054
Identities = 57/80 (71%), Positives = 69/80 (86%)
Frame = +1 / -2
Query: 175 RKIPDTFLGVFFEEMGHGGAGGIWAELVSNRGFEAGGPNTPSNIDPWLIVGDDSSVYVET 354
R+IP+T G+FFEE+ H GAGG+WAELVSNRGFEAGGPN PSNIDPW I+G+ + + VET
Sbjct: 456 RRIPETLFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNIPSNIDPWSIIGNATYINVET 277
Query: 355 DRSSCFSRNIVALRMEVLCN 414
DR+SCF RN VALR+EVLC+
Sbjct: 276 DRTSCFERNKVALRLEVLCD 217
Score = 89.4 bits (189), Expect(2) = 9e-025
Identities = 42/75 (56%), Positives = 46/75 (61%)
Frame = -2 / +2
Query: 404 TSILRATMFRLKHDXXXXXXXXXXXXXXXSQGSMFDGVLGPPASKPLLLTSSAHIPPAPP 225
TS AT+ R K D QGS+FDG+LGPPAS PLLLTSSAH PPAP
Sbjct: 227 TSNRSATLLRSKQDVRSVSTLIYVAFPIIDQGSIFDGMLGPPASNPLLLTSSAHNPPAPA 406
Query: 224 WPISSKNTPRNVSGI 180
ISSKN P+ VSGI
Sbjct: 407 *LISSKNIPKRVSGI 451
Score = 81.6 bits (172), Expect(2) = 2e-054
Identities = 32/53 (60%), Positives = 38/53 (71%)
Frame = +1 / -2
Query: 418 CPAGGVGIYNPGFWGMNIEDGKTYHLVMYVKSPKTTCLTVSLTSSDGLQNLAS 576
CP GVG+YNPGFWGMNIE GK Y +V Y +S L VSLT S+G+ +LAS
Sbjct: 210 CPTDGVGVYNPGFWGMNIEQGKKYKVVFYARSTGPLNLKVSLTGSNGVGSLAS 52
Score = 45.0 bits (92), Expect(2) = 9e-025
Identities = 17/24 (70%), Positives = 18/24 (75%)
Frame = -2 / +2
Query: 488 YVFPSSMFMPQNPGL*MPTPPAGQ 417
Y FP S+FMPQ PGL* PTP GQ
Sbjct: 140 YFFPCSIFMPQKPGL*TPTPSVGQ 211
>gb|BQ148260.1|BQ148260 NF065D12FL1F1102 Developing flower Medicago truncatula cDNA clone
NF065D12FL 5', mRNA sequence
Length = 664
Score = 162 bits (348), Expect(2) = 6e-053
Identities = 63/91 (69%), Positives = 75/91 (82%)
Frame = +1 / +2
Query: 142 TLKVDASPKLARKIPDTFLGVFFEEMGHGGAGGIWAELVSNRGFEAGGPNTPSNIDPWLI 321
TL VDAS R+IP+T G+FFEE+ H GAGG+WAELVSNRGFEAGGPN PSNIDPW I
Sbjct: 263 TLVVDASQASGRRIPETLFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNIPSNIDPWSI 442
Query: 322 VGDDSSVYVETDRSSCFSRNIVALRMEVLCN 414
+G+ + + VETDR+SCF RN VALR+EVLC+
Sbjct: 443 IGNATYINVETDRTSCFERNKVALRLEVLCD 535
Score = 93.0 bits (197), Expect(2) = 7e-026
Identities = 47/88 (53%), Positives = 51/88 (57%)
Frame = -2 / -2
Query: 404 TSILRATMFRLKHDXXXXXXXXXXXXXXXSQGSMFDGVLGPPASKPLLLTSSAHIPPAPP 225
TS AT+ R K D QGS+FDG+LGPPAS PLLLTSSAH PPAP
Sbjct: 525 TSNRSATLLRSKQDVRSVSTLIYVAFPIIDQGSIFDGMLGPPASNPLLLTSSAHNPPAPA 346
Query: 224 WPISSKNTPRNVSGIFRASFGEASTLRV 141
ISSKN P+ VSGI EAST V
Sbjct: 345 *LISSKNIPKRVSGIRLPDA*EASTTSV 262
Score = 66.9 bits (140), Expect(2) = 6e-053
Identities = 25/41 (60%), Positives = 28/41 (68%)
Frame = +1 / +2
Query: 418 CPAGGVGIYNPGFWGMNIEDGKTYHLVMYVKSPKTTCLTVS 540
CP GVG+YNPGFWGMNIE GK Y +V Y +S L VS
Sbjct: 542 CPTDGVGVYNPGFWGMNIEQGKKYKVVFYARSTGPLNLKVS 664
