TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8010496.2.1
(1046 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AB040769.1| Hordeum vulgare mRNA for endo-1,4-beta-gluc... 264 1e-088
gb|BU985662.1|BU985662 HF08E02r HF Hordeum vulgare subsp. v... 249 2e-081
gb|AV916435.1|AV916435 AV916435 K. Sato unpublished cDNA li... 259 2e-081
gb|BQ765008.1|BQ765008 EBca01_SQ005_D16_R carpel, pre-anthe... 180 4e-077
gb|AV923747.1|AV923747 AV923747 K. Sato unpublished cDNA li... 252 8e-077
gb|AW983004.3|AW983004 HVSMEg0004M14f Hordeum vulgare pre-a... 264 3e-074
gb|BE601584.3|BE601584 HVSMEh0098M02f Hordeum vulgare 5-45 ... 264 1e-070
gb|BM097444.2|BM097444 EBro05_SQ003_F03_R root, 3 week, red... 264 4e-070
gb|BG418595.1|BG418595 HVSMEk0023G06f Hordeum vulgare testa... 257 6e-070
gb|BU994975.1|BU994975 HM08M21r HM Hordeum vulgare subsp. v... 245 5e-068
gb|AW982232.3|AW982232 HVSMEg0002G13f Hordeum vulgare pre-a... 248 4e-067
gb|BU967340.1|BU967340 HB03P20r BC Hordeum vulgare subsp. v... 142 1e-065
gb|BQ768653.1|BQ768653 EBro08_SQ012_F07_R root, 3 week, dro... 248 4e-065
gb|BE603205.3|BE603205 HVSMEh0102H23f Hordeum vulgare 5-45 ... 183 1e-061
gb|AV927273.1|AV927273 AV927273 K. Sato unpublished cDNA li... 226 1e-060
gb|BJ448471.1|BJ448471 BJ448471 K. Sato unpublished cDNA li... 170 9e-058
gb|BF255699.3|BF255699 HVSMEf0007J01f Hordeum vulgare seedl... 128 2e-056
gb|BU979160.1|BU979160 HA15F07r HA Hordeum vulgare subsp. v... 153 1e-050
gb|BI956352.1|BI956352 HVSMEn0002L24f Hordeum vulgare rachi... 199 2e-050
gb|BQ760319.1|BQ760319 EBpi07_SQ003_L24_R pistil, 12 DPA, n... 105 1e-043
gb|CB859220.1|CB859220 HI09M02w HI Hordeum vulgare subsp. v... 163 1e-043
gb|BF260719.2|BF260719 HVSMEf0022M05f Hordeum vulgare seedl... 128 4e-043
gb|BI949643.1|BI949643 HVSMEl0015A22f Hordeum vulgare spike... 100 8e-040
gb|CB875548.1|CB875548 HX08K06w HX Hordeum vulgare subsp. v... 81 3e-034
gb|AV920035.1|AV920035 AV920035 K. Sato unpublished cDNA li... 127 4e-031
gb|AV917955.1|AV917955 AV917955 K. Sato unpublished cDNA li... 127 4e-031
gb|BJ456192.1|BJ456192 BJ456192 K. Sato unpublished cDNA li... 127 4e-031
gb|CK125884.1|CK125884 BES1824111A2a04 BES1824 Hordeum vulg... 90 5e-027
gb|AV909996.1|AV909996 AV909996 K. Sato unpublished cDNA li... 88 3e-026
gb|AJ434494.1|AJ434494 AJ434494 S00002 Hordeum vulgare subs... 104 6e-026
gb|BQ764603.1|BQ764603 EBca01_SQ004_I10_R carpel, pre-anthe... 103 5e-024
gb|BF259829.2|BF259829 HVSMEf0020G01f Hordeum vulgare seedl... 73 1e-023
gb|CA024900.1|CA024900 HZ50K09r HZ Hordeum vulgare subsp. v... 102 1e-023
gb|BF256953.2|BF256953 HVSMEf0011H11f Hordeum vulgare seedl... 73 2e-023
gb|AV912096.1|AV912096 AV912096 K. Sato unpublished cDNA li... 77 2e-023
gb|CK123273.1|CK123273 BES1824103c09 BES1824 Hordeum vulgar... 74 4e-022
emb|Z34266.1|HVBKACPS1 H.vulgare (pMaW21) pseudo mRNA for b... 80 5e-021
gb|BQ766009.1|BQ766009 EBro03_SQ008_D24_R root, 3 week, wat... 66 6e-021
>dbj|AB040769.1| Hordeum vulgare mRNA for endo-1,4-beta-glucanase Cel1, complete cds
Length = 2442
Score = 264 bits (572), Expect(3) = 1e-088
Identities = 101/151 (66%), Positives = 120/151 (79%)
Frame = -3 / +1
Query: 747 KGGMALFNHGRGQPLQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQI 568
KGG+ NHG QPLQYVV +FLA+LYADY++ + PGWYCGPNF TT+ LR+FA+SQ+
Sbjct: 1468 KGGLIQLNHGGPQPLQYVVNAAFLASLYADYLDTADTPGWYCGPNFYTTDVLRKFAKSQL 1647
Query: 567 NYILGDNPKKMSYVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLLGG 388
+YILG NP+KMSYVVGFG KYP+ VHHRGAS PHNGVKY C GG+KWR+SKKA+PN+L G
Sbjct: 1648 DYILGKNPQKMSYVVGFGKKYPKRVHHRGASIPHNGVKYGCKGGFKWRESKKANPNILVG 1827
Query: 387 AMVGGPDKNDGFKDSRNTSGRTSRRWSGNAG 295
AMV GPDK+DGFKD R T + NAG
Sbjct: 1828 AMVAGPDKHDGFKDIRTNYNYTEPTLAANAG 1920
Score = 148 bits (318), Expect(3) = 4e-041
Identities = 74/136 (54%), Positives = 79/136 (58%)
Frame = +2 / -2
Query: 338 LRESLKPSFLSGPPTMAPPSRLGSAFLLSRHL*PPVHEYLTPLCGVDAPRWCTCRGYLLP 517
+R SLKPS LSGP T+AP LG AFL S HL PP+H YLTPL G+DAP T GY P
Sbjct: 1877 VRISLKPSCLSGPATIAPTRILGFAFLDSLHLKPPLHPYLTPL*GIDAPL**TRLGYFFP 1698
Query: 518 NPTT*LIFLGLSPRM*LI*DLANSRRSLVVMKFGPQYQPGTLTXXXXXXXXXXRKELATT 697
PTT*LIF G PRM* D AN RR+ VV K GPQY PG R TT
Sbjct: 1697 KPTT*LIFCGFLPRM*SSCDFANLRRTSVV*KLGPQYHPGVSAVSR*SAYREARNAALTT 1518
Query: 698 YCSGCPLPWLKSAIPP 745
Y SG PWL PP
Sbjct: 1517 Y*SG*GPPWLSCISPP 1470
Score = 73.9 bits (155), Expect(3) = 1e-088
Identities = 29/61 (47%), Positives = 37/61 (60%)
Frame = -2 / +1
Query: 925 DFXVFSWXXXLPGAQXXXXXXRMFLNPGYPYXXSLAGYHNATSLNMCMYFPGFAAFNFTX 746
++ VF+W LPG+Q R+FL+PGYPY L +HN T MC Y P F +FNFT
Sbjct: 1291 NYGVFTWDDKLPGSQVLLSRLRLFLSPGYPYEEILRTFHNQTDNVMCSYLPVFNSFNFTK 1470
Query: 745 G 743
G
Sbjct: 1471 G 1473
Score = 33.6 bits (67), Expect(3) = 4e-041
Identities = 17/35 (48%), Positives = 18/35 (51%)
Frame = +3 / -2
Query: 750 VKLKAAKPGKYMHMLRLVALW*PASXXSYG*PGLR 854
VKL GKY HM V LW + S G PGLR
Sbjct: 1466 VKLNELNTGKYEHMTLSVWLWNVLNISS*GYPGLR 1362
Score = 27.6 bits (54), Expect(3) = 1e-088
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -2 / +1
Query: 241 AVDKNTMFSAVPHNVP 194
++DKNT+FSAVP P
Sbjct: 1969 SIDKNTIFSAVPPMFP 2016
Score = 24.9 bits (48), Expect(3) = 4e-041
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3 / -2
Query: 195 GTLCGTAENMVFLS 236
G + GTAE MVFLS
Sbjct: 2015 GNIGGTAEKMVFLS 1974
>gb|BU985662.1|BU985662 HF08E02r HF Hordeum vulgare subsp. vulgare cDNA clone HF08E02
5-PRIME, mRNA sequence
Length = 583
Score = 249 bits (539), Expect(2) = 2e-081
Identities = 93/131 (70%), Positives = 111/131 (84%)
Frame = -3 / +3
Query: 747 KGGMALFNHGRGQPLQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQI 568
KGG+ NHG QPLQYVV +FLA+LYADY++ + PGWYCGPNF TT+ LR+FA+SQ+
Sbjct: 189 KGGLIQLNHGGPQPLQYVVNAAFLASLYADYLDTADTPGWYCGPNFYTTDVLRKFAKSQL 368
Query: 567 NYILGDNPKKMSYVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLLGG 388
+YILG NP+KMSYVVGFG KYP+ VHHRGAS PHNGVKY C GG+KWR+SKKA+PN+L G
Sbjct: 369 DYILGKNPQKMSYVVGFGKKYPKRVHHRGASIPHNGVKYGCKGGFKWRESKKANPNILVG 548
Query: 387 AMVGGPDKNDG 355
AMV GPDK+DG
Sbjct: 549 AMVAGPDKHDG 581
Score = 143 bits (307), Expect(2) = 1e-037
Identities = 71/131 (54%), Positives = 75/131 (57%)
Frame = +2 / -1
Query: 353 KPSFLSGPPTMAPPSRLGSAFLLSRHL*PPVHEYLTPLCGVDAPRWCTCRGYLLPNPTT* 532
KPS LSGP T+AP LG AFL S HL PP+H YLTPL G+DAP T GY P PTT*
Sbjct: 583 KPSCLSGPATIAPTRILGFAFLDSLHLKPPLHPYLTPL*GIDAPL**TRLGYFFPKPTT* 404
Query: 533 LIFLGLSPRM*LI*DLANSRRSLVVMKFGPQYQPGTLTXXXXXXXXXXRKELATTYCSGC 712
LIF G PRM* D AN RR+ VV K GPQY PG R TTY SG
Sbjct: 403 LIFCGFLPRM*SSCDFANLRRTSVV*KLGPQYHPGVSAVSR*SAYREARNAALTTY*SG* 224
Query: 713 PLPWLKSAIPP 745
PWL PP
Sbjct: 223 GPPWLSCISPP 191
Score = 73.9 bits (155), Expect(2) = 2e-081
Identities = 29/61 (47%), Positives = 37/61 (60%)
Frame = -2 / +3
Query: 925 DFXVFSWXXXLPGAQXXXXXXRMFLNPGYPYXXSLAGYHNATSLNMCMYFPGFAAFNFTX 746
++ VF+W LPG+Q R+FL+PGYPY L +HN T MC Y P F +FNFT
Sbjct: 12 NYGVFTWDDKLPGSQVLLSRLRLFLSPGYPYEEILRTFHNQTDNVMCSYLPVFNSFNFTK 191
Query: 745 G 743
G
Sbjct: 192 G 194
Score = 33.6 bits (67), Expect(2) = 1e-037
