TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.060L08F020610.3.1
(677 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA009590.1|CA009590 HU14I23r HU Hordeum vulgare subsp. v... 188 1e-060
gb|BF264487.2|BF264487 HV_CEa0009I22f Hordeum vulgare seedl... 180 4e-057
gb|AV932103.1|AV932103 AV932103 K. Sato unpublished cDNA li... 180 4e-057
gb|CA024621.1|CA024621 HZ49N06r HZ Hordeum vulgare subsp. v... 180 4e-057
gb|CA029603.1|CA029603 HZ65L02r HZ Hordeum vulgare subsp. v... 180 4e-057
gb|BM374077.2|BM374077 EBma03_SQ003_J08_R maternal, 8 DPA, ... 175 1e-054
gb|BU979580.1|BU979580 HA16J20r HA Hordeum vulgare subsp. v... 155 2e-048
gb|BI949335.1|BI949335 HVSMEl0013G12f Hordeum vulgare spike... 173 1e-042
gb|CA024152.1|CA024152 HZ48I02r HZ Hordeum vulgare subsp. v... 166 2e-040
gb|CA029433.1|CA029433 HZ65D06r HZ Hordeum vulgare subsp. v... 112 5e-038
gb|CA024885.1|CA024885 HZ50J14r HZ Hordeum vulgare subsp. v... 145 3e-034
gb|CA026435.1|CA026435 HZ55O15r HZ Hordeum vulgare subsp. v... 145 3e-034
gb|CA029014.1|CA029014 HZ63P04r HZ Hordeum vulgare subsp. v... 84 6e-034
gb|BI952689.1|BI952689 HVSMEm0007G12f Hordeum vulgare green... 143 9e-034
gb|CA020538.1|CA020538 HZ36J20r HZ Hordeum vulgare subsp. v... 141 4e-033
gb|CA024147.1|CA024147 HZ48H21r HZ Hordeum vulgare subsp. v... 138 4e-032
gb|BF627539.2|BF627539 HVSMEb0005C01f Hordeum vulgare seedl... 131 3e-030
gb|CA028957.1|CA028957 HZ63L22r HZ Hordeum vulgare subsp. v... 130 9e-030
gb|BM100077.2|BM100077 EBma01_SQ001_B24_R maternal, 4 DPA, ... 80 1e-028
>gb|CA009590.1|CA009590 HU14I23r HU Hordeum vulgare subsp. vulgare cDNA clone HU14I23
5-PRIME, mRNA sequence
Length = 598
Score = 188 bits (404), Expect(2) = 1e-060
Identities = 75/89 (84%), Positives = 81/89 (91%)
Frame = +1 / +3
Query: 139 LSVDASPQNARKIPDKMFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNTPSNIDPWLII 318
L VD+SP ARKIPD +FGIFFEEINHAGAGG+WAELVSNRGFEAGGP+TPSNI+PW II
Sbjct: 156 LGVDSSPHLARKIPDTLFGIFFEEINHAGAGGIWAELVSNRGFEAGGPHTPSNINPWSII 335
Query: 319 GDESSIIVGTDRTSCFERNPVALRMEVLC 405
GD+SSI VGTDRTSCF RN VALRMEVLC
Sbjct: 336 GDDSSIFVGTDRTSCFSRNKVALRMEVLC 422
Score = 149 bits (319), Expect(2) = 5e-041
Identities = 65/89 (73%), Positives = 71/89 (79%)
Frame = -1 / -1
Query: 404 QRTSIRSATGLRSKHDVRSVPTMILDSSPMISHGSIFEGVLGPPASNPLLLTSSAHNPPA 225
QRTSI AT R KHDVRSVPT + +SSPM+ HG IF+GV GPPAS PLLLTSSAH PPA
Sbjct: 421 QRTSILRATLFRLKHDVRSVPTNMEESSPMMDHGLIFDGVWGPPASKPLLLTSSAHIPPA 242
Query: 224 PAWLISSKKMPNILSGIFLAFCGEASTLR 138
PAWLISSK +PN +SGIF A CGE ST R
Sbjct: 241 PAWLISSKNIPNSVSGIFRARCGEESTPR 155
Score = 65.7 bits (137), Expect(2) = 1e-060
Identities = 21/31 (67%), Positives = 26/31 (83%)
Frame = +1 / +3
Query: 427 CPSGGVGVYNPGYWGMNIEKGKVYKVSLHVR 519
CP GGVG+YNPG+WGMNIE GK Y + +HV+
Sbjct: 429 CPVGGVGIYNPGFWGMNIEDGKTYNLVMHVK 521
Score = 38.6 bits (78), Expect(2) = 5e-041