Score = 45.0 bits (92), Expect(2) = 7e-026
Identities = 17/24 (70%), Positives = 18/24 (75%)
Frame = -2 / -2
Query: 488 YVFPSSMFMPQNPGL*MPTPPAGQ 417
Y FP S+FMPQ PGL* PTP GQ
Sbjct: 612 YFFPCSIFMPQKPGL*TPTPSVGQ 541
>gb|BF646871.1|BF646871 NF068B09EC1F1076 Elicited cell culture Medicago truncatula cDNA
clone NF068B09EC 5', mRNA sequence
Length = 652
Score = 162 bits (348), Expect(2) = 3e-052
Identities = 63/91 (69%), Positives = 75/91 (82%)
Frame = +1 / +3
Query: 142 TLKVDASPKLARKIPDTFLGVFFEEMGHGGAGGIWAELVSNRGFEAGGPNTPSNIDPWLI 321
TL VDAS R+IP+T G+FFEE+ H GAGG+WAELVSNRGFEAGGPN PSNIDPW I
Sbjct: 255 TLVVDASQASGRRIPETLFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNIPSNIDPWSI 434
Query: 322 VGDDSSVYVETDRSSCFSRNIVALRMEVLCN 414
+G+ + + VETDR+SCF RN VALR+EVLC+
Sbjct: 435 IGNATYINVETDRTSCFERNKVALRLEVLCD 527
Score = 93.0 bits (197), Expect(2) = 1e-025
Identities = 47/88 (53%), Positives = 51/88 (57%)
Frame = -2 / -1
Query: 404 TSILRATMFRLKHDXXXXXXXXXXXXXXXSQGSMFDGVLGPPASKPLLLTSSAHIPPAPP 225
TS AT+ R K D QGS+FDG+LGPPAS PLLLTSSAH PPAP
Sbjct: 517 TSNRSATLLRSKQDVRSVSTLIYVAFPIIDQGSIFDGMLGPPASNPLLLTSSAHNPPAPA 338
Query: 224 WPISSKNTPRNVSGIFRASFGEASTLRV 141
ISSKN P+ VSGI EAST V
Sbjct: 337 *LISSKNIPKRVSGIRLPDA*EASTTSV 254
Score = 64.7 bits (135), Expect(2) = 3e-052
Identities = 22/32 (68%), Positives = 24/32 (75%)
Frame = +1 / +3
Query: 418 CPAGGVGIYNPGFWGMNIEDGKTYHLVMYVKS 513
CP GVG+YNPGFWGMNIE GK Y V Y +S
Sbjct: 534 CPTDGVGVYNPGFWGMNIEQGKKYKXVFYARS 629
Score = 44.5 bits (91), Expect(2) = 1e-025
Identities = 17/24 (70%), Positives = 18/24 (75%)
Frame = -2 / -1
Query: 488 YVFPSSMFMPQNPGL*MPTPPAGQ 417
Y FP S+FMPQ PGL* PTP GQ
Sbjct: 604 YFFPCSIFMPQXPGL*TPTPSVGQ 533
>gb|AJ498016.1|AJ498016 AJ498016 MTPOSE Medicago truncatula cDNA clone mt--acc955200a10,
mRNA sequence
Length = 565
Score = 162 bits (348), Expect(2) = 8e-046
Identities = 63/91 (69%), Positives = 75/91 (82%)
Frame = +1 / +1
Query: 142 TLKVDASPKLARKIPDTFLGVFFEEMGHGGAGGIWAELVSNRGFEAGGPNTPSNIDPWLI 321
TL VDAS R+IP+T G+FFEE+ H GAGG+WAELVSNRGFEAGGPN PSNIDPW I
Sbjct: 136 TLVVDASQASGRRIPETLFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNIPSNIDPWSI 315
Query: 322 VGDDSSVYVETDRSSCFSRNIVALRMEVLCN 414
+G+ + + VETDR+SCF RN VALR+EVLC+
Sbjct: 316 IGNATYINVETDRTSCFERNKVALRLEVLCD 408
Score = 93.0 bits (197), Expect(2) = 2e-022
Identities = 47/88 (53%), Positives = 51/88 (57%)
Frame = -2 / -3
Query: 404 TSILRATMFRLKHDXXXXXXXXXXXXXXXSQGSMFDGVLGPPASKPLLLTSSAHIPPAPP 225
TS AT+ R K D QGS+FDG+LGPPAS PLLLTSSAH PPAP
