TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3922840.2.1
(683 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO513284.1|CO513284 s13dSG37B1200093_129732 Glandular tr... 126 4e-030
gb|AJ248332.1|AJ248332 AJ248332 Medicago sativa subsp. x va... 97 2e-021
>gb|CO513284.1|CO513284 s13dSG37B1200093_129732 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 585
Score = 126 bits (269), Expect = 4e-030
Identities = 42/68 (61%), Positives = 51/68 (75%)
Frame = -1 / +2
Query: 482 HGQAEAIDCGASCSYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNEDVCPCYANMKTH 303
H A IDC C YRCSK+ R K+C+RAC +CC++C CVPPGTSGN D CPCYA++ TH
Sbjct: 140 HMVAAQIDCNGKCGYRCSKASRQKICMRACNSCCKKCNCVPPGTSGNTDTCPCYASLTTH 319
Query: 302 DGQHKCP* 279
G+ KCP*
Sbjct: 320 GGKLKCP* 343
>gb|AJ248332.1|AJ248332 AJ248332 Medicago sativa subsp. x varia young root nodule Medicago
sativa subsp. x varia cDNA clone MsNod605, mRNA sequence
Length = 394
Score = 96.8 bits (205), Expect = 2e-021
Identities = 32/63 (50%), Positives = 42/63 (66%)
Frame = -1 / +2
Query: 458 CGASCSYRCSKSGRPKMCLRACGTCCQRCGCVPPGTSGNEDVCPCYANMKTHDGQHKCP* 279
C + C RCSK+ CL+ CG CC++C CVP GT GN+D CPCY +MK G+ KCP*
Sbjct: 17 CTSKCPVRCSKASIQDRCLKFCGICCEKCNCVPSGTYGNKDECPCYRDMKNSKGKGKCP* 196
Query: 278 SIH 270
++
Sbjct: 197 FVN 205
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 5,145,266
Number of Sequences: 7669
Number of extensions: 68272
Number of successful extensions: 1451
Number of sequences better than 1.0e-020: 3
length of database: 1,248,568
effective HSP length: 42
effective length of database: 926,470
effective search space used: 171396950
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)