Identities = 17/35 (48%), Positives = 18/35 (51%)
Frame = +3 / -1
Query: 750 VKLKAAKPGKYMHMLRLVALW*PASXXSYG*PGLR 854
VKL GKY HM V LW + S G PGLR
Sbjct: 187 VKLNELNTGKYEHMTLSVWLWNVLNISS*GYPGLR 83
>gb|AV916435.1|AV916435 AV916435 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17d08 5', mRNA sequence
Length = 607
Score = 259 bits (560), Expect(2) = 2e-081
Identities = 98/142 (69%), Positives = 116/142 (81%)
Frame = -3 / +3
Query: 747 KGGMALFNHGRGQPLQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQI 568
KGG+ NHG QPLQYVV +FLA+LYADY++ + PGWYCGPNF TT+ LR+FA+SQ+
Sbjct: 180 KGGLIQLNHGGPQPLQYVVNAAFLASLYADYLDTADTPGWYCGPNFYTTDVLRKFAKSQL 359
Query: 567 NYILGDNPKKMSYVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLLGG 388
+YILG NP+KMSYVVGFG KYP+ VHHRGAS PHNGVKY C GG+KWR+SKKA+PN+L G
Sbjct: 360 DYILGKNPQKMSYVVGFGKKYPKRVHHRGASIPHNGVKYGCKGGFKWRESKKANPNILVG 539
Query: 387 AMVGGPDKNDGFKDSRNTSGRT 322
AMV GPDK+DGFKD R T
Sbjct: 540 AMVAGPDKHDGFKDIRTNYNYT 605
Score = 148 bits (318), Expect(2) = 4e-039
Identities = 74/136 (54%), Positives = 79/136 (58%)
Frame = +2 / -1
Query: 338 LRESLKPSFLSGPPTMAPPSRLGSAFLLSRHL*PPVHEYLTPLCGVDAPRWCTCRGYLLP 517
+R SLKPS LSGP T+AP LG AFL S HL PP+H YLTPL G+DAP T GY P
Sbjct: 589 VRISLKPSCLSGPATIAPTRILGFAFLDSLHLKPPLHPYLTPL*GIDAPL**TRLGYFFP 410
Query: 518 NPTT*LIFLGLSPRM*LI*DLANSRRSLVVMKFGPQYQPGTLTXXXXXXXXXXRKELATT 697
PTT*LIF G PRM* D AN RR+ VV K GPQY PG R TT
Sbjct: 409 KPTT*LIFCGFLPRM*SSCDFANLRRTSVV*KLGPQYHPGVSAVSR*SAYREARNAALTT 230
Query: 698 YCSGCPLPWLKSAIPP 745
Y SG PWL PP
Sbjct: 229 Y*SG*GPPWLSCISPP 182
Score = 63.8 bits (133), Expect(2) = 2e-081
Identities = 26/51 (50%), Positives = 31/51 (60%)
Frame = -2 / +3
Query: 895 LPGAQXXXXXXRMFLNPGYPYXXSLAGYHNATSLNMCMYFPGFAAFNFTXG 743
LPG+Q R+FL+PGYPY L +HN T MC Y P F +FNFT G
Sbjct: 33 LPGSQVLLSRLRLFLSPGYPYEEILRTFHNQTDNVMCSYLPVFNSFNFTKG 185
Score = 33.6 bits (67), Expect(2) = 4e-039
Identities = 17/35 (48%), Positives = 18/35 (51%)
Frame = +3 / -1
Query: 750 VKLKAAKPGKYMHMLRLVALW*PASXXSYG*PGLR 854
VKL GKY HM V LW + S G PGLR
Sbjct: 178 VKLNELNTGKYEHMTLSVWLWNVLNISS*GYPGLR 74
>gb|BQ765008.1|BQ765008 EBca01_SQ005_D16_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ005_D16 5', mRNA sequence
Length = 685
Score = 180 bits (387), Expect(2) = 4e-077
Identities = 68/83 (81%), Positives = 76/83 (91%)
Frame = -3 / +2
Query: 747 KGGMALFNHGRGQPLQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQI 568
KGG+A FNHG+GQ LQY VANSFLAALYADYME+VNVPGWYCGPNFMT +DLR FA+SQ+
Sbjct: 434 KGGLAQFNHGQGQALQYAVANSFLAALYADYMESVNVPGWYCGPNFMTVDDLRSFAKSQL 613
Query: 567 NYILGDNPKKMSYVVGFGSKYPR 499
NYILGDNP KMSYVVG+G KYP+
Sbjct: 614 NYILGDNPMKMSYVVGYGKKYPK 682
Score = 128 bits (275), Expect(2) = 4e-077
Identities = 53/77 (68%), Positives = 54/77 (70%)
Frame = -2 / +2
Query: 973 TDXRLPKXAKXXXNILDFXVFSWXXXLPGAQXXXXXXRMFLNPGYPYXXSLAGYHNATSL 794
TD RLPK AK NILDF VFSW LPGA RMFLNPGYPY SL GYHN TS+
Sbjct: 209 TDPRLPKNAKAYFNILDFSVFSWDNKLPGATLLLSRLRMFLNPGYPYEESLMGYHNVTSM 388
Query: 793 NMCMYFPGFAAFNFTXG 743
NMCMYFP F AFNFT G
Sbjct: 389 NMCMYFPKFNAFNFTKG 439
Score = 122 bits (260), Expect(2) = 2e-044
Identities = 54/81 (66%), Positives = 55/81 (67%)
Frame = +2 / -2
Query: 503 GYLLPNPTT*LIFLGLSPRM*LI*DLANSRRSLVVMKFGPQYQPGTLTXXXXXXXXXXRK 682
GY LP PTT*LIF+GLSPRM* *DLA RRS VMK GPQYQPGTLT RK
Sbjct: 678 GYFLPYPTT*LIFIGLSPRM*FS*DLAKERRSSTVMKLGPQYQPGTLTDSM*SA*SAARK 499
Query: 683 ELATTYCSGCPLPWLKSAIPP 745
ELAT YCS P PWL A PP
Sbjct: 498 ELATAYCSAWPWPWLNWASPP 436
Score = 119 bits (255), Expect(2) = 9e-038
Identities = 55/81 (67%), Positives = 62/81 (76%)
Frame = +1 / -1
Query: 505 VLAAEPNHVAHLLGVVTENVVDLRPGELTEVVGGHEVWTAVPAGDVDGLHVVGVERSEKG 684
VL A P+HVAHL V+ ++VV LR GE EVV GHEV AVPAGDVDGLHVVG++R E+G
Sbjct: 676 VLLAVPHHVAHLHRVIPKDVVQLRFGEGAEVVDGHEVGAAVPAGDVDGLHVVGIKRGEEG 497
Query: 685 VGDDVLQRLPPAVVEERHPAL 747
VGD VLQRL AVVE PAL
Sbjct: 496 VGDGVLQRLALAVVELGEPAL 434
Score = 92.7 bits (196), Expect(3) = 4e-029
Identities = 42/63 (66%), Positives = 48/63 (76%)
Frame = -2 / +1
Query: 685 LLSRCALRRLHGGRQRPRLVLRSKLHDHQRPP*VRQVSDQLHSR*QPQEDELRGWVRQQV 506
LL R AL RLHG RQRPRLVLR +LHD +RPP +RQ+S +LH P EDELRG VRQ+V
Sbjct: 496 LLPRRALCRLHGVRQRPRLVLRPQLHDRRRPPLLRQISAELHPWG*PDEDELRGGVRQEV 675
Query: 505 PTA 497
P A
Sbjct: 676 PEA 684
Score = 77.6 bits (163), Expect(2) = 2e-044
Identities = 40/75 (53%), Positives = 40/75 (53%)
Frame = +3 / -2
Query: 750 VKLKAAKPGKYMHMLRLVALW*PASXXSYG*PGLRNMXXXXXXXXXXXXXXXQLNTXKSR 929
VKL A GKYMHM LV LW P S S G*PGLRNM QL T KSR
Sbjct: 432 VKLNALNLGKYMHMFMLVTLWYPMSDSS*G*PGLRNMRSRDSSRVAPGSLLSQLKTEKSR 253
Query: 930 MLXXXLAXLGSRXSV 974
ML LA LGS SV
Sbjct: 252 MLK*ALAFLGSLGSV 208
Score = 57.9 bits (120), Expect(2) = 9e-038
Identities = 26/37 (70%), Positives = 27/37 (72%)
Frame = +2 / -1
Query: 863 QPRQQQLGARELXXPAEHXEVEDVXXXLGVLGQPXVG 973
QPRQQQ GA EL PAE EVEDV LGVLG+P VG
Sbjct: 319 QPRQQQGGAGELVVPAEDGEVEDVEVGLGVLGEPGVG 209
Score = 43.7 bits (89), Expect(3) = 4e-029
Identities = 19/40 (47%), Positives = 19/40 (47%)
Frame = -3 / +3
Query: 984 SXXXPTXGCPXTPRXXXXXXXXXXSAGXXSSRAPSCCXRG 865
S PT G P TPR SAG SS AP CC RG
Sbjct: 198 SASPPTPGSPRTPRPTSTSSTSPSSAGTTSSPAPPCCCRG 317
Score = 29.9 bits (59), Expect(3) = 4e-029
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -1 / +1
Query: 803 HQPQHVHVLSGLRRLQLH 750
HQ +HVHV ++R+QLH
Sbjct: 379 HQHEHVHVFPQVQRVQLH 432
>gb|AV923747.1|AV923747 AV923747 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1e17 5', mRNA sequence
Length = 507
Score = 252 bits (545), Expect(2) = 8e-077
Identities = 94/132 (71%), Positives = 112/132 (84%)
Frame = -3 / +1
Query: 747 KGGMALFNHGRGQPLQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQI 568
KGG+ NHG QPLQYVV +FLA+LYADY++ + PGWYCGPNF TT+ LR+FA+SQ+
Sbjct: 112 KGGLIQLNHGGPQPLQYVVNAAFLASLYADYLDTADTPGWYCGPNFYTTDVLRKFAKSQL 291
Query: 567 NYILGDNPKKMSYVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLLGG 388
+YILG NP+KMSYVVGFG KYP+ VHHRGAS PHNGVKY C GG+KWR+SKKA+PN+L G
Sbjct: 292 DYILGKNPQKMSYVVGFGKKYPKRVHHRGASIPHNGVKYGCKGGFKWRESKKANPNILVG 471
Query: 387 AMVGGPDKNDGF 352
AMV GPDK+DGF
Sbjct: 472 AMVAGPDKHDGF 507
Score = 143 bits (307), Expect(2) = 1e-037
Identities = 71/131 (54%), Positives = 75/131 (57%)
Frame = +2 / -2
Query: 353 KPSFLSGPPTMAPPSRLGSAFLLSRHL*PPVHEYLTPLCGVDAPRWCTCRGYLLPNPTT* 532
KPS LSGP T+AP LG AFL S HL PP+H YLTPL G+DAP T GY P PTT*
Sbjct: 506 KPSCLSGPATIAPTRILGFAFLDSLHLKPPLHPYLTPL*GIDAPL**TRLGYFFPKPTT* 327
Query: 533 LIFLGLSPRM*LI*DLANSRRSLVVMKFGPQYQPGTLTXXXXXXXXXXRKELATTYCSGC 712
LIF G PRM* D AN RR+ VV K GPQY PG R TTY SG
Sbjct: 326 LIFCGFLPRM*SSCDFANLRRTSVV*KLGPQYHPGVSAVSR*SAYREARNAALTTY*SG* 147
Query: 713 PLPWLKSAIPP 745
PWL PP
Sbjct: 146 GPPWLSCISPP 114
Score = 55.6 bits (115), Expect(2) = 8e-077
Identities = 21/39 (53%), Positives = 25/39 (64%)
Frame = -2 / +1
Query: 859 MFLNPGYPYXXSLAGYHNATSLNMCMYFPGFAAFNFTXG 743
+FL+PGYPY L +HN T MC Y P F +FNFT G
Sbjct: 1 VFLSPGYPYEEILRTFHNQTDNVMCSYLPVFNSFNFTKG 117
Score = 33.6 bits (67), Expect(2) = 1e-037
Identities = 17/35 (48%), Positives = 18/35 (51%)
Frame = +3 / -2
Query: 750 VKLKAAKPGKYMHMLRLVALW*PASXXSYG*PGLR 854