Sbjct: 398 TSNRSATLLRSKQDVRSVSTLIYVAFPIIDQGSIFDGMLGPPASNPLLLTSSAHNPPAPA 219
Query: 224 WPISSKNTPRNVSGIFRASFGEASTLRV 141
ISSKN P+ VSGI EAST V
Sbjct: 218 *LISSKNIPKRVSGIRLPDA*EASTTSV 135
Score = 43.1 bits (88), Expect(2) = 8e-046
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +1 / +1
Query: 418 CPAGGVGIYNPGFWGM 465
CP GVG+YNPGFWGM
Sbjct: 415 CPTDGVGVYNPGFWGM 462
Score = 33.5 bits (67), Expect(2) = 2e-022
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = -2 / -3
Query: 473 SMFMPQNPGL*MPTPPAGQ 417
S+ MPQ PGL* PTP GQ
Sbjct: 470 SLTMPQKPGL*TPTPSVGQ 414
>gb|AW685281.1|AW685281 NF027B07NR1F1000 Nodulated root Medicago truncatula cDNA clone
NF027B07NR 5', mRNA sequence
Length = 651
Score = 184 bits (396), Expect = 1e-045
Identities = 72/136 (52%), Positives = 97/136 (71%)
Frame = +1 / +2
Query: 175 RKIPDTFLGVFFEEMGHGGAGGIWAELVSNRGFEAGGPNTPSNIDPWLIVGDDSSVYVET 354
R +P+T G+F+EE+ H G+GGIWA+LV+N GFEA G TPSNI PW I+G +SSV ++T
Sbjct: 149 RPMPNTLFGIFYEEINHAGSGGIWAQLVNNSGFEAAGTRTPSNIFPWTIIGTESSVKLQT 328
Query: 355 DRSSCFSRNIVALRMEVLCNDCPAGGVGIYNPGFWGMNIEDGKTYHLVMYVKSPKTTCLT 534
+ SSCF RN VALRM+VLC+ CP GVG+ NPGFWGMNI GK Y +V + +S + +
Sbjct: 329 ELSSCFERNKVALRMDVLCDKCPPDGVGVSNPGFWGMNIVQGKKYKVVFFYRSLGSLDMR 508
Query: 535 VSLTSSDGLQNLASGY 582
V+ + + LAS +
Sbjct: 509 VAFRDAIXGRILASSH 556
Score = 109 bits (232), Expect = 5e-023
Identities = 50/103 (48%), Positives = 56/103 (54%)
Frame = -2 / -1
Query: 488 YVFPSSMFMPQNPGL*MPTPPAGQSLQRTSILRATMFRLKHDXXXXXXXXXXXXXXXSQG 309
Y FP ++FMPQ PGL PTP G TSIL AT+ R K + QG
Sbjct: 462 YFFPCTIFMPQKPGLETPTPSGGHLSHNTSILNATLLRSKQELSSVCSLTDDSVPIMVQG 283
Query: 308 SMFDGVLGPPASKPLLLTSSAHIPPAPPWPISSKNTPRNVSGI 180
+FDGV P AS P L TS AHIPP P W ISS N P+ V GI
Sbjct: 282 KIFDGVRVPAASNPELFTS*AHIPPDPAWLISS*NIPKRVLGI 154
>gb|AW689696.1|AW689696 NF023D01ST1F1000 Developing stem Medicago truncatula cDNA clone
NF023D01ST 5', mRNA sequence
Length = 634
Score = 156 bits (336), Expect(2) = 2e-044
Identities = 61/91 (67%), Positives = 73/91 (80%)
Frame = +1 / +1
Query: 142 TLKVDASPKLARKIPDTFLGVFFEEMGHGGAGGIWAELVSNRGFEAGGPNTPSNIDPWLI 321
TL VDAS R+IP+T G+FFEE+ H GAGG+WAELVSN GFEAGGPN PSNIDPW I
Sbjct: 262 TLVVDASQASGRRIPETLFGIFFEEINHAGAGGLWAELVSNXGFEAGGPNIPSNIDPWSI 441
Query: 322 VGDDSSVYVETDRSSCFSRNIVALRMEVLCN 414
+G+ + + VETDR+SCF RN VAL +EVLC+
Sbjct: 442 IGNATYINVETDRTSCFERNKVALXLEVLCD 534
Score = 91.2 bits (193), Expect(2) = 2e-021
Identities = 46/88 (52%), Positives = 50/88 (56%)
Frame = -2 / -3
Query: 404 TSILRATMFRLKHDXXXXXXXXXXXXXXXSQGSMFDGVLGPPASKPLLLTSSAHIPPAPP 225
TS AT+ R K D QGS+FDG+LGPPAS P LLTSSAH PPAP