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = -3 / -3
Query: 501 LINLPLFNVHAPVARIIDPNTSRWTGIS 418
++ LP+F VHAP R+++ NT+ W I+
Sbjct: 503 IVGLPIFYVHAPEPRVVNANTANWAVIT 420
>gb|BF264487.2|BF264487 HV_CEa0009I22f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0009I22f, mRNA sequence
Length = 865
Score = 180 bits (387), Expect(2) = 4e-057
Identities = 73/89 (82%), Positives = 79/89 (88%)
Frame = +1 / +1
Query: 139 LSVDASPQNARKIPDKMFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNTPSNIDPWLII 318
L VDAS Q ARKIPD +FG+FFEEINHAGAGG+WAELVSNRGFEAGG +TPSNIDPW II
Sbjct: 199 LKVDASSQLARKIPDTLFGMFFEEINHAGAGGIWAELVSNRGFEAGGLHTPSNIDPWSII 378
Query: 319 GDESSIIVGTDRTSCFERNPVALRMEVLC 405
GD+SSI V TDRTSCF RN +ALRMEVLC
Sbjct: 379 GDDSSIFVATDRTSCFSRNIIALRMEVLC 465
Score = 145 bits (312), Expect(2) = 4e-039
Identities = 64/89 (71%), Positives = 70/89 (78%)
Frame = -1 / -3
Query: 404 QRTSIRSATGLRSKHDVRSVPTMILDSSPMISHGSIFEGVLGPPASNPLLLTSSAHNPPA 225
QRTSI A R KHDVRSV T + +SSP+I HGSIF+GV PPAS PLLLTSSAH PPA
Sbjct: 464 QRTSILRAIMFRLKHDVRSVATNMEESSPIIDHGSIFDGVWSPPASKPLLLTSSAHMPPA 285
Query: 224 PAWLISSKKMPNILSGIFLAFCGEASTLR 138
PAWLISSK +PN +SGIF A C EASTLR
Sbjct: 284 PAWLISSKNIPNSVSGIFRASCDEASTLR 198
Score = 61.6 bits (128), Expect(2) = 4e-057
Identities = 19/31 (61%), Positives = 26/31 (83%)
Frame = +1 / +1
Query: 427 CPSGGVGVYNPGYWGMNIEKGKVYKVSLHVR 519
CP+ GVG+YNPG+WGMNIE GK Y + ++V+
Sbjct: 472 CPASGVGIYNPGFWGMNIEDGKTYNLVMYVK 564
Score = 35.4 bits (71), Expect(2) = 4e-039
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = -1 / -3
Query: 626 PFCKGFLATCDGMSSELFVAHRSLSREAVKDSASDDLTCRLTL*TFPFSMFM 471
P C + ++ F L+ E V +AS DLT L* FP SMFM
Sbjct: 671 PLCPVEVPATGTVTEARFCTPSELANETVNSAASADLTYITRL*VFPSSMFM 516
>gb|AV932103.1|AV932103 AV932103 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2e14 5', mRNA sequence
Length = 644
Score = 180 bits (387), Expect(2) = 4e-057
Identities = 73/89 (82%), Positives = 79/89 (88%)
Frame = +1 / +1
Query: 139 LSVDASPQNARKIPDKMFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNTPSNIDPWLII 318
L VDAS Q ARKIPD +FG+FFEEINHAGAGG+WAELVSNRGFEAGG +TPSNIDPW II
Sbjct: 214 LKVDASSQLARKIPDTLFGMFFEEINHAGAGGIWAELVSNRGFEAGGLHTPSNIDPWSII 393
Query: 319 GDESSIIVGTDRTSCFERNPVALRMEVLC 405
GD+SSI V TDRTSCF RN +ALRMEVLC
Sbjct: 394 GDDSSIFVATDRTSCFSRNIIALRMEVLC 480
Score = 145 bits (312), Expect(2) = 3e-038
Identities = 64/89 (71%), Positives = 70/89 (78%)
Frame = -1 / -1
Query: 404 QRTSIRSATGLRSKHDVRSVPTMILDSSPMISHGSIFEGVLGPPASNPLLLTSSAHNPPA 225
QRTSI A R KHDVRSV T + +SSP+I HGSIF+GV PPAS PLLLTSSAH PPA
Sbjct: 479 QRTSILRAIMFRLKHDVRSVATNMEESSPIIDHGSIFDGVWSPPASKPLLLTSSAHMPPA 300
Query: 224 PAWLISSKKMPNILSGIFLAFCGEASTLR 138
PAWLISSK +PN +SGIF A C EASTLR
Sbjct: 299 PAWLISSKNIPNSVSGIFRASCDEASTLR 213
Score = 61.6 bits (128), Expect(2) = 4e-057
Identities = 19/31 (61%), Positives = 26/31 (83%)
Frame = +1 / +1
