TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3012915.2.2
(621 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV917139.1|AV917139 AV917139 K. Sato unpublished cDNA li... 176 1e-085
gb|CK122346.1|CK122346 BES1824102p12 BES1824 Hordeum vulgar... 172 5e-081
gb|CK123980.1|CK123980 BES1824106f16 BES1824 Hordeum vulgar... 176 2e-079
gb|BF254126.2|BF254126 HVSMEf0003B13f Hordeum vulgare seedl... 176 5e-075
gb|BE060246.3|BE060246 HVSMEg0011L08f Hordeum vulgare pre-a... 172 8e-074
gb|BQ759881.1|BQ759881 EBpi05_SQ004_P16_R pistil, 8 DPA, no... 269 9e-072
gb|CK122737.1|CK122737 BES1824105j22 BES1824 Hordeum vulgar... 180 8e-068
gb|BQ465138.1|BQ465138 HU02M06r HU Hordeum vulgare subsp. v... 176 2e-067
gb|BQ459628.1|BQ459628 HA08J01r HA Hordeum vulgare subsp. v... 124 2e-062
gb|BE454367.2|BE454367 HVSMEh0093N18f Hordeum vulgare 5-45 ... 172 3e-061
gb|BF622288.3|BF622288 HVSMEa0002I16f Hordeum vulgare seedl... 144 1e-060
gb|BF260026.3|BF260026 HVSMEf0020O13f Hordeum vulgare seedl... 231 3e-060
gb|BF253787.2|BF253787 HVSMEf0002C01f Hordeum vulgare seedl... 174 3e-059
gb|CA017263.1|CA017263 HV14A15u HV Hordeum vulgare subsp. v... 131 4e-058
gb|BI956772.1|BI956772 HVSMEn0005E06f Hordeum vulgare rachi... 204 3e-057
gb|CV058074.1|CV058074 BNEL34a7 Barley EST endosperm librar... 144 2e-055
gb|CK124171.1|CK124171 BES1824107e17 BES1824 Hordeum vulgar... 124 4e-055
gb|BI959138.1|BI959138 HVSMEn0018F10f Hordeum vulgare rachi... 161 4e-055
gb|CA019997.1|CA019997 HV14A15r HV Hordeum vulgare subsp. v... 176 5e-054
gb|AV928430.1|AV928430 AV928430 K. Sato unpublished cDNA li... 209 1e-053
gb|BM101447.2|BM101447 EBpi01_SQ003_O01_R pistil, 1 DPA, no... 131 1e-052
gb|BF628930.2|BF628930 HVSMEb0009C23f Hordeum vulgare seedl... 187 1e-051
gb|BM097618.2|BM097618 EBem04_SQ002_D15_R embryo, 12 DPA, n... 143 4e-050
gb|CV055940.1|CV055940 BNEL12B5 Barley EST endosperm librar... 122 6e-050
gb|BI950777.1|BI950777 HVSMEl0023C15f Hordeum vulgare spike... 182 1e-048
gb|BU980984.1|BU980984 HA22E18r HA Hordeum vulgare subsp. v... 118 3e-046
gb|BM098205.2|BM098205 EBpi03_SQ002_N14_R pistil, 4 DPA, no... 118 3e-046
gb|CV054003.1|CV054003 BNEL105f8 Barley EST endosperm libra... 149 5e-046
gb|BF256653.2|BF256653 HVSMEf0010J19f Hordeum vulgare seedl... 158 7e-046
gb|CV063217.1|CV063217 BNEL87h3 Barley EST endosperm librar... 146 4e-045
gb|AV917082.1|AV917082 AV917082 K. Sato unpublished cDNA li... 176 5e-045
gb|CB880652.1|CB880652 HM07E17w HM Hordeum vulgare subsp. v... 180 7e-045
gb|CB881234.1|CB881234 HM09C23w HM Hordeum vulgare subsp. v... 180 7e-045
gb|BE196421.3|BE196421 HVSMEh0092D24f Hordeum vulgare 5-45 ... 88 4e-044
gb|BJ463021.1|BJ463021 BJ463021 K. Sato unpublished cDNA li... 165 2e-043
gb|BQ459308.1|BQ459308 HA01I15r HA Hordeum vulgare subsp. v... 109 4e-043
gb|CV063939.1|CV063939 BNEL94h5 Barley EST endosperm librar... 149 1e-041
gb|BU981055.1|BU981055 HA22I03r HA Hordeum vulgare subsp. v... 149 1e-041
gb|BU967134.1|BU967134 HB03G05r BC Hordeum vulgare subsp. v... 149 1e-041
gb|BQ458429.1|BQ458429 HA05E07r HA Hordeum vulgare subsp. v... 147 6e-041
gb|BI957603.1|BI957603 HVSMEn0010F11f Hordeum vulgare rachi... 149 9e-041
gb|BI958784.1|BI958784 HVSMEn0016J13f Hordeum vulgare rachi... 148 2e-040
gb|CB881182.1|CB881182 HM09A07w HM Hordeum vulgare subsp. v... 120 4e-040
gb|CK125696.1|CK125696 BES1824110b08 BES1824 Hordeum vulgar... 80 6e-040
gb|CV060611.1|CV060611 BNEL5B4 Barley EST endosperm library... 143 1e-039
gb|BI960458.1|BI960458 HVSMEn0024K16f Hordeum vulgare rachi... 144 4e-039
gb|BQ467895.1|BQ467895 HR01E04r HR Hordeum vulgare subsp. v... 160 6e-039
gb|BF257093.3|BF257093 HVSMEf0011N11f Hordeum vulgare seedl... 144 1e-038
gb|BU986289.1|BU986289 HF11E17r HF Hordeum vulgare subsp. v... 159 1e-038
gb|BG416780.1|BG416780 HVSMEk0014H23f Hordeum vulgare testa... 124 2e-038
gb|CV060955.1|CV060955 BNEL63c5 Barley EST endosperm librar... 121 3e-038
gb|BQ470849.1|BQ470849 HX04D14r HX Hordeum vulgare subsp. v... 95 5e-038
gb|BU990646.1|BU990646 HF25K12r HF Hordeum vulgare subsp. v... 118 1e-037
gb|BI960089.1|BI960089 HVSMEn0023C15f Hordeum vulgare rachi... 132 2e-037
gb|BG369116.2|BG369116 HVSMEi0021M10f Hordeum vulgare 20 DA... 106 6e-037
gb|BF259343.2|BF259343 HVSMEf0019F11f Hordeum vulgare seedl... 101 6e-037
gb|BI959353.1|BI959353 HVSMEn0019F12f Hordeum vulgare rachi... 92 1e-036
gb|CA031744.1|CA031744 HX11A03r HX Hordeum vulgare subsp. v... 126 2e-036
gb|CA019924.1|CA019924 HV13L18r HV Hordeum vulgare subsp. v... 144 1e-035
gb|BU995090.1|BU995090 HM09C23r HM Hordeum vulgare subsp. v... 131 2e-035
gb|BI958420.1|BI958420 HVSMEn0014O10f Hordeum vulgare rachi... 113 6e-035
gb|BU980194.1|BU980194 HA18P06r HA Hordeum vulgare subsp. v... 121 9e-035
gb|BI959698.1|BI959698 HVSMEn0020N13f Hordeum vulgare rachi... 125 1e-033
gb|BM372935.2|BM372935 EBma04_SQ002_H04_R maternal, 10 DPA,... 119 1e-033
gb|BU984183.1|BU984183 HF03D17r HF Hordeum vulgare subsp. v... 138 3e-032
gb|CB883447.1|CB883447 HQ02E17w HQ Hordeum vulgare subsp. v... 117 3e-032
gb|BI956858.1|BI956858 HVSMEn0005K24f Hordeum vulgare rachi... 71 4e-032
gb|BG369408.2|BG369408 HVSMEi0024E17f Hordeum vulgare 20 DA... 92 1e-031
gb|BM097179.2|BM097179 EBpi07_SQ002_K14_R pistil, 12 DPA, n... 135 2e-031
gb|BG368109.2|BG368109 HVSMEi0015L12f Hordeum vulgare 20 DA... 118 2e-031
gb|CB881625.1|CB881625 HM10G06w HM Hordeum vulgare subsp. v... 91 2e-031
gb|BG368652.1|BG368652 HVSMEi0020B24f Hordeum vulgare 20 DA... 116 5e-031
gb|BM442635.2|BM442635 EBan01_SQ003_L19_R anther, yellow st... 81 7e-031
gb|BI959654.1|BI959654 HVSMEn0020K03f Hordeum vulgare rachi... 116 8e-031
gb|BI959720.1|BI959720 HVSMEn0020P05f Hordeum vulgare rachi... 116 8e-031
gb|BJ453165.1|BJ453165 BJ453165 K. Sato unpublished cDNA li... 133 9e-031
gb|BI957582.1|BI957582 HVSMEn0010D14f Hordeum vulgare rachi... 109 1e-030
gb|AJ461923.1|AJ461923 AJ461923 S00002 Hordeum vulgare subs... 131 4e-030
gb|BQ767787.1|BQ767787 EBro08_SQ009_H22_R root, 3 week, dro... 114 5e-030
gb|BJ460714.1|BJ460714 BJ460714 K. Sato unpublished cDNA li... 130 6e-030
gb|BG365461.2|BG365461 HVSMEi0002M09f Hordeum vulgare 20 DA... 92 1e-029
gb|BI957183.1|BI957183 HVSMEn0007P24f Hordeum vulgare rachi... 93 2e-029
gb|BI959771.1|BI959771 HVSMEn0021G03f Hordeum vulgare rachi... 92 2e-029
gb|BG310251.1|BG310251 HVSMEc0016K12f Hordeum vulgare seedl... 104 5e-029
gb|CB880524.1|CB880524 HM06N05w HM Hordeum vulgare subsp. v... 91 5e-029
gb|BQ661443.1|BQ661443 HM03I08u HM Hordeum vulgare subsp. v... 91 5e-029
gb|CK124612.1|CK124612 BES1824109m10 BES1824 Hordeum vulgar... 100 1e-028
gb|CV063456.1|CV063456 BNEL8E2 Barley EST endosperm library... 104 3e-028
gb|BI959812.1|BI959812 HVSMEn0021L03f Hordeum vulgare rachi... 102 5e-028
gb|BM442090.2|BM442090 EBan01_SQ002_C16_R anther, yellow st... 123 7e-028
gb|CV054400.1|CV054400 BNEL10B12 Barley EST endosperm libra... 102 1e-027
gb|CA028060.1|CA028060 HZ60N21r HZ Hordeum vulgare subsp. v... 88 2e-027
gb|AV918397.1|AV918397 AV918397 K. Sato unpublished cDNA li... 122 2e-027
gb|CB876346.1|CB876346 HX11A03w HX Hordeum vulgare subsp. v... 122 2e-027
gb|BG368126.2|BG368126 HVSMEi0015M21f Hordeum vulgare 20 DA... 118 2e-027
gb|CV061225.1|CV061225 BNEL66d10 Barley EST endosperm libra... 101 3e-027
gb|AV918336.1|AV918336 AV918336 K. Sato unpublished cDNA li... 120 6e-027
gb|BQ753409.1|BQ753409 EBan01_SQ004_D03_R anther, yellow st... 67 8e-027
gb|BU983094.1|BU983094 HA28I14r HA Hordeum vulgare subsp. v... 99 1e-026
gb|BE421427.1|BE421427 HWM009.B12 ITEC HWM Barley Leaf Libr... 118 2e-026
gb|BI949344.1|BI949344 HVSMEl0013G22f Hordeum vulgare spike... 98 3e-026
gb|BI959378.1|BI959378 HVSMEn0019H04f Hordeum vulgare rachi... 79 7e-026
gb|AV923254.1|AV923254 AV923254 K. Sato unpublished cDNA li... 100 1e-025
gb|BF625170.3|BF625170 HVSMEa0006D08f Hordeum vulgare seedl... 99 3e-025
gb|CW512145.1|CW512145 ToNAR_Morex_118b Morex Exon trapped ... 97 1e-024
gb|BG299356.2|BG299356 HVSMEa0019J09f Hordeum vulgare seedl... 112 1e-024
gb|BQ760850.1|BQ760850 EBro03_SQ003_K11_R root, 3 week, wat... 91 2e-024
gb|BU978694.1|BU978694 HA14A06r HA Hordeum vulgare subsp. v... 86 3e-024
gb|CA001233.1|CA001233 HS18N14u HS Hordeum vulgare subsp. v... 111 5e-024
gb|CB882163.1|CB882163 HL01B01w HL Hordeum vulgare subsp. v... 87 7e-024
gb|BF256315.1|BF256315 HVSMEf0009N16f Hordeum vulgare seedl... 110 9e-024
gb|BF618493.2|BF618493 HVSMEc0005N13f Hordeum vulgare seedl... 70 3e-023
gb|CA022206.1|CA022206 HZ42H09r HZ Hordeum vulgare subsp. v... 88 2e-022
gb|BQ764067.1|BQ764067 EBro03_SQ006_N05_R root, 3 week, wat... 82 3e-022
gb|BQ661556.1|BQ661556 HM03P13u HM Hordeum vulgare subsp. v... 105 3e-022