Sbjct: 524 TSNXSATLLRSKQDVRSVSTLIYVAFPIIDQGSIFDGMLGPPASNPXLLTSSAHNPPAPA 345
Query: 224 WPISSKNTPRNVSGIFRASFGEASTLRV 141
ISSKN P+ VSGI EAST V
Sbjct: 344 *LISSKNIPKRVSGIRLPDA*EASTTSV 261
Score = 43.6 bits (89), Expect(2) = 2e-044
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +1 / +2
Query: 421 PAGGVGIYNPGFWGMNI 471
P GVG+YNPGFWGMNI
Sbjct: 545 PTDGVGVYNPGFWGMNI 595
Score = 32.2 bits (64), Expect(2) = 2e-021
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -2 / -2
Query: 470 MFMPQNPGL*MPTPPAG 420
+FMPQ PGL* PTP G
Sbjct: 594 IFMPQXPGL*TPTPSVG 544
>gb|AW695082.1|AW695082 NF091D12ST1F1101 Developing stem Medicago truncatula cDNA clone
NF091D12ST 5', mRNA sequence
Length = 628
Score = 162 bits (348), Expect(2) = 2e-042
Identities = 63/91 (69%), Positives = 75/91 (82%)
Frame = +1 / +2
Query: 142 TLKVDASPKLARKIPDTFLGVFFEEMGHGGAGGIWAELVSNRGFEAGGPNTPSNIDPWLI 321
TL VDAS R+IP+T G+FFEE+ H GAGG+WAELVSNRGFEAGGPN PSNIDPW I
Sbjct: 311 TLVVDASQASGRRIPETLFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNIPSNIDPWSI 490
Query: 322 VGDDSSVYVETDRSSCFSRNIVALRMEVLCN 414
+G+ + + VETDR+SCF RN VALR+EVLC+
Sbjct: 491 IGNATYINVETDRTSCFERNKVALRLEVLCD 583
Score = 31.7 bits (63), Expect(2) = 2e-042
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +1 / +2
Query: 418 CPAGGVGIYNPGF 456
CP GVG+YNPG+
Sbjct: 590 CPTDGVGVYNPGY 628
>gb|BG450081.1|BG450081 NF011E06DT1F1051 Drought Medicago truncatula cDNA clone NF011E06DT
5', mRNA sequence
Length = 621
Score = 155 bits (334), Expect(2) = 2e-041
Identities = 61/88 (69%), Positives = 72/88 (81%)
Frame = +1 / +3
Query: 142 TLKVDASPKLARKIPDTFLGVFFEEMGHGGAGGIWAELVSNRGFEAGGPNTPSNIDPWLI 321
TL VDAS R+IP+T G+FFEE+ H GAGG+WAELVSNRGFEAGGPN PSNIDPW I
Sbjct: 282 TLVVDASQASGRRIPETLFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNIPSNIDPWSI 461
Query: 322 VGDDSSVYVETDRSSCFSRNIVALRMEV 405
+G+ + + VETDR+SCF RN VALR+EV
Sbjct: 462 IGNATYINVETDRTSCFERNKVALRLEV 545
Score = 34.5 bits (69), Expect(2) = 2e-041
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +1 / +2
Query: 418 CPAGGVGIYNPGFW 459
CP GVG+ NPGFW
Sbjct: 560 CPTDGVGVXNPGFW 601
>gb|CX535093.1|CX535093 s13dNF36H09MJ080_388365 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 505
Score = 106 bits (227), Expect(2) = 9e-041
Identities = 42/56 (75%), Positives = 49/56 (87%)
Frame = +1 / +3
Query: 247 AELVSNRGFEAGGPNTPSNIDPWLIVGDDSSVYVETDRSSCFSRNIVALRMEVLCN 414
AELVSNRGFEAGGPN PSNIDPW I+G+ + + VETDR+SCF RN VALR+EVLC+
Sbjct: 9 AELVSNRGFEAGGPNIPSNIDPWSIIGNATYINVETDRTSCFERNKVALRLEVLCD 176
Score = 81.6 bits (172), Expect(2) = 9e-041
