TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4548790.2.1
(1044 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF621546.3|BF621546 HVSMEa0011F20f Hordeum vulgare seedl... 254 2e-089
gb|BG368084.2|BG368084 HVSMEi0015J17f Hordeum vulgare 20 DA... 264 2e-081
gb|CA006626.1|CA006626 HU05D17r HU Hordeum vulgare subsp. v... 230 2e-080
gb|CA001705.1|CA001705 HS05F12r HS Hordeum vulgare subsp. v... 244 3e-079
gb|BJ454545.1|BJ454545 BJ454545 K. Sato unpublished cDNA li... 292 2e-078
gb|BJ462348.1|BJ462348 BJ462348 K. Sato unpublished cDNA li... 292 2e-078
gb|BF626312.1|BF626312 HVSMEa0018F04f Hordeum vulgare seedl... 213 8e-077
gb|BQ465629.1|BQ465629 HU04D11r HU Hordeum vulgare subsp. v... 281 5e-075
gb|BF622346.3|BF622346 HVSMEa0002O08f Hordeum vulgare seedl... 189 2e-073
gb|CA005047.1|CA005047 HU12E04u HU Hordeum vulgare subsp. v... 275 4e-073
gb|CA031352.1|CA031352 HX09L09r HX Hordeum vulgare subsp. v... 172 2e-070
gb|BI960235.1|BI960235 HVSMEn0023N12f Hordeum vulgare rachi... 211 5e-069
gb|BI958334.1|BI958334 HVSMEn0014H08f Hordeum vulgare rachi... 186 9e-069
gb|BQ766646.1|BQ766646 EBro08_SQ006_P15_R root, 3 week, dro... 258 4e-068
gb|BQ768669.1|BQ768669 EBro08_SQ012_H11_R root, 3 week, dro... 184 1e-067
gb|BF253497.3|BF253497 HVSMEf0001B16f Hordeum vulgare seedl... 219 6e-067
gb|BQ760682.1|BQ760682 EBro03_SQ003_C23_R root, 3 week, wat... 164 1e-065
gb|CA024803.1|CA024803 HZ50F17r HZ Hordeum vulgare subsp. v... 172 6e-065
gb|BU990530.1|BU990530 HF25F05r HF Hordeum vulgare subsp. v... 238 3e-062
gb|BQ766938.1|BQ766938 EBro08_SQ007_D18_R root, 3 week, dro... 172 3e-062
gb|BI957345.1|BI957345 HVSMEn0009B08f Hordeum vulgare rachi... 172 6e-062
gb|CA023510.1|CA023510 HZ46H12r HZ Hordeum vulgare subsp. v... 228 2e-061
gb|BG368613.1|BG368613 HVSMEi0019P07f Hordeum vulgare 20 DA... 231 7e-060
gb|CA017256.1|CA017256 HV14F10u HV Hordeum vulgare subsp. v... 226 1e-058
gb|BU989542.1|BU989542 HF22A11r HF Hordeum vulgare subsp. v... 218 2e-057
gb|BU990552.1|BU990552 HF25G07r HF Hordeum vulgare subsp. v... 218 2e-057
gb|BE215000.1|BE215000 HV_CEb0005H19f Hordeum vulgare seedl... 147 3e-057
gb|BI957392.1|BI957392 HVSMEn0009F06f Hordeum vulgare rachi... 148 3e-056
gb|AV917412.1|AV917412 AV917412 K. Sato unpublished cDNA li... 218 4e-056
gb|BU989257.1|BU989257 HF21D19r HF Hordeum vulgare subsp. v... 215 3e-055
gb|AL503556.1|AL503556 AL503556 Hordeum vulgare Barke roots... 97 8e-055
gb|CA025602.1|CA025602 HZ52K01r HZ Hordeum vulgare subsp. v... 162 1e-053
gb|BF065271.3|BF065271 HV_CEb0024O07f Hordeum vulgare seedl... 83 6e-053
gb|BF256452.2|BF256452 HVSMEf0010A02f Hordeum vulgare seedl... 179 8e-053
gb|BF619242.3|BF619242 HVSMEc0015J01f Hordeum vulgare seedl... 129 2e-052
gb|CA022537.1|CA022537 HZ43I17r HZ Hordeum vulgare subsp. v... 126 2e-051
gb|BQ461074.1|BQ461074 HE01E19r HE Hordeum vulgare subsp. v... 169 1e-050
gb|BI777322.2|BI777322 EBro03_SQ002_N24_R root, 3 week, wat... 197 8e-050
gb|CA017681.1|CA017681 HV05O14r HV Hordeum vulgare subsp. v... 124 2e-047
gb|BI779583.2|BI779583 EBro01_SQ004_H20_R root, 3 week, hyd... 116 5e-046
gb|BF257120.2|BF257120 HVSMEf0011O18f Hordeum vulgare seedl... 99 6e-046
gb|BQ762357.1|BQ762357 EBro01_SQ005_H18_R root, 3 week, hyd... 182 3e-045
gb|BQ663324.1|BQ663324 HU02C09u HU Hordeum vulgare subsp. v... 99 6e-043
gb|AV913816.1|AV913816 AV913816 K. Sato unpublished cDNA li... 100 1e-042
gb|BJ464959.1|BJ464959 BJ464959 K. Sato unpublished cDNA li... 100 1e-042
gb|BI953531.1|BI953531 HVSMEm0013B19f Hordeum vulgare green... 134 4e-040
gb|AV922591.1|AV922591 AV922591 K. Sato unpublished cDNA li... 165 5e-040
gb|CK124288.1|CK124288 BES1824108e08 BES1824 Hordeum vulgar... 129 1e-039
gb|AV916436.1|AV916436 AV916436 K. Sato unpublished cDNA li... 160 1e-038
gb|CA009609.1|CA009609 HU14J18r HU Hordeum vulgare subsp. v... 84 3e-038
gb|BG301240.1|BG301240 HVSMEb0020C04f Hordeum vulgare seedl... 156 2e-037
gb|AL501964.1|AL501964 AL501964 Hordeum vulgare Barke roots... 155 4e-037
gb|CA025455.1|CA025455 HZ52D12r HZ Hordeum vulgare subsp. v... 148 5e-035
gb|BF629000.2|BF629000 HVSMEb0009I04f Hordeum vulgare seedl... 60 1e-033
gb|AL505514.1|AL505514 AL505514 Hordeum vulgare Barke roots... 100 3e-032
gb|BU980607.1|BU980607 HA21C12r HA Hordeum vulgare subsp. v... 82 2e-031
gb|BI957701.1|BI957701 HVSMEn0010L18f Hordeum vulgare rachi... 66 3e-031
gb|BJ468536.1|BJ468536 BJ468536 K. Sato unpublished cDNA li... 135 5e-031
gb|BG300056.1|BG300056 HVSMEb0011D11f Hordeum vulgare seedl... 62 9e-030
gb|AV921430.1|AV921430 AV921430 K. Sato unpublished cDNA li... 93 1e-029
gb|BF260514.2|BF260514 HVSMEf0022D10f Hordeum vulgare seedl... 60 1e-028
gb|BQ463996.1|BQ463996 HF01B01T HF Hordeum vulgare subsp. v... 126 2e-028
gb|BQ461095.1|BQ461095 HE01D18r HE Hordeum vulgare subsp. v... 95 3e-028
gb|BJ465292.1|BJ465292 BJ465292 K. Sato unpublished cDNA li... 124 7e-028
emb|AJ234766.1|HVU234766 Hordeum vulgare genomic DNA fragme... 75 1e-026
gb|BI951147.1|BI951147 HVSMEl0024K11f Hordeum vulgare spike... 57 1e-026
gb|BI950759.1|BI950759 HVSMEl0023B18f Hordeum vulgare spike... 57 1e-025
gb|BI960698.1|BI960698 HVSMEn0025O13f Hordeum vulgare rachi... 97 4e-025
gb|BQ760589.1|BQ760589 EBro03_SQ001_N06_R root, 3 week, wat... 56 4e-025
gb|BQ765644.1|BQ765644 EBro03_SQ007_C21_R root, 3 week, wat... 57 2e-024
gb|BI956638.1|BI956638 HVSMEn0004I04f Hordeum vulgare rachi... 57 5e-024
gb|BQ468086.1|BQ468086 HR01O13r HR Hordeum vulgare subsp. v... 57 2e-023
gb|BU987886.1|BU987886 HF16A18r HF Hordeum vulgare subsp. v... 109 3e-023
gb|BG343293.2|BG343293 HVSMEg0005F10f Hordeum vulgare pre-a... 93 2e-022
>gb|BF621546.3|BF621546 HVSMEa0011F20f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0011F20f, mRNA sequence
Length = 825
Score = 254 bits (549), Expect(3) = 2e-089
Identities = 97/130 (74%), Positives = 105/130 (80%)
Frame = +2 / +3
Query: 236 SILVTATNFCPPNYALPSDDGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRK 415
SI+VTATNFCPPNY LPSDDGGWCNPPRPHFD+A P FLHIA+YRAGIVPVSYRRVPC K
Sbjct: 387 SIMVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSYRRVPCVK 566
Query: 416 SGGVRFTINGFRYFNLVLITNVAGAGDVVRASVKAASTGWLPMSRNWGQNWQSNAILVGQ 595
GG+RFTING YFNLVL+TNV GAGD +K TGW MSRNWG NWQSN L Q
Sbjct: 567 KGGIRFTINGHSYFNLVLVTNVXGAGDARSVFIKGTRTGWQAMSRNWGMNWQSNTFLGRQ 746
Query: 596 ALSFRVTASD 625
LSF+VT+ D
Sbjct: 747 CLSFKVTSRD 776
Score = 177 bits (381), Expect(3) = 4e-053
Identities = 82/130 (63%), Positives = 84/130 (64%)
Frame = -1 / -3
Query: 624 SLAVTRKESAWPTRMALDCQFWPQFLDMGSHPVLAALTLARTTSPAPATFVISTRLKYRK 445
SL VT KE W R L CQF PQ DM PV L SPAP T V STRLK
Sbjct: 775 SLEVTLKERHWRPRKVLLCQFMPQLRDMACQPVRVPLMNTERASPAPXTLVTSTRLK*EW 596
Query: 444 PLIVNRTPPDLRHGTRR*ETGTMPARYSAMWRNMGMARSKCGRGGLHQPPSSEGSA*LGG 265
PL+VNR PP HGT *ETGTMPARY AMWR G A SK GRGGLHQPPSS G *LGG
Sbjct: 595 PLMVNRMPPFFTHGTLL*ETGTMPARYCAMWRKAGSAMSKWGRGGLHQPPSSLGRP*LGG 416
Query: 264 QKLVAVTRME 235
QKLVAVT M+
Sbjct: 415 QKLVAVTMMD 386
Score = 104 bits (221), Expect(2) = 7e-029
Identities = 48/80 (60%), Positives = 52/80 (65%)
Frame = -3 / -2
Query: 595 LADEDGVGLPVLAPVPGHGQPPGAGRLDARAHHVPRAGHVRDQHQVEVPEAVDCEPHPAG 416
LA ++GV LPV APV GHG P GA D V A HV QHQVEV AVD EP
Sbjct: 746 LASQEGVALPVHAPVAGHGLPAGARAFDEHGARVAGAXHVGHQHQVEVGVAVDGEPDAPL 567
Query: 415 LAARHPAVGDGHDAGAVLGD 356
L ARHP+VGDG+DAGAVL D
Sbjct: 566 LHARHPSVGDGYDAGAVLRD 507
Score = 58.3 bits (121), Expect(3) = 2e-089
Identities = 20/31 (64%), Positives = 26/31 (83%)
Frame = +2 / +3
Query: 104 SQGYGVNNAALSTALFDEGLRCGACFEIRCE 196
S GYG N AALSTALF++G CG+C+E+RC+
Sbjct: 267 STGYGTNTAALSTALFNDGAACGSCYELRCD 359
Score = 57.0 bits (118), Expect(3) = 2e-089
Identities = 22/28 (78%), Positives = 22/28 (78%)
Frame = +1 / +3
Query: 28 AHATFYGGSDAFGFMGGACGYGNL*QPG 111
AHATFYGG DA G MGGACGYGNL G
Sbjct: 192 AHATFYGGGDASGTMGGACGYGNLYSTG 275
Score = 46.4 bits (95), Expect(2) = 7e-029
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = -1 / -3
Query: 177 HAPQRSPSSNSAVLSAALFTPYPWLSQVAVPAGP 76
H P +PS NSAVLSAA+F PYP L ++ P P
Sbjct: 340 HDPHAAPSLNSAVLSAAVFVPYPVLYRLPYPHAP 239
Score = 45.5 bits (93), Expect(3) = 4e-053
Identities = 19/28 (67%), Positives = 21/28 (75%)
Frame = -2 / -3
Query: 110 PGCHRLPYPQAPPIKPKASLPP*NVACA 27
P +RLPYP APPI P+AS PP* VA A
Sbjct: 274 PVLYRLPYPHAPPIVPEASPPP*KVAWA 191
Score = 24.4 bits (47), Expect(3) = 4e-053
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -2 / -1
Query: 140 CSAPRCSRRTPGC 102
CSAP CS RT C
Sbjct: 303 CSAPPCSCRTQCC 265
>gb|BG368084.2|BG368084 HVSMEi0015J17f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0015J17f, mRNA sequence
Length = 852
Score = 264 bits (572), Expect(2) = 2e-081
Identities = 103/129 (79%), Positives = 110/129 (85%)
Frame = +2 / +1
Query: 104 SQGYGVNNAALSTALFDEGLRCGACFEIRCEEQPGWRWCRPGRPSILVTATNFCPPNYAL 283
SQGYGVNNAALSTALF+EG CGACFEIRC QPGW WC PG+PSI+VTATNFCPPNYAL
Sbjct: 265 SQGYGVNNAALSTALFNEGQSCGACFEIRCVNQPGWAWCLPGKPSIVVTATNFCPPNYAL 444
Query: 284 PSDDGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRKSGGVRFTINGFRYFNL 463
PSDDGGWCNPPRPHFDLAMPMFLH+A+YRAGIVPV YRRV CRKSGGVRFTI + +L
Sbjct: 445 PSDDGGWCNPPRPHFDLAMPMFLHMAQYRAGIVPVCYRRVACRKSGGVRFTIERVQSSDL 624
Query: 464 VLITNVAGA 490
L GA
Sbjct: 625 RLEKTRRGA 651
Score = 234 bits (505), Expect = 7e-061
Identities = 100/138 (72%), Positives = 106/138 (76%)
Frame = -1 / -2
Query: 489 APATFVISTRLKYRKPLIVNRTPPDLRHGTRR*ETGTMPARYSAMWRNMGMARSKCGRGG 310
AP S R + +VNRTPPD RH TRR*+TGTMPARY AMWRNMGMARSK GRGG
Sbjct: 650 APLLVFSSLRSELCTRSMVNRTPPDFRHATRR*QTGTMPARYWAMWRNMGMARSKWGRGG 471
Query: 309 LHQPPSSEGSA*LGGQKLVAVTRMEGLPGRHHRHPGCSSHLISKHAPQRSPSSNSAVLSA 130
LHQPPSSEGSA*LGGQKLVAVT M+G PGRHH PG +H ISKHAPQ PS NSAVLSA
Sbjct: 470 LHQPPSSEGSA*LGGQKLVAVTTMDGFPGRHHAQPGWFTHRISKHAPQLCPSLNSAVLSA 291
Query: 129 ALFTPYPWLSQVAVPAGP 76
ALFTPYPWL + P P
Sbjct: 290 ALFTPYPWLYRFPYPHAP 237
Score = 58.8 bits (122), Expect(2) = 2e-081
Identities = 23/28 (82%), Positives = 23/28 (82%)
Frame = +1 / +1
Query: 28 AHATFYGGSDAFGFMGGACGYGNL*QPG 111
AHATFYGGSDA G MGGACGYGNL G
Sbjct: 190 AHATFYGGSDASGTMGGACGYGNLYSQG 273
>gb|CA006626.1|CA006626 HU05D17r HU Hordeum vulgare subsp. vulgare cDNA clone HU05D17
5-PRIME, mRNA sequence
Length = 534
Score = 230 bits (497), Expect(3) = 2e-080
Identities = 87/114 (76%), Positives = 96/114 (84%)
Frame = +2 / +3
Query: 236 SILVTATNFCPPNYALPSDDGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRK 415
SI +TATN CPPNYALP+DDGGWCNPPR HFD+A P +L I YRAGIVPVSYRRVPC K
Sbjct: 192 SITITATNLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVK 371
Query: 416 SGGVRFTINGFRYFNLVLITNVAGAGDVVRASVKAASTGWLPMSRNWGQNWQSN 577
GG+RFTING YFNLVL+TNVAGAGDV S+K +S+GW MSRNWGQNWQSN
Sbjct: 372 KGGMRFTINGHSYFNLVLVTNVAGAGDVQSVSIKGSSSGWQAMSRNWGQNWQSN 533
Score = 154 bits (331), Expect(3) = 9e-046
Identities = 72/111 (64%), Positives = 75/111 (67%)
Frame = -1 / -3
Query: 570 CQFWPQFLDMGSHPVLAALTLARTTSPAPATFVISTRLKYRKPLIVNRTPPDLRHGTRR* 391
CQFWPQ DM HP L L TSPAPAT V STRLK PL+VN PP GT R*
Sbjct: 526 CQFWPQLRDMACHPELDPLMETDCTSPAPATLVTSTRLK*EWPLMVNLIPPFFTQGTLR* 347
Query: 390 ETGTMPARYSAMWRNMGMARSKCGRGGLHQPPSSEGSA*LGGQKLVAVTRM 238
ETGTMPAR +WR G A SK RGGLHQPPSS GSA*LGGQ+LVAV M
Sbjct: 346 ETGTMPAR*IPIWR*AGSAMSKWARGGLHQPPSSLGSA*LGGQRLVAVMVM 194
Score = 112 bits (240), Expect(3) = 3e-030
Identities = 49/71 (69%), Positives = 51/71 (71%)
Frame = -3 / -2
Query: 577 VGLPVLAPVPGHGQPPGAGRLDARAHHVPRAGHVRDQHQVEVPEAVDCEPHPAGLAARHP 398
V LPVLAPV GHG PPGAG LD HV AGHV +HQVEV AVD EPHPA L HP
Sbjct: 533 VALPVLAPVAGHGLPPGAGPLDGDGLHVAGAGHVGHKHQVEVGVAVDGEPHPALLHTGHP 354
Query: 397 AVGDGHDAGAV 365
VG+GHDAGAV
Sbjct: 353 PVGNGHDAGAV 321
Score = 57.0 bits (118), Expect(3) = 2e-080
Identities = 19/31 (61%), Positives = 26/31 (83%)
Frame = +2 / +3
Query: 104 SQGYGVNNAALSTALFDEGLRCGACFEIRCE 196
S GYG N AALSTALF++G CG+C+E++C+
Sbjct: 78 STGYGTNTAALSTALFNDGAACGSCYELKCQ 170
Score = 51.5 bits (106), Expect(3) = 2e-080
