TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2835489.2.1
(885 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV913828.1|AV913828 AV913828 K. Sato unpublished cDNA li... 329 1e-089
gb|AV921443.1|AV921443 AV921443 K. Sato unpublished cDNA li... 259 2e-075
gb|AF102868.1| Hordeum vulgare subsp. vulgare beta-D-glucan... 166 8e-069
gb|CA006048.1|CA006048 HU05G22u HU Hordeum vulgare subsp. v... 234 4e-061
gb|U46003.1|HVU46003 Hordeum vulgare beta-D-glucan exohydro... 148 2e-060
gb|CB883402.1|CB883402 HQ02C08w HQ Hordeum vulgare subsp. v... 219 2e-056
gb|AV925468.1|AV925468 AV925468 K. Sato unpublished cDNA li... 148 3e-052
gb|CA015249.1|CA015249 HT13L19r HT Hordeum vulgare subsp. v... 115 2e-050
gb|AV913362.1|AV913362 AV913362 K. Sato unpublished cDNA li... 100 3e-049
gb|BF257182.2|BF257182 HVSMEf0012B20f Hordeum vulgare seedl... 148 3e-049
gb|BU977331.1|BU977331 HA11D20r HA Hordeum vulgare subsp. v... 148 9e-047
gb|AV914506.1|AV914506 AV914506 K. Sato unpublished cDNA li... 105 3e-043
gb|AL504655.1|AL504655 AL504655 Hordeum vulgare Barke roots... 148 2e-040
gb|BQ469930.1|BQ469930 HX01E12T HX Hordeum vulgare subsp. v... 159 2e-038
gb|BU973151.1|BU973151 HB23O18r BC Hordeum vulgare subsp. v... 115 2e-038
gb|BM098044.2|BM098044 EBpi03_SQ002_G06_R pistil, 4 DPA, no... 127 1e-037
gb|BI947544.1|BI947544 HVSMEl0005N11f Hordeum vulgare spike... 100 1e-037
gb|BU996833.1|BU996833 HM14O21r HM Hordeum vulgare subsp. v... 112 6e-037
gb|BE411093.1|BE411093 ISC002.C07F990406 ITEC ISC Barley Le... 148 5e-035
gb|AV918661.1|AV918661 AV918661 K. Sato unpublished cDNA li... 109 1e-034
gb|AV833400.1|AV833400 AV833400 K. Sato unpublished cDNA li... 113 1e-033
gb|BG416639.1|BG416639 HVSMEk0013O04f Hordeum vulgare testa... 88 1e-031
gb|AV919570.1|AV919570 AV919570 K. Sato unpublished cDNA li... 109 1e-030
gb|AV920100.1|AV920100 AV920100 K. Sato unpublished cDNA li... 109 2e-030
gb|CA032659.1|CA032659 HX13N01r HX Hordeum vulgare subsp. v... 131 5e-030
gb|BU995937.1|BU995937 HM11N11r HM Hordeum vulgare subsp. v... 117 3e-029
gb|CA028903.1|CA028903 HZ63J10r HZ Hordeum vulgare subsp. v... 88 1e-027
gb|CA022582.1|CA022582 HZ43L07r HZ Hordeum vulgare subsp. v... 121 5e-027
gb|CA016117.1|CA016117 HV10I20u HV Hordeum vulgare subsp. v... 119 3e-026