Identities = 32/53 (60%), Positives = 38/53 (71%)
Frame = +1 / +3
Query: 418 CPAGGVGIYNPGFWGMNIEDGKTYHLVMYVKSPKTTCLTVSLTSSDGLQNLAS 576
CP GVG+YNPGFWGMNIE GK Y +V Y +S L VSLT S+G+ +LAS
Sbjct: 183 CPTDGVGVYNPGFWGMNIEQGKKYKVVFYARSTGPLNLKVSLTGSNGVGSLAS 341
>gb|CX535243.1|CX535243 s13dNF37C05MJ038_388663 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 437
Score = 162 bits (348), Expect(2) = 3e-040
Identities = 63/91 (69%), Positives = 75/91 (82%)
Frame = +1 / +3
Query: 142 TLKVDASPKLARKIPDTFLGVFFEEMGHGGAGGIWAELVSNRGFEAGGPNTPSNIDPWLI 321
TL VDAS R+IP+T G+FFEE+ H GAGG+WAELVSNRGFEAGGPN PSNIDPW I
Sbjct: 129 TLVVDASQASGRRIPETLFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNIPSNIDPWSI 308
Query: 322 VGDDSSVYVETDRSSCFSRNIVALRMEVLCN 414
+G+ + + VETDR+SCF RN VALR+EVLC+
Sbjct: 309 IGNATYINVETDRTSCFERNKVALRLEVLCD 401
Score = 24.4 bits (47), Expect(2) = 3e-040
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +1 / +3
Query: 418 CPAGGVGIYN 447
CP GVG+YN
Sbjct: 408 CPTDGVGVYN 437
>gb|CX542040.1|CX542040 s13dNF89D01GS014_467388 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 522
Score = 100 bits (214), Expect(2) = 5e-039
Identities = 39/53 (73%), Positives = 46/53 (86%)
Frame = +1 / +2
Query: 256 VSNRGFEAGGPNTPSNIDPWLIVGDDSSVYVETDRSSCFSRNIVALRMEVLCN 414
VSNRGFEAGGPN PSNIDPW I+G+ + + VETDR+SCF RN VALR+EVLC+
Sbjct: 2 VSNRGFEAGGPNIPSNIDPWSIIGNATYINVETDRTSCFERNKVALRLEVLCD 160
Score = 81.6 bits (172), Expect(2) = 5e-039
Identities = 32/53 (60%), Positives = 38/53 (71%)
Frame = +1 / +2
Query: 418 CPAGGVGIYNPGFWGMNIEDGKTYHLVMYVKSPKTTCLTVSLTSSDGLQNLAS 576
CP GVG+YNPGFWGMNIE GK Y +V Y +S L VSLT S+G+ +LAS
Sbjct: 167 CPTDGVGVYNPGFWGMNIEQGKKYKVVFYARSTGPLNLKVSLTGSNGVGSLAS 325
>gb|AW693828.2|AW693828 NF069E04ST1F1034 Developing stem Medicago truncatula cDNA clone
NF069E04ST 5', mRNA sequence
Length = 604
Score = 148 bits (318), Expect(2) = 1e-038
Identities = 58/84 (69%), Positives = 68/84 (80%)
Frame = +1 / +2
Query: 142 TLKVDASPKLARKIPDTFLGVFFEEMGHGGAGGIWAELVSNRGFEAGGPNTPSNIDPWLI 321
TL VDAS R+IP+T G+FFEE+ H GAGG+WAELVSNRGFEAGGPN PSNIDPW I
Sbjct: 284 TLVVDASQASGRRIPETLFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNIPSNIDPWSI 463
Query: 322 VGDDSSVYVETDRSSCFSRNIVAL 393
+G+ + + VETDR+SCF RN VAL
Sbjct: 464 IGNATYINVETDRTSCFERNKVAL 535
Score = 33.1 bits (66), Expect(2) = 1e-038
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +1 / +3
Query: 418 CPAGGVGIYNPGF 456
CP GVG+YNPGF
Sbjct: 564 CPTDGVGVYNPGF 602
>gb|CF068981.1|CF068981 EST669702 MTUS Medicago truncatula cDNA clone MTUS-14H2, mRNA