Identities = 20/28 (71%), Positives = 20/28 (71%)
Frame = +1 / +3
Query: 28 AHATFYGGSDAFGFMGGACGYGNL*QPG 111
A TFYGG DA G MGGACGYGNL G
Sbjct: 3 ARGTFYGGGDASGTMGGACGYGNLYSTG 86
Score = 43.7 bits (89), Expect(3) = 9e-046
Identities = 21/39 (53%), Positives = 24/39 (61%)
Frame = -1 / -3
Query: 192 HLISKHAPQRSPSSNSAVLSAALFTPYPWLSQVAVPAGP 76
HL S H P +PS NSAVLSAA+F P P L + P P
Sbjct: 166 HLSS*HDPHAAPSLNSAVLSAAVFVP*PVLYRFP*PHAP 50
Score = 35.0 bits (70), Expect(3) = 3e-030
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = -2 / -3
Query: 110 PGCHRLPYPQAPPIKPKASLPP*NV 36
P +R P P APPI P AS PP* V
Sbjct: 85 PVLYRFP*PHAPPIVPDASPPP*KV 11
Score = 25.8 bits (50), Expect(3) = 3e-030
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -2 / -1
Query: 140 CSAPRCSRRTPGC 102
CSAP CS R P C
Sbjct: 114 CSAPPCSCRNPCC 76
Score = 24.4 bits (47), Expect(3) = 9e-046
Identities = 13/20 (65%), Positives = 13/20 (65%)
Frame = -1 / -2
Query: 99 QVAVPAGPAHKAKSVAAAVE 40
QV V A AH A VAAAVE
Sbjct: 74 QVPVAARAAHCAGRVAAAVE 15
>gb|CA001705.1|CA001705 HS05F12r HS Hordeum vulgare subsp. vulgare cDNA clone HS05F12
5-PRIME, mRNA sequence
Length = 520
Score = 244 bits (528), Expect(3) = 3e-079
Identities = 92/117 (78%), Positives = 98/117 (83%)
Frame = +2 / +1
Query: 236 SILVTATNFCPPNYALPSDDGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRK 415
SI+VTATNFCPPNY LPSDDGGWCNPPRPHFD+A P FLHIA+YRAGIVPVSYRRVPC K
Sbjct: 169 SIMVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSYRRVPCVK 348
Query: 416 SGGVRFTINGFRYFNLVLITNVAGAGDVVRASVKAASTGWLPMSRNWGQNWQSNAIL 586
GG+RFTING YFNLVL+TNVAGAGD S+K TGW MSRNWG NWQSN L
Sbjct: 349 KGGIRFTINGHSYFNLVLVTNVAGAGDARSVSIKGTRTGWQAMSRNWGMNWQSNTFL 519
Score = 165 bits (355), Expect(2) = 5e-048
Identities = 76/117 (64%), Positives = 78/117 (66%)
Frame = -1 / -3
Query: 585 RMALDCQFWPQFLDMGSHPVLAALTLARTTSPAPATFVISTRLKYRKPLIVNRTPPDLRH 406
R L CQF PQ DM PV L SPAPAT V STRLK PL+VNR PP H
Sbjct: 518 RKVLLCQFMPQLRDMACQPVRVPLMDTERASPAPATLVTSTRLK*EWPLMVNRMPPFFTH 339
Query: 405 GTRR*ETGTMPARYSAMWRNMGMARSKCGRGGLHQPPSSEGSA*LGGQKLVAVTRME 235
GT *ETGTMPARY AMWR G A SK GRGGLHQPPSS G *LGGQKLVAVT M+
Sbjct: 338 GTLL*ETGTMPARYCAMWRKAGSAMSKWGRGGLHQPPSSLGRP*LGGQKLVAVTMMD 168
Score = 105 bits (225), Expect(3) = 8e-027
Identities = 48/77 (62%), Positives = 52/77 (67%)
Frame = -3 / -2
Query: 586 EDGVGLPVLAPVPGHGQPPGAGRLDARAHHVPRAGHVRDQHQVEVPEAVDCEPHPAGLAA 407
++GV LPV APV GHG P GA LD V AGHV QHQVEV AVD EP L A
Sbjct: 519 QEGVALPVHAPVAGHGLPAGARALDGHGARVAGAGHVGHQHQVEVGVAVDGEPDAPLLHA 340
Query: 406 RHPAVGDGHDAGAVLGD 356
RHP+VGDG+DAGAVL D
Sbjct: 339 RHPSVGDGYDAGAVLRD 289
Score = 58.3 bits (121), Expect(3) = 3e-079
Identities = 20/31 (64%), Positives = 26/31 (83%)
Frame = +2 / +1
Query: 104 SQGYGVNNAALSTALFDEGLRCGACFEIRCE 196
S GYG N AALSTALF++G CG+C+E+RC+
Sbjct: 49 STGYGTNTAALSTALFNDGAACGSCYELRCD 141
Score = 46.4 bits (95), Expect(2) = 5e-048
Identities = 19/34 (55%), Positives = 23/34 (67%)
Frame = -1 / -3
Query: 177 HAPQRSPSSNSAVLSAALFTPYPWLSQVAVPAGP 76
H P +PS NSAVLSAA+F PYP L ++ P P
Sbjct: 122 HDPHAAPSLNSAVLSAAVFVPYPVLYRLPYPHAP 21
Score = 32.2 bits (64), Expect(3) = 3e-079
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = +1 / +1
Query: 64 GFMGGACGYGNL*QPG 111
G MGGACGYGNL G
Sbjct: 10 GTMGGACGYGNLYSTG 57
Score = 31.3 bits (62), Expect(3) = 8e-027
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -2 / -3
Query: 110 PGCHRLPYPQAPPIKP 63
P +RLPYP APPI P
Sbjct: 56 PVLYRLPYPHAPPIVP 9
Score = 24.4 bits (47), Expect(3) = 8e-027
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -2 / -1
Query: 140 CSAPRCSRRTPGC 102
CSAP CS RT C
Sbjct: 85 CSAPPCSCRTQCC 47
>gb|BJ454545.1|BJ454545 BJ454545 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak24n09 5', mRNA sequence
Length = 654
Score = 292 bits (633), Expect = 2e-078
Identities = 116/155 (74%), Positives = 127/155 (81%)
Frame = +2 / +1
Query: 236 SILVTATNFCPPNYALPSDDGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRK 415
SI +TATN CPPNYALP+DDGGWCNPPR HFD+A P +L I YRAGIVPVSYRRVPC K
Sbjct: 49 SITITATNLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVK 228
Query: 416 SGGVRFTINGFRYFNLVLITNVAGAGDVVRASVKAASTGWLPMSRNWGQNWQSNAILVGQ 595
GG+RFTING YFNLVL+TNVAGAGDV S+K +S+GW MSRNWGQNWQSNA L GQ
Sbjct: 229 KGGMRFTINGHSYFNLVLVTNVAGAGDVQSVSIKGSSSGWQAMSRNWGQNWQSNADLDGQ 408
Query: 596 ALSFRVTASDRRTSTSWNAAPSTWQFGQTFEGKNF 700
+LSFRVT SD RT TS NAAP+ W FGQTFEG F
Sbjct: 409 SLSFRVTLSDGRTVTSNNAAPAGWSFGQTFEGGQF 513
Score = 199 bits (430), Expect = 2e-050
Identities = 96/151 (63%), Positives = 100/151 (66%)
Frame = -1 / -2
Query: 690 PSKVWPNCQVLGAAFQEVEVRRSLAVTRKESAWPTRMALDCQFWPQFLDMGSHPVLAALT 511
PSKV P Q GAA V VR SL VTRKE WP+R AL CQFWPQ DM HP L L
Sbjct: 503 PSKVCPKDQPAGAALLLVTVRPSLRVTRKERLWPSRSALLCQFWPQLRDMACHPELDPLM 324
Query: 510 LARTTSPAPATFVISTRLKYRKPLIVNRTPPDLRHGTRR*ETGTMPARYSAMWRNMGMAR 331
TSPAPAT V STRLK PL+VN PP GT R*ETGTMPAR +WR G A
Sbjct: 323 ETDCTSPAPATLVTSTRLK*EWPLMVNLIPPFFTQGTLR*ETGTMPAR*IPIWR*AGSAM 144
Query: 330 SKCGRGGLHQPPSSEGSA*LGGQKLVAVTRM 238
SK RGGLHQPPSS GSA*LGGQ+LVAV M
Sbjct: 143 SKWARGGLHQPPSSLGSA*LGGQRLVAVMVM 51
Score = 115 bits (245), Expect = 5e-025
Identities = 52/77 (67%), Positives = 54/77 (70%)
Frame = -3 / -1
Query: 595 LADEDGVGLPVLAPVPGHGQPPGAGRLDARAHHVPRAGHVRDQHQVEVPEAVDCEPHPAG 416
LA E V LPVLAPV GHG PPGAG LD HV AGHV +HQVEV AVD EPHPA
Sbjct: 408 LAVEVRVALPVLAPVAGHGLPPGAGPLDGDGLHVAGAGHVGHKHQVEVGVAVDGEPHPAL 229
Query: 415 LAARHPAVGDGHDAGAV 365
L HP VG+GHDAGAV
Sbjct: 228 LHTGHPPVGNGHDAGAV 178
>gb|BJ462348.1|BJ462348 BJ462348 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak24n09 3', mRNA sequence
Length = 720
Score = 292 bits (633), Expect = 2e-078
Identities = 116/155 (74%), Positives = 127/155 (81%)
Frame = +2 / -3
Query: 236 SILVTATNFCPPNYALPSDDGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRK 415
SI +TATN CPPNYALP+DDGGWCNPPR HFD+A P +L I YRAGIVPVSYRRVPC K
Sbjct: 718 SITITATNLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVK 539
Query: 416 SGGVRFTINGFRYFNLVLITNVAGAGDVVRASVKAASTGWLPMSRNWGQNWQSNAILVGQ 595
GG+RFTING YFNLVL+TNVAGAGDV S+K +S+GW MSRNWGQNWQSNA L GQ
Sbjct: 538 KGGMRFTINGHSYFNLVLVTNVAGAGDVQSVSIKGSSSGWQAMSRNWGQNWQSNADLDGQ 359
Query: 596 ALSFRVTASDRRTSTSWNAAPSTWQFGQTFEGKNF 700
+LSFRVT SD RT TS NAAP+ W FGQTFEG F
Sbjct: 358 SLSFRVTLSDGRTVTSNNAAPAGWSFGQTFEGGQF 254
Score = 199 bits (430), Expect = 2e-050
Identities = 96/151 (63%), Positives = 100/151 (66%)
Frame = -1 / +3
Query: 690 PSKVWPNCQVLGAAFQEVEVRRSLAVTRKESAWPTRMALDCQFWPQFLDMGSHPVLAALT 511
PSKV P Q GAA V VR SL VTRKE WP+R AL CQFWPQ DM HP L L
Sbjct: 264 PSKVCPKDQPAGAALLLVTVRPSLRVTRKERLWPSRSALLCQFWPQLRDMACHPELDPLM 443
Query: 510 LARTTSPAPATFVISTRLKYRKPLIVNRTPPDLRHGTRR*ETGTMPARYSAMWRNMGMAR 331
TSPAPAT V STRLK PL+VN PP GT R*ETGTMPAR +WR G A
Sbjct: 444 ETDCTSPAPATLVTSTRLK*EWPLMVNLIPPFFTQGTLR*ETGTMPAR*IPIWR*AGSAM 623
Query: 330 SKCGRGGLHQPPSSEGSA*LGGQKLVAVTRM 238
SK RGGLHQPPSS GSA*LGGQ+LVAV M
Sbjct: 624 SKWARGGLHQPPSSLGSA*LGGQRLVAVMVM 716
Score = 115 bits (245), Expect = 5e-025
Identities = 52/77 (67%), Positives = 54/77 (70%)
Frame = -3 / +2
Query: 595 LADEDGVGLPVLAPVPGHGQPPGAGRLDARAHHVPRAGHVRDQHQVEVPEAVDCEPHPAG 416
LA E V LPVLAPV GHG PPGAG LD HV AGHV +HQVEV AVD EPHPA
Sbjct: 359 LAVEVRVALPVLAPVAGHGLPPGAGPLDGDGLHVAGAGHVGHKHQVEVGVAVDGEPHPAL 538
Query: 415 LAARHPAVGDGHDAGAV 365
L HP VG+GHDAGAV
Sbjct: 539 LHTGHPPVGNGHDAGAV 589
>gb|BF626312.1|BF626312 HVSMEa0018F04f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0018F04f, mRNA sequence
Length = 773
Score = 213 bits (459), Expect(3) = 8e-077
Identities = 80/111 (72%), Positives = 90/111 (81%)
Frame = +2 / +1
Query: 236 SILVTATNFCPPNYALPSDDGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRK 415
SI +TATN CPPNYALP+DDGGWCNPPR H D+A P +L I YRAGIVPVSYRRVPC K
Sbjct: 325 SITITATNLCPPNYALPNDDGGWCNPPRAHCDMAEPAYLQIGIYRAGIVPVSYRRVPCVK 504
Query: 416 SGGVRFTINGFRYFNLVLITNVAGAGDVVRASVKAASTGWLPMSRNWGQNW 568
GG+RFTING YFNLVL+TNVAGAGDV S+K +S+GW M +WGQNW
Sbjct: 505 KGGIRFTINGHSYFNLVLVTNVAGAGDVQSVSIKGSSSGWQAMCPHWGQNW 657
Score = 141 bits (303), Expect(3) = 5e-043
Identities = 69/110 (62%), Positives = 73/110 (66%)
Frame = -1 / -1
Query: 567 QFWPQFLDMGSHPVLAALTLARTTSPAPATFVISTRLKYRKPLIVNRTPPDLRHGTRR*E 388
QF PQ M HP L L TSPAPAT V STRLK PL+VN PP GT R*E
Sbjct: 656 QF*PQCGHMACHPELDPLMETDCTSPAPATLVTSTRLK*EWPLMVNLIPPFFTQGTLR*E 477
Query: 387 TGTMPARYSAMWRNMGMARSKCGRGGLHQPPSSEGSA*LGGQKLVAVTRM 238
TGTMPAR +WR G A S+C RGGLHQPPSS GSA*LGGQ+LVAV M
Sbjct: 476 TGTMPAR*IPIWR*AGSAMSQCARGGLHQPPSSLGSA*LGGQRLVAVMVM 327
Score = 99.6 bits (211), Expect(3) = 2e-028
Identities = 43/68 (63%), Positives = 47/68 (69%)
Frame = -3 / -3
Query: 568 PVLAPVPGHGQPPGAGRLDARAHHVPRAGHVRDQHQVEVPEAVDCEPHPAGLAARHPAVG 389
PVL PV HG PPGAG LD HV AGHV QHQVEV AV+ EP+P+ L HP VG
Sbjct: 657 PVLTPVRAHGLPPGAGPLDGDGLHVAGAGHVGHQHQVEVGVAVNGEPYPSLLHTGHPPVG 478
Query: 388 DGHDAGAV 365
+GHDAGAV
Sbjct: 477 NGHDAGAV 454
Score = 57.0 bits (118), Expect(3) = 8e-077
Identities = 19/31 (61%), Positives = 26/31 (83%)
Frame = +2 / +1
Query: 104 SQGYGVNNAALSTALFDEGLRCGACFEIRCE 196
S GYG N AALSTALF++G CG+C+E++C+
Sbjct: 211 STGYGTNTAALSTALFNDGAACGSCYELKCQ 303
Score = 57.0 bits (118), Expect(3) = 8e-077
Identities = 22/28 (78%), Positives = 22/28 (78%)
Frame = +1 / +1
Query: 28 AHATFYGGSDAFGFMGGACGYGNL*QPG 111
AHATFYGG DA G MGGACGYGNL G
Sbjct: 136 AHATFYGGGDASGTMGGACGYGNLYSTG 219
Score = 43.7 bits (89), Expect(3) = 5e-043
Identities = 21/39 (53%), Positives = 24/39 (61%)
Frame = -1 / -1
Query: 192 HLISKHAPQRSPSSNSAVLSAALFTPYPWLSQVAVPAGP 76
HL S H P +PS NSAVLSAA+F P P L + P P
Sbjct: 299 HLSS*HDPHAAPSLNSAVLSAAVFVP*PVLYRFP*PHAP 183
Score = 42.8 bits (87), Expect(3) = 2e-028
Identities = 18/28 (64%), Positives = 19/28 (67%)
Frame = -2 / -1
Query: 110 PGCHRLPYPQAPPIKPKASLPP*NVACA 27
P +R P P APPI P AS PP* VACA
Sbjct: 218 PVLYRFP*PHAPPIVPDASPPP*KVACA 135
Score = 28.1 bits (55), Expect(3) = 5e-043
Identities = 15/23 (65%), Positives = 15/23 (65%)
Frame = -1 / -3
Query: 99 QVAVPAGPAHKAKSVAAAVERGV 31
QV V A AH A VAAAVE GV
Sbjct: 207 QVPVAARAAHCAGRVAAAVEGGV 139
Score = 25.8 bits (50), Expect(3) = 2e-028
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -2 / -2
Query: 140 CSAPRCSRRTPGC 102
CSAP CS R P C
Sbjct: 247 CSAPPCSCRNPCC 209
>gb|BQ465629.1|BQ465629 HU04D11r HU Hordeum vulgare subsp. vulgare cDNA clone HU04D11
5-PRIME, mRNA sequence
Length = 625
Score = 281 bits (608), Expect = 5e-075
Identities = 111/149 (74%), Positives = 121/149 (81%)
Frame = +2 / +2
Query: 254 TNFCPPNYALPSDDGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRKSGGVRF 433
T CPPNYALP+DDGGWCNPPR HFD+A P +L I YRAGIVPVSYRRVPC K GG+RF
Sbjct: 5 TRLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRF 184
Query: 434 TINGFRYFNLVLITNVAGAGDVVRASVKAASTGWLPMSRNWGQNWQSNAILVGQALSFRV 613
TING YFNLVL+TNVAGAGDV S+K +S+GW MSRNWGQNWQSNA L GQ+LSFRV
Sbjct: 185 TINGHSYFNLVLVTNVAGAGDVQSVSIKGSSSGWQAMSRNWGQNWQSNADLDGQSLSFRV 364
Query: 614 TASDRRTSTSWNAAPSTWQFGQTFEGKNF 700
T SD RT TS NAAP+ W FGQTFEG F
Sbjct: 365 TLSDGRTVTSNNAAPAGWSFGQTFEGGQF 451
Score = 194 bits (419), Expect = 5e-049
Identities = 93/146 (63%), Positives = 96/146 (65%)
Frame = -1 / -2
Query: 690 PSKVWPNCQVLGAAFQEVEVRRSLAVTRKESAWPTRMALDCQFWPQFLDMGSHPVLAALT 511
PSKV P Q GAA V VR SL VTRKE WP+R AL CQFWPQ DM HP L L
Sbjct: 441 PSKVCPKDQPAGAALLLVTVRPSLRVTRKERLWPSRSALLCQFWPQLRDMACHPELDPLM 262
Query: 510 LARTTSPAPATFVISTRLKYRKPLIVNRTPPDLRHGTRR*ETGTMPARYSAMWRNMGMAR 331
TSPAPAT V STRLK PL+VN PP GT R*ETGTMPAR +WR G A
Sbjct: 261 ETDCTSPAPATLVTSTRLK*EWPLMVNLIPPFFTQGTLR*ETGTMPAR*IPIWR*AGSAM 82
Query: 330 SKCGRGGLHQPPSSEGSA*LGGQKLV 253
SK RGGLHQPPSS GSA*LGGQ LV
Sbjct: 81 SKWARGGLHQPPSSLGSA*LGGQSLV 4
Score = 115 bits (245), Expect = 5e-025
Identities = 52/77 (67%), Positives = 54/77 (70%)
Frame = -3 / -1
Query: 595 LADEDGVGLPVLAPVPGHGQPPGAGRLDARAHHVPRAGHVRDQHQVEVPEAVDCEPHPAG 416
LA E V LPVLAPV GHG PPGAG LD HV AGHV +HQVEV AVD EPHPA
