TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2969865.2.1
(675 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ410120.1|AJ410120 AJ410120 Medicago sativa library (Ka... 169 4e-044
>gb|AJ410120.1|AJ410120 AJ410120 Medicago sativa library (Kalo P) Medicago sativa cDNA
clone U40, mRNA sequence
Length = 757
Score = 169 bits (364), Expect(2) = 4e-044
Identities = 71/86 (82%), Positives = 72/86 (83%)
Frame = +3 / +3
Query: 87 PMAXXXXXXXXXXXFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 266
PM F+TGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN
Sbjct: 120 PMEEDAVGKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLEN 299
Query: 267 VREMWTEVPKTGKGKKKALPVNKDRF 344
VREMWTEVPKTGKGKKKA PVNKD F
Sbjct: 300 VREMWTEVPKTGKGKKKAQPVNKDPF 377
Score = 119 bits (254), Expect(2) = 5e-029
Identities = 55/86 (63%), Positives = 60/86 (69%)
Frame = -3 / -1
Query: 343 NLSLFTGRAFFLPLPVFGTSVHISLTFSRTMLQCRSKARTRPSNFLLFRQLIRTWVLFLT 164
N SL TG AFF PLPV GTSVHIS TFSRT+LQC SKA TRP +FLL RQLIRT VLF T
Sbjct: 376 NGSLLTG*AFFFPLPVLGTSVHISRTFSRTILQCLSKALTRPRSFLLLRQLIRTCVLFFT 197
Query: 163 LIMSTERGPXXXXXXXXXXXXXSAMG 86
LIMST+ GP S++G
Sbjct: 196 LIMSTDSGPVLNSSSSFFPTASSSIG 119
Score = 23.1 bits (44), Expect(2) = 4e-044
Identities = 6/8 (75%), Positives = 6/8 (75%)
Frame = +2 / +1
Query: 362 PWGFGHHC 385
PW F HHC
Sbjct: 397 PWRFCHHC 420
Score = 22.6 bits (43), Expect(2) = 5e-029
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = -3 / -2
Query: 385 TMMTESPRR 359
TMMTESPR+
Sbjct: 420 TMMTESPRK 394
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 5,367,019
Number of Sequences: 7669
Number of extensions: 67252
Number of successful extensions: 884
Number of sequences better than 1.0e-020: 2
length of database: 1,248,568
effective HSP length: 42
effective length of database: 926,470
effective search space used: 168617540
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)