sequence
Length = 530
Score = 158 bits (341), Expect = 6e-038
Identities = 62/91 (68%), Positives = 74/91 (81%)
Frame = +1 / +1
Query: 142 TLKVDASPKLARKIPDTFLGVFFEEMGHGGAGGIWAELVSNRGFEAGGPNTPSNIDPWLI 321
TL VDAS R+IP+T G+FFEE+ H GAGG+WAELVSNRGFEAGGPN PSNIDPW I
Sbjct: 226 TLVVDASQASGRRIPETLFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNIPSNIDPWSI 405
Query: 322 VGDDSSVYVETDRSSCFSRNIVALRMEVLCN 414
+G+ + + VETDR+SCF RN ALR+EVLC+
Sbjct: 406 IGNATYINVETDRTSCFERNKGALRLEVLCD 498
>gb|AC141107.5| Medicago truncatula clone mth2-34a12, complete sequence
Length = 142659
Score = 116 bits (248), Expect(2) = 1e-030
Identities = 44/66 (66%), Positives = 52/66 (78%)
Frame = +1 / +3
Query: 268 GFEAGGPNTPSNIDPWLIVGDDSSVYVETDRSSCFSRNIVALRMEVLCNDCPAGGVGIYN 447
GFEA G TPSNI PW I+G +SSV ++T+ SSCF RN VALRM+VLC+ CP GVG+ N
Sbjct: 88821 GFEAAGTRTPSNIFPWTIIGTESSVKLQTELSSCFERNKVALRMDVLCDKCPPDGVGVSN 89000
Query: 448 PGFWGM 465
PGFWGM
Sbjct: 89001 PGFWGM 89018
Score = 116 bits (248), Expect(2) = 1e-028
Identities = 43/66 (65%), Positives = 53/66 (80%)
Frame = +1 / +3
Query: 268 GFEAGGPNTPSNIDPWLIVGDDSSVYVETDRSSCFSRNIVALRMEVLCNDCPAGGVGIYN 447
GFEAGG PSN PW IVG +++++VET+ SSCF RN VALRM+VLC++CP GVGI N
Sbjct: 72546 GFEAGGKKMPSNFAPWTIVGTETTIHVETELSSCFERNKVALRMDVLCDNCPFDGVGISN 72725
Query: 448 PGFWGM 465
PG+WGM
Sbjct: 72726 PGYWGM 72743
Score = 106 bits (226), Expect(2) = 9e-025
Identities = 41/66 (62%), Positives = 50/66 (75%)
Frame = +1 / +3
Query: 268 GFEAGGPNTPSNIDPWLIVGDDSSVYVETDRSSCFSRNIVALRMEVLCNDCPAGGVGIYN 447
GFEAGG PSN DPW IVG ++ ++V T+ SS F RN VALR++VLC++CP GVGI N
Sbjct: 61557 GFEAGGTQVPSNFDPWAIVGTEADIHVVTELSSSFERNKVALRIDVLCDNCPVDGVGISN 61736
Query: 448 PGFWGM 465
PGF GM
Sbjct: 61737 PGFKGM 61754
Score = 92.1 bits (195), Expect(5) = 6e-037
Identities = 35/49 (71%), Positives = 42/49 (85%)
Frame = +1 / +2
Query: 268 GFEAGGPNTPSNIDPWLIVGDDSSVYVETDRSSCFSRNIVALRMEVLCN 414
GFEAGGPN PSNIDPW I+G+ + + VETDR+SCF RN VALR+EVLC+
Sbjct: 54917 GFEAGGPNIPSNIDPWSIIGNATYINVETDRTSCFERNKVALRLEVLCD 55063
Score = 47.7 bits (98), Expect(5) = 6e-037
Identities = 18/28 (64%), Positives = 21/28 (75%)
Frame = +1 / +3
Query: 187 DTFLGVFFEEMGHGGAGGIWAELVSNRG 270
D FL +E+ H GAGG+WAELVSNRG
Sbjct: 54714 DEFLEFDLQEINHAGAGGLWAELVSNRG 54797
Score = 43.1 bits (88), Expect(5) = 6e-037
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +1 / +2
Query: 418 CPAGGVGIYNPGFWGM 465
CP GVG+YNPGFWGM
Sbjct: 55070 CPTDGVGVYNPGFWGM 55117
Score = 41.3 bits (84), Expect(5) = 6e-037
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = +1 / +2
