TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8010462.2.1
(638 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC133709.11| Medicago truncatula clone mth2-7b3, complet... 74 2e-021
gb|AC144928.17| Medicago truncatula clone mth2-8a18, comple... 74 2e-021
emb|CR341062.1| mte1-73O23FM1 BAC end, cultivar Jemalong A1... 74 2e-021
emb|CR338083.1| mte1-7O5RM1 BAC end, cultivar Jemalong A17 ... 74 2e-021
emb|CR341174.1| mte1-73I20RM1 BAC end, cultivar Jemalong A1... 74 2e-021
>gb|AC133709.11| Medicago truncatula clone mth2-7b3, complete sequence
Length = 138950
Score = 74.4 bits (156), Expect(2) = 2e-021
Identities = 27/41 (65%), Positives = 34/41 (82%)
Frame = +1 / -3
Query: 73 VESGXPLVPNRIRECRSYPLYRFVREEVGTEYLTGERTRSP 195
+E+G P VPN I+ECRSYPLY+F+RE +GT LTGE+ RSP
Sbjct: 113685 IENGNPAVPNMIKECRSYPLYKFMRETLGTSLLTGEKIRSP 113563
Score = 49.2 bits (101), Expect(2) = 2e-021
Identities = 16/20 (80%), Positives = 19/20 (95%)
Frame = +1 / -3
Query: 247 IDPLLECLKEWNGAPLPLC* 306
IDP+L+CLKEWNG PLP+C*
Sbjct: 113514 IDPMLDCLKEWNGVPLPIC* 113455
>gb|AC144928.17| Medicago truncatula clone mth2-8a18, complete sequence
Length = 138948
Score = 74.4 bits (156), Expect(2) = 2e-021
Identities = 27/41 (65%), Positives = 34/41 (82%)
Frame = +1 / +2
Query: 73 VESGXPLVPNRIRECRSYPLYRFVREEVGTEYLTGERTRSP 195
+E+G P VPN I+ECRSYPLY+F+RE +GT LTGE+ RSP
Sbjct: 25265 IENGNPAVPNMIKECRSYPLYKFMRETLGTSLLTGEKIRSP 25387
Score = 49.2 bits (101), Expect(2) = 2e-021
Identities = 16/20 (80%), Positives = 19/20 (95%)
Frame = +1 / +2
Query: 247 IDPLLECLKEWNGAPLPLC* 306
IDP+L+CLKEWNG PLP+C*
Sbjct: 25436 IDPMLDCLKEWNGVPLPIC* 25495
>emb|CR341062.1| mte1-73O23FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 760
Score = 74.4 bits (156), Expect(2) = 2e-021
Identities = 27/41 (65%), Positives = 34/41 (82%)
Frame = +1 / +3
Query: 73 VESGXPLVPNRIRECRSYPLYRFVREEVGTEYLTGERTRSP 195
+E+G P VPN I+ECRSYPLY+F+RE +GT LTGE+ RSP
Sbjct: 300 IENGNPAVPNMIKECRSYPLYKFMRETLGTSLLTGEKIRSP 422
Score = 49.2 bits (101), Expect(2) = 2e-021
Identities = 16/20 (80%), Positives = 19/20 (95%)
Frame = +1 / +3
Query: 247 IDPLLECLKEWNGAPLPLC* 306
IDP+L+CLKEWNG PLP+C*
Sbjct: 471 IDPMLDCLKEWNGVPLPIC* 530
>emb|CR338083.1| mte1-7O5RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 632
Score = 74.4 bits (156), Expect(2) = 2e-021
Identities = 27/41 (65%), Positives = 34/41 (82%)
Frame = +1 / +2
Query: 73 VESGXPLVPNRIRECRSYPLYRFVREEVGTEYLTGERTRSP 195
+E+G P VPN I+ECRSYPLY+F+RE +GT LTGE+ RSP
Sbjct: 284 IENGNPAVPNMIKECRSYPLYKFMRETLGTSLLTGEKIRSP 406
Score = 49.2 bits (101), Expect(2) = 2e-021
Identities = 16/20 (80%), Positives = 19/20 (95%)
Frame = +1 / +2
Query: 247 IDPLLECLKEWNGAPLPLC* 306
IDP+L+CLKEWNG PLP+C*
Sbjct: 455 IDPMLDCLKEWNGVPLPIC* 514
>emb|CR341174.1| mte1-73I20RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 563
Score = 74.4 bits (156), Expect(2) = 2e-021
Identities = 27/41 (65%), Positives = 34/41 (82%)
Frame = +1 / +2
Query: 73 VESGXPLVPNRIRECRSYPLYRFVREEVGTEYLTGERTRSP 195
+E+G P VPN I+ECRSYPLY+F+RE +GT LTGE+ RSP
Sbjct: 284 IENGNPAVPNMIKECRSYPLYKFMRETLGTSLLTGEKIRSP 406
Score = 49.2 bits (101), Expect(2) = 2e-021
Identities = 16/20 (80%), Positives = 19/20 (95%)
Frame = +1 / +2
Query: 247 IDPLLECLKEWNGAPLPLC* 306
IDP+L+CLKEWNG PLP+C*
Sbjct: 455 IDPMLDCLKEWNGVPLPIC* 514
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 511,221,114
Number of Sequences: 392609
Number of extensions: 6254069
Number of successful extensions: 34066
Number of sequences better than 1.0e-020: 5
length of database: 147,244,331
effective HSP length: 54
effective length of database: 126,043,445
effective search space used: 19914864310
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)