Sbjct: 346 LAVEVRVALPVLAPVAGHGLPPGAGPLDGDGLHVAGAGHVGHKHQVEVGVAVDGEPHPAL 167
Query: 415 LAARHPAVGDGHDAGAV 365
L HP VG+GHDAGAV
Sbjct: 166 LHTGHPPVGNGHDAGAV 116
>gb|BF622346.3|BF622346 HVSMEa0002O08f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0002O08f, mRNA sequence
Length = 844
Score = 189 bits (407), Expect(4) = 2e-073
Identities = 71/87 (81%), Positives = 77/87 (88%)
Frame = +2 / +3
Query: 236 SILVTATNFCPPNYALPSDDGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRK 415
SI+VTATNFCPPNY LPSDDGGWCNPPRPH D+A P FLHIA+YRAGIVP+SYRRVPC K
Sbjct: 387 SIMVTATNFCPPNYGLPSDDGGWCNPPRPHLDMAEPAFLHIAQYRAGIVPLSYRRVPCVK 566
Query: 416 SGGVRFTINGFRYFNLVLITNVAGAGD 496
GG+RFTING Y NL L+TNVAGAGD
Sbjct: 567 KGGIRFTINGHSYLNLGLVTNVAGAGD 647
Score = 136 bits (291), Expect(3) = 7e-041
Identities = 63/95 (66%), Positives = 65/95 (68%)
Frame = -1 / -1
Query: 519 ALTLARTTSPAPATFVISTRLKYRKPLIVNRTPPDLRHGTRR*ETGTMPARYSAMWRNMG 340
AL SPAPAT V S R K PL+VNR PP HGT *E GTMPARY AMWR G
Sbjct: 670 ALDGPERASPAPATLVTSPRFK*EWPLMVNRMPPFFTHGTLL*ERGTMPARYCAMWRKAG 491
Query: 339 MARSKCGRGGLHQPPSSEGSA*LGGQKLVAVTRME 235
A SK GRGGLHQPPSS G *LGGQKLVAVT M+
Sbjct: 490 SAMSKWGRGGLHQPPSSLGRP*LGGQKLVAVTMMD 386
Score = 58.3 bits (121), Expect(4) = 2e-073
Identities = 20/31 (64%), Positives = 26/31 (83%)
Frame = +2 / +3
Query: 104 SQGYGVNNAALSTALFDEGLRCGACFEIRCE 196
S GYG N AALSTALF++G CG+C+E+RC+
Sbjct: 267 STGYGTNTAALSTALFNDGAACGSCYELRCD 359
Score = 57.0 bits (118), Expect(4) = 2e-073
Identities = 22/28 (78%), Positives = 22/28 (78%)
Frame = +1 / +3
Query: 28 AHATFYGGSDAFGFMGGACGYGNL*QPG 111
AHATFYGG DA G MGGACGYGNL G
Sbjct: 192 AHATFYGGGDASGTMGGACGYGNLYSTG 275
Score = 45.5 bits (93), Expect(3) = 7e-041
Identities = 19/28 (67%), Positives = 21/28 (75%)
Frame = -2 / -1
Query: 110 PGCHRLPYPQAPPIKPKASLPP*NVACA 27
P +RLPYP APPI P+AS PP* VA A
Sbjct: 274 PVLYRLPYPHAPPIVPEASPPP*KVAWA 191
Score = 29.5 bits (58), Expect(4) = 2e-073
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2 / +1
Query: 542 MSRNWGQNWQSNAILVG 592
MSR WG WQS +L G
Sbjct: 691 MSRTWGLTWQSTTLLGG 741
Score = 24.4 bits (47), Expect(3) = 7e-041
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -2 / -2
Query: 140 CSAPRCSRRTPGC 102
CSAP CS RT C
Sbjct: 303 CSAPPCSCRTQCC 265
>gb|CA005047.1|CA005047 HU12E04u HU Hordeum vulgare subsp. vulgare cDNA clone HU12E04
3-PRIME, mRNA sequence
Length = 529
Score = 275 bits (594), Expect = 4e-073
Identities = 109/145 (75%), Positives = 119/145 (82%)
Frame = +2 / +3
Query: 266 PPNYALPSDDGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRKSGGVRFTING 445
PPNYALP+DDGGWCNPPR HFD+A P +L I YRAGIVPVSYRRVPC K GG+RFTING
Sbjct: 3 PPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRFTING 182
Query: 446 FRYFNLVLITNVAGAGDVVRASVKAASTGWLPMSRNWGQNWQSNAILVGQALSFRVTASD 625
YFNLVL+TNVAGAGDV S+K +S+GW MSRNWGQNWQSNA L GQ+LSFRVT SD
Sbjct: 183 HSYFNLVLVTNVAGAGDVQSVSIKGSSSGWQAMSRNWGQNWQSNADLDGQSLSFRVTLSD 362
Query: 626 RRTSTSWNAAPSTWQFGQTFEGKNF 700
RT TS NAAP+ W FGQTFEG F
Sbjct: 363 GRTVTSNNAAPAGWSFGQTFEGGQF 437
Score = 188 bits (406), Expect = 3e-047
Identities = 90/142 (63%), Positives = 93/142 (65%)
Frame = -1 / -1
Query: 690 PSKVWPNCQVLGAAFQEVEVRRSLAVTRKESAWPTRMALDCQFWPQFLDMGSHPVLAALT 511
PSKV P Q GAA V VR SL VTRKE WP+R AL CQFWPQ DM HP L L
Sbjct: 427 PSKVCPKDQPAGAALLLVTVRPSLRVTRKERLWPSRSALLCQFWPQLRDMACHPELDPLM 248
Query: 510 LARTTSPAPATFVISTRLKYRKPLIVNRTPPDLRHGTRR*ETGTMPARYSAMWRNMGMAR 331
TSPAPAT V STRLK PL+VN PP GT R*ETGTMPAR +WR G A
Sbjct: 247 ETDCTSPAPATLVTSTRLK*EWPLMVNLIPPFFTQGTLR*ETGTMPAR*IPIWR*AGSAM 68
Query: 330 SKCGRGGLHQPPSSEGSA*LGG 265
SK RGGLHQPPSS GSA*LGG
Sbjct: 67 SKWARGGLHQPPSSLGSA*LGG 2
Score = 115 bits (245), Expect = 5e-025
Identities = 52/77 (67%), Positives = 54/77 (70%)
Frame = -3 / -3
Query: 595 LADEDGVGLPVLAPVPGHGQPPGAGRLDARAHHVPRAGHVRDQHQVEVPEAVDCEPHPAG 416
LA E V LPVLAPV GHG PPGAG LD HV AGHV +HQVEV AVD EPHPA
Sbjct: 332 LAVEVRVALPVLAPVAGHGLPPGAGPLDGDGLHVAGAGHVGHKHQVEVGVAVDGEPHPAL 153
Query: 415 LAARHPAVGDGHDAGAV 365
L HP VG+GHDAGAV
Sbjct: 152 LHTGHPPVGNGHDAGAV 102
>gb|CA031352.1|CA031352 HX09L09r HX Hordeum vulgare subsp. vulgare cDNA clone HX09L09
5-PRIME, mRNA sequence
Length = 631
Score = 172 bits (371), Expect(3) = 2e-070
Identities = 67/95 (70%), Positives = 76/95 (80%)
Frame = +2 / +3
Query: 236 SILVTATNFCPPNYALPSDDGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRK 415
S +VTATNFCPPN+ SD GGWCNPPR HFD++ P+F IA YRAGIVPVSYRRV C+K
Sbjct: 123 STVVTATNFCPPNFGESSDAGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSYRRVACQK 302
Query: 416 SGGVRFTINGFRYFNLVLITNVAGAGDVVRASVKA 520
GG+RFTING YFNLVL+TNV G GDV SVK+
Sbjct: 303 KGGIRFTINGHSYFNLVLVTNVGGPGDVHAVSVKS 407
Score = 124 bits (265), Expect(2) = 2e-036
Identities = 60/94 (63%), Positives = 63/94 (67%)
Frame = -1 / -1
Query: 516 LTLARTTSPAPATFVISTRLKYRKPLIVNRTPPDLRHGTRR*ETGTMPARYSAMWRNMGM 337
LT TSP P T V STRLKY PLIVN PP H T R*ETGTMPAR SAM G
Sbjct: 403 LTDTACTSPGPPTLVTSTRLKYEWPLIVNLMPPFFWHATLR*ETGTMPAR*SAMRWKTGW 224
Query: 336 ARSKCGRGGLHQPPSSEGSA*LGGQKLVAVTRME 235
SK RGGLHQPP+S+ S LGGQKLVAVT +E
Sbjct: 223 DMSKWARGGLHQPPASDDSPKLGGQKLVAVTTVE 122
Score = 92.7 bits (196), Expect(3) = 2e-070
Identities = 36/59 (61%), Positives = 41/59 (69%)
Frame = +2 / +3
Query: 524 STGWLPMSRNWGQNWQSNAILVGQALSFRVTASDRRTSTSWNAAPSTWQFGQTFEGKNF 700
S W +SRNWGQNWQSNA+L GQ LSFRVTA + ++ S NA P W FGQTF G F
Sbjct: 414 SAAWQALSRNWGQNWQSNALLDGQGLSFRVTAGNGQSVVSNNAVPRGWSFGQTFSGAQF 590
Score = 48.7 bits (100), Expect(2) = 2e-036
Identities = 24/53 (45%), Positives = 26/53 (49%)
Frame = -1 / -1
Query: 690 PSKVWPNCQVLGAAFQEVEVRRSLAVTRKESAWPTRMALDCQFWPQFLDMGSH 532
P KVWPN Q G A E AVTR E P+ AL CQF PQ + H
Sbjct: 580 PLKVWPNDQPRGTALLETTDWPLPAVTRNERPCPSSSALLCQFCPQLRESACH 422
Score = 40.5 bits (82), Expect(3) = 2e-070
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +2 / +3
Query: 143 ALFDEGLRCGACFEIRCE 196
ALF+ GL CGACFE+RC+
Sbjct: 24 ALFNNGLSCGACFEVRCD 77
>gb|BI960235.1|BI960235 HVSMEn0023N12f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023N12f, mRNA sequence
Length = 667
Score = 211 bits (455), Expect(3) = 5e-069
Identities = 86/131 (65%), Positives = 96/131 (73%)
Frame = +2 / +1
Query: 266 PPNYALPSDDGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRKSGGVRFTING 445
P DDGGWCNPPR HFD+A P +L I YRAGIVPVSYRRVPC K GG+RFTING
Sbjct: 160 PAQLRAAEDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVKKGGMRFTING 339
Query: 446 FRYFNLVLITNVAGAGDVVRASVKAASTGWLPMSRNWGQNWQSNAILVGQALSFRVTASD 625
YFNLVL+TNVAGAGDV S+K +S+GW M WG NWQSNA L GQ+LSF+VT +
Sbjct: 340 HSYFNLVLVTNVAGAGDVQSVSIKGSSSGWQAMFPQWGHNWQSNADLDGQSLSFQVTLTY 519
Query: 626 RRTSTSWNAAP 658
RR T NAAP
Sbjct: 520 RRDVTINNAAP 552
Score = 141 bits (302), Expect(3) = 8e-042
Identities = 70/126 (55%), Positives = 76/126 (60%)
Frame = -1 / -3
Query: 657 GAAFQEVEVRRSLAVTRKESAWPTRMALDCQFWPQFLDMGSHPVLAALTLARTTSPAPAT 478
GAA V RR + VT KE P+R AL CQ WP +M HP L L TSPAPAT
Sbjct: 551 GAALLMVTSRR*VRVT*KERL*PSRSALLCQLWPHCGNMACHPELDPLMETDCTSPAPAT 372
Query: 477 FVISTRLKYRKPLIVNRTPPDLRHGTRR*ETGTMPARYSAMWRNMGMARSKCGRGGLHQP 298
V STRLK PL+VN PP GT R*ETGTMPAR +WR G A SK RGGLHQP
Sbjct: 371 LVTSTRLK*EWPLMVNLIPPFFTQGTLR*ETGTMPAR*IPIWR*AGSAMSKWARGGLHQP 192
Query: 297 PSSEGS 280
PSS +
Sbjct: 191 PSSSAA 174
Score = 106 bits (227), Expect(2) = 1e-022
Identities = 48/77 (62%), Positives = 52/77 (67%)
Frame = -3 / -2
Query: 595 LADEDGVGLPVLAPVPGHGQPPGAGRLDARAHHVPRAGHVRDQHQVEVPEAVDCEPHPAG 416
L E V LPV+AP+ HG PPGAG LD HV AGHV +HQVEV AVD EPHPA
Sbjct: 489 LTVEVRVALPVMAPLREHGLPPGAGPLDGDGLHVAGAGHVGHKHQVEVGVAVDGEPHPAL 310
Query: 415 LAARHPAVGDGHDAGAV 365
L HP VG+GHDAGAV
Sbjct: 309 LHTGHPPVGNGHDAGAV 259
Score = 52.8 bits (109), Expect(3) = 5e-069
Identities = 18/31 (58%), Positives = 25/31 (80%)
Frame = +2 / +2
Query: 104 SQGYGVNNAALSTALFDEGLRCGACFEIRCE 196
S G G N AALSTALF++G CG+C+E++C+
Sbjct: 17 STGCGTNTAALSTALFNDGAACGSCYELKCQ 109
Score = 42.8 bits (87), Expect(3) = 8e-042
Identities = 19/30 (63%), Positives = 21/30 (70%)
Frame = -1 / -2
Query: 192 HLISKHAPQRSPSSNSAVLSAALFTPYPWL 103
HL S H P +PS NSAVLSAA+F P P L
Sbjct: 105 HLSS*HDPHAAPSLNSAVLSAAVFVPQPVL 16
Score = 36.8 bits (74), Expect(3) = 5e-069
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +2 / +2
Query: 236 SILVTATNFCPPNYAL 283
SI +TATN CPPNYAL
Sbjct: 131 SITITATNLCPPNYAL 178
Score = 25.4 bits (49), Expect(3) = 8e-042
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = -1 / -2
Query: 282 SA*LGGQKLVAVTRM 238
SA*LGGQ+LVAV M
Sbjct: 177 SA*LGGQRLVAVMVM 133
Score = 22.1 bits (42), Expect(2) = 1e-022
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -2 / -3
Query: 140 CSAPRCSRRTPGC 102
CSAP CS R C
Sbjct: 53 CSAPPCSSRNLCC 15
>gb|BI958334.1|BI958334 HVSMEn0014H08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0014H08f, mRNA sequence
Length = 634
Score = 186 bits (400), Expect(3) = 9e-069
Identities = 71/94 (75%), Positives = 79/94 (84%)
Frame = +2 / +3
Query: 236 SILVTATNFCPPNYALPSDDGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRK 415
SI +TATN CPPNYALP+DDGGWCNPPR HFD+A P +L I YRAGIVPVSYRRVPC K
Sbjct: 348 SITITATNLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVK 527
Query: 416 SGGVRFTINGFRYFNLVLITNVAGAGDVVRASVK 517
GG+RFTING YFNLVL+TNVAGAGDV S++
Sbjct: 528 KGGMRFTINGHSYFNLVLVTNVAGAGDVQSVSIR 629
Score = 126 bits (269), Expect(3) = 2e-038
Identities = 60/87 (68%), Positives = 63/87 (72%)
Frame = -1 / -1
Query: 498 TSPAPATFVISTRLKYRKPLIVNRTPPDLRHGTRR*ETGTMPARYSAMWRNMGMARSKCG 319
TSPAPAT V STRLK PL+VN PP GT R*ETGTMPAR +WR G A SK
Sbjct: 610 TSPAPATLVTSTRLK*EWPLMVNLIPPFFTQGTLR*ETGTMPAR*IPIWR*AGSAMSKWA 431
Query: 318 RGGLHQPPSSEGSA*LGGQKLVAVTRM 238
RGGLHQPPSS GSA*LGGQ+LVAV M
Sbjct: 430 RGGLHQPPSSLGSA*LGGQRLVAVMVM 350
Score = 57.0 bits (118), Expect(3) = 9e-069
Identities = 19/31 (61%), Positives = 26/31 (83%)
Frame = +2 / +3
Query: 104 SQGYGVNNAALSTALFDEGLRCGACFEIRCE 196
S GYG N AALSTALF++G CG+C+E++C+
Sbjct: 234 STGYGTNTAALSTALFNDGAACGSCYELKCQ 326
Score = 57.0 bits (118), Expect(3) = 9e-069
Identities = 22/28 (78%), Positives = 22/28 (78%)
Frame = +1 / +3
Query: 28 AHATFYGGSDAFGFMGGACGYGNL*QPG 111
AHATFYGG DA G MGGACGYGNL G
Sbjct: 159 AHATFYGGGDASGTMGGACGYGNLYSTG 242
Score = 43.7 bits (89), Expect(3) = 2e-038
Identities = 21/39 (53%), Positives = 24/39 (61%)
Frame = -1 / -1
Query: 192 HLISKHAPQRSPSSNSAVLSAALFTPYPWLSQVAVPAGP 76
HL S H P +PS NSAVLSAA+F P P L + P P
Sbjct: 322 HLSS*HDPHAAPSLNSAVLSAAVFVP*PVLYRFP*PHAP 206
Score = 28.1 bits (55), Expect(3) = 2e-038
Identities = 15/23 (65%), Positives = 15/23 (65%)
Frame = -1 / -3
Query: 99 QVAVPAGPAHKAKSVAAAVERGV 31
QV V A AH A VAAAVE GV
Sbjct: 230 QVPVAARAAHCAGRVAAAVEGGV 162
>gb|BQ766646.1|BQ766646 EBro08_SQ006_P15_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ006_P15 5', mRNA sequence
Length = 454
Score = 258 bits (558), Expect = 4e-068
Identities = 103/150 (68%), Positives = 117/150 (78%)
Frame = +2 / +1
Query: 236 SILVTATNFCPPNYALPSDDGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRK 415
S +VTATN CP NYA ++DGGWCNPP+ HFDLA P+F IA+ RAG+VPV YRRV C K
Sbjct: 4 SAMVTATNLCPANYARANNDGGWCNPPQSHFDLAEPVFTRIAQARAGVVPVQYRRVACVK 183
Query: 416 SGGVRFTINGFRYFNLVLITNVAGAGDVVRASVKAASTGWLPMSRNWGQNWQSNAILVGQ 595
+GG+RFTI G YFNLVLITNVAGAGD++ VKA STGWL MS NWG NWQ+ A+L GQ
Sbjct: 184 TGGIRFTITGHSYFNLVLITNVAGAGDLMSVYVKAPSTGWLTMSHNWGANWQNGAMLNGQ 363
Query: 596 ALSFRVTASDRRTSTSWNAAPSTWQFGQTF 685
LSFRVT SD RT+TS N AP W FGQTF
Sbjct: 364 PLSFRVTTSDGRTTTSNNVAPYGWTFGQTF 453
Score = 176 bits (378), Expect = 2e-043
Identities = 86/150 (57%), Positives = 93/150 (62%)
Frame = -1 / -3
Query: 684 KVWPNCQVLGAAFQEVEVRRSLAVTRKESAWPTRMALDCQFWPQFLDMGSHPVLAALTLA 505
KVWP Q GA +V VR SL VTRK+S WP MA CQ PQ M SHPVL A T
Sbjct: 452 KVWPKVQP*GATLLDVVVRPSLVVTRKDSGWPLSMAPFCQLAPQLWLMVSHPVLGAFTYT 273
Query: 504 RTTSPAPATFVISTRLKYRKPLIVNRTPPDLRHGTRR*ETGTMPARYSAMWRNMGMARSK 325
SPAPAT V+STRLK P++VNR PP L H T TGT PAR A+ N G ARSK
Sbjct: 272 DIRSPAPATLVMSTRLK*EWPVMVNRMPPVLTHATLLYWTGTTPARAWAILVNTGSARSK 93