gb|BQ767036.1|BQ767036 EBro08_SQ007_G24_R root, 3 week, dro... 105 3e-022
gb|CA001449.1|CA001449 HS17P08u HS Hordeum vulgare subsp. v... 105 3e-022
gb|BQ662029.1|BQ662029 HR01E04u HR Hordeum vulgare subsp. v... 102 2e-021
gb|AL504600.1|AL504600 AL504600 Hordeum vulgare Barke roots... 63 3e-021
gb|CA022237.1|CA022237 HZ42I19r HZ Hordeum vulgare subsp. v... 85 4e-021
gb|BQ663461.1|BQ663461 HU02M06u HU Hordeum vulgare subsp. v... 101 4e-021
>gb|AV917139.1|AV917139 AV917139 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20o17 5', mRNA sequence
Length = 590
Score = 176 bits (379), Expect(3) = 1e-085
Identities = 71/80 (88%), Positives = 74/80 (92%)
Frame = +2 / +1
Query: 92 VAPYHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYF 271
VAPYHFDLSGTAFG+LAKPGRND+LR AGIIDIQF RV CEFPGLKVGFHVEEGS VY
Sbjct: 70 VAPYHFDLSGTAFGKLAKPGRNDELRHAGIIDIQFTRVACEFPGLKVGFHVEEGSNAVYM 249
Query: 272 AVLVEYENGDGDVVQVDLME 331
A+LVEYENGDGDVVQVDLME
Sbjct: 250 AILVEYENGDGDVVQVDLME 309
Score = 131 bits (280), Expect(3) = 1e-085
Identities = 51/60 (85%), Positives = 54/60 (90%)
Frame = +2 / +1
Query: 344 RWTPMSQSWGSIWRLDSNHRLQPPFSIRTRTDSGKTLVARDVIPLNWRPNTFYRSIVQYS 523
RWT M +SWGSIWRLDSNHRLQ PFSIR R +SGKTLVAR+VIP NWRPNTFYRSIVQYS
Sbjct: 337 RWTRMRESWGSIWRLDSNHRLQAPFSIRIRNESGKTLVARNVIPKNWRPNTFYRSIVQYS 516
Score = 116 bits (248), Expect(2) = 3e-049
Identities = 51/80 (63%), Positives = 53/80 (66%)
Frame = -1 / -1
Query: 330 SMRXXXXXXXXXXXXXXXTAK*TWVEPSSTWKPTLRPGNSQGTLANWMSMMPARRRSSLR 151
SMR A T ++PSSTW PT PGNS TL NWMSMMPA R SSLR
Sbjct: 308 SMRSTCTTSPSPFSYSTRIAMYTALDPSSTWNPTFSPGNSHATLVNWMSMMPACRSSSLR 129
Query: 150 PGLASLPKAVPLRSKW*GAT 91
PGLASLPKAVPLRSKW*GAT
Sbjct: 128 PGLASLPKAVPLRSKW*GAT 69
Score = 98.7 bits (209), Expect(2) = 3e-049
Identities = 41/59 (69%), Positives = 46/59 (77%)
Frame = -1 / -1
Query: 519 YWTMDL*NVFGLQLSGMTSRATSVLPESVRVRMEKGGCRRWLESRRQMDPHDWLMGVQR 343
YWTM+ * V GLQ GMT RATSVLP+S+R+RME G RRWLESRRQMDPHD + V R
Sbjct: 512 YWTMER*KVLGLQFLGMTLRATSVLPDSLRMRMENGAWRRWLESRRQMDPHDSRIRVHR 336
Score = 48.3 bits (99), Expect(3) = 1e-085
Identities = 18/23 (78%), Positives = 20/23 (86%)
Frame = +2 / +1
Query: 20 GSKHAACSGRTETVVITDMNYTP 88
G+KH ACSGR ETV+ITDMNY P
Sbjct: 1 GTKHKACSGRQETVMITDMNYYP 69
>gb|CK122346.1|CK122346 BES1824102p12 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010P122 5-PRIME, mRNA sequence
Length = 717
Score = 172 bits (370), Expect(3) = 5e-081
Identities = 70/82 (85%), Positives = 74/82 (90%)
Frame = +2 / +1
Query: 92 VAPYHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYF 271
VAPYHFDLSGTAFGRLAKPG ND LR +GIIDI+F RVPCEFPGLK+GFHVEE S VYF
Sbjct: 148 VAPYHFDLSGTAFGRLAKPGLNDRLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPVYF 327
Query: 272 AVLVEYENGDGDVVQVDLMEKR 337
AVLVEYE+GDGDVVQVDLME R
Sbjct: 328 AVLVEYEDGDGDVVQVDLMESR 393
Score = 124 bits (266), Expect(3) = 5e-081
Identities = 47/60 (78%), Positives = 51/60 (85%)
Frame = +2 / +1
Query: 344 RWTPMSQSWGSIWRLDSNHRLQPPFSIRTRTDSGKTLVARDVIPLNWRPNTFYRSIVQYS 523
+WT M +SWGS+WRLDSNHRLQ PFSIR R +SGKTLVA VIP NWRPNTFYRS VQYS
Sbjct: 409 KWTRMRESWGSVWRLDSNHRLQAPFSIRIRNESGKTLVANKVIPANWRPNTFYRSFVQYS 588
Score = 100 bits (214), Expect(2) = 2e-040
Identities = 49/82 (59%), Positives = 49/82 (59%)
Frame = -1 / -2
Query: 336 RFSMRXXXXXXXXXXXXXXXTAK*TWVEPSSTWKPTLRPGNSQGTLANWMSMMPARRRSS 157
R SMR TAK*T E SSTW P L PGNS GT N MSMMP R S
Sbjct: 392 RDSMRSTCTTSPSPSSYSTSTAK*TGFEYSSTWNPILSPGNSHGTRVNSMSMMPEWRSLS 213
Query: 156 LRPGLASLPKAVPLRSKW*GAT 91
L PG ASLP AVPLRSKW*GAT
Sbjct: 212 LSPGFASLPNAVPLRSKW*GAT 147
Score = 84.9 bits (179), Expect(2) = 2e-040
Identities = 36/55 (65%), Positives = 43/55 (78%)
Frame = -1 / -2
Query: 519 YWTMDL*NVFGLQLSGMTSRATSVLPESVRVRMEKGGCRRWLESRRQMDPHDWLM 355
Y T + * V GLQL+GMT ATSVLP+S+R+RME G RRWLESRRQ +PHD L+
Sbjct: 584 YCTKER*KVLGLQLAGMTLLATSVLPDSLRMRMENGAWRRWLESRRQTEPHDSLI 420
Score = 43.2 bits (88), Expect(3) = 5e-081
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = +2 / +1
Query: 26 KHAACSGRTETVVITDMNYTP 88
K +CSGRTETV+ITDMNY P
Sbjct: 85 KDQSCSGRTETVIITDMNYYP 147
>gb|CK123980.1|CK123980 BES1824106f16 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010F166 5-PRIME, mRNA sequence
Length = 750
Score = 176 bits (379), Expect(4) = 2e-079
Identities = 71/80 (88%), Positives = 74/80 (92%)
Frame = +2 / +1
Query: 92 VAPYHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYF 271
VAPYHFDLSGTAFG+LAKPGRND+LR AGIIDIQF RV CEFPGLKVGFHVEEGS VY
Sbjct: 265 VAPYHFDLSGTAFGKLAKPGRNDELRHAGIIDIQFTRVACEFPGLKVGFHVEEGSNAVYM 444
Query: 272 AVLVEYENGDGDVVQVDLME 331
A+LVEYENGDGDVVQVDLME
Sbjct: 445 AILVEYENGDGDVVQVDLME 504
Score = 116 bits (248), Expect(3) = 6e-045
Identities = 51/80 (63%), Positives = 53/80 (66%)
Frame = -1 / -2
Query: 330 SMRXXXXXXXXXXXXXXXTAK*TWVEPSSTWKPTLRPGNSQGTLANWMSMMPARRRSSLR 151
SMR A T ++PSSTW PT PGNS TL NWMSMMPA R SSLR
Sbjct: 503 SMRSTCTTSPSPFSYSTRIAMYTALDPSSTWNPTFSPGNSHATLVNWMSMMPACRSSSLR 324
Query: 150 PGLASLPKAVPLRSKW*GAT 91
PGLASLPKAVPLRSKW*GAT
Sbjct: 323 PGLASLPKAVPLRSKW*GAT 264
Score = 92.7 bits (196), Expect(4) = 2e-079
Identities = 36/44 (81%), Positives = 39/44 (88%)
Frame = +2 / +1
Query: 344 RWTPMSQSWGSIWRLDSNHRLQPPFSIRTRTDSGKTLVARDVIP 475
RWT M +SWGSIWRLDSNHRLQ PFSIR R +SGKTLVAR+VIP
Sbjct: 532 RWTRMRESWGSIWRLDSNHRLQAPFSIRIRNESGKTLVARNVIP 663
Score = 75.3 bits (158), Expect(3) = 6e-045
Identities = 31/44 (70%), Positives = 35/44 (79%)
Frame = -1 / -2
Query: 474 GMTSRATSVLPESVRVRMEKGGCRRWLESRRQMDPHDWLMGVQR 343
GMT RATSV P+S+R+RME G RRWLESRRQMDPHD + V R
Sbjct: 662 GMTLRATSVXPDSLRMRMENGAWRRWLESRRQMDPHDSRIRVHR 531
Score = 45.5 bits (93), Expect(4) = 2e-079
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = +2 / +1
Query: 23 SKHAACSGRTETVVITDMNYTP 88
+KH ACSGR ETV+ITDMNY P
Sbjct: 199 TKHKACSGRQETVMITDMNYYP 264
Score = 38.6 bits (78), Expect(4) = 2e-079
Identities = 14/16 (87%), Positives = 14/16 (87%)
Frame = +2 / +2
Query: 473 PLNWRPNTFYRSIVQY 520
P NWR NTFYRSIVQY
Sbjct: 662 PKNWRXNTFYRSIVQY 709
Score = 27.2 bits (53), Expect(3) = 6e-045
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -3 / -3
Query: 520 VLDDGSVECVWPPV 479
VLDDG+VE V PPV
Sbjct: 709 VLDDGAVEGVGPPV 668
>gb|BF254126.2|BF254126 HVSMEf0003B13f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0003B13f, mRNA sequence
Length = 789
Score = 176 bits (379), Expect(3) = 5e-075
Identities = 71/80 (88%), Positives = 74/80 (92%)
Frame = +2 / +2
Query: 92 VAPYHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYF 271
VAPYHFDLSGTAFG+LAKPGRND+LR AGIIDIQF RV CEFPGLKVGFHVEEGS VY
Sbjct: 209 VAPYHFDLSGTAFGKLAKPGRNDELRHAGIIDIQFTRVACEFPGLKVGFHVEEGSNAVYM 388
Query: 272 AVLVEYENGDGDVVQVDLME 331
A+LVEYENGDGDVVQVDLME
Sbjct: 389 AILVEYENGDGDVVQVDLME 448
Score = 116 bits (248), Expect(2) = 2e-044
Identities = 51/80 (63%), Positives = 53/80 (66%)
Frame = -1 / -1
Query: 330 SMRXXXXXXXXXXXXXXXTAK*TWVEPSSTWKPTLRPGNSQGTLANWMSMMPARRRSSLR 151
SMR A T ++PSSTW PT PGNS TL NWMSMMPA R SSLR
Sbjct: 447 SMRSTCTTSPSPFSYSTRIAMYTALDPSSTWNPTFSPGNSHATLVNWMSMMPACRSSSLR 268
Query: 150 PGLASLPKAVPLRSKW*GAT 91
PGLASLPKAVPLRSKW*GAT
Sbjct: 267 PGLASLPKAVPLRSKW*GAT 208
Score = 98.2 bits (208), Expect(3) = 5e-075
Identities = 40/55 (72%), Positives = 43/55 (78%)
Frame = +2 / +2
Query: 344 RWTPMSQSWGSIWRLDSNHRLQPPFSIRTRTDSGKTLVARDVIPLNWRPNTFYRS 508
RWT M +SWG IWRLDSNHRLQ PFSIR R +SG+TLVAR VIP RPNT Y S
Sbjct: 476 RWTRMRESWGFIWRLDSNHRLQAPFSIRIRNESGQTLVAR*VIPKKGRPNTLYCS 640
Score = 82.2 bits (173), Expect(2) = 2e-044
Identities = 34/51 (66%), Positives = 39/51 (76%)
Frame = -1 / -1
Query: 495 VFGLQLSGMTSRATSVLPESVRVRMEKGGCRRWLESRRQMDPHDWLMGVQR 343
V GL GMT RATSV P+S+R+RME G CRRWLESRRQM+PHD + V R
Sbjct: 627 VLGLPFLGMT*RATSVCPDSLRMRMENGACRRWLESRRQMNPHDSRIRVHR 475
Score = 45.5 bits (93), Expect(3) = 5e-075
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = +2 / +2
Query: 23 SKHAACSGRTETVVITDMNYTP 88
+KH ACSGR ETV+ITDMNY P
Sbjct: 143 TKHKACSGRQETVMITDMNYYP 208
>gb|BE060246.3|BE060246 HVSMEg0011L08f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0011L08f, mRNA sequence
Length = 544
Score = 172 bits (370), Expect(2) = 8e-074
Identities = 70/82 (85%), Positives = 74/82 (90%)
Frame = +2 / +2
Query: 92 VAPYHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYF 271
VAPYHFDLSGTAFGRLAKPG ND LR +GIIDI+F RVPCEFPGLK+GFHVEE S VYF
Sbjct: 20 VAPYHFDLSGTAFGRLAKPGLNDRLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPVYF 199
Query: 272 AVLVEYENGDGDVVQVDLMEKR 337
AVLVEYE+GDGDVVQVDLME R
Sbjct: 200 AVLVEYEDGDGDVVQVDLMESR 265
Score = 124 bits (266), Expect(2) = 8e-074
Identities = 47/60 (78%), Positives = 51/60 (85%)
Frame = +2 / +2
Query: 344 RWTPMSQSWGSIWRLDSNHRLQPPFSIRTRTDSGKTLVARDVIPLNWRPNTFYRSIVQYS 523
+WT M +SWGS+WRLDSNHRLQ PFSIR R +SGKTLVA VIP NWRPNTFYRS VQYS
