TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2306445.2.1
(1074 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO511765.1|CO511765 s13dSG01G1100088_103430 Glandular tr... 140 5e-045
emb|Y11607.1|MSMP2C M.sativa mRNA for protein phosphatase 2C 82 1e-044
>gb|CO511765.1|CO511765 s13dSG01G1100088_103430 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 545
Score = 140 bits (301), Expect(2) = 5e-045
Identities = 54/115 (46%), Positives = 83/115 (72%)
Frame = -3 / +1
Query: 1066 VSGGGLSQNGRFSYGYASSPGKRASMEDFYETKIDCVDGQIVGLFGVFDGHGGAKVAEYV 887
V+GG S++ R S GY+S GKR +MEDFY+ K +DG+ V LFG+FDGHGG++ AE++
Sbjct: 55 VTGGC*SEDERLSCGYSSFRGKRVTMEDFYDIKTSTIDGRSVCLFGIFDGHGGSRAAEHL 234
Query: 886 KENLFNNLVSHPKFISDTKVAIDDAYKSTDSEFLESDSSQNQCGSTASTAVLVGD 722
K++LF NL+ HPKF++DTK+AI + Y+ TD+EFL S+ + + ++ ++ D
Sbjct: 235 KDHLFENLMKHPKFLTDTKLAISETYQQTDAEFLNSEKDNFRDDGSTASTAVLVD 399
Score = 62.0 bits (129), Expect(3) = 2e-024
Identities = 33/93 (35%), Positives = 49/93 (52%)
Frame = +2 / -3
Query: 788 EFTVGAFISIIYSDFSITDELWMTNKIVEQVFFNILCYLSTTMTIKNSKKTNYLAINTIN 967
+ ++ I YS F I +LWM ++I++++ +L TTMTIK SK N AIN
Sbjct: 333 KLSIRLLICFTYSQFGIRQKLWMLHEILKKMILQMLSSTRTTMTIKYSK*AN*TAING*C 154
Query: 968 FCLIEVFHGCPFTRGACIAIAKSTILAEAAAAD 1066
+IE+ HG A I AKS I A+ ++
Sbjct: 153 LNIIEILHGHSLPPKA*IPTAKSFIFTLASTSN 55
Score = 55.6 bits (115), Expect(2) = 5e-045
Identities = 21/29 (72%), Positives = 27/29 (93%)
Frame = -3 / +3
Query: 664 AIAVSKDHKPDQTDERQRIEDAGGFVMWA 578
AIA+S DHKP+++DER+RIE+AGG VMWA
Sbjct: 459 AIALSVDHKPNRSDERKRIENAGGVVMWA 545
Score = 42.8 bits (87), Expect(3) = 2e-024
Identities = 18/31 (58%), Positives = 22/31 (70%)
Frame = +3 / -1
Query: 666 FPSLHMIALESPTFATKRRSPTSTAVDAVDP 758
FP+ + LESPT AT RR T TAV+AV+P
Sbjct: 458 FPAFDITVLESPTLAT*RRLSTKTAVEAVEP 366
Score = 40.0 bits (81), Expect(3) = 2e-024
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +2 / -1
Query: 578 CPHHKTSSIFNTLPLISLIRLVIL*NSN 661
CPH T+SI N+LPLI+ IR +I SN
Sbjct: 545 CPHDNTTSILNSLPLITSIRFMIYRESN 462
>emb|Y11607.1|MSMP2C M.sativa mRNA for protein phosphatase 2C
Length = 1499
Score = 81.7 bits (172), Expect(4) = 1e-044
Identities = 34/63 (53%), Positives = 44/63 (69%)
Frame = -3 / +3
Query: 577 GTWRVGGVLAVSRAFGDKLLKQYVVVDPEIREEVVDDTLEFLILASDGLWDVVSNEEAVA 398
G WR+ G LAVSR GD+ LKQ+V +PE + ++ + LILASDGLWD VSN+EAV
Sbjct: 915 GVWRIQGSLAVSRGIGDRHLKQWVTAEPETKVIRIEPEHDLLILASDGLWDKVSNQEAVD 1094
Query: 397 MTR 389
+ R
Sbjct: 1095 IAR 1103
Score = 63.8 bits (133), Expect(4) = 1e-044
Identities = 27/57 (47%), Positives = 36/57 (63%)
Frame = -3 / +3
Query: 757 GSTASTAVLVGDRLFVANVGDSRAIICREGNAIAVSKDHKPDQTDERQRIEDAGGFV 587
GS TA + L V+N GD RA+I R G A A++ DH+P + DE+ RIE GG+V
Sbjct: 732 GSCCVTAFIRNGNLVVSNAGDCRAVISRGGVAEALTSDHRPSREDEKDRIETLGGYV 902
Score = 56.1 bits (116), Expect(4) = 1e-044
Identities = 23/56 (41%), Positives = 31/56 (55%)
Frame = -3 / +3
Query: 1027 YGYASSPGKRASMEDFYETKIDCVDGQIVGLFGVFDGHGGAKVAEYVKENLFNNLV 860
Y G+R MED Y ++ + FGVFDGHGGAK AE+ + NL N++
Sbjct: 465 YSVYCKRGRREYMEDRYTAGVNLRGENNLAFFGVFDGHGGAKAAEFARNNLEKNIL 632
Score = 29.5 bits (58), Expect(4) = 1e-044
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3 / +3
Query: 838 DTKVAIDDAYKSTDSEFLESDSSQNQCGSTA 746
D + A+ Y +TDSEF++ D C TA
Sbjct: 660 DVEEAVKRGYLNTDSEFMKKDLHGGSCCVTA 752
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 9,174,828
Number of Sequences: 7669
Number of extensions: 124555
Number of successful extensions: 1359
Number of sequences better than 1.0e-020: 2
length of database: 1,248,568
effective HSP length: 43
effective length of database: 918,801
effective search space used: 288503514
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)