Query: 324 CGRGGLHQPPSSEGSA*LGGQKLVAVTRME 235
C GGLH PPS A*L GQ+LVAVT E
Sbjct: 92 CDCGGLHHPPSLLARA*LAGQRLVAVTMAE 3
>gb|BQ768669.1|BQ768669 EBro08_SQ012_H11_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ012_H11 5', mRNA sequence
Length = 590
Score = 184 bits (396), Expect(3) = 1e-067
Identities = 70/88 (79%), Positives = 76/88 (86%)
Frame = +2 / +2
Query: 236 SILVTATNFCPPNYALPSDDGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRK 415
SI +TATN CPPNYALP+DDGGWCNPPR HFD+A P +L I YRAGIVPVSYRRVPC K
Sbjct: 326 SITITATNLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVK 505
Query: 416 SGGVRFTINGFRYFNLVLITNVAGAGDV 499
GG+RFTING YFNLVL+TNVAGAGDV
Sbjct: 506 KGGIRFTINGHSYFNLVLVTNVAGAGDV 589
Score = 131 bits (280), Expect(3) = 5e-039
Identities = 61/87 (70%), Positives = 64/87 (73%)
Frame = -1 / -3
Query: 498 TSPAPATFVISTRLKYRKPLIVNRTPPDLRHGTRR*ETGTMPARYSAMWRNMGMARSKCG 319
TSPAPAT V STRLK PL+VN PP GT R*ETGTMPAR +WR G A SKC
Sbjct: 588 TSPAPATLVTSTRLK*EWPLMVNLIPPFFTQGTLR*ETGTMPAR*IPIWR*AGSAMSKCA 409
Query: 318 RGGLHQPPSSEGSA*LGGQKLVAVTRM 238
RGGLHQPPSS GSA*LGGQ+LVAV M
Sbjct: 408 RGGLHQPPSSLGSA*LGGQRLVAVMVM 328
Score = 57.0 bits (118), Expect(3) = 1e-067
Identities = 19/31 (61%), Positives = 26/31 (83%)
Frame = +2 / +2
Query: 104 SQGYGVNNAALSTALFDEGLRCGACFEIRCE 196
S GYG N AALSTALF++G CG+C+E++C+
Sbjct: 212 STGYGTNTAALSTALFNDGAACGSCYELKCQ 304
Score = 55.1 bits (114), Expect(3) = 1e-067
Identities = 21/28 (75%), Positives = 22/28 (78%)
Frame = +1 / +2
Query: 28 AHATFYGGSDAFGFMGGACGYGNL*QPG 111
AHATFYGG +A G MGGACGYGNL G
Sbjct: 137 AHATFYGGGEASGTMGGACGYGNLYSTG 220
Score = 42.8 bits (87), Expect(3) = 5e-039
Identities = 18/28 (64%), Positives = 19/28 (67%)
Frame = -2 / -3
Query: 110 PGCHRLPYPQAPPIKPKASLPP*NVACA 27
P +R P P APPI P AS PP* VACA
Sbjct: 219 PVLYRFP*PHAPPIVPDASPPP*KVACA 136
Score = 25.8 bits (50), Expect(3) = 5e-039
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -2 / -1
Query: 140 CSAPRCSRRTPGC 102
CSAP CS R P C
Sbjct: 248 CSAPPCSCRNPCC 210
>gb|BF253497.3|BF253497 HVSMEf0001B16f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0001B16f, mRNA sequence
Length = 574
Score = 219 bits (473), Expect(2) = 6e-067
Identities = 89/153 (58%), Positives = 106/153 (69%)
Frame = +2 / +1
Query: 236 SILVTATNFCPPNYALPSDDGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRK 415
SI +TATN CPPNYALP+DDGGWCNPPR HFD+A P +L I YRAGIVPVSYRRVPC K
Sbjct: 112 SITITATNLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVK 291
Query: 416 SGGVRFTINGFRYFNLVLITNVAGAGDVVRASVKAASTGWLPMSRNWGQNWQSNAILVGQ 595
GG+RFTING YFNLVL+TNVAGAGDV S+K + G P+ + + + +
Sbjct: 292 KGGMRFTINGHSYFNLVLVTNVAGAGDVQSVSIKGPAPGGGPVPQLGPELAKQRRTSTAR 471
Query: 596 ALSFRVTASDRRTSTSWNAAPSTWQFGQTFEGK 694
SF + STS +APS W FGQTF+G+
Sbjct: 472 GCSFGSPLAKAEPSTSTTSAPSRWSFGQTFQGR 570
Score = 126 bits (269), Expect(3) = 8e-040
Identities = 60/87 (68%), Positives = 63/87 (72%)
Frame = -1 / -3
Query: 498 TSPAPATFVISTRLKYRKPLIVNRTPPDLRHGTRR*ETGTMPARYSAMWRNMGMARSKCG 319
TSPAPAT V STRLK PL+VN PP GT R*ETGTMPAR +WR G A SK
Sbjct: 374 TSPAPATLVTSTRLK*EWPLMVNLIPPFFTQGTLR*ETGTMPAR*IPIWR*AGSAMSKWA 195
Query: 318 RGGLHQPPSSEGSA*LGGQKLVAVTRM 238
RGGLHQPPSS GSA*LGGQ+LVAV M
Sbjct: 194 RGGLHQPPSSLGSA*LGGQRLVAVMVM 114
Score = 55.6 bits (115), Expect(2) = 6e-067
Identities = 18/29 (62%), Positives = 25/29 (86%)
Frame = +2 / +1
Query: 110 GYGVNNAALSTALFDEGLRCGACFEIRCE 196
GYG N AALSTALF++G CG+C+E++C+
Sbjct: 4 GYGTNTAALSTALFNDGAACGSCYELKCQ 90
Score = 40.9 bits (83), Expect(3) = 8e-040
Identities = 18/28 (64%), Positives = 20/28 (71%)
Frame = -1 / -3
Query: 192 HLISKHAPQRSPSSNSAVLSAALFTPYP 109
HL S H P +PS NSAVLSAA+F P P
Sbjct: 86 HLSS*HDPHAAPSLNSAVLSAAVFVP*P 3
Score = 35.4 bits (71), Expect(3) = 8e-040
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = -1 / -1
Query: 633 VRRSLAVTRKESAWPTRMALDCQFWPQFLDMGSHPVLAAL 514
VR SL VTRK S WP++ A+ G HP L L
Sbjct: 508 VRPSLRVTRKNSLWPSKSAVALPVLAPVAGQGLHPELDPL 389
>gb|BQ760682.1|BQ760682 EBro03_SQ003_C23_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ003_C23 5', mRNA sequence
Length = 594
Score = 164 bits (352), Expect(4) = 1e-065
Identities = 61/98 (62%), Positives = 75/98 (76%)
Frame = +2 / +1
Query: 236 SILVTATNFCPPNYALPSDDGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRK 415
++ VTATNFCPPN ALP+D+GGWCNPPRPHFD+A P + I YR GI+PV Y+RVPC K
Sbjct: 187 TVTVTATNFCPPNNALPNDNGGWCNPPRPHFDMAQPAWEKIGVYRGGIIPVMYQRVPCVK 366
Query: 416 SGGVRFTINGFRYFNLVLITNVAGAGDVVRASVKAAST 529
GGVRF +NG YFNLVL++NVA AG + VK + +
Sbjct: 367 RGGVRFKMNGHDYFNLVLVSNVAAAGSIQSMDVKCSDS 480
Score = 101 bits (216), Expect(2) = 1e-027
Identities = 50/91 (54%), Positives = 55/91 (60%)
Frame = -1 / -2
Query: 516 LTLARTTSPAPATFVISTRLKYRKPLIVNRTPPDLRHGTRR*ETGTMPARYSAMWRNMGM 337
LT PA AT + STRLK P I+N TPP HGT TG MP + ++ G
Sbjct: 467 LTSMDWIEPAAATLLTSTRLK*S*PFILNLTPPRFTHGTLWYMTGMMPPL*TPIFSQAGC 288
Query: 336 ARSKCGRGGLHQPPSSEGSA*LGGQKLVAVT 244
A SKCGRGGLHQPP S G A LGGQK VAVT
Sbjct: 287 AMSKCGRGGLHQPPLSLGRALLGGQKFVAVT 195
Score = 56.5 bits (117), Expect(4) = 1e-065
Identities = 21/37 (56%), Positives = 26/37 (70%)
Frame = +2 / +1
Query: 524 STGWLPMSRNWGQNWQSNAILVGQALSFRVTASDRRT 634
S W+PM+RNWG NW S A L G+ L+FR+T SD T
Sbjct: 478 SEDWMPMARNWGANWHSLANLTGKMLAFRLTNSDGHT 588
Score = 51.0 bits (105), Expect(4) = 1e-065
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = +2 / +1
Query: 104 SQGYGVNNAALSTALFDEGLRCGACFEIRCEEQ 202
S+GYG AALST LF++G CG C++I C+ +
Sbjct: 55 SEGYGTRTAALSTVLFNDGAACGQCYKIACDRK 153
Score = 41.8 bits (85), Expect(2) = 1e-027
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = -1 / -2
Query: 195 SHLISKHAPQRSPSSNSAVLSAALFTPYPWLSQVAVPAGP 76
SH I H PQ +PS N+ VL AA+ PYP ++ P P
Sbjct: 146 SHAIL*HCPQAAPSLNNTVLRAAVRVPYPSEKRLPYPHAP 27
Score = 35.9 bits (72), Expect(4) = 1e-065
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = +1 / +1
Query: 49 GSDAFGFMGGACGYGNL*QPG 111
G+DA MGGACGYGNL G
Sbjct: 1 GADASDTMGGACGYGNLFSEG 63
>gb|CA024803.1|CA024803 HZ50F17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ50F17
5-PRIME, mRNA sequence
Length = 519
Score = 172 bits (371), Expect(3) = 6e-065
Identities = 67/95 (70%), Positives = 76/95 (80%)
Frame = +2 / +2
Query: 236 SILVTATNFCPPNYALPSDDGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRK 415
S +VTATNFCPPN+ SD GGWCNPPR HFD++ P+F IA YRAGIVPVSYRRV C+K
Sbjct: 119 STVVTATNFCPPNFGESSDAGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSYRRVACQK 298
Query: 416 SGGVRFTINGFRYFNLVLITNVAGAGDVVRASVKA 520
GG+RFTING YFNLVL+TNV G GDV SVK+
Sbjct: 299 KGGIRFTINGHSYFNLVLVTNVGGPGDVHAVSVKS 403
Score = 124 bits (265), Expect(3) = 5e-035
Identities = 60/94 (63%), Positives = 63/94 (67%)
Frame = -1 / -1
Query: 516 LTLARTTSPAPATFVISTRLKYRKPLIVNRTPPDLRHGTRR*ETGTMPARYSAMWRNMGM 337
LT TSP P T V STRLKY PLIVN PP H T R*ETGTMPAR SAM G
Sbjct: 399 LTDTACTSPGPPTLVTSTRLKYEWPLIVNLMPPFFWHATLR*ETGTMPAR*SAMRWKTGW 220
Query: 336 ARSKCGRGGLHQPPSSEGSA*LGGQKLVAVTRME 235
SK RGGLHQPP+S+ S LGGQKLVAVT +E
Sbjct: 219 DMSKWARGGLHQPPASDDSPKLGGQKLVAVTTVE 118
Score = 64.3 bits (134), Expect(3) = 6e-065
Identities = 24/34 (70%), Positives = 27/34 (79%)
Frame = +2 / +2
Query: 524 STGWLPMSRNWGQNWQSNAILVGQALSFRVTASD 625
S W +SRNWGQNWQSNA+L GQ LSFRVTA +
Sbjct: 410 SAAWQALSRNWGQNWQSNALLDGQGLSFRVTAGN 511
Score = 50.1 bits (103), Expect(3) = 6e-065
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = +2 / +2
Query: 128 AALSTALFDEGLRCGACFEIRCE 196
AALSTALF+ GL CGACFE+RC+
Sbjct: 5 AALSTALFNNGLSCGACFEVRCD 73
Score = 32.7 bits (65), Expect(3) = 5e-035
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1 / -1
Query: 618 AVTRKESAWPTRMALDCQFWPQFLDMGSH 532
AVTR E P+ AL CQF PQ + H
Sbjct: 504 AVTRNERPCPSSSALLCQFCPQLRESACH 418
Score = 29.5 bits (58), Expect(3) = 5e-035
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -1 / -1
Query: 195 SHLISKHAPQRSPSSNSAVLSAAL 124
SH SK APQ P SAVL AA+
Sbjct: 72 SHRTSKQAPQLRPLLKSAVLRAAV 1
>gb|BU990530.1|BU990530 HF25F05r HF Hordeum vulgare subsp. vulgare cDNA clone HF25F05
5-PRIME, mRNA sequence
Length = 515
Score = 238 bits (515), Expect = 3e-062
Identities = 95/137 (69%), Positives = 106/137 (77%)
Frame = +2 / +1
Query: 290 DDGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRKSGGVRFTINGFRYFNLVL 469
DDGGWCNPP+ HFDLA P+F IA+ RAG+VPV YRRV C K+GG+RFTI G YFNLVL
Sbjct: 10 DDGGWCNPPQSHFDLAEPVFTRIAQARAGVVPVQYRRVACVKTGGIRFTITGHSYFNLVL 189
Query: 470 ITNVAGAGDVVRASVKAASTGWLPMSRNWGQNWQSNAILVGQALSFRVTASDRRTSTSWN 649
ITNVAGAGD++ VKA STGWL MS NWG NWQ+ A+L GQ LSFRVT SD RT+TS N
Sbjct: 190 ITNVAGAGDLMSVYVKAPSTGWLTMSHNWGANWQNGAMLNGQPLSFRVTTSDGRTTTSNN 369
Query: 650 AAPSTWQFGQTFEGKNF 700
AP W FGQTF G F
Sbjct: 370 VAPYGWTFGQTFAGSQF 420
Score = 165 bits (355), Expect = 4e-040
Identities = 78/136 (57%), Positives = 86/136 (63%)
Frame = -1 / -1
Query: 696 FLPSKVWPNCQVLGAAFQEVEVRRSLAVTRKESAWPTRMALDCQFWPQFLDMGSHPVLAA 517
+LP+KVWP Q GA +V VR SL VTRK+S WP MA CQ PQ M SHPVL A
Sbjct: 416 WLPAKVWPKVQP*GATLLDVVVRPSLVVTRKDSGWPLSMAPFCQLAPQLWLMVSHPVLGA 237
Query: 516 LTLARTTSPAPATFVISTRLKYRKPLIVNRTPPDLRHGTRR*ETGTMPARYSAMWRNMGM 337
T SPAPAT V+STRLK P++VNR PP L H T TGT PAR A+ N G
Sbjct: 236 FTYTDIRSPAPATLVMSTRLK*EWPVMVNRMPPVLTHATLLYWTGTTPARAWAILVNTGS 57
Query: 336 ARSKCGRGGLHQPPSS 289
ARSKC GGLH PPSS
Sbjct: 56 ARSKCDCGGLHHPPSS 9
>gb|BQ766938.1|BQ766938 EBro08_SQ007_D18_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ007_D18 5', mRNA sequence
Length = 629
Score = 172 bits (370), Expect(3) = 3e-062
Identities = 65/104 (62%), Positives = 82/104 (78%)
Frame = +2 / +3
Query: 236 SILVTATNFCPPNYALPSDDGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRK 415
SI +TATNFCPPNYAL SD+GGWCNPPR HFD++ P + IA Y+AGIVPV+Y+RVPC++
Sbjct: 318 SITITATNFCPPNYALASDNGGWCNPPRQHFDMSQPAWETIAIYQAGIVPVNYKRVPCQR 497
Query: 416 SGGVRFTINGFRYFNLVLITNVAGAGDVVRASVKAASTGWLPMS 547
SGG+RFTING YF LV + NV G+G V + +K + T W+ MS
Sbjct: 498 SGGMRFTINGNDYFELVTVANVGGSGVVSQMWIKGSKTDWMVMS 629
Score = 93.2 bits (197), Expect(2) = 2e-025
Identities = 49/88 (55%), Positives = 53/88 (60%)
Frame = -1 / -2
Query: 498 TSPAPATFVISTRLKYRKPLIVNRTPPDLRHGTRR*ETGTMPARYSAMWRNMGMARSKCG 319
T+P P TF T K PL+VN PP L GT * TGTMPA AM + G SKC
Sbjct: 580 TTPLPPTFATVTSSK*SFPLMVNLMPPLLWQGTLL*LTGTMPAW*MAMVSHAGCDMSKCC 401
Query: 318 RGGLHQPPSSEGSA*LGGQKLVAVTRME 235
RGGLH PP S A*LGGQKLVAV M+
Sbjct: 400 RGGLHHPPLSLARA*LGGQKLVAVMVMD 317
Score = 54.2 bits (112), Expect(3) = 3e-062
Identities = 20/29 (68%), Positives = 23/29 (79%)
Frame = +2 / +3
Query: 110 GYGVNNAALSTALFDEGLRCGACFEIRCE 196
GYGVN+AALSTALF+ G CG CF I C+
Sbjct: 198 GYGVNSAALSTALFNNGASCGMCFTITCD 284
Score = 51.5 bits (106), Expect(3) = 3e-062
Identities = 21/28 (75%), Positives = 21/28 (75%)
Frame = +1 / +3
Query: 28 AHATFYGGSDAFGFMGGACGYGNL*QPG 111
A ATFYGGSDA MGGACGYGNL G
Sbjct: 117 AFATFYGGSDASDTMGGACGYGNLYNAG 200
Score = 45.5 bits (93), Expect(2) = 2e-025
Identities = 18/28 (64%), Positives = 21/28 (75%)
Frame = -2 / -2
Query: 110 PGCHRLPYPQAPPIKPKASLPP*NVACA 27
P ++ PYP APPI +ASLPP*NVA A
Sbjct: 199 PALYKFPYPHAPPIVSEASLPP*NVANA 116
>gb|BI957345.1|BI957345 HVSMEn0009B08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009B08f, mRNA sequence
Length = 651
Score = 172 bits (371), Expect(3) = 6e-062
Identities = 67/95 (70%), Positives = 76/95 (80%)
Frame = +2 / +3
Query: 236 SILVTATNFCPPNYALPSDDGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRK 415
S +VTATNFCPPN+ SD GGWCNPPR HFD++ P+F IA YRAGIVPVSYRRV C+K
Sbjct: 102 STVVTATNFCPPNFGESSDAGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSYRRVACQK 281
Query: 416 SGGVRFTINGFRYFNLVLITNVAGAGDVVRASVKA 520
GG+RFTING YFNLVL+TNV G GDV SVK+
Sbjct: 282 KGGIRFTINGHSYFNLVLVTNVGGPGDVHAVSVKS 386
Score = 124 bits (265), Expect(2) = 1e-031
Identities = 60/94 (63%), Positives = 63/94 (67%)
Frame = -1 / -3
Query: 516 LTLARTTSPAPATFVISTRLKYRKPLIVNRTPPDLRHGTRR*ETGTMPARYSAMWRNMGM 337
LT TSP P T V STRLKY PLIVN PP H T R*ETGTMPAR SAM G