gb|AV930613.1|AV930613 AV930613 K. Sato unpublished cDNA li... 109 7e-026
gb|BI951410.1|BI951410 HVSMEl0025N13f Hordeum vulgare spike... 116 7e-026
gb|CB882092.1|CB882092 HM11N11w HM Hordeum vulgare subsp. v... 117 9e-026
gb|AV911128.1|AV911128 AV911128 K. Sato unpublished cDNA li... 110 1e-025
gb|AL503553.1|AL503553 AL503553 Hordeum vulgare Barke roots... 92 1e-025
gb|BF627275.3|BF627275 HVSMEb0004G19f Hordeum vulgare seedl... 109 3e-025
gb|AV909243.1|AV909243 AV909243 K. Sato unpublished cDNA li... 110 5e-025
gb|BQ468807.1|BQ468807 HM02G11r HM Hordeum vulgare subsp. v... 114 6e-025
gb|BQ661201.1|BQ661201 HM02G11u HM Hordeum vulgare subsp. v... 114 6e-025
gb|CB881387.1|CB881387 HM09K13w HM Hordeum vulgare subsp. v... 114 6e-025
gb|CA000004.1|CA000004 HS16F17u HS Hordeum vulgare subsp. v... 114 8e-025
gb|BU999923.1|BU999923 HS16P05u HS Hordeum vulgare subsp. v... 113 1e-024
gb|BQ663194.1|BQ663194 HU01E02w HU Hordeum vulgare subsp. v... 110 1e-023
gb|AL502756.1|AL502756 AL502756 Hordeum vulgare Barke roots... 109 3e-023
gb|BQ657885.1|BQ657885 HA06J20u HA Hordeum vulgare subsp. v... 109 3e-023
gb|BQ662134.1|BQ662134 HR01L02u HR Hordeum vulgare subsp. v... 109 3e-023
gb|BQ663930.1|BQ663930 HU04K15u HU Hordeum vulgare subsp. v... 109 3e-023
gb|BM374002.2|BM374002 EBma03_SQ003_F17_R maternal, 8 DPA, ... 109 3e-023
gb|BU976239.1|BU976239 HA03G04u HA Hordeum vulgare subsp. v... 109 3e-023
gb|BU977332.1|BU977332 HA11D20u HA Hordeum vulgare subsp. v... 109 3e-023
gb|BU983489.1|BU983489 HA29O13r HA Hordeum vulgare subsp. v... 109 3e-023
gb|BU997464.1|BU997464 HI08B05r HI Hordeum vulgare subsp. v... 109 3e-023
gb|BJ467252.1|BJ467252 BJ467252 K. Sato unpublished cDNA li... 109 3e-023
gb|CB858339.1|CB858339 HI06K15w HI Hordeum vulgare subsp. v... 109 3e-023
gb|BM376573.1|BM376573 EBem05_SQ002_J19_R embryo, 14 DPA, n... 105 3e-023
gb|BQ660173.1|BQ660173 HI01E18w HI Hordeum vulgare subsp. v... 108 4e-023
gb|AL510704.1|AL510704 AL510704 Hordeum vulgare Barke devel... 107 7e-023
gb|BM101478.2|BM101478 EBpi01_SQ003_P14_R pistil, 1 DPA, no... 107 7e-023
gb|BI956426.1|BI956426 HVSMEn0003E13f Hordeum vulgare rachi... 106 2e-022
gb|AL502558.1|AL502558 AL502558 Hordeum vulgare Barke roots... 105 5e-022