Query: 427 CPSGGVGVYNPGYWGMNIEKGKVYKVSLHVR 519
CP+ GVG+YNPG+WGMNIE GK Y + ++V+
Sbjct: 487 CPASGVGIYNPGFWGMNIEDGKTYNLVMYVK 579
Score = 32.7 bits (65), Expect(2) = 3e-038
Identities = 16/29 (55%), Positives = 18/29 (62%)
Frame = -1 / -1
Query: 557 LSREAVKDSASDDLTCRLTL*TFPFSMFM 471
L+ E V +AS DLT L* FP SMFM
Sbjct: 617 LANETVNSAASADLTYITRL*VFPSSMFM 531
>gb|CA024621.1|CA024621 HZ49N06r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ49N06
5-PRIME, mRNA sequence
Length = 598
Score = 180 bits (387), Expect(2) = 4e-057
Identities = 73/89 (82%), Positives = 79/89 (88%)
Frame = +1 / +3
Query: 139 LSVDASPQNARKIPDKMFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNTPSNIDPWLII 318
L VDAS Q ARKIPD +FG+FFEEINHAGAGG+WAELVSNRGFEAGG +TPSNIDPW II
Sbjct: 204 LKVDASSQLARKIPDTLFGMFFEEINHAGAGGIWAELVSNRGFEAGGLHTPSNIDPWSII 383
Query: 319 GDESSIIVGTDRTSCFERNPVALRMEVLC 405
GD+SSI V TDRTSCF RN +ALRMEVLC
Sbjct: 384 GDDSSIFVATDRTSCFSRNIIALRMEVLC 470
Score = 145 bits (312), Expect(2) = 1e-037
Identities = 64/89 (71%), Positives = 70/89 (78%)
Frame = -1 / -1
Query: 404 QRTSIRSATGLRSKHDVRSVPTMILDSSPMISHGSIFEGVLGPPASNPLLLTSSAHNPPA 225
QRTSI A R KHDVRSV T + +SSP+I HGSIF+GV PPAS PLLLTSSAH PPA
Sbjct: 469 QRTSILRAIMFRLKHDVRSVATNMEESSPIIDHGSIFDGVWSPPASKPLLLTSSAHMPPA 290
Query: 224 PAWLISSKKMPNILSGIFLAFCGEASTLR 138
PAWLISSK +PN +SGIF A C EASTLR
Sbjct: 289 PAWLISSKNIPNSVSGIFRASCDEASTLR 203
Score = 61.6 bits (128), Expect(2) = 4e-057
Identities = 19/31 (61%), Positives = 26/31 (83%)
Frame = +1 / +3
Query: 427 CPSGGVGVYNPGYWGMNIEKGKVYKVSLHVR 519
CP+ GVG+YNPG+WGMNIE GK Y + ++V+
Sbjct: 477 CPASGVGIYNPGFWGMNIEDGKTYNLVMYVK 569
Score = 30.4 bits (60), Expect(2) = 1e-037
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = -1 / -1
Query: 548 EAVKDSASDDLTCRLTL*TFPFSMFM 471
E V +AS DLT L* FP SMFM
Sbjct: 598 ETVNSAASADLTYITRL*VFPSSMFM 521
>gb|CA029603.1|CA029603 HZ65L02r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ65L02
5-PRIME, mRNA sequence
Length = 598
Score = 180 bits (387), Expect(2) = 4e-057
Identities = 73/89 (82%), Positives = 79/89 (88%)
Frame = +1 / +3
Query: 139 LSVDASPQNARKIPDKMFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNTPSNIDPWLII 318
L VDAS Q ARKIPD +FG+FFEEINHAGAGG+WAELVSNRGFEAGG +TPSNIDPW II
Sbjct: 204 LKVDASSQLARKIPDTLFGMFFEEINHAGAGGIWAELVSNRGFEAGGLHTPSNIDPWSII 383
Query: 319 GDESSIIVGTDRTSCFERNPVALRMEVLC 405
GD+SSI V TDRTSCF RN +ALRMEVLC
Sbjct: 384 GDDSSIFVATDRTSCFSRNIIALRMEVLC 470
Score = 145 bits (312), Expect(2) = 1e-037
Identities = 64/89 (71%), Positives = 70/89 (78%)
Frame = -1 / -1
Query: 404 QRTSIRSATGLRSKHDVRSVPTMILDSSPMISHGSIFEGVLGPPASNPLLLTSSAHNPPA 225
QRTSI A R KHDVRSV T + +SSP+I HGSIF+GV PPAS PLLLTSSAH PPA
Sbjct: 469 QRTSILRAIMFRLKHDVRSVATNMEESSPIIDHGSIFDGVWSPPASKPLLLTSSAHMPPA 290
Query: 224 PAWLISSKKMPNILSGIFLAFCGEASTLR 138
PAWLISSK +PN +SGIF A C EASTLR