Sbjct: 281 KWTRMRESWGSVWRLDSNHRLQAPFSIRIRNESGKTLVANKVIPANWRPNTFYRSFVQYS 460
Score = 100 bits (214), Expect(2) = 2e-040
Identities = 49/82 (59%), Positives = 49/82 (59%)
Frame = -1 / -2
Query: 336 RFSMRXXXXXXXXXXXXXXXTAK*TWVEPSSTWKPTLRPGNSQGTLANWMSMMPARRRSS 157
R SMR TAK*T E SSTW P L PGNS GT N MSMMP R S
Sbjct: 264 RDSMRSTCTTSPSPSSYSTSTAK*TGFEYSSTWNPILSPGNSHGTRVNSMSMMPEWRSLS 85
Query: 156 LRPGLASLPKAVPLRSKW*GAT 91
L PG ASLP AVPLRSKW*GAT
Sbjct: 84 LSPGFASLPNAVPLRSKW*GAT 19
Score = 84.9 bits (179), Expect(2) = 2e-040
Identities = 36/55 (65%), Positives = 43/55 (78%)
Frame = -1 / -2
Query: 519 YWTMDL*NVFGLQLSGMTSRATSVLPESVRVRMEKGGCRRWLESRRQMDPHDWLM 355
Y T + * V GLQL+GMT ATSVLP+S+R+RME G RRWLESRRQ +PHD L+
Sbjct: 456 YCTKER*KVLGLQLAGMTLLATSVLPDSLRMRMENGAWRRWLESRRQTEPHDSLI 292
>gb|BQ759881.1|BQ759881 EBpi05_SQ004_P16_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ004_P16 5', mRNA sequence
Length = 500
Score = 269 bits (582), Expect = 9e-072
Identities = 108/141 (76%), Positives = 119/141 (84%)
Frame = +2 / +2
Query: 101 YHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYFAVL 280
YHFDLSGTAFG +AKPG ++ LR +GIIDIQF RVPCEFPGLKV FHVE+GS VYFAVL
Sbjct: 2 YHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRVPCEFPGLKVTFHVEQGSNPVYFAVL 181
Query: 281 VEYENGDGDVVQVDLMEKRARRWTPMSQSWGSIWRLDSNHRLQPPFSIRTRTDSGKTLVA 460
VEYE+GDGDVVQVDLME + WTPM +SWGSIWRLDS HRLQ PFS+R +SGKTLVA
Sbjct: 182 VEYEDGDGDVVQVDLMEANSGTWTPMRESWGSIWRLDSGHRLQAPFSMRITNESGKTLVA 361
Query: 461 RDVIPLNWRPNTFYRSIVQYS 523
VIP NW P+TFYRSIVQYS
Sbjct: 362 DKVIPANWAPSTFYRSIVQYS 424
Score = 185 bits (398), Expect = 2e-046
Identities = 83/139 (59%), Positives = 91/139 (65%)
Frame = -1 / -3
Query: 519 YWTMDL*NVFGLQLSGMTSRATSVLPESVRVRMEKGGCRRWLESRRQMDPHDWLMGVQRR 340
YWTM+ * V G QL+GMT ATSVLP+S+ +RMEKG RRW ES RQ+DPHD +GV
Sbjct: 420 YWTMER*KVLGAQLAGMTLSATSVLPDSLVMRMEKGAWRRWPESSRQIDPHDSRIGVHVP 241
Query: 339 ARFSMRXXXXXXXXXXXXXXXTAK*TWVEPSSTWKPTLRPGNSQGTLANWMSMMPARRRS 160
SMR TAK T +P STWK TLRPGNS GTL NWMSMMP R
Sbjct: 240 ELASMRSTCTTSPSPSSYSTSTAKYTGFDPCSTWKVTLRPGNSHGTLLNWMSMMPECRSF 61
Query: 159 SLRPGLASLPKAVPLRSKW 103
SLRPGLA P AVPLRSKW
Sbjct: 60 SLRPGLAMAPNAVPLRSKW 4
>gb|CK122737.1|CK122737 BES1824105j22 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010J225 5-PRIME, mRNA sequence
Length = 776
Score = 180 bits (387), Expect(3) = 8e-068
Identities = 73/84 (86%), Positives = 76/84 (90%)
Frame = +2 / +1
Query: 92 VAPYHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYF 271
VAPYHFDLSGTAFG+LAKPGRND+LR AGIIDIQF RV CEFPGLKVGFHVEEGS VY
Sbjct: 382 VAPYHFDLSGTAFGKLAKPGRNDELRHAGIIDIQFTRVACEFPGLKVGFHVEEGSNAVYM 561
Query: 272 AVLVEYENGDGDVVQVDLMEKRAR 343
A+LVEYENGDGDVVQVDLME R R
Sbjct: 562 AILVEYENGDGDVVQVDLMEXRPR 633
Score = 120 bits (257), Expect(2) = 1e-036
Identities = 53/84 (63%), Positives = 55/84 (65%)
Frame = -1 / -1
Query: 342 RARFSMRXXXXXXXXXXXXXXXTAK*TWVEPSSTWKPTLRPGNSQGTLANWMSMMPARRR 163
R R SMR A T ++PSSTW PT PGNS TL NWMSMMPA R
Sbjct: 632 RGRXSMRSTCTTSPSPFSYSTRIAMYTALDPSSTWNPTFSPGNSHATLVNWMSMMPACRS 453
Query: 162 SSLRPGLASLPKAVPLRSKW*GAT 91
SSLRPGLASLPKAVPLRSKW*GAT
Sbjct: 452 SSLRPGLASLPKAVPLRSKW*GAT 381
Score = 70.3 bits (147), Expect(3) = 8e-068
Identities = 29/44 (65%), Positives = 33/44 (75%)
Frame = +2 / +3
Query: 338 ARRWTPMSQSWGSIWRLDSNHRLQPPFSIRTRTDSGKTLVARDV 469
A RWT M +SWGSIW LDS +RLQ P SIR R +SGK L AR+V
Sbjct: 645 AGRWTRMPESWGSIWGLDSXNRLQXPXSIRIRNESGKKLXARNV 776
Score = 52.4 bits (108), Expect(2) = 1e-036
Identities = 25/44 (56%), Positives = 28/44 (63%)
Frame = -1 / -2
Query: 468 TSRATSVLPESVRVRMEKGGCRRWLESRRQMDPHDWLMGVQRRA 337
T RA S P+S+R+RM G RR LESR QMDPHD V R A
Sbjct: 775 TLRAXSFXPDSLRMRMXNGXWRRXLESRPQMDPHDSGXRVHRPA 644
Score = 45.5 bits (93), Expect(3) = 8e-068
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = +2 / +1
Query: 23 SKHAACSGRTETVVITDMNYTP 88
+KH ACSGR ETV+ITDMNY P
Sbjct: 316 TKHKACSGRQETVMITDMNYYP 381
>gb|BQ465138.1|BQ465138 HU02M06r HU Hordeum vulgare subsp. vulgare cDNA clone HU02M06
5-PRIME, mRNA sequence
Length = 623
Score = 176 bits (379), Expect(4) = 2e-067
Identities = 71/80 (88%), Positives = 74/80 (92%)
Frame = +2 / +2
Query: 92 VAPYHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYF 271
VAPYHFDLSGTAFG+LAKPGRND+LR AGIIDIQF RV CEFPGLKVGFHVEEGS VY
Sbjct: 230 VAPYHFDLSGTAFGKLAKPGRNDELRHAGIIDIQFTRVACEFPGLKVGFHVEEGSNAVYM 409
Query: 272 AVLVEYENGDGDVVQVDLME 331
A+LVEYENGDGDVVQVDLME
Sbjct: 410 AILVEYENGDGDVVQVDLME 469
Score = 116 bits (248), Expect(2) = 1e-036
Identities = 51/80 (63%), Positives = 53/80 (66%)
Frame = -1 / -3
Query: 330 SMRXXXXXXXXXXXXXXXTAK*TWVEPSSTWKPTLRPGNSQGTLANWMSMMPARRRSSLR 151
SMR A T ++PSSTW PT PGNS TL NWMSMMPA R SSLR
Sbjct: 468 SMRSTCTTSPSPFSYSTRIAMYTALDPSSTWNPTFSPGNSHATLVNWMSMMPACRSSSLR 289
Query: 150 PGLASLPKAVPLRSKW*GAT 91
PGLASLPKAVPLRSKW*GAT
Sbjct: 288 PGLASLPKAVPLRSKW*GAT 229
Score = 62.9 bits (131), Expect(4) = 2e-067
Identities = 25/30 (83%), Positives = 27/30 (90%)
Frame = +2 / +3
Query: 380 WRLDSNHRLQPPFSIRTRTDSGKTLVARDV 469
WRLDSNHRLQ PFSIR R +SGKTLVAR+V
Sbjct: 534 WRLDSNHRLQAPFSIRIRNESGKTLVARNV 623
Score = 56.5 bits (117), Expect(2) = 1e-036
Identities = 23/30 (76%), Positives = 26/30 (86%)
Frame = -1 / -2
Query: 468 TSRATSVLPESVRVRMEKGGCRRWLESRRQ 379
T RATSVLP+S+R+RME G RRWLESRRQ
Sbjct: 622 TLRATSVLPDSLRMRMENGAWRRWLESRRQ 533
Score = 45.5 bits (93), Expect(4) = 2e-067
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = +2 / +2
Query: 23 SKHAACSGRTETVVITDMNYTP 88
+KH ACSGR ETV+ITDMNY P
Sbjct: 164 TKHKACSGRQETVMITDMNYYP 229
Score = 27.6 bits (54), Expect(4) = 2e-067
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2 / +2
Query: 344 RWTPMSQSWGSI 379
RWT M +SWGSI
Sbjct: 497 RWTRMRESWGSI 532
>gb|BQ459628.1|BQ459628 HA08J01r HA Hordeum vulgare subsp. vulgare cDNA clone HA08J01
5-PRIME, mRNA sequence
Length = 470
Score = 124 bits (266), Expect(3) = 2e-062
Identities = 47/60 (78%), Positives = 51/60 (85%)
Frame = +2 / +1
Query: 344 RWTPMSQSWGSIWRLDSNHRLQPPFSIRTRTDSGKTLVARDVIPLNWRPNTFYRSIVQYS 523
+WT M +SWGS+WRLDSNHRLQ PFSIR R +SGKTLVA VIP NWRPNTFYRS VQYS
Sbjct: 241 KWTRMRESWGSVWRLDSNHRLQAPFSIRIRNESGKTLVANKVIPANWRPNTFYRSFVQYS 420
Score = 100 bits (212), Expect(3) = 2e-062
Identities = 40/46 (86%), Positives = 42/46 (91%)
Frame = +2 / +1
Query: 200 RVPCEFPGLKVGFHVEEGSTQVYFAVLVEYENGDGDVVQVDLMEKR 337
RVPCEFPGLK+GFHVEE S VYFAVLVEYE+GDGDVVQVDLME R
Sbjct: 88 RVPCEFPGLKIGFHVEEYSNPVYFAVLVEYEDGDGDVVQVDLMESR 225
Score = 84.9 bits (179), Expect(2) = 4e-024
Identities = 36/55 (65%), Positives = 43/55 (78%)
Frame = -1 / -1
Query: 519 YWTMDL*NVFGLQLSGMTSRATSVLPESVRVRMEKGGCRRWLESRRQMDPHDWLM 355
Y T + * V GLQL+GMT ATSVLP+S+R+RME G RRWLESRRQ +PHD L+
Sbjct: 416 YCTKER*KVLGLQLAGMTLLATSVLPDSLRMRMENGAWRRWLESRRQTEPHDSLI 252
Score = 83.1 bits (175), Expect(2) = 5e-023
Identities = 38/58 (65%), Positives = 44/58 (75%)
Frame = -3 / -3
Query: 520 VLDDGSVECVWPPVEWDDVACDERLAGVGAGADGEGWLQAVVGVEAPDGSP*LAHGRP 347
VL +G+VE V PPV DD+ DERLAG+ A ADGE L+AVVGVEAPDG+P L H RP
Sbjct: 417 VLHEGAVEGVGPPVGRDDLVGDERLAGLVADADGEWRLEAVVGVEAPDGAPRLPHPRP 244
Score = 53.3 bits (110), Expect(3) = 2e-062
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = +2 / +2
Query: 113 LSGTAFGRLAKPGRNDDLRRAGIIDIQ 193
LSGTAFGRLAKPG ND LR +GIIDI+
Sbjct: 2 LSGTAFGRLAKPGLNDRLRHSGIIDIE 82
Score = 46.9 bits (96), Expect(2) = 4e-024
Identities = 23/42 (54%), Positives = 24/42 (57%)
Frame = -1 / -3
Query: 237 KPTLRPGNSQGTLANWMSMMPARRRSSLRPGLASLPKAVPLR 112
+P L P N MSMMP R SL PG ASLP AVPLR
Sbjct: 126 EPDLEPRELARHPCNSMSMMPEWRSLSLSPGFASLPNAVPLR 1
Score = 44.1 bits (90), Expect(2) = 5e-023
Identities = 22/45 (48%), Positives = 22/45 (48%)
Frame = -1 / -1
Query: 336 RFSMRXXXXXXXXXXXXXXXTAK*TWVEPSSTWKPTLRPGNSQGT 202
R SMR TAK*T E SSTW P L PGNS GT
Sbjct: 224 RDSMRSTCTTSPSPSSYSTSTAK*TGFEYSSTWNPILSPGNSHGT 90
>gb|BE454367.2|BE454367 HVSMEh0093N18f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0093N18f, mRNA sequence
Length = 870
Score = 172 bits (370), Expect(3) = 3e-061
Identities = 70/82 (85%), Positives = 74/82 (90%)
Frame = +2 / +1
Query: 92 VAPYHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYF 271
VAPYHFDLSGTAFGRLAKPG ND LR +GIIDI+F RVPCEFPGLK+GFHVEE S VYF
Sbjct: 31 VAPYHFDLSGTAFGRLAKPGLNDRLRHSGIIDIEFTRVPCEFPGLKIGFHVEEYSNPVYF 210
Query: 272 AVLVEYENGDGDVVQVDLMEKR 337
AVLVEYE+GDGDVVQVDLME R
Sbjct: 211 AVLVEYEDGDGDVVQVDLMESR 276
Score = 100 bits (214), Expect(2) = 5e-030
Identities = 49/82 (59%), Positives = 49/82 (59%)
Frame = -1 / -2
Query: 336 RFSMRXXXXXXXXXXXXXXXTAK*TWVEPSSTWKPTLRPGNSQGTLANWMSMMPARRRSS 157
R SMR TAK*T E SSTW P L PGNS GT N MSMMP R S
Sbjct: 275 RDSMRSTCTTSPSPSSYSTSTAK*TGFEYSSTWNPILSPGNSHGTRVNSMSMMPEWRSLS 96
Query: 156 LRPGLASLPKAVPLRSKW*GAT 91