VKL GKY HM V LW + S G PGLR
Sbjct: 110 VKLNELNTGKYEHMTLSVWLWNVLNISS*GYPGLR 6
>gb|AW983004.3|AW983004 HVSMEg0004M14f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0004M14f, mRNA sequence
Length = 562
Score = 264 bits (572), Expect(2) = 3e-074
Identities = 101/151 (66%), Positives = 120/151 (79%)
Frame = -3 / +1
Query: 747 KGGMALFNHGRGQPLQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQI 568
KGG+ NHG QPLQYVV +FLA+LYADY++ + PGWYCGPNF TT+ LR+FA+SQ+
Sbjct: 64 KGGLIQLNHGGPQPLQYVVNAAFLASLYADYLDTADTPGWYCGPNFYTTDVLRKFAKSQL 243
Query: 567 NYILGDNPKKMSYVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLLGG 388
+YILG NP+KMSYVVGFG KYP+ VHHRGAS PHNGVKY C GG+KWR+SKKA+PN+L G
Sbjct: 244 DYILGKNPQKMSYVVGFGKKYPKRVHHRGASIPHNGVKYGCKGGFKWRESKKANPNILVG 423
Query: 387 AMVGGPDKNDGFKDSRNTSGRTSRRWSGNAG 295
AMV GPDK+DGFKD R T + NAG
Sbjct: 424 AMVAGPDKHDGFKDIRTNYNYTKPTLAANAG 516
Score = 148 bits (318), Expect = 5e-035
Identities = 74/136 (54%), Positives = 79/136 (58%)
Frame = +2 / -3
Query: 338 LRESLKPSFLSGPPTMAPPSRLGSAFLLSRHL*PPVHEYLTPLCGVDAPRWCTCRGYLLP 517
+R SLKPS LSGP T+AP LG AFL S HL PP+H YLTPL G+DAP T GY P
Sbjct: 473 VRISLKPSCLSGPATIAPTRILGFAFLDSLHLKPPLHPYLTPL*GIDAPL**TRLGYFFP 294
Query: 518 NPTT*LIFLGLSPRM*LI*DLANSRRSLVVMKFGPQYQPGTLTXXXXXXXXXXRKELATT 697
PTT*LIF G PRM* D AN RR+ VV K GPQY PG R TT
Sbjct: 293 KPTT*LIFCGFLPRM*SSCDFANLRRTSVV*KLGPQYHPGVSAVSR*SAYREARNAALTT 114
Query: 698 YCSGCPLPWLKSAIPP 745
Y SG PWL PP
Sbjct: 113 Y*SG*GPPWLSCISPP 66
Score = 34.5 bits (69), Expect(2) = 3e-074
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -2 / +1
Query: 811 HNATSLNMCMYFPGFAAFNFTXG 743
HN T MC Y P F +FNFT G
Sbjct: 1 HNQTDNVMCSYLPVFNSFNFTKG 69
>gb|BE601584.3|BE601584 HVSMEh0098M02f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0098M02f, mRNA sequence
Length = 641
Score = 264 bits (572), Expect(2) = 1e-070
Identities = 101/151 (66%), Positives = 120/151 (79%)
Frame = -3 / +1
Query: 747 KGGMALFNHGRGQPLQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQI 568
KGG+ NHG QPLQYVV +FLA+LYADY++ + PGWYCGPNF TT+ LR+FA+SQ+
Sbjct: 19 KGGLIQLNHGGPQPLQYVVNAAFLASLYADYLDTADTPGWYCGPNFYTTDVLRKFAKSQL 198
Query: 567 NYILGDNPKKMSYVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLLGG 388
+YILG NP+KMSYVVGFG KYP+ VHHRGAS PHNGVKY C GG+KWR+SKKA+PN+L G
Sbjct: 199 DYILGKNPQKMSYVVGFGKKYPKRVHHRGASIPHNGVKYGCKGGFKWRESKKANPNILVG 378
Query: 387 AMVGGPDKNDGFKDSRNTSGRTSRRWSGNAG 295
AMV GPDK+DGFKD R T + NAG
Sbjct: 379 AMVAGPDKHDGFKDIRTNYNYTEPTLAANAG 471
Score = 148 bits (318), Expect = 5e-035
Identities = 74/136 (54%), Positives = 79/136 (58%)
Frame = +2 / -1
Query: 338 LRESLKPSFLSGPPTMAPPSRLGSAFLLSRHL*PPVHEYLTPLCGVDAPRWCTCRGYLLP 517
+R SLKPS LSGP T+AP LG AFL S HL PP+H YLTPL G+DAP T GY P
Sbjct: 428 VRISLKPSCLSGPATIAPTRILGFAFLDSLHLKPPLHPYLTPL*GIDAPL**TRLGYFFP 249
Query: 518 NPTT*LIFLGLSPRM*LI*DLANSRRSLVVMKFGPQYQPGTLTXXXXXXXXXXRKELATT 697
PTT*LIF G PRM* D AN RR+ VV K GPQY PG R TT
Sbjct: 248 KPTT*LIFCGFLPRM*SSCDFANLRRTSVV*KLGPQYHPGVSAVSR*SAYREARNAALTT 69
Query: 698 YCSGCPLPWLKSAIPP 745
Y SG PWL PP
Sbjct: 68 Y*SG*GPPWLSCISPP 21
Score = 22.6 bits (43), Expect(2) = 1e-070
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -2 / +1
Query: 241 AVDKNTMFSAVP 206
++ KNT+FSAVP
Sbjct: 520 SIYKNTIFSAVP 555
>gb|BM097444.2|BM097444 EBro05_SQ003_F03_R root, 3 week, reduced light, cv Optic, EBro05
Hordeum vulgare subsp. vulgare cDNA clone
EBro05_SQ003_F03 5', mRNA sequence
Length = 499
Score = 264 bits (572), Expect = 4e-070
Identities = 101/151 (66%), Positives = 120/151 (79%)
Frame = -3 / +1
Query: 747 KGGMALFNHGRGQPLQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQI 568
KGG+ NHG QPLQYVV +FLA+LYADY++ + PGWYCGPNF TT+ LR+FA+SQ+
Sbjct: 13 KGGLIQLNHGGPQPLQYVVNAAFLASLYADYLDTADTPGWYCGPNFYTTDVLRKFAKSQL 192
Query: 567 NYILGDNPKKMSYVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLLGG 388
+YILG NP+KMSYVVGFG KYP+ VHHRGAS PHNGVKY C GG+KWR+SKKA+PN+L G
Sbjct: 193 DYILGKNPQKMSYVVGFGKKYPKRVHHRGASIPHNGVKYGCKGGFKWRESKKANPNILVG 372
Query: 387 AMVGGPDKNDGFKDSRNTSGRTSRRWSGNAG 295
AMV GPDK+DGFKD R T + NAG
Sbjct: 373 AMVAGPDKHDGFKDIRTNYNYTEPTLAANAG 465
Score = 148 bits (318), Expect = 5e-035
Identities = 74/136 (54%), Positives = 79/136 (58%)
Frame = +2 / -3
Query: 338 LRESLKPSFLSGPPTMAPPSRLGSAFLLSRHL*PPVHEYLTPLCGVDAPRWCTCRGYLLP 517
+R SLKPS LSGP T+AP LG AFL S HL PP+H YLTPL G+DAP T GY P
Sbjct: 422 VRISLKPSCLSGPATIAPTRILGFAFLDSLHLKPPLHPYLTPL*GIDAPL**TRLGYFFP 243
Query: 518 NPTT*LIFLGLSPRM*LI*DLANSRRSLVVMKFGPQYQPGTLTXXXXXXXXXXRKELATT 697
PTT*LIF G PRM* D AN RR+ VV K GPQY PG R TT
Sbjct: 242 KPTT*LIFCGFLPRM*SSCDFANLRRTSVV*KLGPQYHPGVSAVSR*SAYREARNAALTT 63
Query: 698 YCSGCPLPWLKSAIPP 745
Y SG PWL PP
Sbjct: 62 Y*SG*GPPWLSCISPP 15
>gb|BG418595.1|BG418595 HVSMEk0023G06f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0023G06f, mRNA sequence
Length = 815
Score = 257 bits (556), Expect(2) = 6e-070
Identities = 98/144 (68%), Positives = 116/144 (80%)
Frame = -3 / +3
Query: 726 NHGRGQPLQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQINYILGDN 547
NHG QPLQYVV +FLA+LYADY++ + PGWYCGPNF TT+ LR+FA+SQ++YILG N
Sbjct: 9 NHGGPQPLQYVVNAAFLASLYADYLDTADTPGWYCGPNFYTTDVLRKFAKSQLDYILGKN 188
Query: 546 PKKMSYVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLLGGAMVGGPD 367
P+KMSYVVGFG KYP+ VHHRGAS PHNGVKY C GG+KWR+SKKA+PN+L GAMV GPD
Sbjct: 189 PQKMSYVVGFGKKYPKRVHHRGASIPHNGVKYGCKGGFKWRESKKANPNILVGAMVAGPD 368
Query: 366 KNDGFKDSRNTSGRTSRRWSGNAG 295
K+DGFKD R T + NAG
Sbjct: 369 KHDGFKDIRTNYNYTEPTLAANAG 440
Score = 144 bits (308), Expect(2) = 3e-035
Identities = 72/130 (55%), Positives = 77/130 (59%)
Frame = +2 / -2
Query: 338 LRESLKPSFLSGPPTMAPPSRLGSAFLLSRHL*PPVHEYLTPLCGVDAPRWCTCRGYLLP 517
+R SLKPS LSGP T+AP LG AFL S HL PP+H YLTPL G+DAP T GY P
Sbjct: 397 VRISLKPSCLSGPATIAPTRILGFAFLDSLHLKPPLHPYLTPL*GIDAPL**TRLGYFFP 218
Query: 518 NPTT*LIFLGLSPRM*LI*DLANSRRSLVVMKFGPQYQPGTLTXXXXXXXXXXRKELATT 697
PTT*LIF G PRM* D AN RR+ VV K GPQY PG R TT
Sbjct: 217 KPTT*LIFCGFLPRM*SSCDFANLRRTSVV*KLGPQYHPGVSAVSR*SAYREARNAALTT 38
Query: 698 YCSGCPLPWL 727
Y SG PWL
Sbjct: 37 Y*SG*GPPWL 8
Score = 27.6 bits (54), Expect(2) = 6e-070
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -2 / +3
Query: 241 AVDKNTMFSAVPHNVP 194
++DKNT+FSAVP P
Sbjct: 489 SIDKNTIFSAVPPMFP 536
Score = 24.9 bits (48), Expect(2) = 3e-035
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3 / -2
Query: 195 GTLCGTAENMVFLS 236
G + GTAE MVFLS
Sbjct: 535 GNIGGTAEKMVFLS 494
>gb|BU994975.1|BU994975 HM08M21r HM Hordeum vulgare subsp. vulgare cDNA clone HM08M21
5-PRIME, mRNA sequence
Length = 537
Score = 245 bits (529), Expect(2) = 5e-068
Identities = 94/134 (70%), Positives = 109/134 (81%)
Frame = -3 / +2
Query: 654 MEAVNVPGWYCGPNFMTTNDLREFARSQINYILGDNPKKMSYVVGFGSKYPRHVHHRGAS 475
ME+VNVPGWYCGPNFMT +DLR FA+SQ+NYILGDNP KMSYVVG+G KYP+ +HHRGAS
Sbjct: 68 MESVNVPGWYCGPNFMTVDDLRSFAKSQLNYILGDNPMKMSYVVGYGKKYPKRLHHRGAS 247
Query: 474 TPHNGVKYSCTGGYKWRDSKKADPNLLGGAMVGGPDKNDGFKDSRNTSGRTSRRWSGNAG 295
TP NG+KYSCTGG KWRDSKKADP++L GAMVGGPDKND FKD+R + + GNAG