Sbjct: 289 PAWLISSKNIPNSVSGIFRASCDEASTLR 203
Score = 61.6 bits (128), Expect(2) = 4e-057
Identities = 19/31 (61%), Positives = 26/31 (83%)
Frame = +1 / +3
Query: 427 CPSGGVGVYNPGYWGMNIEKGKVYKVSLHVR 519
CP+ GVG+YNPG+WGMNIE GK Y + ++V+
Sbjct: 477 CPASGVGIYNPGFWGMNIEDGKTYNLVMYVK 569
Score = 30.4 bits (60), Expect(2) = 1e-037
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = -1 / -1
Query: 548 EAVKDSASDDLTCRLTL*TFPFSMFM 471
E V +AS DLT L* FP SMFM
Sbjct: 598 ETVNSAASADLTYITRL*VFPSSMFM 521
>gb|BM374077.2|BM374077 EBma03_SQ003_J08_R maternal, 8 DPA, no treatment, cv Optic, EBma03
Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ003_J08 5', mRNA sequence
Length = 659
Score = 175 bits (377), Expect(2) = 1e-054
Identities = 71/97 (73%), Positives = 78/97 (80%)
Frame = +1 / +3
Query: 139 LSVDASPQNARKIPDKMFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNTPSNIDPWLII 318
L VD S + ARKIP +FG+FFEEINHAGAGGLWAELVSN+GFE GGP+TPSNIDPW II
Sbjct: 192 LQVDTSWKAARKIPQTLFGLFFEEINHAGAGGLWAELVSNKGFETGGPHTPSNIDPWSII 371
Query: 319 GDESSIIVGTDRTSCFERNPVALRMEVLCGSKKTNAC 429
GDESSI V T+RTSCF RN VALRME+LC C
Sbjct: 372 GDESSIYVKTERTSCFSRNIVALRMEILCAKCPAGRC 482
Score = 123 bits (264), Expect(2) = 9e-031
Identities = 58/87 (66%), Positives = 62/87 (71%)
Frame = -1 / -2
Query: 404 QRTSIRSATGLRSKHDVRSVPTMILDSSPMISHGSIFEGVLGPPASNPLLLTSSAHNPPA 225
QR SI AT K DV SV T + DSSPMI HGS+FEGV GPP S PLLLTSSAHNPPA
Sbjct: 457 QRISILRATIFLLKQDVLSVFTYMEDSSPMIDHGSMFEGV*GPPVSKPLLLTSSAHNPPA 278
Query: 224 PAWLISSKKMPNILSGIFLAFCGEAST 144
PAWLISSK P + GIFLA + ST
Sbjct: 277 PAWLISSKNKPKRV*GIFLAAFHDVST 197
Score = 57.4 bits (119), Expect(2) = 1e-054
Identities = 18/28 (64%), Positives = 25/28 (89%)
Frame = +1 / +1
Query: 436 GGVGVYNPGYWGMNIEKGKVYKVSLHVR 519
GGVG+YNPG+WGMNIE+GK Y + +++R
Sbjct: 475 GGVGIYNPGFWGMNIEEGKSYNLVMYIR 558
Score = 29.5 bits (58), Expect(2) = 9e-031
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = -3 / -3
Query: 525 **PNMQAHLINLPLFNVHAPVARIIDPNTSR 433
** ++ +I LP F VHAP + +++ NT++
Sbjct: 564 **SDIHYQIIALPFFYVHAPESWVVNTNTAQ 472
>gb|BU979580.1|BU979580 HA16J20r HA Hordeum vulgare subsp. vulgare cDNA clone HA16J20
5-PRIME, mRNA sequence
Length = 372
Score = 155 bits (332), Expect(2) = 2e-048
Identities = 63/80 (78%), Positives = 69/80 (86%)
Frame = +1 / +2
Query: 166 ARKIPDKMFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNTPSNIDPWLIIGDESSIIVG 345
ARKIP +FG+ EEINHAGAGGLWAELVSN+GFEAGGP+TPSNIDPW IIGDESSI V
Sbjct: 59 ARKIPQTLFGLXXEEINHAGAGGLWAELVSNKGFEAGGPDTPSNIDPWSIIGDESSIYVK 238
Query: 346 TDRTSCFERNPVALRMEVLC 405
T+RTS RN VALRME+LC
Sbjct: 239 TERTSXXSRNIVALRMEILC 298
Score = 120 bits (257), Expect(2) = 5e-031
Identities = 56/80 (70%), Positives = 59/80 (73%)
Frame = -1 / -1
Query: 404 QRTSIRSATGLRSKHDVRSVPTMILDSSPMISHGSIFEGVLGPPASNPLLLTSSAHNPPA 225
QR SI AT DV SV T + DSSPMI HGS+FEGV GPPAS PLLLTSSAHNPPA