L PG ASLP AVPLRSKW*GAT
Sbjct: 95 LSPGFASLPNAVPLRSKW*GAT 30
Score = 78.0 bits (164), Expect(3) = 3e-061
Identities = 29/58 (50%), Positives = 37/58 (63%)
Frame = +2 / +1
Query: 344 RWTPMSQSWGSIWRLDSNHRLQPPFSIRTRTDSGKTLVARDVIPLNWRPNTFYRSIVQ 517
+WT M +SWGS+WRL+ NHRLQ PF I+ R G+TL +P WRP T R + Q
Sbjct: 292 KWTRMRESWGSVWRLNCNHRLQAPFCIQVRDKCGETLGGSMGVPGRWRPGTLCRCVEQ 465
Score = 49.6 bits (102), Expect(2) = 5e-030
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = -1 / -2
Query: 489 GLQLSGMTSRATSVLPESVRVRMEKGGCRRWLESRRQMDPHDWLM 355
GLQ G SV P R M+ G C RWL+ RRQ +PHD L+
Sbjct: 437 GLQRPGTPMLPPSVSPHLSRTWMQNGACSRWLQFRRQTEPHDSLI 303
Score = 23.5 bits (45), Expect(3) = 3e-061
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +2 / +1
Query: 59 VVITDMNYTP 88
V+ITDMNY P
Sbjct: 1 VIITDMNYYP 30
>gb|BF622288.3|BF622288 HVSMEa0002I16f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0002I16f, mRNA sequence
Length = 851
Score = 144 bits (310), Expect(3) = 1e-060
Identities = 56/82 (68%), Positives = 68/82 (82%)
Frame = +2 / +2
Query: 92 VAPYHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYF 271
V+ +HFDLSGTAFG +AK GRN++LR AGIID+QF RVPC++PGL V FHV+ GS Y
Sbjct: 290 VSRFHFDLSGTAFGAMAKDGRNEELRHAGIIDMQFRRVPCQYPGLTVTFHVQHGSNPYYL 469
Query: 272 AVLVEYENGDGDVVQVDLMEKR 337
A+LVEYENGDGDV QVD+M+ R
Sbjct: 470 AILVEYENGDGDVDQVDMMQSR 535
Score = 86.8 bits (183), Expect(3) = 1e-060
Identities = 31/57 (54%), Positives = 40/57 (70%)
Frame = +2 / +2
Query: 347 WTPMSQSWGSIWRLDSNHRLQPPFSIRTRTDSGKTLVARDVIPLNWRPNTFYRSIVQ 517
W PM++SWGSIWR+D+ +Q PFS+R +SGKTLVA V P +W PN Y S +Q
Sbjct: 581 WVPMTESWGSIWRMDTRRPMQGPFSLRITNESGKTLVADQVNPGDWEPNEIYSSFIQ 751
Score = 82.6 bits (174), Expect(2) = 3e-027
Identities = 37/57 (64%), Positives = 40/57 (70%)
Frame = -1 / -3
Query: 273 AK*TWVEPSSTWKPTLRPGNSQGTLANWMSMMPARRRSSLRPGLASLPKAVPLRSKW 103
A+* +EP TW T+ PG GTL N MSMMPA R SSLRP LA PKAVPLRSKW
Sbjct: 471 AR**GLEPCCTWNVTVSPGYWHGTLLNCMSMMPACRSSSLRPSLAMAPKAVPLRSKW 301
Score = 58.8 bits (122), Expect(2) = 3e-027
Identities = 28/60 (46%), Positives = 34/60 (56%)
Frame = -3 / -2
Query: 517 LDDGSVECVWPPVEWDDVACDERLAGVGAGADGEGWLQAVVGVEAPDGSP*LAHGRPAAG 338
LD+G+V+ V PV D+ DERLAG+ A EG L V PDG+P L HG P G
Sbjct: 751 LDEGAVDFVGLPVAGIDLVGDERLAGLVGDAQREGALHGAPCVHPPDGAPGLGHGHPLPG 572
Score = 40.0 bits (81), Expect(3) = 1e-060
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = +2 / +2
Query: 29 HAACSGRTETVVITDMNYTP 88
H ACSG ETV+ITDMNY P
Sbjct: 230 HPACSGVPETVIITDMNYYP 289
>gb|BF260026.3|BF260026 HVSMEf0020O13f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0020O13f, mRNA sequence
Length = 535
Score = 231 bits (499), Expect = 3e-060
Identities = 92/135 (68%), Positives = 106/135 (78%)
Frame = +2 / +1
Query: 119 GTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYFAVLVEYENG 298
GTAFG LAK G N+ LR +GIIDIQF RVPC FPGLK+ FHV EGS VY AVL+EYE+
Sbjct: 1 GTAFGALAKSGLNEKLRHSGIIDIQFRRVPCNFPGLKINFHVVEGSNAVYLAVLIEYEDM 180
Query: 299 DGDVVQVDLMEKRARRWTPMSQSWGSIWRLDSNHRLQPPFSIRTRTDSGKTLVARDVIPL 478
DGDV+QVD+ E + W M +SWGSIWR+DSNHRLQ PFS+R +DSGK LVA +VIP
Sbjct: 181 DGDVIQVDMKEANSGSWMAMRESWGSIWRMDSNHRLQGPFSMRITSDSGKKLVANNVIPA 360
Query: 479 NWRPNTFYRSIVQYS 523
NWRPNT YRS VQ+S
Sbjct: 361 NWRPNTDYRSFVQFS 405
Score = 152 bits (326), Expect = 2e-036
Identities = 72/138 (52%), Positives = 84/138 (60%)
Frame = -1 / -3
Query: 534 GIHEEYWTMDL*NVFGLQLSGMTSRATSVLPESVRVRMEKGGCRRWLESRRQMDPHDWLM 355
G ++ WT + *+V GLQL+GMT ATS LPES+ +RMEKG RRWLES RQMDPHD +
Sbjct: 416 GANQLNWTKER*SVLGLQLAGMTLLATSFLPESLVMRMEKGPWRRWLESIRQMDPHDSRI 237
Query: 354 GVQRRARFSMRXXXXXXXXXXXXXXXTAK*TWVEPSSTWKPTLRPGNSQGTLANWMSMMP 175
+ S TA+ T +EPS+TWK LRPG GTL NWMSMMP
Sbjct: 236 AIHDPELASFMSTWITSPSMSSYSISTARYTALEPSTTWKLILRPGKLHGTLLNWMSMMP 57
Query: 174 ARRRSSLRPGLASLPKAV 121
R SLRP LA PKAV
Sbjct: 56 EWRSFSLRPDLARAPKAV 3
>gb|BF253787.2|BF253787 HVSMEf0002C01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0002C01f, mRNA sequence
Length = 823
Score = 174 bits (374), Expect(3) = 3e-059
Identities = 70/80 (87%), Positives = 73/80 (91%)
Frame = +2 / +3
Query: 92 VAPYHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYF 271
VAPYHFDLSGTAFG+LAKPGRND+LR AGIIDIQF RV CEFPGLKVGFHVEEGS VY
Sbjct: 33 VAPYHFDLSGTAFGKLAKPGRNDELRHAGIIDIQFTRVACEFPGLKVGFHVEEGSNAVYM 212
Query: 272 AVLVEYENGDGDVVQVDLME 331
A+LVEYENGDGDVV VDLME
Sbjct: 213 AILVEYENGDGDVVHVDLME 272
Score = 117 bits (251), Expect(2) = 2e-036
Identities = 51/81 (62%), Positives = 54/81 (66%)
Frame = -1 / -1
Query: 333 FSMRXXXXXXXXXXXXXXXTAK*TWVEPSSTWKPTLRPGNSQGTLANWMSMMPARRRSSL 154
+SMR A T ++PSSTW PT PGNS TL NWMSMMPA R SSL
Sbjct: 274 YSMRSTCTTSPSPFSYSTRIAMYTALDPSSTWNPTFSPGNSHATLVNWMSMMPACRSSSL 95
Query: 153 RPGLASLPKAVPLRSKW*GAT 91
RPGLASLPKAVPLRSKW*GAT
Sbjct: 94 RPGLASLPKAVPLRSKW*GAT 32
Score = 70.3 bits (147), Expect(3) = 3e-059
Identities = 27/44 (61%), Positives = 33/44 (75%)
Frame = +2 / +3
Query: 344 RWTPMSQSWGSIWRLDSNHRLQPPFSIRTRTDSGKTLVARDVIP 475
RWTPM +SWGSIWRL NH +Q P+SIR R + G TL+ R +IP
Sbjct: 300 RWTPMLKSWGSIWRLYYNHGIQTPYSIRIRCEFG*TLIMRILIP 431
Score = 54.2 bits (112), Expect(2) = 2e-036
Identities = 25/48 (52%), Positives = 30/48 (62%)
Frame = -1 / -1
Query: 486 LQLSGMTSRATSVLPESVRVRMEKGGCRRWLESRRQMDPHDWLMGVQR 343
LQ+ G+ R V P S R+R+E G C WL RRQMDPHD +GV R
Sbjct: 442 LQI*GIKMRIMRV*PNSHRMRIEYGVCIPWL*YRRQMDPHDLSIGVHR 299
Score = 22.6 bits (43), Expect(3) = 3e-059
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +2 / +3
Query: 59 VVITDMNYTP 88
V+ITDMNY P
Sbjct: 3 VMITDMNYYP 32
>gb|CA017263.1|CA017263 HV14A15u HV Hordeum vulgare subsp. vulgare cDNA clone HV14A15
3-PRIME, mRNA sequence
Length = 569
Score = 131 bits (280), Expect(2) = 4e-058
Identities = 51/60 (85%), Positives = 54/60 (90%)
Frame = +2 / -2
Query: 344 RWTPMSQSWGSIWRLDSNHRLQPPFSIRTRTDSGKTLVARDVIPLNWRPNTFYRSIVQYS 523
RWT M +SWGSIWRLDSNHRLQ PFSIR R +SGKTLVAR+VIP NWRPNTFYRSIVQYS
Sbjct: 385 RWTRMRESWGSIWRLDSNHRLQAPFSIRIRNESGKTLVARNVIPKNWRPNTFYRSIVQYS 206
Score = 113 bits (242), Expect(2) = 4e-058
Identities = 46/52 (88%), Positives = 47/52 (90%)
Frame = +2 / -2
Query: 176 GIIDIQFARVPCEFPGLKVGFHVEEGSTQVYFAVLVEYENGDGDVVQVDLME 331
GIIDIQF RV CEFPGLKVGFHVEEGS VY A+LVEYENGDGDVVQVDLME
Sbjct: 568 GIIDIQFTRVACEFPGLKVGFHVEEGSNAVYMAILVEYENGDGDVVQVDLME 413
Score = 98.7 bits (209), Expect(2) = 2e-032
Identities = 41/59 (69%), Positives = 46/59 (77%)
Frame = -1 / +3
Query: 519 YWTMDL*NVFGLQLSGMTSRATSVLPESVRVRMEKGGCRRWLESRRQMDPHDWLMGVQR 343
YWTM+ * V GLQ GMT RATSVLP+S+R+RME G RRWLESRRQMDPHD + V R
Sbjct: 210 YWTMER*KVLGLQFLGMTLRATSVLPDSLRMRMENGAWRRWLESRRQMDPHDSRIRVHR 386
Score = 60.2 bits (125), Expect(2) = 2e-032
Identities = 25/52 (48%), Positives = 27/52 (51%)
Frame = -1 / +3
Query: 330 SMRXXXXXXXXXXXXXXXTAK*TWVEPSSTWKPTLRPGNSQGTLANWMSMMP 175
SMR A T ++PSSTW PT PGNS TL NWMSMMP
Sbjct: 414 SMRSTCTTSPSPFSYSTRIAMYTALDPSSTWNPTFSPGNSHATLVNWMSMMP 569
>gb|BI956772.1|BI956772 HVSMEn0005E06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0005E06f, mRNA sequence
Length = 796
Score = 204 bits (440), Expect(2) = 3e-057
Identities = 84/128 (65%), Positives = 96/128 (75%)
Frame = +2 / +1
Query: 92 VAPYHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYF 271
VA YHFDLSGTAFG +AKPG ++ LR +GIIDIQF RVPCEFPGLKV FHVE+GS VYF
Sbjct: 313 VAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRVPCEFPGLKVTFHVEQGSNPVYF 492
Query: 272 AVLVEYENGDGDVVQVDLMEKRARRWTPMSQSWGSIWRLDSNHRLQPPFSIRTRTDSGKT 451
AVLVEY +GDGD+VQVDLME + WTPM +SWGSI RLDS H +PP S + G+
Sbjct: 493 AVLVEYXDGDGDMVQVDLMEANSCTWTPMRESWGSILRLDSGHGWRPPLSFALXNEGGRE 672
Query: 452 LVARDVIP 475
L R P
Sbjct: 673 LGGRQGDP 696
Score = 133 bits (286), Expect = 6e-031
Identities = 66/128 (51%), Positives = 73/128 (57%)
Frame = -1 / -3
Query: 474 GMTSRATSVLPESVRVRMEKGGCRRWLESRRQMDPHDWLMGVQRRARFSMRXXXXXXXXX 295
G R S LP S +KGG + ES R++DPHD +GV + SMR
Sbjct: 695 GSPCRPPSSLPPSXLNANDKGGLQPCPESSRKIDPHDSRIGVHVQELASMRSTCTMSPSP 516
Query: 294 XXXXXXTAK*TWVEPSSTWKPTLRPGNSQGTLANWMSMMPARRRSSLRPGLASLPKAVPL 115
TAK T +P STWK TLRPGNS GTL NWMSMMP R SLRPGLA P AVPL
Sbjct: 515 SSYSTSTAKYTGFDPCSTWKVTLRPGNSHGTLLNWMSMMPECRSFSLRPGLAMAPNAVPL 336
Query: 114 RSKW*GAT 91
RSKW AT
Sbjct: 335 RSKWYLAT 312
Score = 37.3 bits (75), Expect(2) = 3e-057
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +2 / +1
Query: 35 ACSGRTETVVITDMNYTP 88
+CSG ETVVITDMNY P
Sbjct: 259 SCSGNPETVVITDMNYYP 312
>gb|CV058074.1|CV058074 BNEL34a7 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL34a7 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 630
Score = 144 bits (310), Expect(2) = 2e-055
Identities = 57/78 (73%), Positives = 66/78 (84%)
Frame = +2 / +3
Query: 104 HFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYFAVLV 283
HFDLSGTAFG +AK GRND+LR AGII++QF RVPC++PGL V FHVEEGS Y A+LV
