TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2647492.2.1
(1179 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DQ122845.1| Medicago sativa clone NE1 polygalacturonase-... 117 3e-027
>gb|DQ122845.1| Medicago sativa clone NE1 polygalacturonase-like protein mRNA,
partial cds
Length = 618
Score = 117 bits (250), Expect = 3e-027
Identities = 47/91 (51%), Positives = 60/91 (65%)
Frame = -1 / +2
Query: 1170 LQDVVXXXXXXXXXXXGSAWWDMWKXXXLLYTRPHLLELMSSSDIIVSNVVFQDSPFWNI 991
L DV+ GS WW + L YTRP+L+ELM S +I +SN+ DSP WNI
Sbjct: 341 LTDVIVTGDNGTIDGQGSFWWQQFHNKKLKYTRPYLIELMFSDNIQISNLTLLDSPSWNI 520
Query: 990 HPVYCSNVVIRNVTILAPHDSPNTDGIDPDS 898
HPVY SN++I+ +TI+AP SPNTDGI+PDS
Sbjct: 521 HPVYSSNIIIKGITIIAPIRSPNTDGINPDS 613
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 10,467,250
Number of Sequences: 7669
Number of extensions: 163342
Number of successful extensions: 1323
Number of sequences better than 1.0e-020: 1
length of database: 1,248,568
effective HSP length: 43
effective length of database: 918,801
effective search space used: 320661549
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)