Sbjct: 297 QRISILRATIFLLXXDVLSVFTYMEDSSPMIDHGSMFEGVSGPPASKPLLLTSSAHNPPA 118
Query: 224 PAWLISSKKMPNILSGIFLA 165
PAWLISSK P + GIFLA
Sbjct: 117 PAWLISSKXKPKRV*GIFLA 58
Score = 57.9 bits (120), Expect(2) = 2e-048
Identities = 18/22 (81%), Positives = 22/22 (100%)
Frame = +1 / +2
Query: 427 CPSGGVGVYNPGYWGMNIEKGK 492
CP+GGVG+YNPG+WGMNIE+GK
Sbjct: 305 CPAGGVGIYNPGFWGMNIEEGK 370
Score = 33.6 bits (67), Expect(2) = 5e-031
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3 / -3
Query: 492 LPLFNVHAPVARIIDPNTSRWT 427
LP F VHAP + +++ NT+ WT
Sbjct: 370 LPFFYVHAPESWVVNTNTASWT 305
>gb|BI949335.1|BI949335 HVSMEl0013G12f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0013G12f, mRNA sequence
Length = 489
Score = 173 bits (372), Expect = 1e-042
Identities = 71/94 (75%), Positives = 78/94 (82%)
Frame = +1 / +3
Query: 139 LSVDASPQNARKIPDKMFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNTPSNIDPWLII 318
L VD S + ARKIP +FG+FFEEINHAGAGGLWAELVSN+GFEAGGP+TPSNIDPW II
Sbjct: 198 LQVDTSWKAARKIPQTLFGLFFEEINHAGAGGLWAELVSNKGFEAGGPHTPSNIDPWSII 377
Query: 319 GDESSIIVGTDRTSCFERNPVALRMEVLCGSKKT 420
GDESSI V T+RTSCF RN VAL ME+LC T
Sbjct: 378 GDESSIYVKTERTSCFSRNIVALTMEILCAKCPT 479
Score = 125 bits (267), Expect = 3e-028
Identities = 59/87 (67%), Positives = 63/87 (72%)
Frame = -1 / -3
Query: 404 QRTSIRSATGLRSKHDVRSVPTMILDSSPMISHGSIFEGVLGPPASNPLLLTSSAHNPPA 225
QR SI AT K DV SV T + DSSPMI HGS+FEGV GPPAS PLLLTSSAHNPPA
Sbjct: 463 QRISIVRATIFLLKQDVLSVFTYMEDSSPMIDHGSMFEGV*GPPASKPLLLTSSAHNPPA 284
Query: 224 PAWLISSKKMPNILSGIFLAFCGEAST 144
PAWLISSK P + GIFLA + ST
Sbjct: 283 PAWLISSKNKPKRV*GIFLAAFHDVST 203
>gb|CA024152.1|CA024152 HZ48I02r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ48I02
5-PRIME, mRNA sequence
Length = 463
Score = 166 bits (356), Expect = 2e-040
Identities = 68/85 (80%), Positives = 74/85 (87%)
Frame = +1 / +1
Query: 139 LSVDASPQNARKIPDKMFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNTPSNIDPWLII 318
L VD S + ARKIP +FG+FFEEINHAGAGGLWAELVSN+GFEAGGP+TPSNIDPW II
Sbjct: 208 LQVDTSWKAARKIPQTLFGLFFEEINHAGAGGLWAELVSNKGFEAGGPHTPSNIDPWSII 387
Query: 319 GDESSIIVGTDRTSCFERNPVALRM 393
GDESSI V T+RTSCF RN VALRM
Sbjct: 388 GDESSIYVKTERTSCFSRNIVALRM 462
Score = 119 bits (255), Expect = 1e-026
Identities = 56/83 (67%), Positives = 60/83 (72%)
Frame = -1 / -3
Query: 392 IRSATGLRSKHDVRSVPTMILDSSPMISHGSIFEGVLGPPASNPLLLTSSAHNPPAPAWL 213
I AT K DV SV T + DSSPMI HGS+FEGV GPPAS PLLLTSSAHNPPAPAWL
Sbjct: 461 ILRATIFLLKQDVLSVFTYMEDSSPMIDHGSMFEGV*GPPASKPLLLTSSAHNPPAPAWL 282
Query: 212 ISSKKMPNILSGIFLAFCGEAST 144
ISSK P + GIFLA + ST
Sbjct: 281 ISSKNKPKRV*GIFLAAFHDVST 213
>gb|CA029433.1|CA029433 HZ65D06r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ65D06
5-PRIME, mRNA sequence
Length = 642
Score = 112 bits (239), Expect(2) = 5e-038
Identities = 45/54 (83%), Positives = 49/54 (90%)
Frame = +1 / +3
Query: 244 ELVSNRGFEAGGPNTPSNIDPWLIIGDESSIIVGTDRTSCFERNPVALRMEVLC 405