Sbjct: 382 LTDTACTSPGPPTLVTSTRLKYEWPLIVNLMPPFFWHATLR*ETGTMPAR*SAMRWKTGW 203
Query: 336 ARSKCGRGGLHQPPSSEGSA*LGGQKLVAVTRME 235
SK RGGLHQPP+S+ S LGGQKLVAVT +E
Sbjct: 202 DMSKWARGGLHQPPASDDSPKLGGQKLVAVTTVE 101
Score = 63.8 bits (133), Expect(3) = 6e-062
Identities = 24/32 (75%), Positives = 26/32 (81%)
Frame = +2 / +3
Query: 524 STGWLPMSRNWGQNWQSNAILVGQALSFRVTA 619
S W +SRNWGQNWQSNA+L GQ LSFRVTA
Sbjct: 393 SAAWQALSRNWGQNWQSNALLDGQGLSFRVTA 488
Score = 40.5 bits (82), Expect(3) = 6e-062
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +2 / +3
Query: 143 ALFDEGLRCGACFEIRCE 196
ALF+ GL CGACFE+RC+
Sbjct: 3 ALFNNGLSCGACFEVRCD 56
Score = 32.7 bits (65), Expect(2) = 1e-031
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1 / -3
Query: 618 AVTRKESAWPTRMALDCQFWPQFLDMGSH 532
AVTR E P+ AL CQF PQ + H
Sbjct: 487 AVTRNERPCPSSSALLCQFCPQLRESACH 401
>gb|CA023510.1|CA023510 HZ46H12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ46H12
5-PRIME, mRNA sequence
Length = 429
Score = 228 bits (493), Expect(2) = 2e-061
Identities = 87/114 (76%), Positives = 95/114 (83%)
Frame = +2 / +3
Query: 236 SILVTATNFCPPNYALPSDDGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRK 415
SI +TATN CPPNYALP+DDGGWCNPPR HFD+A P +L I YRAGIVPVSYRRVPC K
Sbjct: 87 SITITATNLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRRVPCVK 266
Query: 416 SGGVRFTINGFRYFNLVLITNVAGAGDVVRASVKAASTGWLPMSRNWGQNWQSN 577
GG+RFTING YFNLVL TNVAGAGDV S+K +S+GW MSRNWGQNWQSN
Sbjct: 267 KGGMRFTINGHSYFNLVLXTNVAGAGDVQSVSIKGSSSGWQAMSRNWGQNWQSN 428
Score = 155 bits (332), Expect = 5e-037
Identities = 72/111 (64%), Positives = 75/111 (67%)
Frame = -1 / -3
Query: 570 CQFWPQFLDMGSHPVLAALTLARTTSPAPATFVISTRLKYRKPLIVNRTPPDLRHGTRR* 391
CQFWPQ DM HP L L TSPAPAT V STRLK PL+VN PP GT R*
Sbjct: 421 CQFWPQLRDMACHPELDPLMETDCTSPAPATLVXSTRLK*EWPLMVNLXPPFFTQGTLR* 242
Query: 390 ETGTMPARYSAMWRNMGMARSKCGRGGLHQPPSSEGSA*LGGQKLVAVTRM 238
ETGTMPAR +WR G A SK RGGLHQPPSS GSA*LGGQ+LVAV M
Sbjct: 241 ETGTMPAR*IPIWR*AGSAMSKWARGGLHQPPSSLGSA*LGGQRLVAVMVM 89
Score = 108 bits (231), Expect(2) = 8e-025
Identities = 48/71 (67%), Positives = 50/71 (70%)
Frame = -3 / -2
Query: 577 VGLPVLAPVPGHGQPPGAGRLDARAHHVPRAGHVRDQHQVEVPEAVDCEPHPAGLAARHP 398
V LPVLAPV GHG PPGAG LD HV AGHV +HQVEV AVD EPH A L HP
Sbjct: 428 VALPVLAPVAGHGLPPGAGPLDGDGLHVAGAGHVGXKHQVEVGVAVDGEPHXALLHTGHP 249
Query: 397 AVGDGHDAGAV 365
VG+GHDAGAV
Sbjct: 248 PVGNGHDAGAV 216
Score = 28.1 bits (55), Expect(2) = 2e-061
Identities = 6/15 (40%), Positives = 13/15 (86%)
Frame = +2 / +3
Query: 152 DEGLRCGACFEIRCE 196
++G CG+C+E++C+
Sbjct: 21 NDGAACGSCYELKCQ 65
Score = 25.4 bits (49), Expect(2) = 8e-025
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1 / -2
Query: 267 GQKLVAVTRMEGLPGRHHRHPGCSSHLISKHAPQRSPSSNSAVLS 133
GQ++V ++ G G RH + L P R NSAVLS
Sbjct: 137 GQRVVGRAKVGGGDGDAARHARAALALELVARPARRAVVNSAVLS 3
>gb|BG368613.1|BG368613 HVSMEi0019P07f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0019P07f, mRNA sequence
Length = 619
Score = 231 bits (498), Expect = 7e-060
Identities = 93/132 (70%), Positives = 100/132 (75%)
Frame = +2 / +1
Query: 305 CNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRKSGGVRFTINGFRYFNLVLITNVA 484
CNPPRPHFD+A P FLHI +YRAGIVPVSYRRVPC K GG+RFTING YFNLVL+TNVA
Sbjct: 1 CNPPRPHFDMAEPAFLHIGQYRAGIVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVA 180
Query: 485 GAGDVVRASVKAASTGWLPMSRNWGQNWQSNAILVGQALSFRVTASDRRTSTSWNAAPST 664
GAGD S+K TGW MSRNWG NWQS L GQ LSFRVT+SD RT TS A P+
Sbjct: 181 GAGDARSVSIKGTRTGWQAMSRNWGMNWQSITFLDGQCLSFRVTSSDGRTVTSNAAGPAG 360
Query: 665 WQFGQTFEGKNF 700
WQF QTF G F
Sbjct: 361 WQFRQTF*GAQF 396
Score = 162 bits (348), Expect = 3e-039
Identities = 75/128 (58%), Positives = 78/128 (60%)
Frame = -1 / -3
Query: 690 PSKVWPNCQVLGAAFQEVEVRRSLAVTRKESAWPTRMALDCQFWPQFLDMGSHPVLAALT 511
P KVW NCQ G A V VR SL VT KE WP+R + CQF PQ DM PV L
Sbjct: 386 P*KVWRNCQPAGPAALLVTVRPSLEVTLKERHWPSRKVMLCQFMPQLRDMACQPVRVPLM 207
Query: 510 LARTTSPAPATFVISTRLKYRKPLIVNRTPPDLRHGTRR*ETGTMPARYSAMWRNMGMAR 331
SPAPAT V STRLK PL+VNR PP HGT *ETGTMPARY MWR G A
Sbjct: 206 DTERASPAPATLVTSTRLK*EWPLMVNRMPPFFTHGTLL*ETGTMPARYCPMWRKAGSAM 27
Query: 330 SKCGRGGL 307
SK GRGGL
Sbjct: 26 SKWGRGGL 3
Score = 102 bits (218), Expect = 3e-021
Identities = 48/80 (60%), Positives = 53/80 (66%)
Frame = -3 / -2
Query: 595 LADEDGVGLPVLAPVPGHGQPPGAGRLDARAHHVPRAGHVRDQHQVEVPEAVDCEPHPAG 416
LA ++G LPV APV GHG P GA LD V AGHV QHQVEV AVD EP
Sbjct: 291 LAVQEGDALPVHAPVAGHGLPAGARALDGHGARVAGAGHVGHQHQVEVGVAVDGEPDAPL 112
Query: 415 LAARHPAVGDGHDAGAVLGD 356
L ARHP+VG+G+DAGAVL D
Sbjct: 111 LHARHPSVGNGYDAGAVLPD 52
>gb|CA017256.1|CA017256 HV14F10u HV Hordeum vulgare subsp. vulgare cDNA clone HV14F10
3-PRIME, mRNA sequence
Length = 532
Score = 226 bits (489), Expect = 1e-058
Identities = 87/144 (60%), Positives = 109/144 (75%)
Frame = +2 / -3
Query: 254 TNFCPPNYALPSDDGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRKSGGVRF 433
TNFCPPN+ALPS++GGWCNPPR HFD++ P + IA Y+AGIVPV Y+RV C+K G+RF
Sbjct: 530 TNFCPPNWALPSNNGGWCNPPRLHFDMSQPAWTSIAIYQAGIVPVMYKRVSCQKRDGIRF 351
Query: 434 TINGFRYFNLVLITNVAGAGDVVRASVKAASTGWLPMSRNWGQNWQSNAILVGQALSFRV 613
I+G YF LV++TNV G+G VV+ +K ++T WL MSRNWG NWQSNA L GQ LSFRV
Sbjct: 350 GISGRDYFELVVVTNVGGSGVVVQMWIKGSNTNWLAMSRNWGANWQSNAYLNGQRLSFRV 171
Query: 614 TASDRRTSTSWNAAPSTWQFGQTF 685
D R +T+ + APS W FG T+
Sbjct: 170 RLDDGREATASDVAPSNWWFGATY 99
Score = 116 bits (248), Expect = 2e-025
Identities = 69/143 (48%), Positives = 75/143 (52%)
Frame = -1 / +1
Query: 681 VWPNCQVLGAAFQEVEVRRSLAVTRKESAWPTRMALDCQFWPQFLDMGSHPVLAALTLAR 502
V PN Q+ GA V R S ++T KES WP R AL CQF PQF M S VL L
Sbjct: 103 VAPNHQLDGATSLAVASRPSSSLTLKESLWPLR*ALLCQFAPQFRLMASQLVLEPLIHIC 282
Query: 501 TTSPAPATFVISTRLKYRKPLIVNRTPPDLRHGTRR*ETGTMPARYSAMWRNMGMARSKC 322
TT+P P T V +T K P + R P T TGTMPA AM G SK
Sbjct: 283 TTTPLPPTLVTTTSSK*SLPEMPKRMPSRFWQETLLYMTGTMPAW*MAMLVQAGCDMSKW 462
Query: 321 GRGGLHQPPSSEGSA*LGGQKLV 253
RGGLH PP GSA LGGQKLV
Sbjct: 463 RRGGLHHPPLLLGSAQLGGQKLV 531
>gb|BU989542.1|BU989542 HF22A11r HF Hordeum vulgare subsp. vulgare cDNA clone HF22A11
5-PRIME, mRNA sequence
Length = 620
Score = 218 bits (470), Expect(2) = 2e-057
Identities = 83/155 (53%), Positives = 107/155 (69%)
Frame = +2 / +3
Query: 236 SILVTATNFCPPNYALPSDDGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRK 415
SI+VTATNFCPPNY P+D GG CNPP HF L + F IA ++AG++P+ YRRV C +
Sbjct: 63 SIVVTATNFCPPNYGFPADAGGVCNPPNHHFLLPIQAFEKIALWKAGVMPIQYRRVKCLR 242
Query: 416 SGGVRFTINGFRYFNLVLITNVAGAGDVVRASVKAASTGWLPMSRNWGQNWQSNAILVGQ 595
GGVRF+++G +F VLI+NV GAGDV +K +GWL M RNWGQ W N L GQ
Sbjct: 243 EGGVRFSVSGKSFFFTVLISNVGGAGDVRSVKIKGTDSGWLDMGRNWGQIWHINLDLTGQ 422
Query: 596 ALSFRVTASDRRTSTSWNAAPSTWQFGQTFEGKNF 700
+SF +T+SD T T++N P W+FG+T+ GK F
Sbjct: 423 PVSFELTSSDGTTMTNFNVVPKDWEFGKTYTGKQF 527
Score = 142 bits (304), Expect = 4e-033
Identities = 74/153 (48%), Positives = 82/153 (53%)
Frame = -1 / -2
Query: 693 LPSKVWPNCQVLGAAFQEVEVRRSLAVTRKESAWPTRMALDCQFWPQFLDMGSHPVLAAL 514
LP V PN Q LG + V V SL V+ K++ P R L C WPQ M S P L
Sbjct: 520 LPVYVLPNSQSLGTTLKFVIVVPSLEVSSKDTGCPVRSKLMCHIWPQLRPMSSQPESVPL 341
Query: 513 TLARTTSPAPATFVISTRLKYRKPLIVNRTPPDLRHGTRR*ETGTMPARYSAMWRNMGMA 334
TSPAP T +I T K P NRTPP RH TRR G PA SA++ N M
Sbjct: 340 IFTDLTSPAPPTLLIRTVKKKLFPETENRTPPSRRHLTRRYWMGMTPAFQSAIFSNAWMG 161
Query: 333 RSKCGRGGLHQPPSSEGSA*LGGQKLVAVTRME 235
R K GGL PP+S G *LGGQKLVAVT ME
Sbjct: 160 RRKWWLGGLQTPPASAGKP*LGGQKLVAVTTME 62
Score = 25.4 bits (49), Expect(2) = 2e-057
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = +2 / +3
Query: 167 CGACFEIRCEE 199
CG C+E++C E
Sbjct: 3 CGGCYEVKCVE 35
>gb|BU990552.1|BU990552 HF25G07r HF Hordeum vulgare subsp. vulgare cDNA clone HF25G07
5-PRIME, mRNA sequence
Length = 565
Score = 218 bits (470), Expect(2) = 2e-057
Identities = 83/155 (53%), Positives = 107/155 (69%)
Frame = +2 / +3
Query: 236 SILVTATNFCPPNYALPSDDGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRK 415
SI+VTATNFCPPNY P+D GG CNPP HF L + F IA ++AG++P+ YRRV C +
Sbjct: 63 SIVVTATNFCPPNYGFPADAGGVCNPPNHHFLLPIQAFEKIALWKAGVMPIQYRRVKCLR 242
Query: 416 SGGVRFTINGFRYFNLVLITNVAGAGDVVRASVKAASTGWLPMSRNWGQNWQSNAILVGQ 595
GGVRF+++G +F VLI+NV GAGDV +K +GWL M RNWGQ W N L GQ
Sbjct: 243 EGGVRFSVSGKSFFFTVLISNVGGAGDVRSVKIKGTDSGWLDMGRNWGQIWHINLDLTGQ 422
Query: 596 ALSFRVTASDRRTSTSWNAAPSTWQFGQTFEGKNF 700
+SF +T+SD T T++N P W+FG+T+ GK F
Sbjct: 423 PVSFELTSSDGTTMTNFNVVPKDWEFGKTYTGKQF 527
Score = 142 bits (304), Expect = 4e-033
Identities = 74/153 (48%), Positives = 82/153 (53%)
Frame = -1 / -1
Query: 693 LPSKVWPNCQVLGAAFQEVEVRRSLAVTRKESAWPTRMALDCQFWPQFLDMGSHPVLAAL 514
LP V PN Q LG + V V SL V+ K++ P R L C WPQ M S P L
Sbjct: 520 LPVYVLPNSQSLGTTLKFVIVVPSLEVSSKDTGCPVRSKLMCHIWPQLRPMSSQPESVPL 341
Query: 513 TLARTTSPAPATFVISTRLKYRKPLIVNRTPPDLRHGTRR*ETGTMPARYSAMWRNMGMA 334
TSPAP T +I T K P NRTPP RH TRR G PA SA++ N M
Sbjct: 340 IFTDLTSPAPPTLLIRTVKKKLFPETENRTPPSRRHLTRRYWMGMTPAFQSAIFSNAWMG 161
Query: 333 RSKCGRGGLHQPPSSEGSA*LGGQKLVAVTRME 235
R K GGL PP+S G *LGGQKLVAVT ME
Sbjct: 160 RRKWWLGGLQTPPASAGKP*LGGQKLVAVTTME 62
Score = 25.4 bits (49), Expect(2) = 2e-057
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = +2 / +3
Query: 167 CGACFEIRCEE 199
CG C+E++C E
Sbjct: 3 CGGCYEVKCVE 35
>gb|BE215000.1|BE215000 HV_CEb0005H19f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0005H19f, mRNA sequence
Length = 904
Score = 147 bits (315), Expect(3) = 3e-057
Identities = 54/73 (73%), Positives = 60/73 (82%)
Frame = +2 / +2
Query: 236 SILVTATNFCPPNYALPSDDGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRK 415
SI +T TN CPPNYALP+DDGGWCNPPR HFD+A P +L I YRAGIVPVSYR+VPC K
Sbjct: 374 SITITGTNLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPVSYRKVPCVK 553
Query: 416 SGGVRFTINGFRY 454
GG+RFTING Y
Sbjct: 554 KGGMRFTINGHSY 592
Score = 98.2 bits (208), Expect(3) = 3e-030
Identities = 46/69 (66%), Positives = 49/69 (71%)
Frame = -1 / -2
Query: 444 PLIVNRTPPDLRHGTRR*ETGTMPARYSAMWRNMGMARSKCGRGGLHQPPSSEGSA*LGG 265
PL+VN PP GT R*ETGTMPAR +WR G A SK RGGLHQPPSS GSA*LGG
Sbjct: 582 PLMVNLIPPFFTQGTFR*ETGTMPAR*IPIWR*AGSAMSKWARGGLHQPPSSLGSA*LGG 403
Query: 264 QKLVAVTRM 238
Q+LV V M
Sbjct: 402 QRLVPVMVM 376
Score = 57.0 bits (118), Expect(3) = 3e-057
Identities = 19/31 (61%), Positives = 26/31 (83%)
Frame = +2 / +2
Query: 104 SQGYGVNNAALSTALFDEGLRCGACFEIRCE 196
S GYG N AALSTALF++G CG+C+E++C+
Sbjct: 260 STGYGTNTAALSTALFNDGAACGSCYELKCQ 352
Score = 57.0 bits (118), Expect(3) = 3e-057
Identities = 22/28 (78%), Positives = 22/28 (78%)
Frame = +1 / +2
Query: 28 AHATFYGGSDAFGFMGGACGYGNL*QPG 111
AHATFYGG DA G MGGACGYGNL G
Sbjct: 185 AHATFYGGGDASGTMGGACGYGNLYSTG 268
Score = 43.7 bits (89), Expect(3) = 3e-030
Identities = 21/39 (53%), Positives = 24/39 (61%)
Frame = -1 / -2
Query: 192 HLISKHAPQRSPSSNSAVLSAALFTPYPWLSQVAVPAGP 76
HL S H P +PS NSAVLSAA+F P P L + P P
Sbjct: 348 HLSS*HDPHAAPSLNSAVLSAAVFVP*PVLYRFP*PHAP 232
Score = 28.1 bits (55), Expect(3) = 3e-030
Identities = 15/23 (65%), Positives = 15/23 (65%)
Frame = -1 / -1
Query: 99 QVAVPAGPAHKAKSVAAAVERGV 31
QV V A AH A VAAAVE GV
Sbjct: 256 QVPVAARAAHCAGRVAAAVEGGV 188
>gb|BI957392.1|BI957392 HVSMEn0009F06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009F06f, mRNA sequence
Length = 665
Score = 148 bits (318), Expect(3) = 3e-056
Identities = 55/74 (74%), Positives = 61/74 (82%)
Frame = +2 / +2
Query: 236 SILVTATNFCPPNYALPSDDGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRK 415
SI +TATN CPPNYALP+DDGGWCNPPR HF +A P +L I YRAGIVPVSYRRVPC K
Sbjct: 212 SITITATNLCPPNYALPNDDGGWCNPPRAHFXMAEPAYLQIGIYRAGIVPVSYRRVPCVK 391
Query: 416 SGGVRFTINGFRYF 457
GG+RFT+NG YF
Sbjct: 392 KGGMRFTMNGHAYF 433
Score = 101 bits (215), Expect(3) = 1e-030
Identities = 49/75 (65%), Positives = 51/75 (68%)
Frame = -1 / -3
Query: 462 RLKYRKPLIVNRTPPDLRHGTRR*ETGTMPARYSAMWRNMGMARSKCGRGGLHQPPSSEG 283
RLK P IVN PP GT R*ETGTMPAR +WR G A K RGGLHQPPSS G
Sbjct: 438 RLK*AWPFIVNLIPPFFTQGTLR*ETGTMPAR*IPIWR*AGSAMXKWARGGLHQPPSSLG 259