gb|BQ660249.1|BQ660249 HI01K09w HI Hordeum vulgare subsp. v... 105 5e-022
gb|BM100567.2|BM100567 EBma01_SQ005_J17_R maternal, 4 DPA, ... 104 9e-022
gb|BM098018.2|BM098018 EBpi03_SQ002_F03_R pistil, 4 DPA, no... 102 2e-021
gb|BQ468423.1|BQ468423 HM01D10T HM Hordeum vulgare subsp. v... 79 6e-021
gb|AV917377.1|AV917377 AV917377 K. Sato unpublished cDNA li... 100 8e-021
gb|BQ765660.1|BQ765660 EBro03_SQ007_F19_R root, 3 week, wat... 100 8e-021
>gb|AV913828.1|AV913828 AV913828 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23h03 5', mRNA sequence
Length = 617
Score = 329 bits (713), Expect = 1e-089
Identities = 136/166 (81%), Positives = 148/166 (89%)
Frame = -3 / +2
Query: 883 ESRTRRILRVKFISGVFEHPFSDQSLLDIVGCKEHRLLAREAVRKSLVLLKNGKDQNKPF 704
+ RILRVKFISGVFEHPFSD +LLD++GCKEHR LAREAVRKSLVLLKNGK+Q +PF
Sbjct: 107 DDAVERILRVKFISGVFEHPFSDPTLLDVIGCKEHRQLAREAVRKSLVLLKNGKNQKEPF 286
Query: 703 LPLAKDAKRILVAGTHADDIGYQCGGWTIAWHGDSGKITLGTSILEAIQELVGVQTEVVY 524
LPLAK+AKRILV GTHAD+IGYQCGGWTIAWHGDSGKIT GTSILEAIQ + V+TEVVY
Sbjct: 287 LPLAKNAKRILVTGTHADNIGYQCGGWTIAWHGDSGKITPGTSILEAIQRTLQVETEVVY 466
Query: 523 EKCPTEAMIETGGFSYAVVVVGEVPYAEWTGDRTDLSIPFNGSDLI 386
E+CPTEA IE FSYA+VVVGEVPYAE GDRTDLSIPFNGSDLI
Sbjct: 467 EECPTEATIEEENFSYAIVVVGEVPYAEGLGDRTDLSIPFNGSDLI 604
Score = 282 bits (610), Expect = 2e-075
Identities = 130/167 (77%), Positives = 134/167 (80%)
Frame = +3 / -3
Query: 384 MIRSEPLNGILRSVLSPVHSAYGTSPTTTTA*ENPPVSIIASVGHFSYTTSVCTPTNSCM 563
+IRSEPLNGILRSVLSP SA GTSPTTT A*E S++ASVGH SYTTSV T CM
Sbjct: 606 VIRSEPLNGILRSVLSPNPSA*GTSPTTTIA*EKFSSSMVASVGHSSYTTSVSTCKVLCM 427
Query: 564 ASNMLVPRVIFPLSPCHAIVQPPH*YPISSACVPATSILFASLANGRNGLF*SLPFFRST 743
ASNMLVP VIFPLSPCHAIV PPH*YPI SACVP TSILFA LA GRNG F* LPFFRST
Sbjct: 426 ASNMLVPGVIFPLSPCHAIVHPPH*YPILSACVPVTSILFAFLAKGRNGSF*FLPFFRST 247
Query: 744 KDLRTASRASNRCSLQPTMSSRDWSENGCSNTPEINLTLRIRLVRDS 884
KD RTASRAS RCSLQP SSR SENGCS TPE+NLTLRIR S
Sbjct: 246 KDFRTASRAS*RCSLQPITSSRVGSENGCSKTPEMNLTLRIRSTASS 106
Score = 227 bits (490), Expect = 7e-059
Identities = 99/157 (63%), Positives = 116/157 (73%)
Frame = -2 / +1
Query: 866 NSEG*VYFWSV*ASIFRPISTGHSWL*GTSVTSA*GCSQVFGTSEKWQGSE*AIPSIGQR 687
+S+ *V+FWS *ASIFR ST +WL G S S *GCS+VFGTSEKWQ S+ IPS+ Q+
Sbjct: 124 DSKS*VHFWSF*ASIFRSNST*RNWLQGASSAST*GCSKVFGTSEKWQESKGTIPSLSQK 303