ELVSN+GFEAGGP+TPSNIDPW IIGDESSI V T+RTSCF RN VALRME+LC
Sbjct: 3 ELVSNKGFEAGGPHTPSNIDPWSIIGDESSIYVKTERTSCFSRNIVALRMEILC 164
Score = 65.2 bits (136), Expect(2) = 5e-038
Identities = 20/31 (64%), Positives = 28/31 (90%)
Frame = +1 / +3
Query: 427 CPSGGVGVYNPGYWGMNIEKGKVYKVSLHVR 519
CP+GGVG+YNPG+WGMNIE+GK Y + +++R
Sbjct: 171 CPAGGVGIYNPGFWGMNIEEGKSYNLVMYIR 263
>gb|CA024885.1|CA024885 HZ50J14r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ50J14
5-PRIME, mRNA sequence
Length = 417
Score = 145 bits (311), Expect = 3e-034
Identities = 59/74 (79%), Positives = 65/74 (87%)
Frame = +1 / +3
Query: 139 LSVDASPQNARKIPDKMFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNTPSNIDPWLII 318
L VD S + ARKIP +FG+FFEEINHAGAGGLWAELVSN+GFEAGGP+TPSNIDPW II
Sbjct: 195 LQVDTSWKAARKIPQTLFGLFFEEINHAGAGGLWAELVSNKGFEAGGPHTPSNIDPWSII 374
Query: 319 GDESSIIVGTDRTS 360
GDESSI V T+RTS
Sbjct: 375 GDESSIYVKTERTS 416
Score = 116 bits (248), Expect = 1e-025
Identities = 52/72 (72%), Positives = 56/72 (77%)
Frame = -1 / -3
Query: 359 DVRSVPTMILDSSPMISHGSIFEGVLGPPASNPLLLTSSAHNPPAPAWLISSKKMPNILS 180
DV SV T + DSSPMI HGS+FEGV GPPAS PLLLTSSAHNPPAPAWLISSK P +
Sbjct: 415 DVLSVFTYMEDSSPMIDHGSMFEGV*GPPASKPLLLTSSAHNPPAPAWLISSKNKPKRV* 236
Query: 179 GIFLAFCGEAST 144
GIFLA + ST
Sbjct: 235 GIFLAAFHDVST 200
>gb|CA026435.1|CA026435 HZ55O15r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ55O15
5-PRIME, mRNA sequence
Length = 438
Score = 145 bits (311), Expect = 3e-034
Identities = 59/74 (79%), Positives = 65/74 (87%)
Frame = +1 / +2
Query: 139 LSVDASPQNARKIPDKMFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNTPSNIDPWLII 318
L VD S + ARKIP +FG+FFEEINHAGAGGLWAELVSN+GFEAGGP+TPSNIDPW II
Sbjct: 215 LQVDTSWKAARKIPQTLFGLFFEEINHAGAGGLWAELVSNKGFEAGGPHTPSNIDPWSII 394
Query: 319 GDESSIIVGTDRTS 360
GDESSI V T+RTS
Sbjct: 395 GDESSIYVKTERTS 436
Score = 116 bits (248), Expect = 1e-025
Identities = 52/72 (72%), Positives = 56/72 (77%)
Frame = -1 / -1
Query: 359 DVRSVPTMILDSSPMISHGSIFEGVLGPPASNPLLLTSSAHNPPAPAWLISSKKMPNILS 180
DV SV T + DSSPMI HGS+FEGV GPPAS PLLLTSSAHNPPAPAWLISSK P +
Sbjct: 435 DVLSVFTYMEDSSPMIDHGSMFEGV*GPPASKPLLLTSSAHNPPAPAWLISSKNKPKRV* 256
Query: 179 GIFLAFCGEAST 144
GIFLA + ST
Sbjct: 255 GIFLAAFHDVST 220
>gb|CA029014.1|CA029014 HZ63P04r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ63P04
5-PRIME, mRNA sequence
Length = 379
Score = 84.0 bits (177), Expect(3) = 6e-034
Identities = 34/43 (79%), Positives = 37/43 (86%)
Frame = +1 / +1
Query: 277 GPNTPSNIDPWLIIGDESSIIVGTDRTSCFERNPVALRMEVLC 405
G +TPSNIDPW IIGDESSI V T+RTSCF RN VALRME+LC
Sbjct: 37 GLHTPSNIDPWSIIGDESSIYVKTERTSCFSRNIVALRMEILC 165
Score = 65.2 bits (136), Expect(3) = 6e-034
Identities = 20/31 (64%), Positives = 28/31 (90%)
Frame = +1 / +1
Query: 427 CPSGGVGVYNPGYWGMNIEKGKVYKVSLHVR 519
CP+GGVG+YNPG+WGMNIE+GK Y + +++R
