TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2649891.2.1
(621 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG453428.1|BG453428 NF091G11LF1F1085 Developing leaf Med... 89 2e-036
>gb|BG453428.1|BG453428 NF091G11LF1F1085 Developing leaf Medicago truncatula cDNA clone
NF091G11LF 5', mRNA sequence
Length = 638
Score = 88.6 bits (187), Expect(3) = 2e-036
Identities = 34/67 (50%), Positives = 49/67 (73%)
Frame = -2 / +3
Query: 620 GAMAKPGQADQLRSAGRLRIQYXRVPCSWNGMDIAFKVDAGSNANYLAVLVEYESGDGEL 441
G+MA G+ ++LR+AG++ I++ RV C++ G IAF VD+GSN Y A L+EYE GDG+L
Sbjct: 54 GSMAVSGEDEELRNAGKIVIEHRRVQCNYGGSTIAFHVDSGSNQEYFAALIEYEEGDGDL 233
Query: 440 RSVELMQ 420
VEL +
Sbjct: 234 NKVELKE 254
Score = 56.1 bits (116), Expect(3) = 2e-036
Identities = 21/30 (70%), Positives = 25/30 (83%)
Frame = -2 / +3
Query: 308 TSGSGRTVVASDVIPAGWTPGATYRSVVNF 219
T SG+T+VA +VIPAGW PG TYRS+VNF
Sbjct: 360 TLKSGKTIVAHNVIPAGWKPGQTYRSIVNF 449
Score = 46.9 bits (96), Expect(3) = 2e-036
Identities = 16/27 (59%), Positives = 21/27 (77%)
Frame = -2 / +3
Query: 383 MQQSWGXVWRXNSGATLQGPFSVRLTS 303
MQQSWG VW+ + GA L+ P S+RLT+
Sbjct: 282 MQQSWGAVWKFDKGAPLKAPISIRLTT 362
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 399,858,194
Number of Sequences: 392609
Number of extensions: 4054849
Number of successful extensions: 31333
Number of sequences better than 1.0e-020: 2
length of database: 147,244,331
effective HSP length: 54
effective length of database: 126,043,445
effective search space used: 19158603640
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)