Query: 686 CKKNTGCRNTC**YWISMWWLDDSMAWRQWKNNSWYEHIGGHTRISGSAN*SCV*EMPNR 507
CKKNT R+TC* YWISMWW+DDS+A RQWK+NSWY+HI GHT+ S N SCV* MPNR
Sbjct: 304 CKKNTCHRDTC*QYWISMWWVDDSVARRQWKDNSWYKHIRGHTKNFASGNGSCV*RMPNR 483
Query: 506 SYD*NWGVFLCGGGCWRGSICRMDRR*N*P*YSV*WL 396
SY * +FLC GS+CR *N P*YS+*WL
Sbjct: 484 SYH*RRKLFLCNCCSR*GSLCRRVGG*NRP*YSI*WL 594
Score = 226 bits (487), Expect = 2e-058
Identities = 103/156 (66%), Positives = 117/156 (75%)
Frame = +2 / -2
Query: 398 AIKRNTKVSSISCPFGIWNLSNNHHRIGKPPSFNHSFGWAFLIHNFSLHSH*FLYGLQYA 577
AIK NTKV SI PF I NL+ ++ IGK FN SF WAF IHNF H LYGL YA
Sbjct: 592 AIKWNTKVGSIPQPFCIGNLTYYNNCIGKVFFFNGSFCWAFFIHNFRFHLQSSLYGL*YA 413
Query: 578 RTKSYFSTVSMPCYRPATTLISNIISMCSCNQYSFCIFGQWKEWLILILAIFQKYQRLAN 757
T+SY STVS+P YRP TTLISNI+SMC C++YSFCIFG KEW +LILAIFQKYQRL+N
Sbjct: 412 CTRSYLSTVSVPRYRPPTTLISNIVSMCPCDKYSFCIFG*GKEWFLLILAIFQKYQRLSN 233
Query: 758 SLTR**PMFLTTNYVQ*RLV*KWMLKHSRNKLNPQN 865
SLT * M L TNYV+* +*KWMLK+SRN+LN N
Sbjct: 232 SLTC*LTMLLATNYVK*SWI*KWMLKNSRNELNS*N 125
Score = 213 bits (460), Expect = 1e-054
Identities = 98/153 (64%), Positives = 104/153 (67%)
Frame = +1 / -1
Query: 397 SH*TEY*GQFYLLSIRHMEPLQQPPPHRKTPQFQS*LRLGISHTQLQFALPLILVWPPIC 576
SH* EY*G+FY ++ H EP HRK+ Q *L LGI HTQL F L VWP IC
Sbjct: 593 SH*MEY*GRFYPPTLLHREPHLLQQLHRKSFLLQW*LLLGILHTQLPFPLAKFFVWPLIC 414
Query: 577 SYQELFFHCLHAMLSSSHHIDIQYHQHVFLQPVFFLHLWPMEGMAYSDPCHFSEVPKTCE 756
YQEL FHCL A LSS+HHIDIQY QHV L VFFLH W EGM D CHFSEVPKT E
Sbjct: 413 LYQELSFHCLRATLSSTHHIDIQYCQHVSL*QVFFLHFWLREGMVPFDSCHFSEVPKTFE 234
Query: 757 QPHALVTDVPYNQLCPVEIGLKMDAQTLQK*T* 855
QPH L D P NQL VE+ LKMDAQ LQK*T*
Sbjct: 233 QPHVLADDAPCNQLRQVELDLKMDAQKLQK*T* 135
Score = 204 bits (439), Expect = 8e-052
Identities = 104/156 (66%), Positives = 112/156 (71%)
Frame = -1 / +3
Query: 864 F*GLSLFLECLSIHFQTNLYWT*LVVRNIGY*RVRLFASLWYF*KMARIRISHSFHWPKM 685
F* LS FLE LSIHFQ LY T*LV R+I * VRLF SLWYF*KMARI+ +HSF PKM
Sbjct: 126 F*ELSSFLEFLSIHFQIQLYLT*LVARSIVS*HVRLFESLWYF*KMARIKRNHSFP*PKM 305
Query: 684 QKEYWLQEHMLMILDINVVAGR*HGMETVEK*LLVRAYWRPYKN*WECKLKLCMRNAQPK 505
QKEY Q HML ILDINVV GR* G ETVE+*LLV+AY RPYK + K KLCM+NAQ K
Sbjct: 306 QKEYLSQGHMLTILDINVVGGR*RGTETVER*LLVQAY*RPYKELCKWKRKLCMKNAQQK 485
Query: 504 L*LKLGGFPMRWWLLERFHMPNGQEIELTLVFRLMA 397