Sbjct: 3 HFDLSGTAFGAMAKYGRNDELRHAGIINMQFKRVPCQYPGLTVTFHVEEGSNPFYMAILV 182
Query: 284 EYENGDGDVVQVDLMEKR 337
EYENGDGDV Q+D+ME R
Sbjct: 183 EYENGDGDVKQLDIMESR 236
Score = 90.9 bits (192), Expect(2) = 2e-055
Identities = 32/59 (54%), Positives = 44/59 (74%)
Frame = +2 / +3
Query: 344 RWTPMSQSWGSIWRLDSNHRLQPPFSIRTRTDSGKTLVARDVIPLNWRPNTFYRSIVQY 520
+W PM +SWGSIWR+D++H + PFS+R +SGKTLVA VI +W+PN Y S+VQ+
Sbjct: 276 QWVPMKESWGSIWRMDAHHPMHGPFSLRVTNESGKTLVADQVIXGDWKPNKTYSSLVQF 452
Score = 79.9 bits (168), Expect(2) = 4e-027
Identities = 36/57 (63%), Positives = 39/57 (68%)
Frame = -1 / -3
Query: 273 AK*TWVEPSSTWKPTLRPGNSQGTLANWMSMMPARRRSSLRPGLASLPKAVPLRSKW 103
A * +PSSTW T+ PG GTL N M +MPA R SSLRP LA PKAVPLRSKW
Sbjct: 172 AM*NGFDPSSTWNVTVNPGYWHGTLLNCMLIMPAWRSSSLRPYLAMAPKAVPLRSKW 2
Score = 61.1 bits (127), Expect(2) = 4e-027
Identities = 27/55 (49%), Positives = 32/55 (58%)
Frame = -1 / -3
Query: 516 WTMDL*NVFGLQLSGMTSRATSVLPESVRVRMEKGGCRRWLESRRQMDPHDWLMG 352
WT +L* + G Q MT ATSV P+S+ R E G C W S Q+DPHD MG
Sbjct: 448 WTREL*VLLGFQSPXMTWSATSVFPDSLVTRNENGPCMGWWASILQIDPHDSFMG 284
>gb|CK124171.1|CK124171 BES1824107e17 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010E177 5-PRIME, mRNA sequence
Length = 751
Score = 124 bits (266), Expect(2) = 4e-055
Identities = 47/60 (78%), Positives = 51/60 (85%)
Frame = +2 / +1
Query: 344 RWTPMSQSWGSIWRLDSNHRLQPPFSIRTRTDSGKTLVARDVIPLNWRPNTFYRSIVQYS 523
+WT M +SWGS+WRLDSNHRLQ PFSIR R +SGKTLVA VIP NWRPNTFYRS VQYS
Sbjct: 172 KWTRMRESWGSVWRLDSNHRLQAPFSIRIRNESGKTLVANKVIPANWRPNTFYRSFVQYS 351
Score = 110 bits (234), Expect(2) = 4e-055
Identities = 44/52 (84%), Positives = 47/52 (90%)
Frame = +2 / +1
Query: 182 IDIQFARVPCEFPGLKVGFHVEEGSTQVYFAVLVEYENGDGDVVQVDLMEKR 337
IDI+F RVPCEFPGLK+GFHVEE S VYFAVLVEYE+GDGDVVQVDLME R
Sbjct: 1 IDIEFTRVPCEFPGLKIGFHVEEYSNPVYFAVLVEYEDGDGDVVQVDLMESR 156
Score = 84.9 bits (179), Expect(2) = 6e-025
Identities = 36/55 (65%), Positives = 43/55 (78%)
Frame = -1 / -3
Query: 519 YWTMDL*NVFGLQLSGMTSRATSVLPESVRVRMEKGGCRRWLESRRQMDPHDWLM 355
Y T + * V GLQL+GMT ATSVLP+S+R+RME G RRWLESRRQ +PHD L+
Sbjct: 347 YCTKER*KVLGLQLAGMTLLATSVLPDSLRMRMENGAWRRWLESRRQTEPHDSLI 183
Score = 48.7 bits (100), Expect(2) = 6e-025
Identities = 25/51 (49%), Positives = 25/51 (49%)
Frame = -1 / -3
Query: 336 RFSMRXXXXXXXXXXXXXXXTAK*TWVEPSSTWKPTLRPGNSQGTLANWMS 184
R SMR TAK*T E SSTW P L PGNS GT N MS
Sbjct: 155 RDSMRSTCTTSPSPSSYSTSTAK*TGFEYSSTWNPILSPGNSHGTRVNSMS 3
>gb|BI959138.1|BI959138 HVSMEn0018F10f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0018F10f, mRNA sequence
Length = 669
Score = 161 bits (347), Expect(3) = 4e-055
Identities = 65/86 (75%), Positives = 73/86 (84%)
Frame = +2 / +3
Query: 92 VAPYHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYF 271
VA YHFDLSGTAFG +AKPG ++ LR +GIIDIQF RVPCEFPGLKV FHVE+GS VYF
Sbjct: 330 VAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRVPCEFPGLKVTFHVEQGSNPVYF 509
Query: 272 AVLVEYENGDGDVVQVDLMEKRARRW 349
AVLVEYE+GDGD+VQVDLME + W
Sbjct: 510 AVLVEYEDGDGDLVQVDLMEANSGTW 587
Score = 103 bits (220), Expect(2) = 3e-029
Identities = 48/80 (60%), Positives = 49/80 (61%)
Frame = -1 / -3
Query: 330 SMRXXXXXXXXXXXXXXXTAK*TWVEPSSTWKPTLRPGNSQGTLANWMSMMPARRRSSLR 151
SMR TAK T +P STWK TLRPGNS GTL NWMSMMP R SLR
Sbjct: 568 SMRSTCTKSPSPSSYSTSTAKYTGFDPCSTWKVTLRPGNSHGTLLNWMSMMPECRSFSLR 389
Query: 150 PGLASLPKAVPLRSKW*GAT 91
PGLA P AVPLRSKW AT
Sbjct: 388 PGLAMAPNAVPLRSKWYLAT 329
Score = 54.2 bits (112), Expect(3) = 4e-055
Identities = 19/27 (70%), Positives = 23/27 (85%)
Frame = +2 / +1
Query: 344 RWTPMSQSWGSIWRLDSNHRLQPPFSI 424
R TPM +SWGSIWR++S HRLQ PFS+
Sbjct: 583 RGTPMRESWGSIWRVESGHRLQAPFSM 663
Score = 44.1 bits (90), Expect(2) = 3e-029
Identities = 17/27 (62%), Positives = 20/27 (74%)
Frame = -1 / -2
Query: 423 MEKGGCRRWLESRRQMDPHDWLMGVQR 343
MEKG RRW +S RQ+DPHD +GV R
Sbjct: 662 MEKGAWRRWPDSTRQIDPHDSRIGVPR 582
Score = 37.3 bits (75), Expect(3) = 4e-055
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +2 / +3
Query: 35 ACSGRTETVVITDMNYTP 88
+CSG ETVVITDMNY P
Sbjct: 276 SCSGNPETVVITDMNYYP 329
>gb|CA019997.1|CA019997 HV14A15r HV Hordeum vulgare subsp. vulgare cDNA clone HV14A15
5-PRIME, mRNA sequence
Length = 616
Score = 176 bits (379), Expect(3) = 5e-054
Identities = 71/80 (88%), Positives = 74/80 (92%)
Frame = +2 / +1
Query: 92 VAPYHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYF 271
VAPYHFDLSGTAFG+LAKPGRND+LR AGIIDIQF RV CEFPGLKVGFHVEEGS VY
Sbjct: 313 VAPYHFDLSGTAFGKLAKPGRNDELRHAGIIDIQFTRVACEFPGLKVGFHVEEGSNAVYM 492
Query: 272 AVLVEYENGDGDVVQVDLME 331
A+LVEYENGDGDVVQVDLME
Sbjct: 493 AILVEYENGDGDVVQVDLME 552
Score = 116 bits (248), Expect(2) = 7e-027
Identities = 51/80 (63%), Positives = 53/80 (66%)
Frame = -1 / -3
Query: 330 SMRXXXXXXXXXXXXXXXTAK*TWVEPSSTWKPTLRPGNSQGTLANWMSMMPARRRSSLR 151
SMR A T ++PSSTW PT PGNS TL NWMSMMPA R SSLR
Sbjct: 551 SMRSTCTTSPSPFSYSTRIAMYTALDPSSTWNPTFSPGNSHATLVNWMSMMPACRSSSLR 372
Query: 150 PGLASLPKAVPLRSKW*GAT 91
PGLASLPKAVPLRSKW*GAT
Sbjct: 371 PGLASLPKAVPLRSKW*GAT 312
Score = 45.5 bits (93), Expect(3) = 5e-054
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = +2 / +1
Query: 23 SKHAACSGRTETVVITDMNYTP 88
+KH ACSGR ETV+ITDMNY P
Sbjct: 247 TKHKACSGRQETVMITDMNYYP 312
Score = 27.6 bits (54), Expect(3) = 5e-054
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2 / +1
Query: 344 RWTPMSQSWGSI 379
RWT M +SWGSI
Sbjct: 580 RWTRMRESWGSI 615
Score = 23.5 bits (45), Expect(2) = 7e-027
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = -3 / -2
Query: 379 DGSP*LAHGRP 347
DGSP LAH RP
Sbjct: 615 DGSPRLAHPRP 583
>gb|AV928430.1|AV928430 AV928430 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basdg18 3', mRNA sequence
Length = 704
Score = 209 bits (450), Expect = 1e-053
Identities = 82/120 (68%), Positives = 95/120 (79%)
Frame = +2 / -2
Query: 164 LRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYFAVLVEYENGDGDVVQVDLMEKRAR 343
LR +GIIDIQF RVPC FPGLK+ FHV EGS VY AVL+EYE+ DGDV+QVD+ E +
Sbjct: 700 LRHSGIIDIQFRRVPCNFPGLKINFHVVEGSNAVYLAVLIEYEDMDGDVIQVDMKEANSG 521
Query: 344 RWTPMSQSWGSIWRLDSNHRLQPPFSIRTRTDSGKTLVARDVIPLNWRPNTFYRSIVQYS 523
W M +SWGSIWR+DSNHRLQ PFS+R +DSGK LVA +VIP NWRPNT YRS VQ+S
Sbjct: 520 SWMAMRESWGSIWRMDSNHRLQGPFSMRITSDSGKKLVANNVIPANWRPNTDYRSFVQFS 341
Score = 133 bits (284), Expect = 1e-030
Identities = 62/123 (50%), Positives = 74/123 (60%)
Frame = -1 / +3
Query: 534 GIHEEYWTMDL*NVFGLQLSGMTSRATSVLPESVRVRMEKGGCRRWLESRRQMDPHDWLM 355
G ++ WT + *+V GLQL+GMT ATS LPES+ +RMEKG RRWLES RQMDPHD +
Sbjct: 330 GANQLNWTKER*SVLGLQLAGMTLLATSFLPESLVMRMEKGPWRRWLESIRQMDPHDSRI 509
Query: 354 GVQRRARFSMRXXXXXXXXXXXXXXXTAK*TWVEPSSTWKPTLRPGNSQGTLANWMSMMP 175
+ S TA+ T +EPS+TWK LRPG GTL NWMSMMP
Sbjct: 510 AIHDPELASFMSTWITSPSMSSYSISTARYTALEPSTTWKLILRPGKLHGTLLNWMSMMP 689
Query: 174 ARR 166
R
Sbjct: 690 EWR 698
>gb|BM101447.2|BM101447 EBpi01_SQ003_O01_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ003_O01 5', mRNA sequence
Length = 452
Score = 131 bits (280), Expect(2) = 1e-052
Identities = 51/60 (85%), Positives = 54/60 (90%)
Frame = +2 / +1
Query: 344 RWTPMSQSWGSIWRLDSNHRLQPPFSIRTRTDSGKTLVARDVIPLNWRPNTFYRSIVQYS 523
RWT M +SWGSIWRLDSNHRLQ PFSIR R +SGKTLVAR+VIP NWRPNTFYRSIVQYS
Sbjct: 157 RWTRMRESWGSIWRLDSNHRLQAPFSIRIRNESGKTLVARNVIPKNWRPNTFYRSIVQYS 336
Score = 98.7 bits (209), Expect(2) = 2e-025
Identities = 41/59 (69%), Positives = 46/59 (77%)
Frame = -1 / -1
Query: 519 YWTMDL*NVFGLQLSGMTSRATSVLPESVRVRMEKGGCRRWLESRRQMDPHDWLMGVQR 343
YWTM+ * V GLQ GMT RATSVLP+S+R+RME G RRWLESRRQMDPHD + V R
Sbjct: 332 YWTMER*KVLGLQFLGMTLRATSVLPDSLRMRMENGAWRRWLESRRQMDPHDSRIRVHR 156
Score = 95.5 bits (202), Expect(2) = 1e-052
Identities = 38/43 (88%), Positives = 39/43 (90%)
Frame = +2 / +1
Query: 203 VPCEFPGLKVGFHVEEGSTQVYFAVLVEYENGDGDVVQVDLME 331
V CEFPGLKVGFHVEEGS VY A+LVEYENGDGDVVQVDLME
Sbjct: 1 VACEFPGLKVGFHVEEGSNAVYMAILVEYENGDGDVVQVDLME 129
Score = 36.3 bits (73), Expect(2) = 2e-025
Identities = 16/40 (40%), Positives = 18/40 (45%)
Frame = -1 / -1
Query: 330 SMRXXXXXXXXXXXXXXXTAK*TWVEPSSTWKPTLRPGNS 211
SMR A T ++PSSTW PT PGNS
Sbjct: 128 SMRSTCTTSPSPFSYSTRIAMYTALDPSSTWNPTFSPGNS 9
>gb|BF628930.2|BF628930 HVSMEb0009C23f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0009C23f, mRNA sequence
Length = 762
Score = 187 bits (403), Expect(2) = 1e-051
Identities = 74/108 (68%), Positives = 84/108 (77%)
Frame = +2 / +3
Query: 92 VAPYHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYF 271
VA YHFDLSGTAFG LAK G N+ LR +GIIDIQF RVPC FPGLK+ FHV EGS VY
Sbjct: 435 VAQYHFDLSGTAFGALAKSGLNEKLRHSGIIDIQFRRVPCNFPGLKINFHVVEGSNAVYL 614
Query: 272 AVLVEYENGDGDVVQVDLMEKRARRWTPMSQSWGSIWRLDSNHRLQPP 415
AVL+EYE+ DGDV+QVD+ + W M +SWGSIWR+DSNHRLQ P