Sbjct: 172 CPAGGVGIYNPGFWGMNIEEGKSYNLVMYIR 264
Score = 32.7 bits (65), Expect(3) = 6e-034
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +1 / +3
Query: 244 ELVSNRGFEAGGP 282
ELVSN+GFEAGGP
Sbjct: 3 ELVSNKGFEAGGP 41
>gb|BI952689.1|BI952689 HVSMEm0007G12f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0007G12f, mRNA sequence
Length = 417
Score = 143 bits (307), Expect = 9e-034
Identities = 58/73 (79%), Positives = 64/73 (87%)
Frame = +1 / +3
Query: 139 LSVDASPQNARKIPDKMFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNTPSNIDPWLII 318
L VD S + ARKIP +FG+FFEEINHAGAGGLWAELVSN+GFEAGGP+TPSNIDPW II
Sbjct: 198 LQVDTSWKAARKIPQTLFGLFFEEINHAGAGGLWAELVSNKGFEAGGPHTPSNIDPWSII 377
Query: 319 GDESSIIVGTDRT 357
GDESSI V T+RT
Sbjct: 378 GDESSIYVKTERT 416
Score = 113 bits (242), Expect = 8e-025
Identities = 51/71 (71%), Positives = 55/71 (77%)
Frame = -1 / -3
Query: 356 VRSVPTMILDSSPMISHGSIFEGVLGPPASNPLLLTSSAHNPPAPAWLISSKKMPNILSG 177
V SV T + DSSPMI HGS+FEGV GPPAS PLLLTSSAHNPPAPAWLISSK P + G
Sbjct: 415 VLSVFTYMEDSSPMIDHGSMFEGV*GPPASKPLLLTSSAHNPPAPAWLISSKNKPKRV*G 236
Query: 176 IFLAFCGEAST 144
IFLA + ST
Sbjct: 235 IFLAAFHDVST 203
>gb|CA020538.1|CA020538 HZ36J20r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ36J20
5-PRIME, mRNA sequence
Length = 416
Score = 141 bits (302), Expect = 4e-033
Identities = 57/72 (79%), Positives = 63/72 (87%)
Frame = +1 / +1
Query: 139 LSVDASPQNARKIPDKMFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNTPSNIDPWLII 318
L VD S + ARKIP +FG+FFEEINHAGAGGLWAELVSN+GFEAGGP+TPSNIDPW II
Sbjct: 199 LQVDTSWKAARKIPQTLFGLFFEEINHAGAGGLWAELVSNKGFEAGGPHTPSNIDPWSII 378
Query: 319 GDESSIIVGTDR 354
GDESSI V T+R
Sbjct: 379 GDESSIYVKTER 414
Score = 113 bits (242), Expect = 8e-025
Identities = 51/71 (71%), Positives = 55/71 (77%)
Frame = -1 / -1
Query: 356 VRSVPTMILDSSPMISHGSIFEGVLGPPASNPLLLTSSAHNPPAPAWLISSKKMPNILSG 177
V SV T + DSSPMI HGS+FEGV GPPAS PLLLTSSAHNPPAPAWLISSK P + G
Sbjct: 416 VLSVFTYMEDSSPMIDHGSMFEGV*GPPASKPLLLTSSAHNPPAPAWLISSKNKPKRV*G 237
Query: 176 IFLAFCGEAST 144
IFLA + ST
Sbjct: 236 IFLAAFHDVST 204
>gb|CA024147.1|CA024147 HZ48H21r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ48H21
5-PRIME, mRNA sequence
Length = 428
Score = 138 bits (295), Expect = 4e-032
Identities = 56/70 (80%), Positives = 61/70 (87%)
Frame = +1 / +2
Query: 139 LSVDASPQNARKIPDKMFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNTPSNIDPWLII 318
L VD S + ARKIP +FG+FFEEINHAGAGGLWAELVSN+GFEAGGP+TPSNIDPW II
Sbjct: 218 LQVDTSWKAARKIPQTLFGLFFEEINHAGAGGLWAELVSNKGFEAGGPHTPSNIDPWSII 397
Query: 319 GDESSIIVGT 348
GDESSI V T
Sbjct: 398 GDESSIYVKT 427
Score = 111 bits (236), Expect = 6e-024
Identities = 48/66 (72%), Positives = 52/66 (78%)
Frame = -1 / -3
Query: 341 TMILDSSPMISHGSIFEGVLGPPASNPLLLTSSAHNPPAPAWLISSKKMPNILSGIFLAF 162
T + DSSPMI HGS+FEGV GPPAS PLLLTSSAHNPPAPAWLISSK P + GIFLA