Query: 282 SA*LGGQKLVAVTRM 238
SA*LGGQ+LVAV M
Sbjct: 258 SA*LGGQRLVAVMVM 214
Score = 57.0 bits (118), Expect(3) = 3e-056
Identities = 22/28 (78%), Positives = 22/28 (78%)
Frame = +1 / +2
Query: 28 AHATFYGGSDAFGFMGGACGYGNL*QPG 111
AHATFYGG DA G MGGACGYGNL G
Sbjct: 23 AHATFYGGGDASGTMGGACGYGNLYSTG 106
Score = 52.4 bits (108), Expect(3) = 3e-056
Identities = 18/31 (58%), Positives = 24/31 (77%)
Frame = +2 / +2
Query: 104 SQGYGVNNAALSTALFDEGLRCGACFEIRCE 196
S GYG N AALSTALF++G CG C+ ++C+
Sbjct: 98 STGYGTNTAALSTALFNDGAACGWCYXLKCQ 190
Score = 41.8 bits (85), Expect(3) = 1e-030
Identities = 20/39 (51%), Positives = 23/39 (58%)
Frame = -1 / -3
Query: 192 HLISKHAPQRSPSSNSAVLSAALFTPYPWLSQVAVPAGP 76
HL H P +PS NSAVLSAA+F P P L + P P
Sbjct: 186 HLSX*HHPHAAPSLNSAVLSAAVFVP*PVLYRFP*PHAP 70
Score = 28.1 bits (55), Expect(3) = 1e-030
Identities = 15/23 (65%), Positives = 15/23 (65%)
Frame = -1 / -2
Query: 99 QVAVPAGPAHKAKSVAAAVERGV 31
QV V A AH A VAAAVE GV
Sbjct: 94 QVPVAARAAHCAGRVAAAVEGGV 26
>gb|AV917412.1|AV917412 AV917412 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18m24 5', mRNA sequence
Length = 626
Score = 218 bits (471), Expect = 4e-056
Identities = 89/123 (72%), Positives = 96/123 (78%)
Frame = +2 / +2
Query: 332 LAMPMFLHIAEYRAGIVPVSYRRVPCRKSGGVRFTINGFRYFNLVLITNVAGAGDVVRAS 511
+A P FLHIA+YRAGIVPVSYRRVPC K GG+RFTING YFNLVL+TNVAGAGD S
Sbjct: 2 MAEPAFLHIAQYRAGIVPVSYRRVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDARSVS 181
Query: 512 VKAASTGWLPMSRNWGQNWQSNAILVGQALSFRVTASDRRTSTSWNAAPSTWQFGQTFEG 691
+K TGW MSRNWG NWQSN L GQ LSFRVT+SD RT TS AAP+ WQFGQTFEG
Sbjct: 182 IKGTRTGWQAMSRNWGMNWQSNTFLDGQCLSFRVTSSDGRTVTSNAAAPAGWQFGQTFEG 361
Query: 692 KNF 700
F
Sbjct: 362 AQF 370
Score = 160 bits (344), Expect = 1e-038
Identities = 73/119 (61%), Positives = 75/119 (63%)
Frame = -1 / -3
Query: 690 PSKVWPNCQVLGAAFQEVEVRRSLAVTRKESAWPTRMALDCQFWPQFLDMGSHPVLAALT 511
PSKVWPNCQ GAA V VR SL VT KE WP+R L CQF PQ DM PV L
Sbjct: 360 PSKVWPNCQPAGAAALLVTVRPSLEVTLKERHWPSRKVLLCQFMPQLRDMACQPVRVPLM 181
Query: 510 LARTTSPAPATFVISTRLKYRKPLIVNRTPPDLRHGTRR*ETGTMPARYSAMWRNMGMA 334
SPAPAT V STRLK PL+VNR PP HGT *ETGTMPARY AMWR G A
Sbjct: 180 DTERASPAPATLVTSTRLK*EWPLMVNRMPPFFTHGTLL*ETGTMPARYCAMWRKAGSA 4
Score = 108 bits (230), Expect = 6e-023
Identities = 50/80 (62%), Positives = 54/80 (67%)
Frame = -3 / -2
Query: 595 LADEDGVGLPVLAPVPGHGQPPGAGRLDARAHHVPRAGHVRDQHQVEVPEAVDCEPHPAG 416
LA ++GV LPV APV GHG P GA LD V AGHV QHQVEV AVD EP
Sbjct: 265 LAVQEGVALPVHAPVAGHGLPAGARALDGHGARVAGAGHVGHQHQVEVGVAVDGEPDAPL 86
Query: 415 LAARHPAVGDGHDAGAVLGD 356
L ARHP+VGDG+DAGAVL D
Sbjct: 85 LHARHPSVGDGYDAGAVLRD 26
>gb|BU989257.1|BU989257 HF21D19r HF Hordeum vulgare subsp. vulgare cDNA clone HF21D19
5-PRIME, mRNA sequence
Length = 522
Score = 215 bits (464), Expect = 3e-055
Identities = 82/153 (53%), Positives = 106/153 (69%)
Frame = +2 / +3
Query: 236 SILVTATNFCPPNYALPSDDGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRK 415
SI+VTATNFCPPNY P+D GG CNPP HF L + F IA ++AG++P+ YRRV C +
Sbjct: 63 SIVVTATNFCPPNYGFPADAGGVCNPPNHHFLLPIQAFEKIALWKAGVMPIQYRRVKCLR 242
Query: 416 SGGVRFTINGFRYFNLVLITNVAGAGDVVRASVKAASTGWLPMSRNWGQNWQSNAILVGQ 595
GGVRF+++G +F VLI+NV GAGDV +K +GWL M RNWGQ W N L GQ
Sbjct: 243 EGGVRFSVSGKSFFFTVLISNVGGAGDVRSVKIKGTDSGWLDMGRNWGQIWHINLDLTGQ 422
Query: 596 ALSFRVTASDRRTSTSWNAAPSTWQFGQTFEGK 694
+SF +T+SD T T++N P W+FG+T+ GK
Sbjct: 423 PVSFELTSSDGTTMTNFNVVPKDWEFGKTYTGK 521
Score = 142 bits (304), Expect = 4e-033
Identities = 74/153 (48%), Positives = 82/153 (53%)
Frame = -1 / -3
Query: 693 LPSKVWPNCQVLGAAFQEVEVRRSLAVTRKESAWPTRMALDCQFWPQFLDMGSHPVLAAL 514
LP V PN Q LG + V V SL V+ K++ P R L C WPQ M S P L
Sbjct: 520 LPVYVLPNSQSLGTTLKFVIVVPSLEVSSKDTGCPVRSKLMCHIWPQLRPMSSQPESVPL 341
Query: 513 TLARTTSPAPATFVISTRLKYRKPLIVNRTPPDLRHGTRR*ETGTMPARYSAMWRNMGMA 334
TSPAP T +I T K P NRTPP RH TRR G PA SA++ N M
Sbjct: 340 IFTDLTSPAPPTLLIRTVKKKLFPETENRTPPSRRHLTRRYWMGMTPAFQSAIFSNAWMG 161
Query: 333 RSKCGRGGLHQPPSSEGSA*LGGQKLVAVTRME 235
R K GGL PP+S G *LGGQKLVAVT ME
Sbjct: 160 RRKWWLGGLQTPPASAGKP*LGGQKLVAVTTME 62
>gb|AL503556.1|AL503556 AL503556 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02J12T 5', mRNA sequence
Length = 700
Score = 96.8 bits (205), Expect(5) = 8e-055
Identities = 39/52 (75%), Positives = 43/52 (82%)
Frame = +2 / +3
Query: 368 RAGIVPVSYRRVPCRKSGGVRFTINGFRYFNLVLITNVAGAGDVVRASVKAA 523
RAGIVPVSYRRVPC K GG+RFTING YFNLVL+TNVAGAGDV +K +
Sbjct: 384 RAGIVPVSYRRVPCVKKGGMRFTINGHSYFNLVLVTNVAGAGDVQSVXIKGS 539
Score = 76.7 bits (161), Expect(4) = 4e-029
Identities = 34/55 (61%), Positives = 36/55 (65%)
Frame = -3 / -3
Query: 532 PGAGRLDARAHHVPRAGHVRDQHQVEVPEAVDCEPHPAGLAARHPAVGDGHDAGA 368
P G LD HV AGHV +HQVEV AVD EPHPA L HP VG+GHDAGA
Sbjct: 548 PELGPLDXDGLHVAGAGHVGHKHQVEVGVAVDGEPHPALLHTGHPPVGNGHDAGA 384
Score = 67.5 bits (141), Expect(5) = 9e-023
Identities = 31/44 (70%), Positives = 32/44 (72%)
Frame = -1 / -1
Query: 498 TSPAPATFVISTRLKYRKPLIVNRTPPDLRHGTRR*ETGTMPAR 367
TSPAPAT V STRLK PL+VN PP GT R*ETGTMPAR
Sbjct: 514 TSPAPATLVTSTRLK*EWPLMVNLIPPFFTQGTLR*ETGTMPAR 383
Score = 57.0 bits (118), Expect(5) = 8e-055
Identities = 19/31 (61%), Positives = 26/31 (83%)
Frame = +2 / +1
Query: 104 SQGYGVNNAALSTALFDEGLRCGACFEIRCE 196
S GYG N AALSTALF++G CG+C+E++C+
Sbjct: 136 STGYGTNTAALSTALFNDGAACGSCYELKCQ 228
Score = 57.0 bits (118), Expect(5) = 8e-055
Identities = 22/28 (78%), Positives = 22/28 (78%)
Frame = +1 / +1
Query: 28 AHATFYGGSDAFGFMGGACGYGNL*QPG 111
AHATFYGG DA G MGGACGYGNL G
Sbjct: 61 AHATFYGGGDASGTMGGACGYGNLYSTG 144
Score = 52.4 bits (108), Expect(5) = 8e-055
Identities = 18/36 (50%), Positives = 21/36 (58%)
Frame = +2 / +2
Query: 260 FCPPNYALPSDDGGWCNPPRPHFDLAMPMFLHIAEY 367
F P P+ GWCNPPR HFD+A P +L I Y
Sbjct: 275 FARPTTRCPTTTSGWCNPPRAHFDMAEPAYLQIGIY 382
Score = 46.0 bits (94), Expect(4) = 9e-022
Identities = 16/20 (80%), Positives = 18/20 (90%)
Frame = +2 / +1
Query: 236 SILVTATNFCPPNYALPSDD 295
SI +TATN CPPNYALP+DD
Sbjct: 250 SITITATNLCPPNYALPNDD 309
Score = 44.6 bits (91), Expect(4) = 9e-022
Identities = 21/40 (52%), Positives = 22/40 (55%)
Frame = +3 / +1
Query: 399 GCRAASPAGCGSQSTASGTSTWC*SRTWPARGTWCARASR 518
GC AG GS STA+ TSTWC TWPA T SR
Sbjct: 415 GCPV*RRAG*GSPSTATPTSTWCL*PTWPAPATCSPSXSR 534
Score = 43.7 bits (89), Expect(4) = 4e-029
Identities = 21/39 (53%), Positives = 24/39 (61%)
Frame = -1 / -3
Query: 192 HLISKHAPQRSPSSNSAVLSAALFTPYPWLSQVAVPAGP 76
HL S H P +PS NSAVLSAA+F P P L + P P
Sbjct: 224 HLSS*HDPHAAPSLNSAVLSAAVFVP*PVLYRFP*PHAP 108
Score = 37.7 bits (76), Expect(5) = 9e-023
Identities = 17/28 (60%), Positives = 18/28 (64%)
Frame = -2 / -3
Query: 110 PGCHRLPYPQAPPIKPKASLPP*NVACA 27
P +R P P APPI P AS PP* VA A
Sbjct: 143 PVLYRFP*PHAPPIVPDASPPP*KVAWA 60
Score = 35.0 bits (70), Expect(4) = 4e-029
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = -1 / -2
Query: 357 MWRNMGMARSKCGRGGLHQPPSSEGSA*LGGQKL 256
+WR G A SK RGGLHQP G +G K+
Sbjct: 372 IWR*AGSAMSKWARGGLHQPLVVVGQRVVGRAKV 271
Score = 34.1 bits (68), Expect(4) = 9e-022
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +3 / +3
Query: 27 RARHVLRRQRRFWLYGRGLRVRQPV 101
R RH+LRR+RR GR +R+R+PV
Sbjct: 60 RPRHLLRRRRRVRHNGRRVRLREPV 134
Score = 33.6 bits (67), Expect(4) = 9e-022
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1 / +3
Query: 103 QPGVRREQRGAEHGAVRRGAPLRRVL 180
Q G+R E GAEHGAV+R +R VL
Sbjct: 135 QHGLRHEHGGAEHGAVQRRRGVRVVL 212
Score = 30.4 bits (60), Expect(5) = 9e-023
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = -1 / -3
Query: 294 SSEGSA*LGGQKLVAVTRM 238
SS GSA*LGGQ+LVAV M
Sbjct: 308 SSLGSA*LGGQRLVAVMVM 252
Score = 28.1 bits (55), Expect(4) = 4e-029
Identities = 15/23 (65%), Positives = 15/23 (65%)
Frame = -1 / -2
Query: 99 QVAVPAGPAHKAKSVAAAVERGV 31
QV V A AH A VAAAVE GV
Sbjct: 132 QVPVAARAAHCAGRVAAAVEGGV 64
Score = 25.8 bits (50), Expect(5) = 8e-055
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +2 / +3
Query: 539 PMSRNWGQNWQSN 577
P S GQNWQSN
Sbjct: 558 PCSATGGQNWQSN 596
Score = 25.8 bits (50), Expect(5) = 9e-023
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -2 / -1
Query: 140 CSAPRCSRRTPGC 102
CSAP CS R P C
Sbjct: 172 CSAPPCSCRNPCC 134
Score = 21.7 bits (41), Expect(5) = 9e-023
Identities = 6/11 (54%), Positives = 7/11 (63%)
Frame = -1 / -1
Query: 570 CQFWPQFLDMG 538
CQFWP + G
Sbjct: 589 CQFWPPVAEHG 557
>gb|CA025602.1|CA025602 HZ52K01r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ52K01
5-PRIME, mRNA sequence
Length = 418
Score = 162 bits (349), Expect(2) = 1e-053
Identities = 62/88 (70%), Positives = 70/88 (79%)
Frame = +2 / +2
Query: 257 NFCPPNYALPSDDGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRKSGGVRFT 436
NFCPPN+ SD GGWCNPPR HFD++ P+F IA YRAGIVPVSYRRV C+K GG+RFT
Sbjct: 17 NFCPPNFGESSDAGGWCNPPRAHFDMSQPVFQRIALYRAGIVPVSYRRVACQKKGGIRFT 196
Query: 437 INGFRYFNLVLITNVAGAGDVVRASVKA 520
ING YFNLVL+TNV G GDV SVK+
Sbjct: 197 INGHSYFNLVLVTNVGGPGDVHAVSVKS 280
Score = 114 bits (243), Expect(2) = 1e-028
Identities = 55/87 (63%), Positives = 57/87 (65%)
Frame = -1 / -2
Query: 516 LTLARTTSPAPATFVISTRLKYRKPLIVNRTPPDLRHGTRR*ETGTMPARYSAMWRNMGM 337
LT TSP P T V STRLKY PLIVN PP H T R*ETGTMPAR SAM G
Sbjct: 276 LTDTACTSPGPPTLVTSTRLKYEWPLIVNLMPPFFWHATLR*ETGTMPAR*SAMRWKTGW 97
Query: 336 ARSKCGRGGLHQPPSSEGSA*LGGQKL 256
SK RGGLHQPP+S+ S LGGQKL
Sbjct: 96 DMSKWARGGLHQPPASDDSPKLGGQKL 16
Score = 68.0 bits (142), Expect(2) = 1e-053
Identities = 27/43 (62%), Positives = 32/43 (74%)
Frame = +2 / +2
Query: 524 STGWLPMSRNWGQNWQSNAILVGQALSFRVTASDRRTSTSWNA 652
S W +SRNWGQNWQSNA+L GQ LSFRVTA + ++ S NA
Sbjct: 287 SAAWQALSRNWGQNWQSNALLDGQGLSFRVTAGNGQSVVSNNA 415
Score = 32.7 bits (65), Expect(2) = 1e-028
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1 / -2
Query: 618 AVTRKESAWPTRMALDCQFWPQFLDMGSH 532
AVTR E P+ AL CQF PQ + H
Sbjct: 381 AVTRNERPCPSSSALLCQFCPQLRESACH 295
>gb|BF065271.3|BF065271 HV_CEb0024O07f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0024O07f, mRNA sequence
Length = 823
Score = 82.6 bits (174), Expect(5) = 6e-053
Identities = 30/43 (69%), Positives = 33/43 (76%)
Frame = +2 / +1
Query: 260 FCPPNYALPSDDGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPV 388
F P YALP+D GGWCNPPR HFD+A P +L I YRAGIVPV
Sbjct: 403 FARPTYALPNDHGGWCNPPRAHFDMAEPAYLQIGIYRAGIVPV 531
Score = 68.4 bits (143), Expect(5) = 6e-053
Identities = 28/39 (71%), Positives = 31/39 (79%)
Frame = +2 / +2
Query: 383 PVSYRRVPCRKSGGVRFTINGFRYFNLVLITNVAGAGDV 499
P SYRR PC K GG+RFTING YFNL L TNVAGAG++
Sbjct: 527 PFSYRRGPCVKKGGMRFTINGHSYFNLGLETNVAGAGNM 643
Score = 62.0 bits (129), Expect(4) = 7e-026
Identities = 28/45 (62%), Positives = 32/45 (71%)
Frame = -1 / -3
Query: 390 ETGTMPARYSAMWRNMGMARSKCGRGGLHQPPSSEGSA*LGGQKL 256
+TGTMPAR +WR G A SK RGGLHQPP S GSA*+G K+
Sbjct: 533 KTGTMPAR*IPIWR*AGSAMSKWARGGLHQPPWSLGSA*VGRAKV 399
Score = 54.2 bits (112), Expect(5) = 6e-053
Identities = 18/31 (58%), Positives = 25/31 (80%)
Frame = +2 / +3
Query: 104 SQGYGVNNAALSTALFDEGLRCGACFEIRCE 196
S GYG N AALSTALF++ CG+C+E++C+
Sbjct: 264 STGYGTNTAALSTALFNDSAACGSCYELKCQ 356
Score = 49.2 bits (101), Expect(5) = 6e-053
Identities = 20/28 (71%), Positives = 20/28 (71%)
Frame = +1 / +3
Query: 28 AHATFYGGSDAFGFMGGACGYGNL*QPG 111
AHATFYGG DA G MGGAC Y NL G
Sbjct: 189 AHATFYGGGDASGTMGGACCYRNLYSTG 272
Score = 43.7 bits (89), Expect(4) = 7e-026
Identities = 23/43 (53%), Positives = 25/43 (58%)
Frame = -3 / -1
Query: 517 LDARAHHVPRAGHVRDQHQVEVPEAVDCEPHPAGLAARHPAVG 389
L R HV AGHV + QV+V AVD EPHPA L P VG
Sbjct: 661 LRKRDWHVAGAGHVGLKPQVKVGVAVDGEPHPAFLHTGPPPVG 533
Score = 36.8 bits (74), Expect(4) = 7e-026
Identities = 18/30 (60%), Positives = 20/30 (66%)
Frame = -1 / -1
Query: 192 HLISKHAPQRSPSSNSAVLSAALFTPYPWL 103
HL S H P + S NSAVLSAA+F P P L
Sbjct: 352 HLSS*HDPHAALSLNSAVLSAAVFVP*PVL 263
Score = 29.9 bits (59), Expect(4) = 7e-026
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = -2 / -1
Query: 110 PGCHRLPYPQAPPIKPKASLPP*NVACA 27
P +R APPI P AS PP* VA A