L LK FPM+ RF M G IE TLVF LMA
Sbjct: 486 LPLKKKTFPMQLL**VRFPMQKGWGIEPTLVFHLMA 593
>gb|AV921443.1|AV921443 AV921443 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23h03 3', mRNA sequence
Length = 612
Score = 259 bits (561), Expect(3) = 2e-075
Identities = 106/131 (80%), Positives = 115/131 (87%)
Frame = -3 / -3
Query: 508 EAMIETGGFSYAVVVVGEVPYAEWTGDRTDLSIPFNGSDLIIRVASKIPTLVIVISGRPL 329
+A IE FSYA+VVVGEVPYAE GDRTDLSIPFNGSDLI RVA K+PTLVIVISGRPL
Sbjct: 517 KATIEEENFSYAIVVVGEVPYAEGLGDRTDLSIPFNGSDLITRVARKVPTLVIVISGRPL 338
Query: 328 IIESQVLEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTLPVTWCKSVDQLPIDAGDSNY 149
+IE QVLEK++ALV AWLPGSEGMG+TDCLFGDHDFVGTLPVTW +S DQLPID +NY
Sbjct: 337 VIEPQVLEKVDALVVAWLPGSEGMGVTDCLFGDHDFVGTLPVTWFRSDDQLPIDIRGANY 158
Query: 148 DPLFPVGYGLK 116
DPLFP GYGLK
Sbjct: 157 DPLFPFGYGLK 125
Score = 208 bits (449), Expect(3) = 9e-059
Identities = 96/129 (74%), Positives = 106/129 (82%)
Frame = +3 / +3
Query: 120 SPYPTGNSGS*LESPASIGN*STDLHHVTGNVPTKS*SPKRQSVIPMPSLPGSQAATRAS 299
SPYP GN+GS*L SIG+*S+DL+ VTGNVPTKS SPKRQSV PMPSLPG+QA TRAS
Sbjct: 129 SPYPKGNNGS*LAPLISIGS*SSDLNQVTGNVPTKSWSPKRQSVTPMPSLPGNQATTRAS 308
Query: 300 IFSKTCDSIINGLPDITITRVGILLATRMIRSEPLNGILRSVLSPVHSAYGTSPTTTTA* 479
FS+TC SI GLP+ITITRVG LATR+IRSEPLNGILRSVLSP SA GTSPTTT A*
Sbjct: 309 TFSRTCGSITKGLPEITITRVGTFLATRVIRSEPLNGILRSVLSPNPSA*GTSPTTTIA* 488
Query: 480 ENPPVSIIA 506
E S++A
Sbjct: 489 EKFSSSMVA 515
Score = 154 bits (330), Expect(2) = 1e-041
Identities = 72/135 (53%), Positives = 85/135 (62%)
Frame = -2 / -2
Query: 521 EMPNRSYD*NWGVFLCGGGCWRGSICRMDRR*N*P*YSV*WL*PYHPCCK*NPYPSDCYI 342
E P SY * +FLC GS+CR *N P*YS+*WL + CC +PYPSDCY
Sbjct: 530 ECPTESYH*RRKLFLCNCCSR*GSLCRRVGG*NRP*YSI*WLRSNYSCC*KSPYPSDCYF 351
Query: 341 WKAINY*VTSFGKDRSSSRCLAAWK*GHGNYRLPLWRS*FCGHIACDMV*VC*SIAYRCW 162
WK + Y* TS + R SS CL AWK*GHG+ LPLWR *FC H+A ++V*+ S AYR
Sbjct: 350 WKTLGY*ATSS*EGRCSSCCLVAWK*GHGSD*LPLWRP*FCRHVASNLV*IRRSTAYRY* 171
Query: 161 RL*L*PAIPCWIWAK 117
R *L I WIWA+
Sbjct: 170 RC*LRSIISFWIWAQ 126
Score = 139 bits (298), Expect(3) = 4e-035
Identities = 71/131 (54%), Positives = 88/131 (67%)
Frame = +2 / +2
Query: 116 F*PISNRE*RVIVRVSSIYRQLINRLTPCHRQCAHKIMISKEAIGNSHALTSRQPGSD*S 295