Sbjct: 248 TPKNGIKYSCTGGNKWRDSKKADPHVLTGAMVGGPDKNDKFKDARISYAQNEPTLVGNAG 427
Query: 294 XXXXXXXLTSSGRG 253
+T+SGRG
Sbjct: 428 LVAALVAITNSGRG 469
Score = 175 bits (377), Expect(2) = 4e-047
Identities = 77/100 (77%), Positives = 79/100 (79%)
Frame = +2 / -1
Query: 347 SLKPSFLSGPPTMAPPSRLGSAFLLSRHL*PPVHEYLTPLCGVDAPRWCTCRGYLLPNPT 526
SL SFLSGPPTMAP S GSAFL SRHL PPVHEYL P GVDAPRWC+ GY LP PT
Sbjct: 375 SLNLSFLSGPPTMAPVST*GSAFLESRHLLPPVHEYLIPFLGVDAPRWCSRFGYFLPYPT 196
Query: 527 T*LIFLGLSPRM*LI*DLANSRRSLVVMKFGPQYQPGTLT 646
T*LIF+GLSPRM* *DLA RRS VMK GPQYQPGTLT
Sbjct: 195 T*LIFIGLSPRM*FS*DLAKERRSSTVMKLGPQYQPGTLT 76
Score = 123 bits (264), Expect(2) = 8e-028
Identities = 59/93 (63%), Positives = 66/93 (70%)
Frame = +1 / -3
Query: 376 ADHGXPQQVGVRFLAVAPLVAAGARVLDAVVRRGRATVVHVPWVLAAEPNHVAHLLGVVT 555
ADHG + V V L +APLVAAGARVLD V+ R R TVV VL A P+HVAHL V+
Sbjct: 346 ADHGAREHVRVCLLGIAPLVAAGARVLDPVLGRRRPTVVQPLRVLLAVPHHVAHLHRVIP 167
Query: 556 ENVVDLRPGELTEVVGGHEVWTAVPAGDVDGLH 654
++VV LR GE EVV GHEV AVPAGDVDGLH
Sbjct: 166 KDVVQLRFGEGAEVVDGHEVGAAVPAGDVDGLH 68
Score = 95.9 bits (203), Expect(3) = 1e-030
Identities = 40/60 (66%), Positives = 46/60 (76%)
Frame = -2 / +1
Query: 655 HGGRQRPRLVLRSKLHDHQRPP*VRQVSDQLHSR*QPQEDELRGWVRQQVPTARAPPWRV 476
HG RQRPRLVLR +LHD +RPP +RQ+S +LH P EDELRG VRQ+VP A APPW V
Sbjct: 67 HGVRQRPRLVLRPQLHDRRRPPLLRQISAELHPWG*PDEDELRGGVRQEVPEAAAPPWGV 246
Score = 43.7 bits (89), Expect(3) = 1e-030
Identities = 21/47 (44%), Positives = 22/47 (46%)
Frame = -2 / +2
Query: 334 FGQNEPTLVXXXXXXXXXXXXXXXXXXXSVTAVDKNTMFSAVPHNVP 194
+ QNEPTLV V AVDKNTMFSAVP P
Sbjct: 389 YAQNEPTLVGNAGLVAALVAITNSGRGRGVGAVDKNTMFSAVPPMFP 529
Score = 33.6 bits (67), Expect(2) = 5e-068
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -1 / +1
Query: 242 RRRQEHHVLRRAA 204
RRRQEHHVLRRAA
Sbjct: 481 RRRQEHHVLRRAA 519
Score = 33.1 bits (66), Expect(2) = 4e-047
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +3 / -1
Query: 195 GTLCGTAENMVFLSTAVT 248
G + GTAENMVFLSTA T
Sbjct: 528 GNMGGTAENMVFLSTAPT 475
Score = 32.2 bits (64), Expect(3) = 1e-030
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -2 / +1
Query: 415 ESGPQPAGGXHGRRARQERRLQG 347
E P A G HGRR QER++QG
Sbjct: 307 EGRPSRAHGRHGRRPGQERQVQG 375
Score = 22.6 bits (43), Expect(2) = 8e-028
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +2 / -3
Query: 218 EHGVLVDG 241
EHGVLVDG
Sbjct: 505 EHGVLVDG 482
>gb|AW982232.3|AW982232 HVSMEg0002G13f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0002G13f, mRNA sequence
Length = 850
Score = 248 bits (535), Expect(2) = 4e-067
Identities = 94/138 (68%), Positives = 112/138 (81%)
Frame = -3 / +3
Query: 708 PLQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQINYILGDNPKKMSY 529
PLQYVV +FLA+LYADY++ + PGWYCGPNF TT+ LR+FA+SQ++YILG NP+KMSY
Sbjct: 3 PLQYVVNAAFLASLYADYLDTADTPGWYCGPNFYTTDVLRKFAKSQLDYILGKNPQKMSY 182
Query: 528 VVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLLGGAMVGGPDKNDGFK 349
VVGFG KYP+ VHHRGAS PHNGVKY C GG+KWR+SKKA+PN+L GAMV GPDK+DGFK
Sbjct: 183 VVGFGKKYPKRVHHRGASIPHNGVKYGCKGGFKWRESKKANPNILVGAMVAGPDKHDGFK 362
Query: 348 DSRNTSGRTSRRWSGNAG 295
D R T + NAG
Sbjct: 363 DIRTNYNYTEPTLAANAG 416
Score = 138 bits (295), Expect(2) = 2e-033
Identities = 69/124 (55%), Positives = 74/124 (59%)
Frame = +2 / -1
Query: 338 LRESLKPSFLSGPPTMAPPSRLGSAFLLSRHL*PPVHEYLTPLCGVDAPRWCTCRGYLLP 517
+R SLKPS LSGP T+AP LG AFL S HL PP+H YLTPL G+DAP T GY P
Sbjct: 373 VRISLKPSCLSGPATIAPTRILGFAFLDSLHLKPPLHPYLTPL*GIDAPL**TRLGYFFP 194
Query: 518 NPTT*LIFLGLSPRM*LI*DLANSRRSLVVMKFGPQYQPGTLTXXXXXXXXXXRKELATT 697
PTT*LIF G PRM* D AN RR+ VV K GPQY PG R TT
Sbjct: 193 KPTT*LIFCGFLPRM*SSCDFANLRRTSVV*KLGPQYHPGVSAVSR*SAYREARNAALTT 14
Query: 698 YCSG 709
Y SG
Sbjct: 13 Y*SG 2
Score = 27.6 bits (54), Expect(2) = 4e-067
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -2 / +3
Query: 241 AVDKNTMFSAVPHNVP 194
++DKNT+FSAVP P
Sbjct: 465 SIDKNTIFSAVPPMFP 512
Score = 24.9 bits (48), Expect(2) = 2e-033
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3 / -1
Query: 195 GTLCGTAENMVFLS 236
G + GTAE MVFLS
Sbjct: 511 GNIGGTAEKMVFLS 470
>gb|BU967340.1|BU967340 HB03P20r BC Hordeum vulgare subsp. vulgare cDNA clone HB03P20
5-PRIME, mRNA sequence
Length = 523
Score = 142 bits (304), Expect(2) = 1e-065
Identities = 54/65 (83%), Positives = 60/65 (92%)
Frame = -3 / +2
Query: 747 KGGMALFNHGRGQPLQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQI 568
KGG+A FNHG+GQ LQY VANSFLAALYADYME+VNVPGWYCGPNFMT +DLR FA+SQ+
Sbjct: 329 KGGLAQFNHGQGQALQYAVANSFLAALYADYMESVNVPGWYCGPNFMTVDDLRSFAKSQL 508
Query: 567 NYILG 553
NYILG
Sbjct: 509 NYILG 523
Score = 128 bits (275), Expect(2) = 1e-065
Identities = 53/77 (68%), Positives = 54/77 (70%)
Frame = -2 / +2
Query: 973 TDXRLPKXAKXXXNILDFXVFSWXXXLPGAQXXXXXXRMFLNPGYPYXXSLAGYHNATSL 794
TD RLPK AK NILDF VFSW LPGA RMFLNPGYPY SL GYHN TS+
Sbjct: 104 TDPRLPKNAKAYFNILDFSVFSWDNKLPGATLLLSRLRMFLNPGYPYEESLMGYHNVTSM 283
Query: 793 NMCMYFPGFAAFNFTXG 743
NMCMYFP F AFNFT G
Sbjct: 284 NMCMYFPKFNAFNFTKG 334
Score = 95.5 bits (202), Expect(2) = 2e-036
Identities = 44/64 (68%), Positives = 49/64 (76%)
Frame = +1 / -1
Query: 556 ENVVDLRPGELTEVVGGHEVWTAVPAGDVDGLHVVGVERSEKGVGDDVLQRLPPAVVEER 735
++VV LR GE EVV GHEV AVPAGDVDGLHVVG++R E+GVG VLQRL AVVE
Sbjct: 520 KDVVQLRFGEGAEVVXGHEVGAAVPAGDVDGLHVVGIKRGEEGVGXGVLQRLALAVVELG 341
Query: 736 HPAL 747
PAL
Sbjct: 340 EPAL 329
Score = 90.0 bits (190), Expect(2) = 6e-029
Identities = 40/64 (62%), Positives = 40/64 (62%)
Frame = +2 / -2
Query: 554 PRM*LI*DLANSRRSLVVMKFGPQYQPGTLTXXXXXXXXXXRKELATTYCSGCPLPWLKS 733
PRM* *DLA RRS VMK GPQYQPGTLT RKELAT YCS P PWL
Sbjct: 522 PRM*FS*DLAKERRSSTVMKLGPQYQPGTLTDSM*SA*SAARKELATAYCSAWPWPWLNW 343
Query: 734 AIPP 745
A PP
Sbjct: 342 ASPP 331
Score = 77.6 bits (163), Expect(2) = 2e-036
Identities = 40/75 (53%), Positives = 40/75 (53%)
Frame = +3 / -2
Query: 750 VKLKAAKPGKYMHMLRLVALW*PASXXSYG*PGLRNMXXXXXXXXXXXXXXXQLNTXKSR 929
VKL A GKYMHM LV LW P S S G*PGLRNM QL T KSR
Sbjct: 327 VKLNALNLGKYMHMFMLVTLWYPMSDSS*G*PGLRNMRSRDSSRVAPGSLLSQLKTEKSR 148
Query: 930 MLXXXLAXLGSRXSV 974
ML LA LGS SV
Sbjct: 147 MLK*ALAFLGSLGSV 103
Score = 67.0 bits (140), Expect(3) = 3e-021
Identities = 29/42 (69%), Positives = 33/42 (78%)
Frame = -2 / +1
Query: 685 LLSRCALRRLHGGRQRPRLVLRSKLHDHQRPP*VRQVSDQLH 560
LL R AL RLHG RQRPRLVLR +LHD RPP +RQ+S +LH
Sbjct: 391 LLPRRALCRLHGVRQRPRLVLRPQLHDRXRPPLLRQISAELH 516
Score = 57.9 bits (120), Expect(2) = 6e-029
Identities = 26/37 (70%), Positives = 27/37 (72%)
Frame = +2 / -1
Query: 863 QPRQQQLGARELXXPAEHXEVEDVXXXLGVLGQPXVG 973
QPRQQQ GA EL PAE EVEDV LGVLG+P VG
Sbjct: 214 QPRQQQGGAGELVVPAEDGEVEDVEVGLGVLGEPGVG 104
Score = 42.8 bits (87), Expect(3) = 3e-021
Identities = 18/36 (50%), Positives = 18/36 (50%)
Frame = -3 / +3
Query: 972 PTXGCPXTPRXXXXXXXXXXSAGXXSSRAPSCCXRG 865
PT G P TPR SAG SS AP CC RG
Sbjct: 105 PTPGSPRTPRPTSTSSTSPSSAGTTSSPAPPCCCRG 212
Score = 29.9 bits (59), Expect(3) = 3e-021
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -1 / +1
Query: 803 HQPQHVHVLSGLRRLQLH 750
HQ +HVHV ++R+QLH
Sbjct: 274 HQHEHVHVFPQVQRVQLH 327