Sbjct: 420 TYMEDSSPMIDHGSMFEGV*GPPASKPLLLTSSAHNPPAPAWLISSKNKPKRV*GIFLAA 241
Query: 161 CGEAST 144
+ ST
Sbjct: 240 FHDVST 223
>gb|BF627539.2|BF627539 HVSMEb0005C01f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0005C01f, mRNA sequence
Length = 789
Score = 131 bits (281), Expect = 3e-030
Identities = 54/75 (72%), Positives = 62/75 (82%)
Frame = +1 / +3
Query: 139 LSVDASPQNARKIPDKMFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNTPSNIDPWLII 318
L VDAS Q ARKIPD +FG+FFEEINHA AGG+WAELVS+RGFEAGG + P N+DPW I+
Sbjct: 213 LKVDASSQLARKIPDTLFGMFFEEINHA*AGGIWAELVSDRGFEAGGLHAPWNMDPWSIV 392
Query: 319 GDESSIIVGTDRTSC 363
GD+S I V TDRT C
Sbjct: 393 GDDSFICVVTDRT*C 437
Score = 126 bits (270), Expect = 1e-028
Identities = 55/79 (69%), Positives = 60/79 (75%)
Frame = -1 / -3
Query: 374 LRSKHDVRSVPTMILDSSPMISHGSIFEGVLGPPASNPLLLTSSAHNPPAPAWLISSKKM 195
LR +H VRSV T + +SSP I HGSIF G PPASNPL LTSSAH PPA AWLISSK +
Sbjct: 448 LRLRHHVRSVTTHMKESSPTIDHGSIFHGAWSPPASNPLSLTSSAHMPPAHAWLISSKNI 269
Query: 194 PNILSGIFLAFCGEASTLR 138
PN +SGIF A C EASTLR
Sbjct: 268 PNSVSGIFRASCDEASTLR 212
>gb|CA028957.1|CA028957 HZ63L22r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ63L22
5-PRIME, mRNA sequence
Length = 390
Score = 130 bits (278), Expect = 9e-030
Identities = 52/62 (83%), Positives = 56/62 (90%)
Frame = +1 / +3
Query: 139 LSVDASPQNARKIPDKMFGIFFEEINHAGAGGLWAELVSNRGFEAGGPNTPSNIDPWLII 318
L VDAS Q ARKIPD +FG+FFEEINHAGAGG+WAELVSNRGFEAGG +TPSNIDPW II
Sbjct: 204 LKVDASSQLARKIPDTLFGMFFEEINHAGAGGIWAELVSNRGFEAGGLHTPSNIDPWSII 383
Query: 319 GD 324
GD
Sbjct: 384 GD 389
Score = 116 bits (247), Expect = 2e-025
Identities = 48/62 (77%), Positives = 52/62 (83%)
Frame = -1 / -3
Query: 323 SPMISHGSIFEGVLGPPASNPLLLTSSAHNPPAPAWLISSKKMPNILSGIFLAFCGEAST 144
SP+I HGSIF+GV PPAS PLLLTSSAH PPAPAWLISSK +PN +SGIF A C EAST
Sbjct: 388 SPIIDHGSIFDGVWSPPASKPLLLTSSAHMPPAPAWLISSKNIPNSVSGIFRASCDEAST 209
Query: 143 LR 138
LR
Sbjct: 208 LR 203
>gb|BM100077.2|BM100077 EBma01_SQ001_B24_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ001_B24 5', mRNA sequence
Length = 223
Score = 79.9 bits (168), Expect(2) = 1e-028
Identities = 32/39 (82%), Positives = 34/39 (87%)
Frame = +1 / +3
Query: 289 PSNIDPWLIIGDESSIIVGTDRTSCFERNPVALRMEVLC 405
PSNIDPW IIGDESSI V T+RTSCF RN VALRME+LC
Sbjct: 3 PSNIDPWSIIGDESSIYVKTERTSCFSRNIVALRMEILC 119
Score = 65.2 bits (136), Expect(2) = 1e-028
Identities = 20/31 (64%), Positives = 28/31 (90%)
Frame = +1 / +3
Query: 427 CPSGGVGVYNPGYWGMNIEKGKVYKVSLHVR 519
CP+GGVG+YNPG+WGMNIE+GK Y + +++R
Sbjct: 126 CPAGGVGIYNPGFWGMNIEEGKSYNLVMYIR 218
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 364,306,172
Number of Sequences: 312970
Number of extensions: 6404568
Number of successful extensions: 66185
Number of sequences better than 1.0e-020: 21
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 7380507366
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)