Sbjct: 271 PVLYRFR*QHAPPIVPDASPPP*KVAWA 188
Score = 28.1 bits (55), Expect(5) = 6e-053
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2 / +3
Query: 236 SILVTATNFCPPN 274
SI +T TN CPPN
Sbjct: 378 SITITVTNLCPPN 416
>gb|BF256452.2|BF256452 HVSMEf0010A02f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0010A02f, mRNA sequence
Length = 839
Score = 179 bits (385), Expect(2) = 8e-053
Identities = 72/136 (52%), Positives = 91/136 (66%)
Frame = +2 / +1
Query: 236 SILVTATNFCPPNYALPSDDGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRK 415
SI+VTATNFCPPNY P+D GG CNPP HF L + F IA ++AG++P+ YRRV C +
Sbjct: 181 SIVVTATNFCPPNYGFPADAGGVCNPPNHHFLLPIQAFEKIALWKAGVMPIQYRRVKCLR 360
Query: 416 SGGVRFTINGFRYFNLVLITNVAGAGDVVRASVKAASTGWLPMSRNWGQNWQSNAILVGQ 595
GGVRF+++G +F VLI+NV GAGDV +K +GWL M RNWGQ W L GQ
Sbjct: 361 EGGVRFSVSGKSFFFTVLISNVGGAGDVRSRKIKGTDSGWLYMGRNWGQIWVIIFDLTGQ 540
Query: 596 ALSFRVTASDRRTSTS 643
+SF +T D T T+
Sbjct: 541 PVSFGLTLGDGATKTN 588
Score = 116 bits (249), Expect(2) = 2e-032
Identities = 63/135 (46%), Positives = 71/135 (52%)
Frame = -1 / -1
Query: 639 VEVRRSLAVTRKESAWPTRMALDCQFWPQFLDMGSHPVLAALTLARTTSPAPATFVISTR 460
V V S V+ K++ P R + WPQ M S P L TSPAP T +I T
Sbjct: 584 VFVAPSPKVSPKDTGCPVRSKIMTHIWPQLRPM*SQPESVPLIFLDLTSPAPPTLLIRTV 405
Query: 459 LKYRKPLIVNRTPPDLRHGTRR*ETGTMPARYSAMWRNMGMARSKCGRGGLHQPPSSEGS 280
K P NRTPP RH TRR G PA SA++ N M R K GGL PP+S G
Sbjct: 404 KKKLFPETENRTPPSRRHLTRRYWMGMTPAFQSAIFSNAWMGRRKWWLGGLQTPPASAGK 225
Query: 279 A*LGGQKLVAVTRME 235
*LGGQKLVAVT ME
Sbjct: 224 P*LGGQKLVAVTTME 180
Score = 48.7 bits (100), Expect(2) = 8e-053
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +2 / +1
Query: 110 GYGVNNAALSTALFDEGLRCGACFEIRCEE 199
GYG+ LSTALF+ G CG C+E++C E
Sbjct: 64 GYGMATVGLSTALFERGAACGGCYEVKCVE 153
Score = 42.8 bits (87), Expect(2) = 2e-032
Identities = 21/50 (42%), Positives = 26/50 (52%)
Frame = -1 / -1
Query: 198 SSHLISKHAPQRSPSSNSAVLSAALFTPYPWLSQVAVPAGPAHKAKSVAA 49
S+HL S PQ +P SNSAVLS + PYP + P P + AA
Sbjct: 152 STHLTS*QPPQAAPRSNSAVLSPTVAIPYPCFPRSPNPHAPPMASPGSAA 3
>gb|BF619242.3|BF619242 HVSMEc0015J01f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0015J01f, mRNA sequence
Length = 563
Score = 129 bits (277), Expect(3) = 2e-052
Identities = 47/57 (82%), Positives = 51/57 (89%)
Frame = +2 / +3
Query: 236 SILVTATNFCPPNYALPSDDGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVP 406
SI+VTATNFCPPNY LPSDDGGWCNPPRPHFD+A P FLHIA+YRAGIVP YR+ P
Sbjct: 387 SIMVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPCFYRKGP 557
Score = 85.4 bits (180), Expect(3) = 7e-026
Identities = 39/53 (73%), Positives = 41/53 (77%)
Frame = -1 / -2
Query: 393 *ETGTMPARYSAMWRNMGMARSKCGRGGLHQPPSSEGSA*LGGQKLVAVTRME 235
*+ GTMPARY AM R G A SK GRGGLH PPSS GS *LGGQKLVAVT M+
Sbjct: 544 *KQGTMPARYCAM*RKAGSAMSKWGRGGLHHPPSSLGSP*LGGQKLVAVTMMD 386
Score = 58.3 bits (121), Expect(3) = 2e-052
Identities = 20/31 (64%), Positives = 26/31 (83%)
Frame = +2 / +3
Query: 104 SQGYGVNNAALSTALFDEGLRCGACFEIRCE 196
S GYG N AALSTALF++G CG+C+E+RC+
Sbjct: 267 STGYGTNTAALSTALFNDGAACGSCYELRCD 359
Score = 57.0 bits (118), Expect(3) = 2e-052
Identities = 22/28 (78%), Positives = 22/28 (78%)
Frame = +1 / +3
Query: 28 AHATFYGGSDAFGFMGGACGYGNL*QPG 111
AHATFYGG DA G MGGACGYGNL G
Sbjct: 192 AHATFYGGGDASGTMGGACGYGNLYSTG 275
Score = 45.5 bits (93), Expect(3) = 7e-026
Identities = 19/28 (67%), Positives = 21/28 (75%)
Frame = -2 / -2
Query: 110 PGCHRLPYPQAPPIKPKASLPP*NVACA 27
P +RLPYP APPI P+AS PP* VA A
Sbjct: 274 PVLYRLPYPHAPPIVPEASPPP*KVAWA 191
Score = 24.4 bits (47), Expect(3) = 7e-026
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -2 / -3
Query: 140 CSAPRCSRRTPGC 102
CSAP CS RT C
Sbjct: 303 CSAPPCSCRTQCC 265
>gb|CA022537.1|CA022537 HZ43I17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ43I17
5-PRIME, mRNA sequence
Length = 522
Score = 126 bits (270), Expect(3) = 2e-051
Identities = 46/52 (88%), Positives = 49/52 (94%)
Frame = +2 / +3
Query: 236 SILVTATNFCPPNYALPSDDGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVS 391
SI+VTATNFCPPNY LPSDDGGWCNPPRPHFD+A P FLHIA+YRAGIVPVS
Sbjct: 366 SIMVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVS 521
Score = 96.4 bits (204), Expect(3) = 4e-029
Identities = 41/52 (78%), Positives = 42/52 (80%)
Frame = -1 / -3
Query: 390 ETGTMPARYSAMWRNMGMARSKCGRGGLHQPPSSEGSA*LGGQKLVAVTRME 235
ETGTMPARY AMWR G A SK GRGGLHQPPSS G *LGGQKLVAVT M+
Sbjct: 520 ETGTMPARYCAMWRKAGSAMSKWGRGGLHQPPSSLGRP*LGGQKLVAVTMMD 365
Score = 58.3 bits (121), Expect(3) = 2e-051
Identities = 20/31 (64%), Positives = 26/31 (83%)
Frame = +2 / +3
Query: 104 SQGYGVNNAALSTALFDEGLRCGACFEIRCE 196
S GYG N AALSTALF++G CG+C+E+RC+
Sbjct: 246 STGYGTNTAALSTALFNDGAACGSCYELRCD 338
Score = 57.0 bits (118), Expect(3) = 2e-051
Identities = 22/28 (78%), Positives = 22/28 (78%)
Frame = +1 / +3
Query: 28 AHATFYGGSDAFGFMGGACGYGNL*QPG 111
AHATFYGG DA G MGGACGYGNL G
Sbjct: 171 AHATFYGGGDASGTMGGACGYGNLYSTG 254
Score = 45.5 bits (93), Expect(3) = 4e-029
Identities = 19/28 (67%), Positives = 21/28 (75%)
Frame = -2 / -3
Query: 110 PGCHRLPYPQAPPIKPKASLPP*NVACA 27
P +RLPYP APPI P+AS PP* VA A
Sbjct: 253 PVLYRLPYPHAPPIVPEASPPP*KVAWA 170
Score = 24.4 bits (47), Expect(3) = 4e-029
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -2 / -1
Query: 140 CSAPRCSRRTPGC 102
CSAP CS RT C
Sbjct: 282 CSAPPCSCRTQCC 244
>gb|BQ461074.1|BQ461074 HE01E19r HE Hordeum vulgare subsp. vulgare cDNA clone HE01E19
5-PRIME, mRNA sequence
Length = 397
Score = 169 bits (364), Expect(2) = 1e-050
Identities = 65/104 (62%), Positives = 80/104 (76%)
Frame = +2 / +2
Query: 374 GIVPVSYRRVPCRKSGGVRFTINGFRYFNLVLITNVAGAGDVVRASVKAASTGWLPMSRN 553
GIVPV Y+RVPC K GGVRFT+NG YF LVL++NV G + S+K + TGW+PMSRN
Sbjct: 86 GIVPVLYQRVPCAKKGGVRFTVNGHDYFELVLVSNVGSVGSIRSVSIKGSRTGWMPMSRN 265
Query: 554 WGQNWQSNAILVGQALSFRVTASDRRTSTSWNAAPSTWQFGQTF 685
WG NWQSNA+L GQ+LSF+VT++D +T T N AP+ W FGQTF
Sbjct: 266 WGVNWQSNALLSGQSLSFQVTSTDGQTITFPNVAPAGWGFGQTF 397
Score = 97.7 bits (207), Expect(2) = 8e-025
Identities = 51/104 (49%), Positives = 54/104 (51%)
Frame = -1 / -2
Query: 684 KVWPNCQVLGAAFQEVEVRRSLAVTRKESAWPTRMALDCQFWPQFLDMGSHPVLAALTLA 505
KVWP GA +V V S+ VT E P ALDCQ PQFLDMG HPV L
Sbjct: 396 KVWPKPHPAGATLGKVIVWPSVLVTWNERLCPLSSALDCQLTPQFLDMGIHPVRDPLMDT 217
Query: 504 RTTSPAPATFVISTRLKYRKPLIVNRTPPDLRHGTRR*ETGTMP 373
P T + ST K PL VN TPP L GTR * TGTMP
Sbjct: 216 DRMEPTLPTLLTSTSSK*SWPLTVNLTPPFLAQGTRW*RTGTMP 85
Score = 51.0 bits (105), Expect(2) = 1e-050
Identities = 17/22 (77%), Positives = 20/22 (90%)
Frame = +2 / +2
Query: 236 SILVTATNFCPPNYALPSDDGG 301
S+ +TATN CPPNYALP+DDGG
Sbjct: 23 SVTITATNLCPPNYALPNDDGG 88
Score = 36.3 bits (73), Expect(2) = 8e-025
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = -1 / -2
Query: 300 PPSSEGSA*LGGQKLVAV 247
PPSS GSA*LGGQ+LVAV
Sbjct: 87 PPSSLGSA*LGGQRLVAV 34
>gb|BI777322.2|BI777322 EBro03_SQ002_N24_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ002_N24 5', mRNA sequence
Length = 370
Score = 197 bits (425), Expect = 8e-050
Identities = 71/111 (63%), Positives = 88/111 (79%)
Frame = +2 / +1
Query: 236 SILVTATNFCPPNYALPSDDGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRK 415
SI V+ATNFCPPN+ LPSD+GGWCNPPR HFD++ P + +I YRAGI+PV Y++V C +
Sbjct: 34 SITVSATNFCPPNWDLPSDNGGWCNPPRHHFDMSQPAWENIGIYRAGIIPVFYQQVKCWR 213
Query: 416 SGGVRFTINGFRYFNLVLITNVAGAGDVVRASVKAASTGWLPMSRNWGQNW 568
GGVRFTINGF YF LVL+ N+AG+G + SVK +T W+PMSRNWG NW
Sbjct: 214 QGGVRFTINGFNYFELVLVANIAGSGSIKSMSVKGTNTAWIPMSRNWGANW 366
Score = 119 bits (255), Expect = 2e-026
Identities = 60/112 (53%), Positives = 67/112 (59%)
Frame = -1 / -3
Query: 570 CQFWPQFLDMGSHPVLAALTLARTTSPAPATFVISTRLKYRKPLIVNRTPPDLRHGTRR* 391
CQ PQFLD+G H VL T P PA +T K KPL+VNRTPP L+H T *
Sbjct: 368 CQLAPQFLDIGIHAVLVPFTDMLLIDPLPAMLATNTSSK*LKPLMVNRTPPCLQHLTCW* 189
Query: 390 ETGTMPARYSAMWRNMGMARSKCGRGGLHQPPSSEGSA*LGGQKLVAVTRME 235
+TG MPAR M+ G SK RGGLH PP S G + LGGQKLVA T ME
Sbjct: 188 KTGMMPAR*MPMFSQAGCDMSKW*RGGLHHPPLSLGRSQLGGQKLVAETVME 33
>gb|CA017681.1|CA017681 HV05O14r HV Hordeum vulgare subsp. vulgare cDNA clone HV05O14
5-PRIME, mRNA sequence
Length = 443
Score = 124 bits (265), Expect(3) = 2e-047
Identities = 44/70 (62%), Positives = 56/70 (80%)
Frame = +2 / +2
Query: 236 SILVTATNFCPPNYALPSDDGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRK 415
++ +TATN CP +Y+ P+D+GGWCNPPR H D+A P + I YRAGIVPV ++RVPC +
Sbjct: 227 TVTITATNLCPTDYSKPNDNGGWCNPPRKHLDMAQPAWERIGIYRAGIVPVLFQRVPCSR 406
Query: 416 SGGVRFTING 445
SGGVRFTING
Sbjct: 407 SGGVRFTING 436
Score = 85.8 bits (181), Expect(3) = 2e-027
Identities = 41/66 (62%), Positives = 45/66 (68%)
Frame = -1 / -3
Query: 444 PLIVNRTPPDLRHGTRR*ETGTMPARYSAMWRNMGMARSKCGRGGLHQPPSSEGSA*LGG 265
PL+VNRTPP L GTR TGTMPAR M + G A S+C RGGLHQPP S G * G
Sbjct: 435 PLMVNRTPPLLEQGTRWNRTGTMPAR*MPMRSHAGCAMSRCLRGGLHQPPLSLGLE*SVG 256
Query: 264 QKLVAV 247
Q+LVAV
Sbjct: 255 QRLVAV 238
Score = 52.4 bits (108), Expect(3) = 2e-047
Identities = 20/25 (80%), Positives = 21/25 (84%)
Frame = +1 / +2
Query: 25 RAHATFYGGSDAFGFMGGACGYGNL 99
R ATFYGGS+A G MGGACGYGNL
Sbjct: 23 RGSATFYGGSNAAGTMGGACGYGNL 97
Score = 51.9 bits (107), Expect(3) = 2e-047
Identities = 16/29 (55%), Positives = 24/29 (82%)
Frame = +2 / +2
Query: 110 GYGVNNAALSTALFDEGLRCGACFEIRCE 196
GYG N AALST+LF++G CG C++++C+
Sbjct: 107 GYGTNTAALSTSLFNDGAACGECYQVQCD 193
Score = 48.3 bits (99), Expect(3) = 2e-027
Identities = 19/26 (73%), Positives = 21/26 (80%)
Frame = -2 / -3
Query: 110 PGCHRLPYPQAPPIKPKASLPP*NVA 33
P +RLPYPQAPP+ P A LPP*NVA
Sbjct: 108 PVAYRLPYPQAPPMVPAALLPP*NVA 31
Score = 26.3 bits (51), Expect(3) = 2e-027
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -2 / -1
Query: 140 CSAPRCSRRTP 108
CSAP CS RTP
Sbjct: 137 CSAPPCSSRTP 105
>gb|BI779583.2|BI779583 EBro01_SQ004_H20_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ004_H20 5', mRNA sequence
Length = 592
Score = 116 bits (248), Expect(3) = 5e-046
Identities = 43/68 (63%), Positives = 53/68 (77%)
Frame = +2 / +1
Query: 239 ILVTATNFCPPNYALPSDDGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRKS 418
I V+ATNFCPPN+ALP GGWCNPPR HFD++ P + IA Y+AGIVPV Y+RV C+K
Sbjct: 367 ITVSATNFCPPNWALPRTTGGWCNPPRLHFDMSQPAWTSIAIYQAGIVPVMYKRVSCQKR 546
Query: 419 GGVRFTIN 442
G+RF I+
Sbjct: 547 DGIRFGIS 570
Score = 56.5 bits (117), Expect(3) = 5e-046
Identities = 20/29 (68%), Positives = 25/29 (86%)
Frame = +2 / +1
Query: 110 GYGVNNAALSTALFDEGLRCGACFEIRCE 196
GYG+NNAALSTALF++G CGAC+ I C+
Sbjct: 244 GYGINNAALSTALFNDGAMCGACYIIYCD 330
Score = 50.6 bits (104), Expect(3) = 5e-046
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = +1 / +1
Query: 28 AHATFYGGSDAFGFMGGACGYGNL 99
A ATFYGG+D G MGGACGYGNL
Sbjct: 163 ATATFYGGADGSGTMGGACGYGNL 234
>gb|BF257120.2|BF257120 HVSMEf0011O18f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0011O18f, mRNA sequence
Length = 539
Score = 99.1 bits (210), Expect(4) = 6e-046
Identities = 36/50 (72%), Positives = 40/50 (80%)
Frame = +2 / +1
Query: 236 SILVTATNFCPPNYALPSDDGGWCNPPRPHFDLAMPMFLHIAEYRAGIVP 385
SI +TATN CP NYAL +DDGGWCNPPR HFD+A P +L I YRAGIVP
Sbjct: 355 SITITATNLCPANYALANDDGGWCNPPRAHFDMAKPAYLQIGIYRAGIVP 504
Score = 71.2 bits (149), Expect(3) = 3e-022
Identities = 33/49 (67%), Positives = 35/49 (71%)
Frame = -1 / -1
Query: 384 GTMPARYSAMWRNMGMARSKCGRGGLHQPPSSEGSA*LGGQKLVAVTRM 238
GTMPAR +WR G A SK RGGLHQPPSS SA*L GQ+LVAV M
Sbjct: 503 GTMPAR*IPIWR*AGFAMSKWARGGLHQPPSSLASA*LAGQRLVAVMVM 357
Score = 57.0 bits (118), Expect(4) = 6e-046
Identities = 19/31 (61%), Positives = 26/31 (83%)
Frame = +2 / +1
Query: 104 SQGYGVNNAALSTALFDEGLRCGACFEIRCE 196
S GYG N AALSTALF++G CG+C+E++C+
Sbjct: 241 STGYGTNTAALSTALFNDGAACGSCYELKCQ 333
Score = 57.0 bits (118), Expect(4) = 6e-046
Identities = 22/28 (78%), Positives = 22/28 (78%)
Frame = +1 / +1
Query: 28 AHATFYGGSDAFGFMGGACGYGNL*QPG 111
AHATFYGG DA G MGGACGYGNL G
Sbjct: 166 AHATFYGGGDASGTMGGACGYGNLYSTG 249
Score = 43.7 bits (89), Expect(3) = 3e-022