>gb|BQ768653.1|BQ768653 EBro08_SQ012_F07_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ012_F07 5', mRNA sequence
Length = 408
Score = 248 bits (536), Expect = 4e-065
Identities = 95/135 (70%), Positives = 110/135 (81%)
Frame = -3 / +3
Query: 669 LYADYMEAVNVPGWYCGPNFMTTNDLREFARSQINYILGDNPKKMSYVVGFGSKYPRHVH 490
LYADYME+VNVPGWYCGPNFMT +DLR FA+SQ+NYILGDNP KMSYVVG+G KYP+ +H
Sbjct: 3 LYADYMESVNVPGWYCGPNFMTVDDLRSFAKSQLNYILGDNPMKMSYVVGYGKKYPKRLH 182
Query: 489 HRGASTPHNGVKYSCTGGYKWRDSKKADPNLLGGAMVGGPDKNDGFKDSRNTSGRTSRRW 310
HRGASTP NG+KYSCTGG KWRDSKKADP++L GAMVGGPDKND FKD+R + +
Sbjct: 183 HRGASTPKNGIKYSCTGGNKWRDSKKADPHVLTGAMVGGPDKNDKFKDARISYAQNEPTL 362
Query: 309 SGNAGXXXXXXXLTS 265
GNAG +T+
Sbjct: 363 VGNAGLVAALVAITN 407
Score = 175 bits (377), Expect = 3e-043
Identities = 77/100 (77%), Positives = 79/100 (79%)
Frame = +2 / -3
Query: 347 SLKPSFLSGPPTMAPPSRLGSAFLLSRHL*PPVHEYLTPLCGVDAPRWCTCRGYLLPNPT 526
SL SFLSGPPTMAP S GSAFL SRHL PPVHEYL P GVDAPRWC+ GY LP PT
Sbjct: 325 SLNLSFLSGPPTMAPVST*GSAFLESRHLLPPVHEYLIPFLGVDAPRWCSRFGYFLPYPT 146
Query: 527 T*LIFLGLSPRM*LI*DLANSRRSLVVMKFGPQYQPGTLT 646
T*LIF+GLSPRM* *DLA RRS VMK GPQYQPGTLT
Sbjct: 145 T*LIFIGLSPRM*FS*DLAKERRSSTVMKLGPQYQPGTLT 26
Score = 132 bits (282), Expect = 4e-030
Identities = 62/98 (63%), Positives = 71/98 (72%)
Frame = +1 / -2
Query: 376 ADHGXPQQVGVRFLAVAPLVAAGARVLDAVVRRGRATVVHVPWVLAAEPNHVAHLLGVVT 555
ADHG + V V L +APLVAAGARVLD V+ R R TVV VL A P+HVAHL V+
Sbjct: 296 ADHGAREHVRVCLLGIAPLVAAGARVLDPVLGRRRPTVVQPLRVLLAVPHHVAHLHRVIP 117
Query: 556 ENVVDLRPGELTEVVGGHEVWTAVPAGDVDGLHVVGVE 669
++VV LR GE EVV GHEV AVPAGDVDGLHVVG++
Sbjct: 116 KDVVQLRFGEGAEVVDGHEVGAAVPAGDVDGLHVVGIK 3
Score = 102 bits (217), Expect(2) = 6e-025
Identities = 44/65 (67%), Positives = 50/65 (76%)
Frame = -2 / +2
Query: 670 ALRRLHGGRQRPRLVLRSKLHDHQRPP*VRQVSDQLHSR*QPQEDELRGWVRQQVPTARA 491
AL RLHG RQRPRLVLR +LHD +RPP +RQ+S +LH P EDELRG VRQ+VP A A
Sbjct: 2 ALCRLHGVRQRPRLVLRPQLHDRRRPPLLRQISAELHPWG*PDEDELRGGVRQEVPEAAA 181
Query: 490 PPWRV 476
PPW V
Sbjct: 182 PPWGV 196
Score = 32.2 bits (64), Expect(2) = 6e-025
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -2 / +2
Query: 415 ESGPQPAGGXHGRRARQERRLQG 347
E P A G HGRR QER++QG
Sbjct: 257 EGRPSRAHGRHGRRPGQERQVQG 325
>gb|BE603205.3|BE603205 HVSMEh0102H23f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0102H23f, mRNA sequence
Length = 726
Score = 183 bits (394), Expect(2) = 1e-061
Identities = 71/117 (60%), Positives = 90/117 (76%)
Frame = -3 / +1
Query: 747 KGGMALFNHGRGQPLQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQI 568
KGG+ NHG QPLQYVV +FLA+LYADY++ + PGWYCGPNF TT+ LR+FA+SQ+
Sbjct: 343 KGGLIQLNHGGPQPLQYVVNAAFLASLYADYLDTADTPGWYCGPNFYTTDVLRKFAKSQL 522
Query: 567 NYILGDNPKKMSYVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNL 397
+YILG NP+KM+YVVGFG K P+ VH+R AS P+NGVKY C GG+ + K+ P L
Sbjct: 523 DYILGKNPQKMNYVVGFGKK*PKRVHYRRASIPYNGVKYGCKGGF*MERA*KSKPLL 693
Score = 103 bits (219), Expect(2) = 1e-025
Identities = 51/103 (49%), Positives = 54/103 (52%)
Frame = +2 / -2
Query: 437 PPVHEYLTPLCGVDAPRWCTCRGYLLPNPTT*LIFLGLSPRM*LI*DLANSRRSLVVMKF 616
PP+H YLTPL G+DA T GY P PTT* IF G PRM* D AN RR+ VV K
Sbjct: 653 PPLHPYLTPL*GIDALL**TRLGYFFPKPTT*FIFCGFLPRM*SSCDFANLRRTSVV*KL 474
Query: 617 GPQYQPGTLTXXXXXXXXXXRKELATTYCSGCPLPWLKSAIPP 745
GPQY PG R TTY SG PWL PP
Sbjct: 473 GPQYHPGVSAVSR*SAYREARNAALTTY*SG*GPPWLSCISPP 345
Score = 73.9 bits (155), Expect(2) = 1e-061
Identities = 29/61 (47%), Positives = 37/61 (60%)
Frame = -2 / +1
Query: 925 DFXVFSWXXXLPGAQXXXXXXRMFLNPGYPYXXSLAGYHNATSLNMCMYFPGFAAFNFTX 746
++ VF+W LPG+Q R+FL+PGYPY L +HN T MC Y P F +FNFT
Sbjct: 166 NYGVFTWDDKLPGSQVLLSRLRLFLSPGYPYEEILRTFHNQTDNVMCSYLPVFNSFNFTK 345
Query: 745 G 743
G
Sbjct: 346 G 348
Score = 33.6 bits (67), Expect(2) = 1e-025
Identities = 17/35 (48%), Positives = 18/35 (51%)
Frame = +3 / -2
Query: 750 VKLKAAKPGKYMHMLRLVALW*PASXXSYG*PGLR 854
VKL GKY HM V LW + S G PGLR
Sbjct: 341 VKLNELNTGKYEHMTLSVWLWNVLNISS*GYPGLR 237
>gb|AV927273.1|AV927273 AV927273 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1e17 3', mRNA sequence
Length = 684
Score = 226 bits (488), Expect(2) = 1e-060
Identities = 84/124 (67%), Positives = 100/124 (80%)
Frame = -3 / -3
Query: 666 YADYMEAVNVPGWYCGPNFMTTNDLREFARSQINYILGDNPKKMSYVVGFGSKYPRHVHH 487
YADY++ + PGWYCGPNF TT+ LR+FA+SQ++YILG NP+KMSYVVGFG KYP+ VHH
Sbjct: 682 YADYLDTADTPGWYCGPNFYTTDVLRKFAKSQLDYILGKNPQKMSYVVGFGKKYPKRVHH 503
Query: 486 RGASTPHNGVKYSCTGGYKWRDSKKADPNLLGGAMVGGPDKNDGFKDSRNTSGRTSRRWS 307
RGAS PHNGVKY C GG+KWR+SKKA+PN+L GAMV GPDK+DGFKD R T +
Sbjct: 502 RGASIPHNGVKYGCKGGFKWRESKKANPNILVGAMVAGPDKHDGFKDIRTNYNYTEPTLA 323
Query: 306 GNAG 295
NAG
Sbjct: 322 ANAG 311
Score = 131 bits (281), Expect(2) = 2e-031
Identities = 63/100 (63%), Positives = 68/100 (68%)
Frame = +2 / +3
Query: 338 LRESLKPSFLSGPPTMAPPSRLGSAFLLSRHL*PPVHEYLTPLCGVDAPRWCTCRGYLLP 517
+R SLKPS LSGP T+AP LG AFL S HL PP+H YLTPL G+DAP T GY P
Sbjct: 354 VRISLKPSCLSGPATIAPTRILGFAFLDSLHLKPPLHPYLTPL*GIDAPL**TRLGYFFP 533
Query: 518 NPTT*LIFLGLSPRM*LI*DLANSRRSLVVMKFGPQYQPG 637
PTT*LIF G PRM* D AN RR+ VV K GPQY PG
Sbjct: 534 KPTT*LIFCGFLPRM*SSCDFANLRRTSVV*KLGPQYHPG 653
Score = 27.6 bits (54), Expect(2) = 1e-060
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -2 / -3
Query: 241 AVDKNTMFSAVPHNVP 194
++DKNT+FSAVP P
Sbjct: 262 SIDKNTIFSAVPPMFP 215
Score = 24.9 bits (48), Expect(2) = 2e-031
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3 / +3
Query: 195 GTLCGTAENMVFLS 236
G + GTAE MVFLS
Sbjct: 216 GNIGGTAEKMVFLS 257
>gb|BJ448471.1|BJ448471 BJ448471 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak20b09 5', mRNA sequence
Length = 617
Score = 170 bits (366), Expect(2) = 9e-058
Identities = 64/93 (68%), Positives = 77/93 (82%)
Frame = -3 / +2
Query: 747 KGGMALFNHGRGQPLQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQI 568
KGG+ NHG QPLQYVV +FLA+LYADY++ + PGWYCGPNF TT+ LR+FA+SQ+
Sbjct: 338 KGGLIQLNHGGPQPLQYVVNAAFLASLYADYLDTADTPGWYCGPNFYTTDVLRKFAKSQL 517
Query: 567 NYILGDNPKKMSYVVGFGSKYPRHVHHRGASTP 469
+YILG NP+KMSYVVGFG KYP+ VHHRGAS P
Sbjct: 518 DYILGKNPQKMSYVVGFGKKYPKRVHHRGASIP 616
Score = 89.0 bits (188), Expect(2) = 2e-021
Identities = 45/92 (48%), Positives = 47/92 (51%)
Frame = +2 / -3
Query: 470 GVDAPRWCTCRGYLLPNPTT*LIFLGLSPRM*LI*DLANSRRSLVVMKFGPQYQPGTLTX 649
G+DAP T GY P PTT*LIF G PRM* D AN RR+ VV K GPQY PG
Sbjct: 615 GIDAPL**TRLGYFFPKPTT*LIFCGFLPRM*SSCDFANLRRTSVV*KLGPQYHPGVSAV 436
Query: 650 XXXXXXXXXRKELATTYCSGCPLPWLKSAIPP 745
R TTY SG PWL PP
Sbjct: 435 SR*SAYREARNAALTTY*SG*GPPWLSCISPP 340
Score = 73.9 bits (155), Expect(2) = 9e-058
Identities = 29/61 (47%), Positives = 37/61 (60%)
Frame = -2 / +2
Query: 925 DFXVFSWXXXLPGAQXXXXXXRMFLNPGYPYXXSLAGYHNATSLNMCMYFPGFAAFNFTX 746
++ VF+W LPG+Q R+FL+PGYPY L +HN T MC Y P F +FNFT
Sbjct: 161 NYGVFTWDDKLPGSQVLLSRLRLFLSPGYPYEEILRTFHNQTDNVMCSYLPVFNSFNFTK 340
Query: 745 G 743
G
Sbjct: 341 G 343
Score = 33.6 bits (67), Expect(2) = 2e-021
Identities = 17/35 (48%), Positives = 18/35 (51%)
Frame = +3 / -3
Query: 750 VKLKAAKPGKYMHMLRLVALW*PASXXSYG*PGLR 854
VKL GKY HM V LW + S G PGLR
