TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3754578.2.1
(725 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC144478.20| Medicago truncatula clone mth2-20b20, compl... 114 4e-029
gb|BG451837.1|BG451837 NF101B02DT1F1013 Drought Medicago tr... 114 5e-029
gb|CX525575.1|CX525575 s13dNF24F07AT063_479784 Aphid-Infect... 114 5e-029
gb|AL370494.1|AL370494 MtBA38B07R1 MtBA Medicago truncatula... 105 8e-022
>gb|AC144478.20| Medicago truncatula clone mth2-20b20, complete sequence
Length = 144248
Score = 114 bits (243), Expect(2) = 4e-029
Identities = 38/53 (71%), Positives = 47/53 (88%)
Frame = -3 / -2
Query: 681 NSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASCCNYR* 523
++ VQYSH+WKFCQYGC++ Y+TAHYQSPRQM+CLWDKL RG+A CCN+R*
Sbjct: 6625 HTVGAVQYSHNWKFCQYGCMDGYFTAHYQSPRQMVCLWDKLSRGRARCCNFR* 6467
Score = 35.0 bits (70), Expect(2) = 4e-029
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = -3 / -2
Query: 717 EDVSMGLWVEKFNST 673
EDVSMG+WVE+FN T
Sbjct: 6664 EDVSMGMWVERFNHT 6620
>gb|BG451837.1|BG451837 NF101B02DT1F1013 Drought Medicago truncatula cDNA clone NF101B02DT
5', mRNA sequence
Length = 663
Score = 114 bits (243), Expect(2) = 5e-029
Identities = 38/53 (71%), Positives = 47/53 (88%)
Frame = -3 / -3
Query: 681 NSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASCCNYR* 523
++ VQYSH+WKFCQYGC++ Y+TAHYQSPRQM+CLWDKL RG+A CCN+R*
Sbjct: 271 HTVGAVQYSHNWKFCQYGCMDGYFTAHYQSPRQMVCLWDKLSRGRARCCNFR* 113
Score = 35.0 bits (70), Expect(2) = 5e-029
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = -3 / -3
Query: 717 EDVSMGLWVEKFNST 673
EDVSMG+WVE+FN T
Sbjct: 310 EDVSMGMWVERFNHT 266
>gb|CX525575.1|CX525575 s13dNF24F07AT063_479784 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 550
Score = 114 bits (243), Expect(2) = 5e-029
Identities = 38/53 (71%), Positives = 47/53 (88%)
Frame = -3 / -3
Query: 681 NSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASCCNYR* 523
++ VQYSH+WKFCQYGC++ Y+TAHYQSPRQM+CLWDKL RG+A CCN+R*
Sbjct: 407 HTVGAVQYSHNWKFCQYGCMDGYFTAHYQSPRQMVCLWDKLSRGRARCCNFR* 249
Score = 35.0 bits (70), Expect(2) = 5e-029
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = -3 / -3
Query: 717 EDVSMGLWVEKFNST 673
EDVSMG+WVE+FN T
Sbjct: 446 EDVSMGMWVERFNHT 402
>gb|AL370494.1|AL370494 MtBA38B07R1 MtBA Medicago truncatula cDNA clone MtBA38B07 T7, mRNA
sequence
Length = 524
Score = 105 bits (224), Expect = 8e-022
Identities = 38/54 (70%), Positives = 44/54 (81%)
Frame = -3 / +1
Query: 696 WVEKFNSTNPVQYSHSWKFCQYGCLENYYTAHYQSPRQMLCLWDKLVRGQASCC 535
WVE+FNST V YSHS +FCQ+GC+E YYTAHYQSPRQM+CLWDKL R + C
Sbjct: 1 WVEQFNSTISVLYSHSLRFCQFGCIEGYYTAHYQSPRQMMCLWDKLQRHTSPQC 162
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 812,805,566
Number of Sequences: 392609
Number of extensions: 12144372
Number of successful extensions: 55668
Number of sequences better than 1.0e-020: 4
length of database: 147,244,331
effective HSP length: 54
effective length of database: 126,043,445
effective search space used: 23570124215
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)