Sbjct: 615 AVLIEYEDMDGDVIQVDMKGANSGSWMAMRESWGSIWRMDSNHRLQGP 758
Score = 93.6 bits (198), Expect(2) = 1e-023
Identities = 41/61 (67%), Positives = 44/61 (72%)
Frame = -1 / -3
Query: 273 AK*TWVEPSSTWKPTLRPGNSQGTLANWMSMMPARRRSSLRPGLASLPKAVPLRSKW*GA 94
A+ T +EPS+TWK LRPG GTL NWMSMMP R SLRP LA PKAVPLRSKW A
Sbjct: 616 ARYTALEPSTTWKLILRPGKLHGTLLNWMSMMPEWRSFSLRPDLARAPKAVPLRSKWYWA 437
Query: 93 T 91
T
Sbjct: 436 T 434
Score = 35.9 bits (72), Expect(2) = 1e-051
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +2 / +3
Query: 35 ACSGRTETVVITDMNYTP 88
+CSG ETV+ITDMNY P
Sbjct: 381 SCSGNIETVMITDMNYYP 434
Score = 35.9 bits (72), Expect(2) = 1e-023
Identities = 14/18 (77%), Positives = 14/18 (77%)
Frame = -1 / -3
Query: 417 KGGCRRWLESRRQMDPHD 364
KG RWLES RQMDPHD
Sbjct: 760 KGP*SRWLESIRQMDPHD 707
>gb|BM097618.2|BM097618 EBem04_SQ002_D15_R embryo, 12 DPA, no treatment, cv Optic, EBem04
Hordeum vulgare subsp. vulgare cDNA clone
EBem04_SQ002_D15 5', mRNA sequence
Length = 477
Score = 143 bits (307), Expect(3) = 4e-050
Identities = 57/82 (69%), Positives = 67/82 (81%)
Frame = +2 / +3
Query: 92 VAPYHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYF 271
V+ YHFDLSGTAFG +AK GRND+LR AGIID+QF RVPC++PGL V F V+ GS Y
Sbjct: 114 VSRYHFDLSGTAFGAMAKYGRNDELRHAGIIDMQFKRVPCQYPGLTVTFRVQHGSNPNYL 293
Query: 272 AVLVEYENGDGDVVQVDLMEKR 337
A+LVEYE+GDGDV QVD+ME R
Sbjct: 294 AILVEYEDGDGDVAQVDIMESR 359
Score = 52.8 bits (109), Expect(3) = 4e-050
Identities = 19/27 (70%), Positives = 21/27 (77%)
Frame = +2 / +3
Query: 347 WTPMSQSWGSIWRLDSNHRLQPPFSIR 427
WTPM +SWGSIWRLD LQ PFS+R
Sbjct: 387 WTPMRESWGSIWRLDRLRPLQGPFSLR 467
Score = 40.0 bits (81), Expect(3) = 4e-050
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = +2 / +3
Query: 29 HAACSGRTETVVITDMNYTP 88
H ACSG ETV+ITDMNY P
Sbjct: 54 HRACSGVPETVIITDMNYYP 113
>gb|CV055940.1|CV055940 BNEL12B5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL12B5 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 614
Score = 122 bits (261), Expect(2) = 6e-050
Identities = 48/69 (69%), Positives = 57/69 (82%)
Frame = +2 / -2
Query: 131 GRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYFAVLVEYENGDGDV 310
G +AK GRND+LR AGII++QF RVPC++PGL V FHVEEGS Y A+LVEYENGDGDV
Sbjct: 598 GAMAKYGRNDELRHAGIINMQFKRVPCQYPGLTVTFHVEEGSNPFYMAILVEYENGDGDV 419
Query: 311 VQVDLMEKR 337
Q+D+ME R
Sbjct: 418 KQLDIMESR 392
Score = 95.0 bits (201), Expect(2) = 6e-050
Identities = 33/59 (55%), Positives = 45/59 (76%)
Frame = +2 / -2
Query: 344 RWTPMSQSWGSIWRLDSNHRLQPPFSIRTRTDSGKTLVARDVIPLNWRPNTFYRSIVQY 520
+W PM +SWGSIWR+D++H + PFS+R +SGKTLVA VIP +W+PN Y S+VQ+
Sbjct: 352 QWVPMKESWGSIWRMDAHHPMHGPFSLRVTNESGKTLVADQVIPGDWKPNKTYSSLVQF 176
Score = 64.3 bits (134), Expect(2) = 1e-021
Identities = 28/55 (50%), Positives = 33/55 (60%)
Frame = -1 / +3
Query: 516 WTMDL*NVFGLQLSGMTSRATSVLPESVRVRMEKGGCRRWLESRRQMDPHDWLMG 352
WT +L* + G Q GMT ATSV P+S+ R E G C W S Q+DPHD MG
Sbjct: 180 WTREL*VLLGFQSPGMTWSATSVFPDSLVTRNENGPCMGWWASILQIDPHDSFMG 344
Score = 58.3 bits (121), Expect(2) = 1e-021
Identities = 27/49 (55%), Positives = 31/49 (63%)
Frame = -1 / +3
Query: 273 AK*TWVEPSSTWKPTLRPGNSQGTLANWMSMMPARRRSSLRPGLASLPK 127
A * +PSSTW T+ PG GTL N M +MPA R SSLRP LA P+
Sbjct: 456 AM*NGFDPSSTWNVTVNPGYWHGTLLNCMLIMPAWRSSSLRPYLAMAPR 602
>gb|BI950777.1|BI950777 HVSMEl0023C15f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0023C15f, mRNA sequence
Length = 986
Score = 182 bits (393), Expect(2) = 1e-048
Identities = 68/141 (48%), Positives = 97/141 (68%)
Frame = +2 / +3
Query: 98 PYHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYFAV 277
P HFD+SGTA G +AKPG D LR G+I +Q+ RVPC++PG+ + F V++GS YF
Sbjct: 162 PCHFDMSGTALGAMAKPGMADKLRAGGVIRMQYKRVPCKYPGVNIAFKVDQGSNPFYFKT 341
Query: 278 LVEYENGDGDVVQVDLMEKRARRWTPMSQSWGSIWRLDSNHRLQPPFSIRTRTDSGKTLV 457
L+E+E+ DGD+ V L E + WT M+Q WG++WRL++ +RL+ PFS++ +DSG+ LV
Sbjct: 342 LIEFEDDDGDLKAVALKEAGSGAWTQMTQDWGALWRLNNGNRLRAPFSLQLTSDSGRKLV 521
Query: 458 ARDVIPLNWRPNTFYRSIVQY 520
+VI NW YRS+V Y
Sbjct: 522 INNVILANWNAGATYRSLVNY 584
Score = 29.9 bits (59), Expect(2) = 1e-048
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +2 / +3
Query: 23 SKHAACSGRTETVVITDMN 79
S ++ACSG+ TVVITD++
Sbjct: 81 SSNSACSGKPVTVVITDLS 137
>gb|BU980984.1|BU980984 HA22E18r HA Hordeum vulgare subsp. vulgare cDNA clone HA22E18
5-PRIME, mRNA sequence
Length = 567
Score = 118 bits (253), Expect(2) = 3e-046
Identities = 47/78 (60%), Positives = 58/78 (74%)
Frame = +2 / +3
Query: 98 PYHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYFAV 277
P HFDLSGTAFG +AKPG+ D LR AG + IQ+ RVPC + G+ V F V+ GS Y AV
Sbjct: 66 PVHFDLSGTAFGGMAKPGQADQLRAAGRLQIQYTRVPCNWRGMHVAFKVDAGSNPYYLAV 245
Query: 278 LVEYENGDGDVVQVDLME 331
L+EYE+GDGD+ V+LME
Sbjct: 246 LIEYEDGDGDLSSVELME 299
Score = 86.3 bits (182), Expect(2) = 3e-046
Identities = 31/58 (53%), Positives = 40/58 (68%)
Frame = +2 / +3
Query: 347 WTPMSQSWGSIWRLDSNHRLQPPFSIRTRTDSGKTLVARDVIPLNWRPNTFYRSIVQY 520
WT M +SWG++WR +S L PFS+R + SGKTLVA +VIP W+P YRS+V Y
Sbjct: 321 WTKMDRSWGAVWRYNSGPMLHAPFSVRLTSSSGKTLVASNVIPAGWKPGGTYRSVVNY 494
>gb|BM098205.2|BM098205 EBpi03_SQ002_N14_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ002_N14 5', mRNA sequence
Length = 550
Score = 118 bits (253), Expect(2) = 3e-046
Identities = 47/78 (60%), Positives = 58/78 (74%)
Frame = +2 / +1
Query: 98 PYHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYFAV 277
P HFDLSGTAFG +AKPG+ D LR AG + IQ+ RVPC + G+ V F V+ GS Y AV
Sbjct: 52 PVHFDLSGTAFGGMAKPGQADQLRAAGRLQIQYTRVPCNWRGMHVAFKVDAGSNPYYLAV 231
Query: 278 LVEYENGDGDVVQVDLME 331
L+EYE+GDGD+ V+LME
Sbjct: 232 LIEYEDGDGDLSSVELME 285
Score = 86.3 bits (182), Expect(2) = 3e-046
Identities = 31/58 (53%), Positives = 40/58 (68%)
Frame = +2 / +1
Query: 347 WTPMSQSWGSIWRLDSNHRLQPPFSIRTRTDSGKTLVARDVIPLNWRPNTFYRSIVQY 520
WT M +SWG++WR +S L PFS+R + SGKTLVA +VIP W+P YRS+V Y
Sbjct: 307 WTKMDRSWGAVWRYNSGPMLHAPFSVRLTSSSGKTLVASNVIPAGWKPGGTYRSVVNY 480
>gb|CV054003.1|CV054003 BNEL105f8 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL105f8 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 702
Score = 149 bits (320), Expect(3) = 5e-046
Identities = 59/82 (71%), Positives = 69/82 (84%)
Frame = +2 / +3
Query: 92 VAPYHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYF 271
V+ YHFDLSGTAFG +AK GRND+LR AGII++QF RVPC++PGL V FHVEEGS Y
Sbjct: 372 VSRYHFDLSGTAFGAMAKYGRNDELRHAGIINMQFKRVPCQYPGLTVTFHVEEGSNPFYM 551
Query: 272 AVLVEYENGDGDVVQVDLMEKR 337
A+LVEYENGDGDV Q+D+ME R
Sbjct: 552 AILVEYENGDGDVKQLDIMESR 617
Score = 40.0 bits (81), Expect(3) = 5e-046
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +2 / +3
Query: 23 SKHAACSGRTETVVITDMNYTP 88
S H ACSG +TV+ITDMNY P
Sbjct: 306 SDHPACSGVPKTVIITDMNYDP 371
Score = 33.1 bits (66), Expect(3) = 5e-046
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +2 / +3
Query: 344 RWTPMSQSWGSIWRL 388
+W PM +SW SIWR+
Sbjct: 657 QWVPMKESWXSIWRM 701
>gb|BF256653.2|BF256653 HVSMEf0010J19f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0010J19f, mRNA sequence
Length = 841
Score = 158 bits (339), Expect(2) = 7e-046
Identities = 64/77 (83%), Positives = 68/77 (88%)
Frame = +2 / +2
Query: 92 VAPYHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYF 271
VAPYHFDLSGTAFG+LAKPGRND+LR AGIIDIQF RV CEFPGLKVGFHVEEGS VY
Sbjct: 530 VAPYHFDLSGTAFGKLAKPGRNDELRHAGIIDIQFTRVACEFPGLKVGFHVEEGSNAVYM 709
Query: 272 AVLVEYENGDGDVVQVD 322
A+ VE EN DGD+VQVD
Sbjct: 710 AIPVEVENRDGDLVQVD 760
Score = 115 bits (245), Expect = 3e-025
Identities = 47/58 (81%), Positives = 49/58 (84%)
Frame = -1 / -2
Query: 264 TWVEPSSTWKPTLRPGNSQGTLANWMSMMPARRRSSLRPGLASLPKAVPLRSKW*GAT 91
T ++PSSTW PT PGNS TL NWMSMMPA R SSLRPGLASLPKAVPLRSKW*GAT
Sbjct: 702 TALDPSSTWNPTFSPGNSHATLVNWMSMMPACRSSSLRPGLASLPKAVPLRSKW*GAT 529
Score = 45.5 bits (93), Expect(2) = 7e-046
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = +2 / +2
Query: 23 SKHAACSGRTETVVITDMNYTP 88
+KH ACSGR ETV+ITDMNY P
Sbjct: 464 TKHKACSGRQETVMITDMNYYP 529
>gb|CV063217.1|CV063217 BNEL87h3 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL87h3 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 701
Score = 146 bits (313), Expect(3) = 4e-045
Identities = 58/82 (70%), Positives = 68/82 (82%)
Frame = +2 / +3
Query: 92 VAPYHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYF 271
V+ YHFDLSGTAFG +AK GRND+LR AGII++QF RVPC++P L V FHVEEGS Y
Sbjct: 378 VSRYHFDLSGTAFGAMAKYGRNDELRHAGIINMQFKRVPCQYPXLTVTFHVEEGSNPFYM 557
Query: 272 AVLVEYENGDGDVVQVDLMEKR 337
A+LVEYENGDGDV Q+D+ME R
Sbjct: 558 AILVEYENGDGDVKQLDIMESR 623
Score = 40.0 bits (81), Expect(3) = 4e-045
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +2 / +3
Query: 23 SKHAACSGRTETVVITDMNYTP 88
S H ACSG +TV+ITDMNY P
Sbjct: 312 SDHPACSGVPKTVIITDMNYDP 377