Sbjct: 336 VKLNELNTGKYEHMTLSVWLWNVLNISS*GYPGLR 232
>gb|BF255699.3|BF255699 HVSMEf0007J01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0007J01f, mRNA sequence
Length = 833
Score = 128 bits (275), Expect(3) = 2e-056
Identities = 53/77 (68%), Positives = 54/77 (70%)
Frame = -2 / +3
Query: 973 TDXRLPKXAKXXXNILDFXVFSWXXXLPGAQXXXXXXRMFLNPGYPYXXSLAGYHNATSL 794
TD RLPK AK NILDF VFSW LPGA RMFLNPGYPY SL GYHN TS+
Sbjct: 51 TDPRLPKNAKAYFNILDFSVFSWDNKLPGATLLLSRLRMFLNPGYPYEESLMGYHNVTSM 230
Query: 793 NMCMYFPGFAAFNFTXG 743
NMCMYFP F AFNFT G
Sbjct: 231 NMCMYFPKFNAFNFTKG 281
Score = 107 bits (229), Expect(3) = 2e-056
Identities = 42/55 (76%), Positives = 47/55 (85%)
Frame = -3 / +3
Query: 747 KGGMALFNHGRGQPLQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTNDLREF 583
KGG+A FNHG+GQ LQY VANS LAALYADYME+V VPGWYCGPN MT ++LR F
Sbjct: 276 KGGLAQFNHGQGQALQYAVANSLLAALYADYMESVIVPGWYCGPN*MTEDNLRSF 440
Score = 77.6 bits (163), Expect(2) = 1e-029
Identities = 40/75 (53%), Positives = 40/75 (53%)
Frame = +3 / -2
Query: 750 VKLKAAKPGKYMHMLRLVALW*PASXXSYG*PGLRNMXXXXXXXXXXXXXXXQLNTXKSR 929
VKL A GKYMHM LV LW P S S G*PGLRNM QL T KSR
Sbjct: 274 VKLNALNLGKYMHMFMLVTLWYPMSDSS*G*PGLRNMRSRDSSRVAPGSLLSQLKTEKSR 95
Query: 930 MLXXXLAXLGSRXSV 974
ML LA LGS SV
Sbjct: 94 MLK*ALAFLGSLGSV 50
Score = 72.5 bits (152), Expect(2) = 1e-029
Identities = 35/52 (67%), Positives = 38/52 (73%)
Frame = +1 / -1
Query: 592 EVVGGHEVWTAVPAGDVDGLHVVGVERSEKGVGDDVLQRLPPAVVEERHPAL 747
+VV GH V AVPAG DGLHVVG++R E GVGD VLQRL AVVE PAL
Sbjct: 431 QVVLGHLVGAAVPAGYDDGLHVVGIKRGE*GVGDGVLQRLALAVVELGEPAL 276
Score = 62.9 bits (131), Expect(2) = 7e-021
Identities = 27/55 (49%), Positives = 30/55 (54%)
Frame = +2 / -2
Query: 581 ANSRRSLVVMKFGPQYQPGTLTXXXXXXXXXXRKELATTYCSGCPLPWLKSAIPP 745
+ RR V+ GPQYQPGT+T KELAT YCS P PWL A PP
Sbjct: 442 SKDRRLSSVI*LGPQYQPGTMTDSM*SA*SAASKELATAYCSAWPWPWLNWASPP 278
Score = 57.9 bits (120), Expect(2) = 7e-021
Identities = 26/37 (70%), Positives = 27/37 (72%)
Frame = +2 / -1
Query: 863 QPRQQQLGARELXXPAEHXEVEDVXXXLGVLGQPXVG 973
QPRQQQ GA EL PAE EVEDV LGVLG+P VG
Sbjct: 161 QPRQQQGGAGELVVPAEDGEVEDVEVGLGVLGEPGVG 51
Score = 22.1 bits (42), Expect(3) = 2e-056
Identities = 12/44 (27%), Positives = 18/44 (40%)
Frame = -3 / +2
Query: 555 GDNPKKMSYVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWR 424
GDN ++S V + + + H G P +Y G K R
Sbjct: 470 GDNQMRISLGVVERVQVQKRILHEGWYAPMTSRRYLALEGQKCR 601
>gb|BU979160.1|BU979160 HA15F07r HA Hordeum vulgare subsp. vulgare cDNA clone HA15F07
5-PRIME, mRNA sequence
Length = 443
Score = 153 bits (328), Expect(2) = 1e-050
Identities = 58/91 (63%), Positives = 71/91 (78%)
Frame = -3 / +1
Query: 747 KGGMALFNHGRGQPLQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQI 568
KGG+ NHG+ QPLQYVV +FLA+L++DY+EA + PGWYCGP+F + LR FAR+Q+
Sbjct: 166 KGGLIQLNHGQPQPLQYVVNAAFLASLFSDYLEAADTPGWYCGPHFYSIEVLRSFARTQM 345
Query: 567 NYILGDNPKKMSYVVGFGSKYPRHVHHRGAS 475
YILG NP KMSYVVG G YP+ VHHRGAS
Sbjct: 346 EYILGKNPLKMSYVVGHGKHYPKRVHHRGAS 438
Score = 67.5 bits (141), Expect(2) = 1e-050
Identities = 28/51 (54%), Positives = 31/51 (60%)
Frame = -2 / +1
Query: 895 LPGAQXXXXXXRMFLNPGYPYXXSLAGYHNATSLNMCMYFPGFAAFNFTXG 743
LPGAQ R+FL+PGYPY L YHN TS MC Y P F +FN T G
Sbjct: 19 LPGAQVLLSRLRLFLSPGYPYEEMLRTYHNQTSTIMCSYLPDFRSFNRTKG 171
>gb|BI956352.1|BI956352 HVSMEn0002L24f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0002L24f, mRNA sequence
Length = 831
Score = 199 bits (430), Expect = 2e-050
Identities = 74/115 (64%), Positives = 88/115 (76%)
Frame = -3 / +1
Query: 747 KGGMALFNHGRGQPLQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQI 568
KGG+ NHG QPLQYVV +FLA+LYADY++ + PGWYCGPNF TT LR+FA+SQ+
Sbjct: 22 KGGLIQLNHGGPQPLQYVVNAAFLASLYADYLDTADTPGWYCGPNFYTTGGLRKFAKSQL 201
Query: 567 NYILGDNPKKMSYVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADP 403
+YILG NP+KMSYVVGFG KYP+ VHHRGAS PHNG KY C GG+ W + P
Sbjct: 202 DYILGKNPQKMSYVVGFGKKYPKRVHHRGASIPHNGGKYGCKGGFGWERGCQCTP 366
Score = 103 bits (219), Expect = 2e-021
Identities = 52/106 (49%), Positives = 54/106 (50%)
Frame = +2 / -2
Query: 428 HL*PPVHEYLTPLCGVDAPRWCTCRGYLLPNPTT*LIFLGLSPRM*LI*DLANSRRSLVV 607
H PP+H YL PL G+DAP T GY P PTT*LIF G PRM* D AN R VV
Sbjct: 341 HPNPPLHPYLPPL*GIDAPL**TRLGYFFPKPTT*LIFCGFLPRM*SSCDFANLRSPPVV 162
Query: 608 MKFGPQYQPGTLTXXXXXXXXXXRKELATTYCSGCPLPWLKSAIPP 745
K GPQY PG R TTY SG PWL PP
Sbjct: 161 *KLGPQYHPGVSAVSR*SAYREARNAALTTY*SG*GPPWLSCISPP 24
>gb|BQ760319.1|BQ760319 EBpi07_SQ003_L24_R pistil, 12 DPA, no treatment, cv Optic, EBpi07
Hordeum vulgare subsp. vulgare cDNA clone
EBpi07_SQ003_L24 5', mRNA sequence
Length = 620
Score = 105 bits (223), Expect(3) = 1e-043
Identities = 39/60 (65%), Positives = 45/60 (75%)
Frame = -3 / +1
Query: 648 AVNVPGWYCGPNFMTTNDLREFARSQINYILGDNPKKMSYVVGFGSKYPRHVHHRGASTP 469
A + PGWYCGP+F + LR FAR+Q+ YILG NP KMSYVVG G YP+ VHHRGAS P
Sbjct: 1 AADTPGWYCGPHFYSIEVLRSFARTQMEYILGKNPLKMSYVVGHGKHYPKRVHHRGASIP 180
Score = 81.3 bits (171), Expect(3) = 1e-043
Identities = 32/80 (40%), Positives = 44/80 (55%)
Frame = -3 / +1
Query: 492 HHRGASTPHNGVKYSCTGGYKWRDSKKADPNLLGGAMVGGPDKNDGFKDSRNTSGRTSRR 313
H + G+ C GG+ WRD+KK +P+++ GAMV GPD++DGFKD R T
Sbjct: 160 HRGASIPKKKGIHPGCKGGWTWRDTKKPNPHIIVGAMVAGPDRHDGFKDIRKNRNYTEPT 339
Query: 312 WSGNAGXXXXXXXLTSSGRG 253
+GNAG L+ G G
Sbjct: 340 LAGNAGLVAALVALSGEGHG 399
Score = 29.5 bits (58), Expect(3) = 1e-043
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = -2 / +1
Query: 238 VDKNTMFSAVPHNVP 194
VDKNTMFSAVP P
Sbjct: 400 VDKNTMFSAVPPMFP 444
>gb|CB859220.1|CB859220 HI09M02w HI Hordeum vulgare subsp. vulgare cDNA clone HI09M02
3-PRIME, mRNA sequence
Length = 649
Score = 163 bits (351), Expect(2) = 1e-043
Identities = 64/98 (65%), Positives = 75/98 (76%)
Frame = -3 / -2
Query: 546 PKKMSYVVGFGSKYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLLGGAMVGGPD 367
P KMSYVVG+G KYP+ +HHRGASTP NG+KYSCTGG KWRDSKKADP++L GAMVGGPD
Sbjct: 648 PMKMSYVVGYGKKYPKRLHHRGASTPKNGIKYSCTGGNKWRDSKKADPHVLTGAMVGGPD 469
Query: 366 KNDGFKDSRNTSGRTSRRWSGNAGXXXXXXXLTSSGRG 253
KND FKD+R + + GNAG +T+SGRG
Sbjct: 468 KNDKFKDARISYAQNEPTLVGNAGLVAALVAITNSGRG 355
Score = 119 bits (255), Expect(2) = 1e-033
Identities = 51/67 (76%), Positives = 53/67 (79%)
Frame = +2 / +2
Query: 347 SLKPSFLSGPPTMAPPSRLGSAFLLSRHL*PPVHEYLTPLCGVDAPRWCTCRGYLLPNPT 526
SL SFLSGPPTMAP S GSAFL SRHL PPVHEYL P GVDAPRWC+ GY LP PT
Sbjct: 449 SLNLSFLSGPPTMAPVST*GSAFLESRHLLPPVHEYLIPFLGVDAPRWCSRFGYFLPYPT 628
Query: 527 T*LIFLG 547
T*LIF+G
Sbjct: 629 T*LIFIG 649
Score = 43.7 bits (89), Expect(2) = 1e-033
Identities = 21/45 (46%), Positives = 23/45 (51%)
Frame = +3 / +2
Query: 195 GTLCGTAENMVFLSTAVTELXXXXXXXXXXXXXXXXXLTSVGSFC 329
G + GTAENMVFLSTA T + TSVGSFC
Sbjct: 296 GNMGGTAENMVFLSTAPTPVPRPLLVMATSAATSPALPTSVGSFC 430
Score = 33.6 bits (67), Expect(2) = 1e-043
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -1 / -1
Query: 242 RRRQEHHVLRRAA 204
RRRQEHHVLRRAA
Sbjct: 343 RRRQEHHVLRRAA 305
>gb|BF260719.2|BF260719 HVSMEf0022M05f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0022M05f, mRNA sequence
