TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2594342.2.1
(715 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO512201.1|CO512201 s13dSG03B1200093_113916 Glandular tr... 140 1e-034
>gb|CO512201.1|CO512201 s13dSG03B1200093_113916 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 607
Score = 140 bits (301), Expect = 1e-034
Identities = 60/99 (60%), Positives = 73/99 (73%)
Frame = -2 / +3
Query: 702 CEGLAFNVPLRVRNAGRRSGGPTVFLFSSPPAVPNAPAKPLLGFEKVSLEPGQAGVVAFK 523
C+ LAF++ L V+N G+ S +V LF +PP V NAP K LLGFEKV L G+V FK
Sbjct: 228 CQNLAFDIHLSVKNMGKMSSSHSVLLFFTPPNVHNAPQKHLLGFEKVQLAGKSEGMVRFK 407
Query: 522 VDVCKDLSVVDELGNRKVALGSHTLHVGDLKHTLNLGV* 406
VDVC DLSVVDELGNRKV LG H LHVG+LKH+L++ +*
Sbjct: 408 VDVCNDLSVVDELGNRKVPLGDHMLHVGNLKHSLSVRI* 524
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 5,532,550
Number of Sequences: 7669
Number of extensions: 79003
Number of successful extensions: 2186
Number of sequences better than 1.0e-020: 1
length of database: 1,248,568
effective HSP length: 42
effective length of database: 926,470
effective search space used: 180661650
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)