Score = 33.1 bits (66), Expect(3) = 4e-045
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2 / +3
Query: 344 RWTPMSQSWGSIW 382
+W PM +SWGSIW
Sbjct: 663 QWVPMKESWGSIW 701
>gb|AV917082.1|AV917082 AV917082 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20l09 5', mRNA sequence
Length = 323
Score = 176 bits (379), Expect(2) = 5e-045
Identities = 71/80 (88%), Positives = 74/80 (92%)
Frame = +2 / +2
Query: 92 VAPYHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYF 271
VAPYHFDLSGTAFG+LAKPGRND+LR AGIIDIQF RV CEFPGLKVGFHVEEGS VY
Sbjct: 23 VAPYHFDLSGTAFGKLAKPGRNDELRHAGIIDIQFTRVACEFPGLKVGFHVEEGSNAVYM 202
Query: 272 AVLVEYENGDGDVVQVDLME 331
A+LVEYENGDGDVVQVDLME
Sbjct: 203 AILVEYENGDGDVVQVDLME 262
Score = 116 bits (248), Expect = 1e-025
Identities = 51/80 (63%), Positives = 53/80 (66%)
Frame = -1 / -3
Query: 330 SMRXXXXXXXXXXXXXXXTAK*TWVEPSSTWKPTLRPGNSQGTLANWMSMMPARRRSSLR 151
SMR A T ++PSSTW PT PGNS TL NWMSMMPA R SSLR
Sbjct: 261 SMRSTCTTSPSPFSYSTRIAMYTALDPSSTWNPTFSPGNSHATLVNWMSMMPACRSSSLR 82
Query: 150 PGLASLPKAVPLRSKW*GAT 91
PGLASLPKAVPLRSKW*GAT
Sbjct: 81 PGLASLPKAVPLRSKW*GAT 22
Score = 24.0 bits (46), Expect(2) = 5e-045
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +2 / +2
Query: 344 RWTPMSQSWG 373
RWT M +SWG
Sbjct: 290 RWTRMRESWG 319
>gb|CB880652.1|CB880652 HM07E17w HM Hordeum vulgare subsp. vulgare cDNA clone HM07E17
3-PRIME, mRNA sequence
Length = 562
Score = 180 bits (387), Expect = 7e-045
Identities = 72/95 (75%), Positives = 79/95 (83%)
Frame = +2 / -2
Query: 239 HVEEGSTQVYFAVLVEYENGDGDVVQVDLMEKRARRWTPMSQSWGSIWRLDSNHRLQPPF 418
HVE+GS VYFAVLVEYE+GDGDVVQVDLME + WTPM +SWGSIWRLDS HRLQ PF
Sbjct: 561 HVEQGSNPVYFAVLVEYEDGDGDVVQVDLMEANSGTWTPMRESWGSIWRLDSGHRLQAPF 382
Query: 419 SIRTRTDSGKTLVARDVIPLNWRPNTFYRSIVQYS 523
S+R +SGKTLVA VIP NW P+TFYRSIVQYS
Sbjct: 381 SMRITNESGKTLVADKVIPANWAPSTFYRSIVQYS 277
Score = 103 bits (220), Expect = 8e-022
Identities = 48/94 (51%), Positives = 56/94 (59%)
Frame = -1 / +2
Query: 519 YWTMDL*NVFGLQLSGMTSRATSVLPESVRVRMEKGGCRRWLESRRQMDPHDWLMGVQRR 340
YWTM+ * V G QL+GMT ATSVLP+S+ +RMEKG RRW ES RQ+DPHD +GV
Sbjct: 281 YWTMER*KVLGAQLAGMTLSATSVLPDSLVMRMEKGAWRRWPESSRQIDPHDSRIGVHVP 460
Query: 339 ARFSMRXXXXXXXXXXXXXXXTAK*TWVEPSSTW 238
SMR TAK T +P STW
Sbjct: 461 ELASMRSTCTTSPSPSSYSTSTAKYTGFDPCSTW 562
>gb|CB881234.1|CB881234 HM09C23w HM Hordeum vulgare subsp. vulgare cDNA clone HM09C23
3-PRIME, mRNA sequence
Length = 563
Score = 180 bits (387), Expect = 7e-045
Identities = 72/95 (75%), Positives = 79/95 (83%)
Frame = +2 / -2
Query: 239 HVEEGSTQVYFAVLVEYENGDGDVVQVDLMEKRARRWTPMSQSWGSIWRLDSNHRLQPPF 418
HVE+GS VYFAVLVEYE+GDGDVVQVDLME + WTPM +SWGSIWRLDS HRLQ PF
Sbjct: 562 HVEQGSNPVYFAVLVEYEDGDGDVVQVDLMEANSGTWTPMRESWGSIWRLDSGHRLQAPF 383
Query: 419 SIRTRTDSGKTLVARDVIPLNWRPNTFYRSIVQYS 523
S+R +SGKTLVA VIP NW P+TFYRSIVQYS
Sbjct: 382 SMRITNESGKTLVADKVIPANWAPSTFYRSIVQYS 278
Score = 103 bits (220), Expect = 8e-022
Identities = 48/94 (51%), Positives = 56/94 (59%)
Frame = -1 / +3
Query: 519 YWTMDL*NVFGLQLSGMTSRATSVLPESVRVRMEKGGCRRWLESRRQMDPHDWLMGVQRR 340
YWTM+ * V G QL+GMT ATSVLP+S+ +RMEKG RRW ES RQ+DPHD +GV
Sbjct: 282 YWTMER*KVLGAQLAGMTLSATSVLPDSLVMRMEKGAWRRWPESSRQIDPHDSRIGVHVP 461
Query: 339 ARFSMRXXXXXXXXXXXXXXXTAK*TWVEPSSTW 238
SMR TAK T +P STW
Sbjct: 462 ELASMRSTCTTSPSPSSYSTSTAKYTGFDPCSTW 563
>gb|BE196421.3|BE196421 HVSMEh0092D24f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0092D24f, mRNA sequence
Length = 901
Score = 87.7 bits (185), Expect(4) = 4e-044
Identities = 35/46 (76%), Positives = 39/46 (84%)
Frame = +2 / +1
Query: 92 VAPYHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLK 229
VA YHFDLSGTAFG +AKPG ++ LR +GIIDIQF RVPCEFP LK
Sbjct: 352 VAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRVPCEFPCLK 489
Score = 54.7 bits (113), Expect(4) = 4e-044
Identities = 19/25 (76%), Positives = 20/25 (80%)
Frame = +2 / +3
Query: 347 WTPMSQSWGSIWRLDSNHRLQPPFS 421
WTPM +SWGSIW LD HRLQ PFS
Sbjct: 606 WTPMRESWGSIWGLDFGHRLQAPFS 680
Score = 54.2 bits (112), Expect(4) = 4e-044
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +2 / +3
Query: 218 PGLKVGFHVEEGSTQVYFAVLVEYENGDGDVVQ 316
P +V FHVE+ S VYFAVL EYE+GDGDVVQ
Sbjct: 477 PLSQVTFHVEQXSNPVYFAVLGEYEDGDGDVVQ 575
Score = 37.3 bits (75), Expect(4) = 4e-044
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +2 / +1
Query: 35 ACSGRTETVVITDMNYTP 88
+CSG ETVVITDMNY P
Sbjct: 298 SCSGNPETVVITDMNYYP 351
>gb|BJ463021.1|BJ463021 BJ463021 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags25g15 5', mRNA sequence
Length = 532
Score = 165 bits (355), Expect(2) = 2e-043
Identities = 61/124 (49%), Positives = 87/124 (70%)
Frame = +2 / +3
Query: 98 PYHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYFAV 277
P HFD+SGTA G +AKPG D LR G+I +Q+ RVPC++PG+ + F V++GS YF
Sbjct: 156 PCHFDMSGTALGAMAKPGMADKLRAGGVIRMQYKRVPCKYPGVNIAFRVDQGSNPFYFKT 335
Query: 278 LVEYENGDGDVVQVDLMEKRARRWTPMSQSWGSIWRLDSNHRLQPPFSIRTRTDSGKTLV 457
L+E+E+ DGD+ V L E + WT M+Q WG++WRL++ +RL+ PFS+R DSG+ LV
Sbjct: 336 LIEFEDDDGDLKAVALKEAGSGAWTQMTQDWGALWRLNNGNRLRAPFSLRLTXDSGRKLV 515
Query: 458 ARDV 469
+V
Sbjct: 516 XNNV 527
Score = 29.9 bits (59), Expect(2) = 2e-043
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +2 / +3
Query: 23 SKHAACSGRTETVVITDMN 79
S ++ACSG+ TVVITD++
Sbjct: 75 SSNSACSGKPVTVVITDLS 131
>gb|BQ459308.1|BQ459308 HA01I15r HA Hordeum vulgare subsp. vulgare cDNA clone HA01I15
5-PRIME, mRNA sequence
Length = 396
Score = 109 bits (233), Expect(2) = 4e-043
Identities = 42/63 (66%), Positives = 51/63 (80%)
Frame = +2 / +2
Query: 149 GRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYFAVLVEYENGDGDVVQVDLM 328
G D+LR AGII++QF RVPC++PGL V FHVEEGS Y A+LVEY+NGDGDV Q+D+M
Sbjct: 2 GTRDELRHAGIINMQFKRVPCQYPGLTVTFHVEEGSNPFYMAILVEYDNGDGDVKQLDIM 181
Query: 329 EKR 337
E R
Sbjct: 182 ESR 190
Score = 84.9 bits (179), Expect(2) = 4e-043
Identities = 30/54 (55%), Positives = 40/54 (74%)
Frame = +2 / +2
Query: 347 WTPMSQSWGSIWRLDSNHRLQPPFSIRTRTDSGKTLVARDVIPLNWRPNTFYRS 508
W PM +SWGSIWR+D++H ++ PF +R +SGKTLVA VIP +W+PN Y S
Sbjct: 233 WVPMKESWGSIWRMDAHHPMRGPFWLRVTNESGKTLVADKVIPGDWKPNKTYSS 394
>gb|CV063939.1|CV063939 BNEL94h5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL94h5 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 661
Score = 149 bits (320), Expect(2) = 1e-041
Identities = 59/82 (71%), Positives = 69/82 (84%)
Frame = +2 / +2
Query: 92 VAPYHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYF 271
V+ YHFDLSGTAFG +AK GRND+LR AGII++QF RVPC++PGL V FHVEEGS Y
Sbjct: 371 VSRYHFDLSGTAFGAMAKYGRNDELRHAGIINMQFKRVPCQYPGLTVTFHVEEGSNPFYM 550
Query: 272 AVLVEYENGDGDVVQVDLMEKR 337
A+LVEYENGDGDV Q+D+ME R
Sbjct: 551 AILVEYENGDGDVKQLDIMESR 616
Score = 40.0 bits (81), Expect(2) = 1e-041
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +2 / +2
Query: 23 SKHAACSGRTETVVITDMNYTP 88
S H ACSG +TV+ITDMNY P
Sbjct: 305 SDHPACSGVPKTVIITDMNYDP 370
>gb|BU981055.1|BU981055 HA22I03r HA Hordeum vulgare subsp. vulgare cDNA clone HA22I03
5-PRIME, mRNA sequence
Length = 597
Score = 149 bits (320), Expect(2) = 1e-041
Identities = 59/82 (71%), Positives = 69/82 (84%)
Frame = +2 / +1
Query: 92 VAPYHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYF 271
V+ YHFDLSGTAFG +AK GRND+LR AGII++QF RVPC++PGL V FHVEEGS Y
Sbjct: 325 VSRYHFDLSGTAFGAMAKYGRNDELRHAGIINMQFKRVPCQYPGLTVTFHVEEGSNPFYM 504
Query: 272 AVLVEYENGDGDVVQVDLMEKR 337
A+LVEYENGDGDV Q+D+ME R
Sbjct: 505 AILVEYENGDGDVKQLDIMESR 570
Score = 40.0 bits (81), Expect(2) = 1e-041
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +2 / +1
Query: 23 SKHAACSGRTETVVITDMNYTP 88
S H ACSG +TV+ITDMNY P
Sbjct: 259 SDHPACSGVPKTVIITDMNYDP 324
>gb|BU967134.1|BU967134 HB03G05r BC Hordeum vulgare subsp. vulgare cDNA clone HB03G05
5-PRIME, mRNA sequence
Length = 430
Score = 149 bits (320), Expect(2) = 1e-041
Identities = 59/82 (71%), Positives = 69/82 (84%)
Frame = +2 / +1
Query: 92 VAPYHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYF 271
V+ YHFDLSGTAFG +AK GRND+LR AGII++QF RVPC++PGL V FHVEEGS Y
Sbjct: 127 VSRYHFDLSGTAFGAMAKYGRNDELRHAGIINMQFKRVPCQYPGLTVTFHVEEGSNPFYM 306
Query: 272 AVLVEYENGDGDVVQVDLMEKR 337
A+LVEYENGDGDV Q+D+ME R
Sbjct: 307 AILVEYENGDGDVKQLDIMESR 372
Score = 40.0 bits (81), Expect(2) = 1e-041
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +2 / +1
Query: 23 SKHAACSGRTETVVITDMNYTP 88
S H ACSG +TV+ITDMNY P
Sbjct: 61 SDHPACSGVPKTVIITDMNYDP 126
>gb|BQ458429.1|BQ458429 HA05E07r HA Hordeum vulgare subsp. vulgare cDNA clone HA05E07
5-PRIME, mRNA sequence
Length = 504
Score = 147 bits (315), Expect(2) = 6e-041
Identities = 58/80 (72%), Positives = 68/80 (85%)
Frame = +2 / +2
Query: 92 VAPYHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYF 271
V+ YHFDLSGTAFG +AK GRND+LR AGII++QF RVPC++PGL V FHVEEGS Y