Query: 466 NIEDGKTYHLVMYVKSPKTTCLTVSLTSSDGLQNLAS 576
NIE GK Y +V Y +S L VSLT S+G+ +LAS
Sbjct: 55346 NIEQGKKYKVVFYARSTGPLNLKVSLTGSNGVGSLAS 55456
Score = 40.9 bits (83), Expect(2) = 1e-028
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = +1 / +2
Query: 211 EEMGHGGAGGIWAELVSNRG 270
+E+ H GAGG+W+ELV+NRG
Sbjct: 72107 QEINHAGAGGLWSELVNNRG 72166
Score = 37.7 bits (76), Expect(2) = 1e-030
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +1 / +3
Query: 211 EEMGHGGAGGIWAELVSNRG 270
+E+ H G+GGIWA+LV+N G
Sbjct: 88683 QEINHAGSGGIWAQLVNNSG 88742
Score = 37.7 bits (76), Expect(2) = 9e-025
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +1 / +2
Query: 211 EEMGHGGAGGIWAELVSNRG 270
+E+ G GGIW+ELVSNRG
Sbjct: 61160 QEVNRAGTGGIWSELVSNRG 61219
Score = 35.8 bits (72), Expect(5) = 6e-037
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +1 / +3
Query: 142 TLKVDASPKLARKIPDTFLGVFFE 213
TL VDAS R+IP+T G+FFE
Sbjct: 54348 TLVVDASQASGRRIPETLFGIFFE 54419
>gb|CB892038.1|CB892038 EST649007 KV3 Medicago truncatula cDNA clone KV3-53A7, mRNA
sequence
Length = 569
Score = 92.1 bits (195), Expect(2) = 2e-036
Identities = 35/49 (71%), Positives = 42/49 (85%)
Frame = +1 / +1
Query: 268 GFEAGGPNTPSNIDPWLIVGDDSSVYVETDRSSCFSRNIVALRMEVLCN 414
GFEAGGPN PSNIDPW I+G+ + + VETDR+SCF RN VALR+EVLC+
Sbjct: 1 GFEAGGPNIPSNIDPWSIIGNATYINVETDRTSCFERNKVALRLEVLCD 147
Score = 81.6 bits (172), Expect(2) = 2e-036
Identities = 32/53 (60%), Positives = 38/53 (71%)
Frame = +1 / +1
Query: 418 CPAGGVGIYNPGFWGMNIEDGKTYHLVMYVKSPKTTCLTVSLTSSDGLQNLAS 576
CP GVG+YNPGFWGMNIE GK Y +V Y +S L VSLT S+G+ +LAS
Sbjct: 154 CPTDGVGVYNPGFWGMNIEQGKKYKVVFYARSTGPLNLKVSLTGSNGVGSLAS 312
>gb|CX523840.1|CX523840 s13dNF05F06AT059_440078 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 547
Score = 139 bits (298), Expect = 5e-032
Identities = 53/77 (68%), Positives = 63/77 (81%)
Frame = +1 / +3
Query: 142 TLKVDASPKLARKIPDTFLGVFFEEMGHGGAGGIWAELVSNRGFEAGGPNTPSNIDPWLI 321
TL VDAS R+IP+T G+FFEE+ H GAGG+WAELVSNRGFEAGGPN PSNIDPW I
Sbjct: 315 TLVVDASQASGRRIPETLFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNIPSNIDPWSI 494
Query: 322 VGDDSSVYVETDRSSCF 372
+G+ + + VETDR+SCF
Sbjct: 495 IGNATYINVETDRTSCF 545
>gb|BF647863.1|BF647863 NF038B02EC1F1016 Elicited cell culture Medicago truncatula cDNA
clone NF038B02EC 5', mRNA sequence
Length = 614
Score = 93.9 bits (199), Expect(4) = 8e-030
Identities = 36/50 (72%), Positives = 41/50 (82%)
Frame = +1 / +3
Query: 142 TLKVDASPKLARKIPDTFLGVFFEEMGHGGAGGIWAELVSNRGFEAGGPN 291
TL VDAS R+IP+T G+FFEE+ H GAGG+WAELVSNRGFEAGGPN
