TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2594342.2.1
(715 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL375979.1|AL375979 MtBB20D10R1 MtBB Medicago truncatula... 151 1e-035
gb|AL376011.1|AL376011 MtBB20F06R1 MtBB Medicago truncatula... 151 1e-035
gb|AW773723.1|AW773723 EST332709 KV3 Medicago truncatula cD... 141 1e-032
gb|AL376394.1|AL376394 MtBB23E07R1 MtBB Medicago truncatula... 141 1e-032
gb|BG645994.1|BG645994 EST507613 KV3 Medicago truncatula cD... 141 1e-032
>gb|AL375979.1|AL375979 MtBB20D10R1 MtBB Medicago truncatula cDNA clone MtBB20D10 T7, mRNA
sequence
Length = 551
Score = 151 bits (324), Expect = 1e-035
Identities = 64/102 (62%), Positives = 76/102 (74%)
Frame = -2 / +3
Query: 711 GALCEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVV 532
G C+ L F++ LR++N G+ S TVFLFS+PPAV NAP K LL FEKV +V
Sbjct: 51 GEHCQNLVFDIHLRIKNKGKMSSSQTVFLFSTPPAVHNAPQKHLLAFEKVHFTGKSEALV 230
Query: 531 AFKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLGV* 406
+FKVDVCKDLSVVDELGNRKVALG H LHVGDLKH L++ +*
Sbjct: 231 SFKVDVCKDLSVVDELGNRKVALGKHMLHVGDLKHPLSVMI* 356
>gb|AL376011.1|AL376011 MtBB20F06R1 MtBB Medicago truncatula cDNA clone MtBB20F06 T7, mRNA
sequence
Length = 552
Score = 151 bits (324), Expect = 1e-035
Identities = 64/102 (62%), Positives = 76/102 (74%)
Frame = -2 / +2
Query: 711 GALCEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVV 532
G C+ L F++ LR++N G+ S TVFLFS+PPAV NAP K LL FEKV +V
Sbjct: 47 GEHCQNLVFDIHLRIKNKGKMSSSQTVFLFSTPPAVHNAPQKHLLAFEKVHFTGKSEALV 226
Query: 531 AFKVDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLGV* 406
+FKVDVCKDLSVVDELGNRKVALG H LHVGDLKH L++ +*
Sbjct: 227 SFKVDVCKDLSVVDELGNRKVALGKHMLHVGDLKHPLSVMI* 352
>gb|AW773723.1|AW773723 EST332709 KV3 Medicago truncatula cDNA clone pKV3-15N9, mRNA
sequence
Length = 650
Score = 141 bits (302), Expect = 1e-032
Identities = 60/100 (60%), Positives = 74/100 (74%)
Frame = -2 / -1
Query: 702 CEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVVAFK 523
C+ LAF++ L V+N G+ S +V LF +PP V NAP K LLGFEKV L G+V FK
Sbjct: 473 CQNLAFDIHLSVKNMGKMSSSHSVLLFFTPPNVHNAPQKHLLGFEKVQLAGKSEGMVRFK 294
Query: 522 VDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLGV*W 403
VDVC DLSVVDELGNRKV LG H LHVG+LKH+L++ +*+
Sbjct: 293 VDVCNDLSVVDELGNRKVPLGDHMLHVGNLKHSLSVRI*F 174
>gb|AL376394.1|AL376394 MtBB23E07R1 MtBB Medicago truncatula cDNA clone MtBB23E07 T7, mRNA
sequence
Length = 480
Score = 141 bits (302), Expect = 1e-032
Identities = 60/100 (60%), Positives = 74/100 (74%)
Frame = -2 / +3
Query: 702 CEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVVAFK 523
C+ LAF++ L V+N G+ S +V LF +PP V NAP K LLGFEKV L G+V FK
Sbjct: 15 CQNLAFDIHLSVKNMGKMSSSHSVLLFFTPPNVHNAPQKHLLGFEKVQLAGKSEGMVRFK 194
Query: 522 VDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLGV*W 403
VDVC DLSVVDELGNRKV LG H LHVG+LKH+L++ +*+
Sbjct: 195 VDVCNDLSVVDELGNRKVPLGDHMLHVGNLKHSLSVRI*F 314
>gb|BG645994.1|BG645994 EST507613 KV3 Medicago truncatula cDNA clone pKV3-48M5 5' end, mRNA
sequence
Length = 666
Score = 141 bits (302), Expect = 1e-032
Identities = 60/100 (60%), Positives = 74/100 (74%)
Frame = -2 / -3
Query: 702 CEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVVAFK 523
C+ LAF++ L V+N G+ S +V LF +PP V NAP K LLGFEKV L G+V FK
Sbjct: 448 CQNLAFDIHLSVKNMGKMSSSHSVLLFFTPPNVHNAPQKHLLGFEKVQLAGKSEGMVRFK 269
Query: 522 VDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLGV*W 403
VDVC DLSVVDELGNRKV LG H LHVG+LKH+L++ +*+
Sbjct: 268 VDVCNDLSVVDELGNRKVPLGDHMLHVGNLKHSLSVRI*F 149
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 594,758,206
Number of Sequences: 392609
Number of extensions: 7914753
Number of successful extensions: 85709
Number of sequences better than 1.0e-020: 6
length of database: 147,244,331
effective HSP length: 54
effective length of database: 126,043,445
effective search space used: 23065950435
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)