Length = 541
Score = 128 bits (275), Expect(2) = 4e-043
Identities = 53/77 (68%), Positives = 54/77 (70%)
Frame = -2 / +2
Query: 973 TDXRLPKXAKXXXNILDFXVFSWXXXLPGAQXXXXXXRMFLNPGYPYXXSLAGYHNATSL 794
TD RLPK AK NILDF VFSW LPGA RMFLNPGYPY SL GYHN TS+
Sbjct: 209 TDPRLPKNAKAYFNILDFSVFSWDNKLPGATLLLSRLRMFLNPGYPYEESLMGYHNVTSM 388
Query: 793 NMCMYFPGFAAFNFTXG 743
NMCMYFP F AFNFT G
Sbjct: 389 NMCMYFPKFNAFNFTKG 439
Score = 77.6 bits (163), Expect(2) = 2e-024
Identities = 40/75 (53%), Positives = 40/75 (53%)
Frame = +3 / -2
Query: 750 VKLKAAKPGKYMHMLRLVALW*PASXXSYG*PGLRNMXXXXXXXXXXXXXXXQLNTXKSR 929
VKL A GKYMHM LV LW P S S G*PGLRNM QL T KSR
Sbjct: 432 VKLNALNLGKYMHMFMLVTLWYPMSDSS*G*PGLRNMRSRDSSRVAPGSLLSQLKTEKSR 253
Query: 930 MLXXXLAXLGSRXSV 974
ML LA LGS SV
Sbjct: 252 MLK*ALAFLGSLGSV 208
Score = 66.6 bits (139), Expect(2) = 4e-043
Identities = 27/35 (77%), Positives = 30/35 (85%)
Frame = -3 / +2
Query: 747 KGGMALFNHGRGQPLQYVVANSFLAALYADYMEAV 643
KGG+A FNHG+ LQY VANSFLAALYADYME+V
Sbjct: 434 KGGLAQFNHGQCHALQYAVANSFLAALYADYMESV 538
Score = 55.1 bits (114), Expect(2) = 2e-024
Identities = 23/36 (63%), Positives = 28/36 (77%)
Frame = +1 / -1
Query: 640 VDGLHVVGVERSEKGVGDDVLQRLPPAVVEERHPAL 747
+DGLHVVG++R E+GVGD VLQR+ VVE PAL
Sbjct: 541 LDGLHVVGIKRGEEGVGDGVLQRMALXVVELGEPAL 434
>gb|BI949643.1|BI949643 HVSMEl0015A22f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0015A22f, mRNA sequence
Length = 902
Score = 100 bits (214), Expect(3) = 8e-040
Identities = 40/72 (55%), Positives = 50/72 (69%)
Frame = -3 / +3
Query: 747 KGGMALFNHGRGQPLQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQI 568
KGG+ NHG+ QPLQYVV +FLA+L++DY+EA + P WYCGP L FAR+ +
Sbjct: 549 KGGLIQLNHGQPQPLQYVVNAAFLASLFSDYLEAADTPWWYCGPISTPIEVLPSFARTHM 728
Query: 567 NYILGDNPKKMS 532
YILG NP KMS
Sbjct: 729 EYILGKNPLKMS 764
Score = 76.7 bits (161), Expect(3) = 8e-040
Identities = 34/77 (44%), Positives = 39/77 (50%)
Frame = -2 / +3
Query: 973 TDXRLPKXAKXXXNILDFXVFSWXXXLPGAQXXXXXXRMFLNPGYPYXXSLAGYHNATSL 794
T L K ++ VFSW LPGAQ R+FL+P YPY L YHN TS
Sbjct: 324 TSVELAKNVHVFSRPPNYGVFSWDNKLPGAQVLLSRLRLFLSPXYPYEEMLRTYHNQTST 503
Query: 793 NMCMYFPGFAAFNFTXG 743
MC Y P F +FN T G
Sbjct: 504 IMCSYLPDFRSFNRTKG 554
Score = 24.9 bits (48), Expect(3) = 8e-040
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -3 / +1
Query: 504 PRHVHHRGASTPHNGV 457
P+ VHH GAS P V
Sbjct: 790 PKRVHHPGASIPKKKV 837
>gb|CB875548.1|CB875548 HX08K06w HX Hordeum vulgare subsp. vulgare cDNA clone HX08K06
3-PRIME, mRNA sequence
Length = 620
Score = 81.3 bits (171), Expect(3) = 3e-034
Identities = 32/80 (40%), Positives = 44/80 (55%)
Frame = -3 / -3
Query: 492 HHRGASTPHNGVKYSCTGGYKWRDSKKADPNLLGGAMVGGPDKNDGFKDSRNTSGRTSRR 313
H + G+ C GG+ WRD+KK +P+++ GAMV GPD++DGFKD R T
Sbjct: 519 HRGASIPKKKGIHPGCKGGWTWRDTKKPNPHIIVGAMVAGPDRHDGFKDIRKNRNYTEPT 340
Query: 312 WSGNAGXXXXXXXLTSSGRG 253
+GNAG L+ G G
Sbjct: 339 LAGNAGLVAALVALSGEGHG 280
Score = 73.0 bits (153), Expect(3) = 3e-034
Identities = 28/39 (71%), Positives = 31/39 (79%)
Frame = -3 / -3
Query: 585 FARSQINYILGDNPKKMSYVVGFGSKYPRHVHHRGASTP 469
FAR+Q+ YILG NP KMSYVVG G YP+ VHHRGAS P
Sbjct: 615 FARTQMEYILGKNPLKMSYVVGHGKHYPKRVHHRGASIP 499
Score = 29.5 bits (58), Expect(3) = 3e-034
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = -2 / -3
Query: 238 VDKNTMFSAVPHNVP 194
VDKNTMFSAVP P
Sbjct: 279 VDKNTMFSAVPPMFP 235
>gb|AV920035.1|AV920035 AV920035 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9a10 3', mRNA sequence
Length = 664
Score = 127 bits (272), Expect(2) = 4e-031
Identities = 48/72 (66%), Positives = 55/72 (76%)
Frame = -3 / -1
Query: 510 KYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLLGGAMVGGPDKNDGFKDSRNTS 331
KYP+ VHHRGAS PHNGVKY C GG+KWR+SKKA+PN+L GAMV GPDK+DGFKD R
Sbjct: 661 KYPKRVHHRGASIPHNGVKYGCKGGFKWRESKKANPNILVGAMVAGPDKHDGFKDIRTNY 482
Query: 330 GRTSRRWSGNAG 295
T + NAG
Sbjct: 481 NYTEPTLAANAG 446
Score = 27.6 bits (54), Expect(2) = 4e-031
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -2 / -1
Query: 241 AVDKNTMFSAVPHNVP 194
++DKNT+FSAVP P
Sbjct: 397 SIDKNTIFSAVPPMFP 350
>gb|AV917955.1|AV917955 AV917955 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17d08 3', mRNA sequence
Length = 663
Score = 127 bits (272), Expect(2) = 4e-031
Identities = 48/72 (66%), Positives = 55/72 (76%)
Frame = -3 / -3
Query: 510 KYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLLGGAMVGGPDKNDGFKDSRNTS 331
KYP+ VHHRGAS PHNGVKY C GG+KWR+SKKA+PN+L GAMV GPDK+DGFKD R
Sbjct: 661 KYPKRVHHRGASIPHNGVKYGCKGGFKWRESKKANPNILVGAMVAGPDKHDGFKDIRTNY 482
Query: 330 GRTSRRWSGNAG 295
T + NAG
Sbjct: 481 NYTEPTLAANAG 446
Score = 27.6 bits (54), Expect(2) = 4e-031
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -2 / -3
Query: 241 AVDKNTMFSAVPHNVP 194
++DKNT+FSAVP P
Sbjct: 397 SIDKNTIFSAVPPMFP 350
>gb|BJ456192.1|BJ456192 BJ456192 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak20b09 3', mRNA sequence
Length = 663
Score = 127 bits (272), Expect(2) = 4e-031
Identities = 48/72 (66%), Positives = 55/72 (76%)
Frame = -3 / -2
Query: 510 KYPRHVHHRGASTPHNGVKYSCTGGYKWRDSKKADPNLLGGAMVGGPDKNDGFKDSRNTS 331
KYP+ VHHRGAS PHNGVKY C GG+KWR+SKKA+PN+L GAMV GPDK+DGFKD R
Sbjct: 662 KYPKRVHHRGASIPHNGVKYGCKGGFKWRESKKANPNILVGAMVAGPDKHDGFKDIRTNY 483
Query: 330 GRTSRRWSGNAG 295
T + NAG
Sbjct: 482 NYTEPTLAANAG 447
Score = 27.6 bits (54), Expect(2) = 4e-031
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -2 / -2
Query: 241 AVDKNTMFSAVPHNVP 194
++DKNT+FSAVP P
Sbjct: 398 SIDKNTIFSAVPPMFP 351
>gb|CK125884.1|CK125884 BES1824111A2a04 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010A0411 5-PRIME, mRNA sequence
Length = 748
Score = 90.4 bits (191), Expect(2) = 5e-027
Identities = 37/86 (43%), Positives = 52/86 (60%)
Frame = -3 / +2
Query: 732 LFNHGRGQPLQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQINYILG 553
L +H + LQ+V + SFL A Y+D + A G C + ++ FA+SQ++YILG
Sbjct: 92 LLHHQKWNNLQFVTSGSFLLAAYSDSLAAAGQAGVRCPAGAASPAEIMAFAKSQVDYILG 271
Query: 552 DNPKKMSYVVGFGSKYPRHVHHRGAS 475
NP+ SY+VG+G YP HHRGAS
Sbjct: 272 SNPRGTSYMVGYGFIYPLEAHHRGAS 349
Score = 51.0 bits (105), Expect(2) = 5e-027
Identities = 21/44 (47%), Positives = 26/44 (59%)
Frame = -3 / +2
Query: 429 WRDSKKADPNLLGGAMVGGPDKNDGFKDSRNTSGRTSRRWSGNA 298
W K ++PNLL GA+VGGPD+ D F D RN +T NA
Sbjct: 407 WYPRKGSNPNLLDGAIVGGPDEYDNFADERNNYEQTEATTYNNA 538
>gb|AV909996.1|AV909996 AV909996 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak2l16 5', mRNA sequence
Length = 253
Score = 88.1 bits (186), Expect(2) = 3e-026
Identities = 32/50 (64%), Positives = 38/50 (76%)
Frame = -3 / +1
Query: 747 KGGMALFNHGRGQPLQYVVANSFLAALYADYMEAVNVPGWYCGPNFMTTN 598
KGG+ NHG QPLQYVV +FLA+LYADY++ PGWYCGPNF TT+
Sbjct: 103 KGGLIQLNHGGPQPLQYVVNAAFLASLYADYLDTAXTPGWYCGPNFYTTD 252
Score = 50.6 bits (104), Expect(2) = 3e-026
Identities = 19/36 (52%), Positives = 22/36 (61%)
Frame = -2 / +1
Query: 850 NPGYPYXXSLAGYHNATSLNMCMYFPGFAAFNFTXG 743
+PGYPY L +HN T MC Y P F +FNFT G
Sbjct: 1 SPGYPYEEILRTFHNQTDNVMCSYLPVFNSFNFTKG 108
>gb|AJ434494.1|AJ434494 AJ434494 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200012H05F1, mRNA sequence