F PIS R+* ++V S+IYRQLI P + Q A+KIM+SKEAI +SHALTSRQP ++*S
Sbjct: 125 FEPISKRK*WIVVSTSNIYRQLIV*SKPSYWQRAYKIMVSKEAISHSHALTSRQPSNN*S 304
Query: 296 FYLFQXXXXXXXWPSRYNNH*GRDFTCNTDDKVRAIKRNTKVSSISCPFGIWNLSNNHHR 475
YL + SR NNH*GRDF+ NT + + AIK NTKV SI PF I NL+ ++
Sbjct: 305 IYLLKNLWLNNQGSSRNNNH*GRDFSSNTSN*I*AIKWNTKVGSIPQPFCIGNLTYYNNC 484
Query: 476 IGKPPSFNHSF 508
IGK FN SF
Sbjct: 485 IGKVFFFNGSF 517
Score = 128 bits (274), Expect = 4e-029
Identities = 70/134 (52%), Positives = 84/134 (62%)
Frame = +1 / +1
Query: 121 AHIQQGIAGHS*SLQHL*AIDQQTYTMSQAMCPQNHDLQRGNR*FPCPHFQAARQRLELL 300
AHIQ+ I S* L +L*A+D+ T A C QNH LQRGN+ PCPHFQA +Q+LE L
Sbjct: 130 AHIQKEIMDRS*HL*YL*AVDRLI*TKLLATCLQNHGLQRGNQSLPCPHFQATKQQLEHL 309
Query: 301 SFPKLVTQ*LMAFQI*QSLG*GFYLQHG**GQSH*TEY*GQFYLLSIRHMEPLQQPPPHR 480
+LV Q* FQ *QSLG*G + QH * SH* EY*G+FY ++ H EP HR
Sbjct: 310 PSQELVAQ*PRVFQK*QSLG*GLF*QHE*LDLSH*MEY*GRFYPPTLLHREPHLLQQLHR 489
Query: 481 KTPQFQS*LRLGIS 522
K+ Q *L +G S
Sbjct: 490 KSFLLQW*LSVGHS 531
Score = 90.4 bits (191), Expect(3) = 3e-025
Identities = 45/67 (67%), Positives = 48/67 (71%)
Frame = -1 / -1
Query: 321 SHKFWKR*KL*SLPGCLEVRAWELPIASLEIMILWAHCL*HGVSLLINCL*MLETLTMTR 142
SHKF +R* L* L GCLEVRAWE IASLE MIL A C * G+ INCL*+LE LT
Sbjct: 330 SHKFLRR*ML*LLLGCLEVRAWE*LIASLETMIL*ARCQ*LGLDQTINCL*ILEVLTTIH 151
Query: 141 YSLLDMG 121
Y LLDMG
Sbjct: 150 YFLLDMG 130
Score = 39.6 bits (80), Expect(3) = 3e-025
Identities = 27/51 (52%), Positives = 28/51 (54%)
Frame = -1 / -1
Query: 507 KL*LKLGGFPMRWWLLERFHMPNGQEIELTLVFRLMALTLSSVLQVKSLP* 355
KL LK FPM+ RF M G IE TLVF LMA VL KSLP*
Sbjct: 516 KLPLKKKTFPMQLL**VRFPMQKGWGIEPTLVFHLMAQI*LLVLLEKSLP* 364
Score = 35.9 bits (72), Expect(2) = 1e-041
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = -3 / -1
Query: 601 SGKITLGTSILEAIQELVGVQTEVVYEKCPTEAM 500
S KIT GTSILEAIQ + V+TE + P +
Sbjct: 612 SXKITXGTSILEAIQRTLQVETESCV*RMPNRKL 511
Score = 35.4 bits (71), Expect(3) = 2e-075
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -2 / -3
Query: 596 KNNSWYEHIGGHTRISGSAN 537
K+NSWY+HI GHT+ S N
Sbjct: 607 KDNSWYKHIRGHTKNFASGN 548
Score = 32.2 bits (64), Expect(3) = 9e-059
Identities = 15/21 (71%), Positives = 15/21 (71%)
Frame = +3 / +2
Query: 534 SVCTPTNSCMASNMLVPRVIF 596
SV T CMASNMLVP VIF
Sbjct: 545 SVSTCKVLCMASNMLVPXVIF 607