Identities = 21/39 (53%), Positives = 24/39 (61%)
Frame = -1 / -1
Query: 192 HLISKHAPQRSPSSNSAVLSAALFTPYPWLSQVAVPAGP 76
HL S H P +PS NSAVLSAA+F P P L + P P
Sbjct: 329 HLSS*HDPHAAPSLNSAVLSAAVFVP*PVLYRFP*PHAP 213
Score = 28.1 bits (55), Expect(4) = 6e-046
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +2 / +2
Query: 383 PVSYRRVPCRKS 418
PVSYRRVPC K+
Sbjct: 503 PVSYRRVPCVKN 538
Score = 28.1 bits (55), Expect(3) = 3e-022
Identities = 15/23 (65%), Positives = 15/23 (65%)
Frame = -1 / -3
Query: 99 QVAVPAGPAHKAKSVAAAVERGV 31
QV V A AH A VAAAVE GV
Sbjct: 237 QVPVAARAAHCAGRVAAAVEGGV 169
>gb|BQ762357.1|BQ762357 EBro01_SQ005_H18_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ005_H18 5', mRNA sequence
Length = 535
Score = 182 bits (392), Expect = 3e-045
Identities = 75/103 (72%), Positives = 82/103 (79%)
Frame = +2 / +1
Query: 392 YRRVPCRKSGGVRFTINGFRYFNLVLITNVAGAGDVVRASVKAASTGWLPMSRNWGQNWQ 571
Y RVPC K GG+RFTING YFNLVL+TNVAGAGDV S+K +S+GW MSRNWGQNWQ
Sbjct: 7 YCRVPCVKKGGMRFTINGHSYFNLVLVTNVAGAGDVQSVSIKGSSSGWQAMSRNWGQNWQ 186
Query: 572 SNAILVGQALSFRVTASDRRTSTSWNAAPSTWQFGQTFEGKNF 700
SNA L GQ+LSFRVT SD RT TS NAAP+ W FGQTFEG F
Sbjct: 187 SNADLDGQSLSFRVTLSDGRTVTSNNAAPAGWSFGQTFEGGQF 315
Score = 120 bits (256), Expect = 2e-026
Identities = 57/97 (58%), Positives = 59/97 (60%)
Frame = -1 / -3
Query: 690 PSKVWPNCQVLGAAFQEVEVRRSLAVTRKESAWPTRMALDCQFWPQFLDMGSHPVLAALT 511
PSKV P Q GAA V VR SL VTRKE WP+R AL CQFWPQ DM HP L L
Sbjct: 305 PSKVCPKDQPAGAALLLVTVRPSLRVTRKERLWPSRSALLCQFWPQLRDMACHPELDPLM 126
Query: 510 LARTTSPAPATFVISTRLKYRKPLIVNRTPPDLRHGT 400
TSPAPAT V STRLK PL+VN PP GT
Sbjct: 125 ETDCTSPAPATLVTSTRLK*EWPLMVNLIPPFFTQGT 15
>gb|BQ663324.1|BQ663324 HU02C09u HU Hordeum vulgare subsp. vulgare cDNA clone HU02C09
3-PRIME, mRNA sequence
Length = 492
Score = 99.1 bits (210), Expect(3) = 6e-043
Identities = 35/47 (74%), Positives = 39/47 (82%)
Frame = +2 / +1
Query: 236 SILVTATNFCPPNYALPSDDGGWCNPPRPHFDLAMPMFLHIAEYRAG 376
SI +TATN CPPNYALP+DDGGWCNPPR HFD+A P +L I YRAG
Sbjct: 352 SITITATNLCPPNYALPNDDGGWCNPPRAHFDMAEPAYLQIGIYRAG 492
Score = 68.9 bits (144), Expect(3) = 1e-021
Identities = 32/46 (69%), Positives = 34/46 (73%)
Frame = -1 / -2
Query: 375 PARYSAMWRNMGMARSKCGRGGLHQPPSSEGSA*LGGQKLVAVTRM 238
PAR +WR G A SK RGGLHQPPSS GSA*LGGQ+LVAV M
Sbjct: 491 PAR*IPIWR*AGSAMSKWARGGLHQPPSSLGSA*LGGQRLVAVMVM 354
Score = 57.0 bits (118), Expect(3) = 6e-043
Identities = 19/31 (61%), Positives = 26/31 (83%)
Frame = +2 / +1
Query: 104 SQGYGVNNAALSTALFDEGLRCGACFEIRCE 196
S GYG N AALSTALF++G CG+C+E++C+
Sbjct: 238 STGYGTNTAALSTALFNDGAACGSCYELKCQ 330
Score = 57.0 bits (118), Expect(3) = 6e-043
Identities = 22/28 (78%), Positives = 22/28 (78%)
Frame = +1 / +1
Query: 28 AHATFYGGSDAFGFMGGACGYGNL*QPG 111
AHATFYGG DA G MGGACGYGNL G
Sbjct: 163 AHATFYGGGDASGTMGGACGYGNLYSTG 246
Score = 43.7 bits (89), Expect(3) = 1e-021
Identities = 21/39 (53%), Positives = 24/39 (61%)
Frame = -1 / -2
Query: 192 HLISKHAPQRSPSSNSAVLSAALFTPYPWLSQVAVPAGP 76
HL S H P +PS NSAVLSAA+F P P L + P P
Sbjct: 326 HLSS*HDPHAAPSLNSAVLSAAVFVP*PVLYRFP*PHAP 210
Score = 28.1 bits (55), Expect(3) = 1e-021
Identities = 15/23 (65%), Positives = 15/23 (65%)
Frame = -1 / -1
Query: 99 QVAVPAGPAHKAKSVAAAVERGV 31
QV V A AH A VAAAVE GV
Sbjct: 234 QVPVAARAAHCAGRVAAAVEGGV 166
>gb|AV913816.1|AV913816 AV913816 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23g08 5', mRNA sequence
Length = 657
Score = 100 bits (214), Expect(2) = 1e-042
Identities = 42/58 (72%), Positives = 46/58 (79%)
Frame = +2 / +2
Query: 347 FLHIAEYRAGIVPVSYRRVPCRKSGGVRFTINGFRYFNLVLITNVAGAGDVVRASVKA 520
F IA YRAGIVPVSYRRV C+K GG+RFTING YFNLVL+TNV G GDV SVK+
Sbjct: 2 FQRIALYRAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGPGDVHAVSVKS 175
Score = 92.7 bits (196), Expect(2) = 1e-042
Identities = 36/59 (61%), Positives = 41/59 (69%)
Frame = +2 / +2
Query: 524 STGWLPMSRNWGQNWQSNAILVGQALSFRVTASDRRTSTSWNAAPSTWQFGQTFEGKNF 700
S W +SRNWGQNWQSNA+L GQ LSFRVTA + ++ S NA P W FGQTF G F
Sbjct: 182 SAAWQALSRNWGQNWQSNALLDGQGLSFRVTAGNGQSVVSNNAVPRGWSFGQTFSGAQF 358
Score = 75.8 bits (159), Expect(2) = 6e-022
Identities = 36/57 (63%), Positives = 38/57 (66%)
Frame = -3 / -3
Query: 526 AGRLDARAHHVPRAGHVRDQHQVEVPEAVDCEPHPAGLAARHPAVGDGHDAGAVLGD 356
A RLD HV A HV DQHQVEV A+D EP A L ARHPAVGDG +AGAV D
Sbjct: 181 ARRLDGHRVHVAGATHVGDQHQVEVRVAIDREPDAALLLARHPAVGDGDNAGAVERD 11
Score = 48.7 bits (100), Expect(2) = 6e-022
Identities = 24/53 (45%), Positives = 26/53 (49%)
Frame = -1 / -1
Query: 690 PSKVWPNCQVLGAAFQEVEVRRSLAVTRKESAWPTRMALDCQFWPQFLDMGSH 532
P KVWPN Q G A E AVTR E P+ AL CQF PQ + H
Sbjct: 348 PLKVWPNDQPRGTALLETTDWPLPAVTRNERPCPSSSALLCQFCPQLRESACH 190
>gb|BJ464959.1|BJ464959 BJ464959 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags36l22 5', mRNA sequence
Length = 639
Score = 100 bits (214), Expect(2) = 1e-042
Identities = 42/58 (72%), Positives = 46/58 (79%)
Frame = +2 / +2
Query: 347 FLHIAEYRAGIVPVSYRRVPCRKSGGVRFTINGFRYFNLVLITNVAGAGDVVRASVKA 520
F IA YRAGIVPVSYRRV C+K GG+RFTING YFNLVL+TNV G GDV SVK+
Sbjct: 2 FQRIALYRAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGPGDVHAVSVKS 175
Score = 92.7 bits (196), Expect(2) = 1e-042
Identities = 36/59 (61%), Positives = 41/59 (69%)
Frame = +2 / +2
Query: 524 STGWLPMSRNWGQNWQSNAILVGQALSFRVTASDRRTSTSWNAAPSTWQFGQTFEGKNF 700
S W +SRNWGQNWQSNA+L GQ LSFRVTA + ++ S NA P W FGQTF G F
Sbjct: 182 SAAWQALSRNWGQNWQSNALLDGQGLSFRVTAGNGQSVVSNNAVPRGWSFGQTFSGAQF 358
Score = 75.8 bits (159), Expect(2) = 6e-022
Identities = 36/57 (63%), Positives = 38/57 (66%)
Frame = -3 / -3
Query: 526 AGRLDARAHHVPRAGHVRDQHQVEVPEAVDCEPHPAGLAARHPAVGDGHDAGAVLGD 356
A RLD HV A HV DQHQVEV A+D EP A L ARHPAVGDG +AGAV D
Sbjct: 181 ARRLDGHRVHVAGATHVGDQHQVEVRVAIDREPDAALLLARHPAVGDGDNAGAVERD 11
Score = 48.7 bits (100), Expect(2) = 6e-022
Identities = 24/53 (45%), Positives = 26/53 (49%)
Frame = -1 / -1
Query: 690 PSKVWPNCQVLGAAFQEVEVRRSLAVTRKESAWPTRMALDCQFWPQFLDMGSH 532
P KVWPN Q G A E AVTR E P+ AL CQF PQ + H
Sbjct: 348 PLKVWPNDQPRGTALLETTDWPLPAVTRNERPCPSSSALLCQFCPQLRESACH 190
>gb|BI953531.1|BI953531 HVSMEm0013B19f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0013B19f, mRNA sequence
Length = 626
Score = 134 bits (287), Expect(2) = 4e-040
Identities = 49/55 (89%), Positives = 52/55 (94%)
Frame = +2 / +3
Query: 236 SILVTATNFCPPNYALPSDDGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRR 400
SI+VTATNFCPPNY LPSDDGGWCNPPRPHFD+A P FLHIA+YRAGIVPVSYRR
Sbjct: 111 SIMVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSYRR 275
Score = 96.8 bits (205), Expect(2) = 4e-024
Identities = 42/53 (79%), Positives = 43/53 (81%)
Frame = -1 / -2
Query: 393 *ETGTMPARYSAMWRNMGMARSKCGRGGLHQPPSSEGSA*LGGQKLVAVTRME 235
*ETGTMPARY AMWR G A SK GRGGLHQPPSS G *LGGQKLVAVT M+
Sbjct: 268 *ETGTMPARYCAMWRKAGSAMSKWGRGGLHQPPSSLGRP*LGGQKLVAVTMMD 110
Score = 51.0 bits (105), Expect(2) = 4e-040
Identities = 17/27 (62%), Positives = 23/27 (85%)
Frame = +2 / +3
Query: 116 GVNNAALSTALFDEGLRCGACFEIRCE 196
G N AALSTALF++G CG+C+E+RC+
Sbjct: 3 GTNTAALSTALFNDGAACGSCYELRCD 83
Score = 35.0 bits (70), Expect(2) = 4e-024
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -1 / -2
Query: 177 HAPQRSPSSNSAVLSAALFTP 115
H P +PS NSAVLSAA+F P
Sbjct: 64 HDPHAAPSLNSAVLSAAVFVP 2
>gb|AV922591.1|AV922591 AV922591 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18m24 3', mRNA sequence
Length = 701
Score = 165 bits (354), Expect = 5e-040
Identities = 67/96 (69%), Positives = 72/96 (75%)
Frame = +2 / -3
Query: 413 KSGGVRFTINGFRYFNLVLITNVAGAGDVVRASVKAASTGWLPMSRNWGQNWQSNAILVG 592
K GG+RFTING YFNLVL+TNVAGAGD S+K TGW MSRNWG NWQSN L G
Sbjct: 699 KKGGIRFTINGHSYFNLVLVTNVAGAGDARSVSIKGTRTGWQAMSRNWGMNWQSNTFLDG 520
Query: 593 QALSFRVTASDRRTSTSWNAAPSTWQFGQTFEGKNF 700
Q LSFRVT+SD RT TS AAP+ WQFGQTFEG F
Sbjct: 519 QCLSFRVTSSDGRTVTSNAAAPAGWQFGQTFEGAQF 412
Score = 117 bits (251), Expect = 8e-026
Identities = 54/91 (59%), Positives = 56/91 (61%)
Frame = -1 / +2
Query: 690 PSKVWPNCQVLGAAFQEVEVRRSLAVTRKESAWPTRMALDCQFWPQFLDMGSHPVLAALT 511
PSKVWPNCQ GAA V VR SL VT KE WP+R L CQF PQ DM PV L
Sbjct: 422 PSKVWPNCQPAGAAALLVTVRPSLEVTLKERHWPSRKVLLCQFMPQLRDMACQPVRVPLM 601
Query: 510 LARTTSPAPATFVISTRLKYRKPLIVNRTPP 418
SPAPAT V STRLK PL+VNR PP
Sbjct: 602 DTERASPAPATLVTSTRLK*EWPLMVNRMPP 694
>gb|CK124288.1|CK124288 BES1824108e08 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010E088 5-PRIME, mRNA sequence
Length = 542
Score = 129 bits (276), Expect(2) = 1e-039
Identities = 50/82 (60%), Positives = 59/82 (71%)
Frame = +2 / +2
Query: 287 SDDGGWCNPPRPHFDLAMPMFLHIAEYRAGIVPVSYRRVPCRKSGGVRFTINGFRYFNLV 466
SD GGWCNPPRPHFD+A P + I YR GI+P+ Y+RVPC K GGVRFTI+G YF LV
Sbjct: 2 SDKGGWCNPPRPHFDMAQPAWEKIGVYRGGIIPIIYQRVPCVKKGGVRFTISGHDYFQLV 181
Query: 467 LITNVAGAGDVVRASVKAASTG 532
L TNVA AG V V+ + +G
Sbjct: 182 LPTNVAAAGSVRAMDVRGSKSG 247
Score = 81.7 bits (172), Expect(2) = 2e-021
Identities = 42/81 (51%), Positives = 46/81 (56%)
Frame = -1 / -3
Query: 531 PVLAALTLARTTSPAPATFVISTRLKYRKPLIVNRTPPDLRHGTRR*ETGTMPARYSAMW 352
P L LT T PA AT V ST K PL+VN TPP HGT * G MP R + ++
Sbjct: 246 PDLEPLTSMALTEPAAATLVGSTSWK*SWPLMVNLTPPFFTHGTLW*MMGMMPPR*TPIF 67
Query: 351 RNMGMARSKCGRGGLHQPPSS 289
G A SK GRGGLHQPP S
Sbjct: 66 SQAGCAMSKWGRGGLHQPPLS 4
Score = 54.7 bits (113), Expect(2) = 1e-039
Identities = 22/45 (48%), Positives = 27/45 (60%)
Frame = +2 / +2
Query: 524 STGWLPMSRNWGQNWQSNAILVGQALSFRVTASDRRTSTSWNAAP 658
S W+ M+ NWG NW S A L GQ LSFRVT +D +T + P
Sbjct: 242 SGDWMAMAHNWGANWHSLAYLNGQGLSFRVTITDGQTLVFSDVVP 376
Score = 40.9 bits (83), Expect(2) = 2e-021
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = -1 / -3
Query: 657 GAAFQEVEVRRSLAVTRKESAWPTRMALDCQFWPQFLDM 541
G ++ V S+ VT KES WP R A +CQF PQ M
Sbjct: 375 GTTSEKTSVWPSVMVTLKESPWPLR*ARECQFAPQLCAM 259
>gb|AV916436.1|AV916436 AV916436 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17d09 5', mRNA sequence
Length = 536
Score = 160 bits (344), Expect = 1e-038
Identities = 65/93 (69%), Positives = 70/93 (75%)
Frame = +2 / +2
Query: 398 RVPCRKSGGVRFTINGFRYFNLVLITNVAGAGDVVRASVKAASTGWLPMSRNWGQNWQSN 577
RVPC K GG+RFTING YFNLVL+TNVAGAGD S+K TGW MSRNWG NWQSN
Sbjct: 257 RVPCVKKGGIRFTINGHSYFNLVLVTNVAGAGDARSVSIKGTRTGWQAMSRNWGMNWQSN 436
Query: 578 AILVGQALSFRVTASDRRTSTSWNAAPSTWQFG 676
L GQ LSFRVT+SD RT TS AAP+ WQFG
Sbjct: 437 TFLDGQCLSFRVTSSDGRTVTSNAAAPAGWQFG 535
Score = 110 bits (235), Expect = 1e-023
Identities = 52/92 (56%), Positives = 54/92 (58%)
Frame = -1 / -3
Query: 675 PNCQVLGAAFQEVEVRRSLAVTRKESAWPTRMALDCQFWPQFLDMGSHPVLAALTLARTT 496
PNCQ GAA V VR SL VT KE WP+R L CQF PQ DM PV L
Sbjct: 534 PNCQPAGAAALLVTVRPSLEVTLKERHWPSRKVLLCQFMPQLRDMACQPVRVPLMDTERA 355
Query: 495 SPAPATFVISTRLKYRKPLIVNRTPPDLRHGT 400
SPAPAT V STRLK PL+VNR PP HGT
Sbjct: 354 SPAPATLVTSTRLK*EWPLMVNRMPPFFTHGT 259
>gb|CA009609.1|CA009609 HU14J18r HU Hordeum vulgare subsp. vulgare cDNA clone HU14J18
5-PRIME, mRNA sequence
Length = 465
Score = 83.5 bits (176), Expect(3) = 3e-038
Identities = 28/34 (82%), Positives = 31/34 (91%)
Frame = +2 / +3
Query: 236 SILVTATNFCPPNYALPSDDGGWCNPPRPHFDLA 337
SI +TATN CPPNYALP+DDGGWCNPPR HFD+A
Sbjct: 363 SITITATNLCPPNYALPNDDGGWCNPPRAHFDMA 464
Score = 57.0 bits (118), Expect(3) = 3e-038
Identities = 19/31 (61%), Positives = 26/31 (83%)
Frame = +2 / +3
Query: 104 SQGYGVNNAALSTALFDEGLRCGACFEIRCE 196
S GYG N AALSTALF++G CG+C+E++C+
Sbjct: 249 STGYGTNTAALSTALFNDGAACGSCYELKCQ 341
Score = 57.0 bits (118), Expect(3) = 3e-038
Identities = 22/28 (78%), Positives = 22/28 (78%)
Frame = +1 / +3
Query: 28 AHATFYGGSDAFGFMGGACGYGNL*QPG 111
AHATFYGG DA G MGGACGYGNL G
Sbjct: 174 AHATFYGGGDASGTMGGACGYGNLYSTG 257
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 443,077,350
Number of Sequences: 312970
Number of extensions: 7726480
Number of successful extensions: 103480
Number of sequences better than 1.0e-020: 92
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 12420603005
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)