Length = 477
Score = 104 bits (221), Expect(2) = 6e-026
Identities = 42/69 (60%), Positives = 50/69 (72%)
Frame = -3 / +2
Query: 459 VKYSCTGGYKWRDSKKADPNLLGGAMVGGPDKNDGFKDSRNTSGRTSRRWSGNAGXXXXX 280
+KYSCTGG KWRDSKKADP++L GAMVGGPDKND FKD+R + + GNAG
Sbjct: 5 IKYSCTGGNKWRDSKKADPHVLTGAMVGGPDKNDKFKDARISYAQNEPTLVGNAGLVAAL 184
Query: 279 XXLTSSGRG 253
+T+SGRG
Sbjct: 185 VAITNSGRG 211
Score = 33.6 bits (67), Expect(2) = 6e-026
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -1 / +1
Query: 242 RRRQEHHVLRRAA 204
RRRQEHHVLRRAA
Sbjct: 223 RRRQEHHVLRRAA 261
>gb|BQ764603.1|BQ764603 EBca01_SQ004_I10_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ004_I10 5', mRNA sequence
Length = 512
Score = 103 bits (220), Expect(2) = 5e-024
Identities = 40/62 (64%), Positives = 46/62 (74%)
Frame = -3 / +1
Query: 480 ASTPHNGVKYSCTGGYKWRDSKKADPNLLGGAMVGGPDKNDGFKDSRNTSGRTSRRWSGN 301
AS PHNGVKY C GG+KWR+SKKA+PN+L GAMV GPDK+DGFKD R T + N
Sbjct: 1 ASIPHNGVKYGCKGGFKWRESKKANPNILVGAMVAGPDKHDGFKDIRTNYNYTEPTLAAN 180
Query: 300 AG 295
AG
Sbjct: 181 AG 186
Score = 27.6 bits (54), Expect(2) = 5e-024
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -2 / +1
Query: 241 AVDKNTMFSAVPHNVP 194
++DKNT+FSAVP P
Sbjct: 235 SIDKNTIFSAVPPMFP 282
>gb|BF259829.2|BF259829 HVSMEf0020G01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0020G01f, mRNA sequence
Length = 534
Score = 72.5 bits (152), Expect(3) = 1e-023
Identities = 27/52 (51%), Positives = 35/52 (67%)
Frame = -3 / +3
Query: 624 CGPNFMTTNDLREFARSQINYILGDNPKKMSYVVGFGSKYPRHVHHRGASTP 469
C + ++ FARSQ++Y+LG NP MSY+VG K+P HVHHRGAS P
Sbjct: 204 CPDGEVAPAEIVAFARSQVDYVLGKNPLSMSYMVGHSDKFPTHVHHRGASIP 359
Score = 48.7 bits (100), Expect(3) = 1e-023
Identities = 19/28 (67%), Positives = 23/28 (82%)
Frame = -3 / +3
Query: 423 DSKKADPNLLGGAMVGGPDKNDGFKDSR 340
+SK ADPN+L GA+VGGPD +DGF D R
Sbjct: 417 NSKGADPNVLVGALVGGPDGHDGFVDDR 500
Score = 26.7 bits (52), Expect(3) = 1e-023
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3 / +3
Query: 705 LQYVVANSFLAALYADYM 652
+QYV ++ FL +YADY+
Sbjct: 126 MQYVSSSVFLLTVYADYL 179
>gb|CA024900.1|CA024900 HZ50K09r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ50K09
5-PRIME, mRNA sequence
Length = 509
Score = 102 bits (217), Expect(2) = 1e-023
Identities = 42/70 (60%), Positives = 50/70 (71%)
Frame = -3 / +1
Query: 462 GVKYSCTGGYKWRDSKKADPNLLGGAMVGGPDKNDGFKDSRNTSGRTSRRWSGNAGXXXX 283
G+K SCTGG KWRDSKKADP++L GAMVGGPDKND FKD+R + + GNAG
Sbjct: 13 GIKSSCTGGNKWRDSKKADPHVLTGAMVGGPDKNDKFKDARISYAQNEPTLVGNAGLVAA 192
Query: 282 XXXLTSSGRG 253
+T+SGRG
Sbjct: 193 LVFITNSGRG 222
Score = 27.6 bits (54), Expect(2) = 1e-023
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -2 / +3
Query: 235 DKNTMFSAVPHNVP 194
DKNTMFSAVP P
Sbjct: 240 DKNTMFSAVPPMFP 281
>gb|BF256953.2|BF256953 HVSMEf0011H11f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0011H11f, mRNA sequence
Length = 819
Score = 72.5 bits (152), Expect(3) = 2e-023
Identities = 27/52 (51%), Positives = 35/52 (67%)
Frame = -3 / +3
Query: 624 CGPNFMTTNDLREFARSQINYILGDNPKKMSYVVGFGSKYPRHVHHRGASTP 469
C + ++ FARSQ++Y+LG NP MSY+VG K+P HVHHRGAS P
Sbjct: 204 CPDGEVAPAEIVAFARSQVDYVLGKNPLSMSYMVGHSDKFPTHVHHRGASIP 359
Score = 47.8 bits (98), Expect(3) = 2e-023
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = -3 / +3
Query: 423 DSKKADPNLLGGAMVGGPDKNDGFKDSR 340
+SK ADPN+L A+VGGPD++DGF D R
Sbjct: 417 NSKGADPNVLVSALVGGPDRHDGFGDDR 500
Score = 26.7 bits (52), Expect(3) = 2e-023
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3 / +3
Query: 705 LQYVVANSFLAALYADYM 652
+QYV ++ FL +YADY+
Sbjct: 126 MQYVSSSVFLLTVYADYL 179
>gb|AV912096.1|AV912096 AV912096 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak2l16 3', mRNA sequence
Length = 569
Score = 77.1 bits (162), Expect(3) = 2e-023
Identities = 31/54 (57%), Positives = 37/54 (68%)
Frame = -3 / -1
Query: 456 KYSCTGGYKWRDSKKADPNLLGGAMVGGPDKNDGFKDSRNTSGRTSRRWSGNAG 295
KY GG+KWR+SKKA+ N+L GAMV GPDK+DGFKD R T + NAG
Sbjct: 512 KYGXKGGFKWRESKKANXNILVGAMVAGPDKHDGFKDIRTNYNYTEPTLAANAG 351
Score = 42.3 bits (86), Expect(3) = 2e-023
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = -3 / -3
Query: 510 KYPRHVHHRGASTPHNG 460
KYP+ VHHRGAS PHNG
Sbjct: 567 KYPKRVHHRGASIPHNG 517
Score = 27.6 bits (54), Expect(3) = 2e-023
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -2 / -1
Query: 241 AVDKNTMFSAVPHNVP 194
++DKNT+FSAVP P
Sbjct: 302 SIDKNTIFSAVPPMFP 255
>gb|CK123273.1|CK123273 BES1824103c09 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010C093 5-PRIME, mRNA sequence
Length = 594
Score = 73.9 bits (155), Expect(2) = 4e-022
Identities = 30/68 (44%), Positives = 41/68 (60%)
Frame = -3 / +2
Query: 678 LAALYADYMEAVNVPGWYCGPNFMTTNDLREFARSQINYILGDNPKKMSYVVGFGSKYPR 499
L A Y+D + A G C + ++ FA+SQ++YILG NP+ SY+VG+G YP
Sbjct: 17 LLAAYSDSLAAAGQAGVRCPAGAASPAEIMAFAKSQVDYILGSNPRGTSYMVGYGFIYPL 196
Query: 498 HVHHRGAS 475
HHRGAS
Sbjct: 197 EAHHRGAS 220
Score = 51.0 bits (105), Expect(2) = 4e-022
Identities = 21/44 (47%), Positives = 26/44 (59%)
Frame = -3 / +2
Query: 429 WRDSKKADPNLLGGAMVGGPDKNDGFKDSRNTSGRTSRRWSGNA 298
W K ++PNLL GA+VGGPD+ D F D RN +T NA
Sbjct: 278 WYPRKGSNPNLLDGAIVGGPDEYDNFADERNNYEQTEATTYNNA 409
>emb|Z34266.1|HVBKACPS1 H.vulgare (pMaW21) pseudo mRNA for beta-ketoacyl-ACP synthase
(partial)
Length = 2249
Score = 80.3 bits (169), Expect(2) = 5e-021
Identities = 29/48 (60%), Positives = 37/48 (77%)
Frame = -3 / +3
Query: 612 FMTTNDLREFARSQINYILGDNPKKMSYVVGFGSKYPRHVHHRGASTP 469
+ + D+R FA SQ NY+LGDN K+SY+VG+GS YP+ VHHRGAS P
Sbjct: 9 YFSPTDIRNFAISQANYVLGDNTMKLSYLVGYGSNYPQQVHHRGASIP 152
Score = 40.9 bits (83), Expect(2) = 5e-021
Identities = 16/39 (41%), Positives = 26/39 (66%)
Frame = -3 / +3
Query: 438 GYKWRDSKKADPNLLGGAMVGGPDKNDGFKDSRNTSGRT 322
G+++ S +PN+ GA+VGGP +ND F D R+ + +T
Sbjct: 177 GFEYLHSSSPNPNVAMGAVVGGPFQNDTFVDLRDNAVQT 293
>gb|BQ766009.1|BQ766009 EBro03_SQ008_D24_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ008_D24 5', mRNA sequence
Length = 613
Score = 65.7 bits (137), Expect(3) = 6e-021
Identities = 22/41 (53%), Positives = 33/41 (80%)
Frame = -3 / +2
Query: 597 DLREFARSQINYILGDNPKKMSYVVGFGSKYPRHVHHRGAS 475
++ AR+Q++Y+LG NP+ +SY+VG+G+KYP VHHR AS
Sbjct: 293 EVAALARAQVDYVLGSNPRGVSYLVGYGAKYPARVHHRAAS 415
Score = 45.5 bits (93), Expect(3) = 6e-021
Identities = 16/36 (44%), Positives = 26/36 (72%)
Frame = -3 / +2
Query: 429 WRDSKKADPNLLGGAMVGGPDKNDGFKDSRNTSGRT 322
W + ++PN+L GA+VGGPD+ D F+D+R+ +T
Sbjct: 473 WFGRRSSNPNVLVGAIVGGPDRRDRFRDNRDNYMQT 580
Score = 27.2 bits (53), Expect(3) = 6e-021
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3 / +2
Query: 705 LQYVVANSFLAALYADYMEAVNV 637
+QYV +FL + YADY+ V
Sbjct: 182 MQYVTNAAFLLSTYADYLAGAGV 250
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 391,011,593
Number of Sequences: 312970
Number of extensions: 6280110
Number of successful extensions: 68693
Number of sequences better than 1.0e-020: 55
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 12462706744
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)