Score = 28.6 bits (56), Expect(3) = 4e-035
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1 / +3
Query: 538 FALPLILVWPPICSYQELFFH 600
F L VWP IC Y EL H
Sbjct: 549 FPLAKFFVWPLICLYXELSXH 611
Score = 27.2 bits (53), Expect(3) = 2e-075
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -3 / -2
Query: 559 QELVGVQTEVVYEKCPTEA 503
+EL + +VVYE+CPTE+
Sbjct: 569 KELCKWKRKVVYEECPTES 513
Score = 25.4 bits (49), Expect(3) = 9e-059
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +2 / +3
Query: 503 SFGWAFLIHNF 535
+F WAF IHNF
Sbjct: 513 AFCWAFFIHNF 545
Score = 23.1 bits (44), Expect(3) = 3e-025
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -1 / -3
Query: 534 KLCMRNAQPK 505
KLCM+NAQ K
Sbjct: 544 KLCMKNAQQK 515
Score = 21.7 bits (41), Expect(3) = 4e-035
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +3 / +1
Query: 507 SVGHFSYTT 533
SVGH SYTT
Sbjct: 517 SVGHSSYTT 543
>gb|AF102868.1| Hordeum vulgare subsp. vulgare beta-D-glucan exohydrolase isoenzyme
ExoI mRNA, complete cds
Length = 2161
Score = 166 bits (356), Expect(2) = 8e-069
Identities = 67/152 (44%), Positives = 97/152 (63%)
Frame = -3 / +2
Query: 775 LLAREAVRKSLVLLKNGKDQNKPFLPLAKDAKRILVAGTHADDIGYQCGGWTIAWHGDSG 596
L A + ++L + P LPL K A +ILVAG+HAD++GYQCGGWTI W GD+G
Sbjct: 1232 LAREAARKSLVLLKNGKTSTDAPLLPLPKKAPKILVAGSHADNLGYQCGGWTIEWQGDTG 1411
Query: 595 KITLGTSILEAIQELVGVQTEVVYEKCPTEAMIETGGFSYAVVVVGEVPYAEWTGDRTDL 416
+ T+GT+ILEA++ V T VV+ + P +++GGFSYA+V VGE PY E GD +L
Sbjct: 1412 RTTVGTTILEAVKAAVDPSTVVVFAENPDAEFVKSGGFSYAIVAVGEHPYTETKGDNLNL 1591
Query: 415 SIPFNGSDLIIRVASKIPTLVIVISGRPLIIE 320
+IP G + V + ++ISGRP++++
Sbjct: 1592 TIPEPGLSTVQAVCGGVRCATVLISGRPVVVQ 1687
Score = 115 bits (245), Expect(2) = 8e-069
Identities = 44/70 (62%), Positives = 54/70 (77%)
Frame = -3 / +2
Query: 328 IIESQVLEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTLPVTWCKSVDQLPIDAGDSNY 149
++ +L +ALVAAWLPGSEG G+TD LFGD F G LP TW KSVDQLP++ GD++Y
Sbjct: 1676 VVVQPLLAASDALVAAWLPGSEGQGVTDALFGDFGFTGRLPRTWFKSVDQLPMNVGDAHY 1855
Query: 148 DPLFPVGYGL 119
DPLF +GYGL
Sbjct: 1856 DPLFRLGYGL 1885
Score = 110 bits (235), Expect(3) = 5e-050
Identities = 52/104 (50%), Positives = 70/104 (67%)
Frame = +3 / -2
Query: 399 PLNGILRSVLSPVHSAYGTSPTTTTA*ENPPVSIIASVGHFSYTTSVCTPTNSCMASNML 578
