TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2835489.2.1
(885 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW698762.1|AW698762 r336 non-glandular-haired subtracted... 141 1e-034
>gb|AW698762.1|AW698762 r336 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 390
Score = 141 bits (302), Expect = 1e-034
Identities = 59/96 (61%), Positives = 74/96 (77%)
Frame = -3 / +2
Query: 883 ESRTRRILRVKFISGVFEHPFSDQSLLDIVGCKEHRLLAREAVRKSLVLLKNGKDQNKPF 704
+ RIL VKF G+FE+P +D SL++ +G + HR LAREA+RKSLVLLKNGK+Q+
Sbjct: 77 DDAVERILVVKFTMGLFENPPADFSLVNELGSQAHRDLAREALRKSLVLLKNGKNQSAQL 256
Query: 703 LPLAKDAKRILVAGTHADDIGYQCGGWTIAWHGDSG 596
LPL K A++ILVAGTHAD++GYQCGGWTI W G G
Sbjct: 257 LPLPKKARKILVAGTHADNLGYQCGGWTIKWQGFIG 364
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 8,856,260
Number of Sequences: 7669
Number of extensions: 139123
Number of successful extensions: 1262
Number of sequences better than 1.0e-020: 1
length of database: 1,248,568
effective HSP length: 42
effective length of database: 926,470
effective search space used: 233470440
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)