Sbjct: 288 TLVVDASQASGRRIPETLFGIFFEEINHAGAGGLWAELVSNRGFEAGGPN 437
Score = 34.0 bits (68), Expect(4) = 8e-030
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +1 / +1
Query: 421 PAGGVGIYNPGFW 459
P GVG+YNPGFW
Sbjct: 574 PXDGVGVYNPGFW 612
Score = 29.9 bits (59), Expect(4) = 8e-030
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1 / +1
Query: 295 PSNIDPWLIVGDDSSVYV 348
PSNIDPW I+G+ + + V
Sbjct: 442 PSNIDPWSIIGNATYINV 495
Score = 29.0 bits (57), Expect(4) = 8e-030
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1 / +2
Query: 349 ETDRSSCFSRNIVAL 393
ETDR+ CF RN VAL
Sbjct: 497 ETDRTXCFERNKVAL 541
>gb|AC161401.2| Medicago truncatula chromosome 7 clone mte1-59b16, *** SEQUENCING IN
PROGRESS ***, 2 ordered pieces
Length = 95675
Score = 50.0 bits (103), Expect(6) = 2e-028
Identities = 20/32 (62%), Positives = 25/32 (78%)
Frame = +1 / +3
Query: 316 LIVGDDSSVYVETDRSSCFSRNIVALRMEVLC 411
+I + SS+ V TDRSSCF RN VALR++VLC
Sbjct: 40818 IIEDNSSSIIVSTDRSSCFERNKVALRLDVLC 40913
Score = 48.6 bits (100), Expect(6) = 2e-028
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = +1 / +1
Query: 268 GFEAGGPNTPSNIDPWLIVGDDSS 339
GFEAGG N SNI+PW+I+GD+SS
Sbjct: 4867 GFEAGGSNVSSNINPWIIIGDNSS 4938
Score = 47.7 bits (98), Expect(6) = 2e-028
Identities = 17/28 (60%), Positives = 21/28 (75%)
Frame = +1 / +1
Query: 187 DTFLGVFFEEMGHGGAGGIWAELVSNRG 270
D+ FF+E+ H GAGG+WAELV NRG
Sbjct: 4519 DSINTYFFQEINHAGAGGLWAELVDNRG 4602
Score = 38.6 bits (78), Expect(6) = 2e-028
Identities = 13/16 (81%), Positives = 13/16 (81%)
Frame = +1 / +3
Query: 418 CPAGGVGIYNPGFWGM 465
CP GGVGI NP FWGM
Sbjct: 40926 CPLGGVGISNPEFWGM 40973
Score = 36.7 bits (74), Expect(6) = 2e-028
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = +1 / +3
Query: 454 FWGMNIEDGKTYHLVMYVKSPKTTCLTVSLTSSDGLQNLAS 576
F+ NIE GK Y +V YV+S L VS SD LAS
Sbjct: 41052 FYKQNIEQGKKYKVVFYVRSLGPINLQVSFIGSDDGVKLAS 41174
Score = 28.5 bits (56), Expect(6) = 2e-028
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1 / +2
Query: 148 KVDASPKLARKIPDTFLGVFFE 213
K+ + R IPDTF G FFE
Sbjct: 4370 KLVIDARTRRPIPDTFFGAFFE 4435
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.317 0.136 0.423
Matrix: BLOSUM62
Number of Hits to DB: 625,161,089
Number of Sequences: 392609
Number of extensions: 8585792
Number of successful extensions: 50724
Number of sequences better than 1.0e-020: 26
length of database: 147,244,331
effective HSP length: 51
effective length of database: 127,221,272
effective search space used: 19210412072
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.6 bits)