Sbjct: 263 VSRYHFDLSGTAFGAMAKYGRNDELRHAGIINMQFKRVPCQYPGLTVTFHVEEGSNPFYM 442
Query: 272 AVLVEYENGDGDVVQVDLME 331
A+LVEYENGDGDV Q+D+ME
Sbjct: 443 AILVEYENGDGDVKQLDIME 502
Score = 40.0 bits (81), Expect(2) = 6e-041
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +2 / +2
Query: 23 SKHAACSGRTETVVITDMNYTP 88
S H ACSG +TV+ITDMNY P
Sbjct: 197 SDHPACSGVPKTVIITDMNYDP 262
>gb|BI957603.1|BI957603 HVSMEn0010F11f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0010F11f, mRNA sequence
Length = 630
Score = 149 bits (320), Expect(2) = 9e-041
Identities = 61/80 (76%), Positives = 69/80 (86%)
Frame = +2 / +1
Query: 92 VAPYHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYF 271
VA YHFDLSGTAFG +AKPG ++ LR +GIIDIQF RVPCEFPGLKV FHVE+GS VYF
Sbjct: 388 VAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRVPCEFPGLKVTFHVEQGSNPVYF 567
Query: 272 AVLVEYENGDGDVVQVDLME 331
VLVEY +GDG++VQVDLME
Sbjct: 568 PVLVEY*DGDGNLVQVDLME 627
Score = 37.3 bits (75), Expect(2) = 9e-041
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +2 / +1
Query: 35 ACSGRTETVVITDMNYTP 88
+CSG ETVVITDMNY P
Sbjct: 334 SCSGNPETVVITDMNYYP 387
>gb|BI958784.1|BI958784 HVSMEn0016J13f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0016J13f, mRNA sequence
Length = 656
Score = 148 bits (317), Expect(2) = 2e-040
Identities = 60/77 (77%), Positives = 66/77 (85%)
Frame = +2 / +3
Query: 92 VAPYHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYF 271
VA YHFDLSGTAFG +AKPG ++ LR +GIIDIQF RVPCEFPGLKV FHVE+GS VYF
Sbjct: 426 VAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRVPCEFPGLKVTFHVEQGSNPVYF 605
Query: 272 AVLVEYENGDGDVVQVD 322
AVLVEYE+GDGD V VD
Sbjct: 606 AVLVEYEDGDGDXVXVD 656
Score = 100 bits (214), Expect = 5e-021
Identities = 44/61 (72%), Positives = 45/61 (73%)
Frame = -1 / -2
Query: 273 AK*TWVEPSSTWKPTLRPGNSQGTLANWMSMMPARRRSSLRPGLASLPKAVPLRSKW*GA 94
AK T +P STWK TLRPGNS GTL NWMSMMP R SLRPGLA P AVPLRSKW A
Sbjct: 607 AKYTGFDPCSTWKVTLRPGNSHGTLLNWMSMMPECRSFSLRPGLAMAPNAVPLRSKWYLA 428
Query: 93 T 91
T
Sbjct: 427 T 425
Score = 37.3 bits (75), Expect(2) = 2e-040
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +2 / +3
Query: 35 ACSGRTETVVITDMNYTP 88
+CSG ETVVITDMNY P
Sbjct: 372 SCSGNPETVVITDMNYYP 425
>gb|CB881182.1|CB881182 HM09A07w HM Hordeum vulgare subsp. vulgare cDNA clone HM09A07
3-PRIME, mRNA sequence
Length = 680
Score = 120 bits (257), Expect(2) = 4e-040
Identities = 45/96 (46%), Positives = 65/96 (67%)
Frame = +2 / -3
Query: 221 GLKVGFHVEEGSTQVYFAVLVEYENGDGDVVQVDLMEKRARRWTPMSQSWGSIWRLDSNH 400
G KV FHVE+GS+ Y A++V++ GDGDVV VD+ K +W + +SWG++WR+D+
Sbjct: 546 GTKVNFHVEKGSSPNYLALVVKFLQGDGDVVAVDIKPKGKDKWIELKESWGAVWRIDTPD 367
Query: 401 RLQPPFSIRTRTDSGKTLVARDVIPLNWRPNTFYRS 508
+L PFS+R T+ G VA DVIP W+P+T Y +
Sbjct: 366 KLIGPFSVRYTTEGGTKTVAEDVIPEGWKPDTSYET 259
Score = 63.8 bits (133), Expect(2) = 4e-040
Identities = 24/43 (55%), Positives = 32/43 (74%)
Frame = +2 / -3
Query: 92 VAPYHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFP 220
+A YHFDLSG AFG +AK G+ LR AG ++I+F RV C++P
Sbjct: 678 IAAYHFDLSGHAFGTMAKKGQEQKLRDAGEVEIKFRRVKCKYP 550
>gb|CK125696.1|CK125696 BES1824110b08 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010B0810 5-PRIME, mRNA sequence
Length = 638
Score = 79.9 bits (168), Expect(3) = 6e-040
Identities = 33/44 (75%), Positives = 35/44 (79%)
Frame = +2 / +3
Query: 92 VAPYHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPG 223
VAPYHFDLSGTAFGRLAKPG ND LR +GIIDI+F R PG
Sbjct: 390 VAPYHFDLSGTAFGRLAKPGLNDRLRHSGIIDIEFTRGAVGVPG 521
Score = 79.0 bits (166), Expect(3) = 6e-040
Identities = 33/45 (73%), Positives = 36/45 (80%)
Frame = +2 / +1
Query: 203 VPCEFPGLKVGFHVEEGSTQVYFAVLVEYENGDGDVVQVDLMEKR 337
VP EFPGLK+GFHV E S VYFAVLV ++GDGDVVQV LME R
Sbjct: 502 VPWEFPGLKIGFHVXEYSXPVYFAVLVXXQDGDGDVVQVXLMESR 636
Score = 43.2 bits (88), Expect(3) = 6e-040
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = +2 / +3
Query: 26 KHAACSGRTETVVITDMNYTP 88
K +CSGRTETV+ITDMNY P
Sbjct: 327 KDQSCSGRTETVIITDMNYYP 389
>gb|CV060611.1|CV060611 BNEL5B4 Barley EST endosperm library Hordeum vulgare subsp. vulgare
cDNA clone BNEL5B4 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 634
Score = 143 bits (306), Expect(2) = 1e-039
Identities = 57/82 (69%), Positives = 67/82 (81%)
Frame = +2 / +3
Query: 92 VAPYHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYF 271
V+ YHFDLSGTAFG +AK GRND+LR AGII++QF RVPC++PGL V FHVEE S Y
Sbjct: 372 VSRYHFDLSGTAFGAMAKYGRNDELRHAGIINMQFKRVPCQYPGLTVTFHVEEXSNPFYM 551
Query: 272 AVLVEYENGDGDVVQVDLMEKR 337
A+L EYENGDGDV Q+D+ME R
Sbjct: 552 AILGEYENGDGDVKQLDIMESR 617
Score = 40.0 bits (81), Expect(2) = 1e-039
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +2 / +3
Query: 23 SKHAACSGRTETVVITDMNYTP 88
S H ACSG +TV+ITDMNY P
Sbjct: 306 SDHPACSGVPKTVIITDMNYDP 371
>gb|BI960458.1|BI960458 HVSMEn0024K16f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024K16f, mRNA sequence
Length = 677
Score = 144 bits (308), Expect(2) = 4e-039
Identities = 59/79 (74%), Positives = 65/79 (82%)
Frame = +2 / +2
Query: 92 VAPYHFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYF 271
VA YHFDLSGTAFG +AKPG ++ LR +GIIDIQF RVPCEFPGLKV HVE+GS VYF
Sbjct: 440 VAKYHFDLSGTAFGAMAKPGLSEKLRHSGIIDIQFKRVPCEFPGLKVTXHVEQGSNPVYF 619
Query: 272 AVLVEYENGDGDVVQVDLM 328
VLVEY +GD D VQVDLM
Sbjct: 620 XVLVEYXDGDXDXVQVDLM 676
Score = 37.3 bits (75), Expect(2) = 4e-039
Identities = 14/18 (77%), Positives = 15/18 (83%)
Frame = +2 / +2
Query: 35 ACSGRTETVVITDMNYTP 88
+CSG ETVVITDMNY P
Sbjct: 386 SCSGNPETVVITDMNYYP 439
>gb|BQ467895.1|BQ467895 HR01E04r HR Hordeum vulgare subsp. vulgare cDNA clone HR01E04
5-PRIME, mRNA sequence
Length = 540
Score = 160 bits (344), Expect = 6e-039
Identities = 63/95 (66%), Positives = 74/95 (77%)
Frame = +2 / +2
Query: 239 HVEEGSTQVYFAVLVEYENGDGDVVQVDLMEKRARRWTPMSQSWGSIWRLDSNHRLQPPF 418
HV EGS VY AVL+EYE+ DGDV+QVD+ E + W M +SWGSIWR+DSNHRLQ PF
Sbjct: 2 HVVEGSNAVYLAVLIEYEDMDGDVIQVDMKEANSGSWMAMRESWGSIWRMDSNHRLQGPF 181
Query: 419 SIRTRTDSGKTLVARDVIPLNWRPNTFYRSIVQYS 523
S+R +DSGK LVA +VIP NWRPNT YRS VQ+S
Sbjct: 182 SMRITSDSGKKLVANNVIPANWRPNTDYRSFVQFS 286
>gb|BF257093.3|BF257093 HVSMEf0011N11f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0011N11f, mRNA sequence
Length = 816
Score = 144 bits (308), Expect(3) = 1e-038
Identities = 52/98 (53%), Positives = 73/98 (74%)
Frame = +2 / +2
Query: 104 HFDLSGTAFGRLAKPGRNDDLRRAGIIDIQFARVPCEFPGLKVGFHVEEGSTQVYFAVLV 283
HFD+SGT+ G +AKPG D LR +GI+ IQ+ RVPC++PG+ + F V++GS Y VL+
Sbjct: 218 HFDMSGTSMGAMAKPGMADKLRASGIVKIQYKRVPCKYPGMNIAFKVDQGSNPFYLEVLI 397
Query: 284 EYENGDGDVVQVDLMEKRARRWTPMSQSWGSIWRLDSN 397
E+E+ DGD+ VDLME WTPM Q+WG+++RL+SN
Sbjct: 398 EFEDDDGDLNTVDLMEANCGTWTPMVQNWGALYRLNSN 511
Score = 28.1 bits (55), Expect(3) = 1e-038
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +2 / +1
Query: 461 RDVIPLNWRPNTFYRSIVQY 520
++V P++W+ YRS+V Y
Sbjct: 583 KNVFPVSWKAGATYRSLVNY 642
Score = 25.8 bits (50), Expect(3) = 1e-038
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +2 / +2
Query: 35 ACSGRTETVVITD 73
ACSG+ TVVITD
Sbjct: 140 ACSGQPATVVITD 178
>gb|BU986289.1|BU986289 HF11E17r HF Hordeum vulgare subsp. vulgare cDNA clone HF11E17
5-PRIME, mRNA sequence
Length = 538
Score = 159 bits (342), Expect = 1e-038
Identities = 64/84 (76%), Positives = 70/84 (83%)
Frame = +2 / +2
Query: 272 AVLVEYENGDGDVVQVDLMEKRARRWTPMSQSWGSIWRLDSNHRLQPPFSIRTRTDSGKT 451
AVLVEYE+GDGDVVQVDLME + WTPM +SWGSIWRLDS HRLQ PFS+R +SGKT
Sbjct: 11 AVLVEYEDGDGDVVQVDLMEANSGTWTPMRESWGSIWRLDSGHRLQAPFSMRITNESGKT 190
Query: 452 LVARDVIPLNWRPNTFYRSIVQYS 523
LVA VIP NW P+TFYRSIVQYS
Sbjct: 191 LVADKVIPANWAPSTFYRSIVQYS 262
>gb|BG416780.1|BG416780 HVSMEk0014H23f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0014H23f, mRNA sequence
Length = 696
Score = 124 bits (266), Expect(2) = 2e-038
Identities = 47/60 (78%), Positives = 51/60 (85%)
Frame = +2 / +1
Query: 344 RWTPMSQSWGSIWRLDSNHRLQPPFSIRTRTDSGKTLVARDVIPLNWRPNTFYRSIVQYS 523
+WT M +SWGS+WRLDSNHRLQ PFSIR R +SGKTLVA VIP NWRPNTFYRS VQYS
Sbjct: 91 KWTRMRESWGSVWRLDSNHRLQAPFSIRIRNESGKTLVANKVIPANWRPNTFYRSFVQYS 270
Score = 54.2 bits (112), Expect(2) = 2e-038
Identities = 22/25 (88%), Positives = 23/25 (92%)
Frame = +2 / +1
Query: 263 VYFAVLVEYENGDGDVVQVDLMEKR 337
VYF VLVEYE+GDGDVVQVDLME R
Sbjct: 1 VYFLVLVEYEDGDGDVVQVDLMESR 75
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 205,617,829
Number of Sequences: 312970
Number of extensions: 2869098
Number of successful extensions: 53886
Number of sequences better than 1.0e-020: 162
length of database: 58,378,179
effective HSP length: 51
effective length of database: 42,416,709
effective search space used: 6574589895
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)