P +G++R LSP+ S YG SPT T A*E PP+ ++ G + TT+V T + AS M+
Sbjct: 1608 PGSGMVRFRLSPLVSVYGCSPTATMA*EKPPLLTNSASGFSANTTTVDGSTAAFTASRMV 1429
Query: 579 VPRVIFPLSPCHAIVQPPH*YPISSACVPATSILFASLANGRNG 710
VP V+ P+SPCH++VQPPH P SA +PAT IL A L +GR+G
Sbjct: 1428 VPTVVRPVSPCHSMVQPPHW*PRLSAWLPATRILGAFLGSGRSG 1297
Score = 75.3 bits (158), Expect(3) = 5e-050
Identities = 34/62 (54%), Positives = 40/62 (64%)
Frame = +3 / -2
Query: 114 IFSPYPTGNSGS*LESPASIGN*STDLHHVTGNVPTKS*SPKRQSVIPMPSLPGSQAATR 293
+ PYP+ SGS* SP IG+ STDL+HV G++P SP SV P PS PGS AAT
Sbjct: 1890 VVRPYPSRKSGS*CASPTFIGSWSTDLNHVRGSLPVNPKSPNSASVTPCPSEPGSHAATS 1711
Query: 294 AS 299
AS
Sbjct: 1710 AS 1705
Score = 51.0 bits (105), Expect(3) = 5e-050
Identities = 25/54 (46%), Positives = 30/54 (55%)
Frame = +3 / -2
Query: 723 LPFFRSTKDLRTASRASNRCSLQPTMSSRDWSENGCSNTPEINLTLRIRLVRDS 884
LPFF ST D AS A + CS P+ S+ S G S P +NLT RIR+ S
Sbjct: 1281 LPFFSSTSDFLAASLAKSLCSCFPSCSAMAGSA*GFSKRPMVNLTRRIRVTASS 1120
>gb|CA006048.1|CA006048 HU05G22u HU Hordeum vulgare subsp. vulgare cDNA clone HU05G22
3-PRIME, mRNA sequence
Length = 547
Score = 234 bits (506), Expect = 4e-061
Identities = 95/118 (80%), Positives = 105/118 (88%)
Frame = -3 / -1
Query: 421 DLSIPFNGSDLIIRVASKIPTLVIVISGRPLIIESQVLEKIEALVAAWLPGSEGMGITDC 242
DLSIPFNGSDLI RVASK+PTLVIV+SGRPL+IE QVLEKI+ALVAAWLPGSEGMGITDC
Sbjct: 547 DLSIPFNGSDLITRVASKVPTLVIVVSGRPLVIEPQVLEKIDALVAAWLPGSEGMGITDC 368
Query: 241 LFGDHDFVGTLPVTWCKSVDQLPIDAGDSNYDPLFPVGYGLKMFRSDNDST*LYYLLG 68
LFGDHDFVGTLPVTW +S DQLPI+ GD+NYDPLFP GYGLKMF+S D * ++ G
Sbjct: 367 LFGDHDFVGTLPVTWFRSADQLPINVGDANYDPLFPFGYGLKMFKSGEDLA*PHH*FG 194
Score = 214 bits (462), Expect = 5e-055
Identities = 95/117 (81%), Positives = 101/117 (86%)
Frame = +3 / +3
Query: 69 PNK**SYVESLSLRNIFSPYPTGNSGS*LESPASIGN*STDLHHVTGNVPTKS*SPKRQS 248
PN+** Y +S L NIF+PYP GN GS*L SP IGN*S DL+HVTGNVPTKS*SPKRQS
Sbjct: 195 PNQ**GYAKSSPLLNIFNPYPKGNKGS*LASPTFIGN*SADLNHVTGNVPTKS*SPKRQS 374
Query: 249 VIPMPSLPGSQAATRASIFSKTCDSIINGLPDITITRVGILLATRMIRSEPLNGILR 419
VIPMPSLPGSQAATRASIFS+TC SI GLPD TITRVG LLATR+IRSEPLNGILR
Sbjct: 375 VIPMPSLPGSQAATRASIFSRTCGSITKGLPDTTITRVGTLLATRVIRSEPLNGILR 545
Score = 187 bits (402), Expect = 1e-046
Identities = 78/112 (69%), Positives = 87/112 (77%)
Frame = -2 / -3
Query: 419 P*YSV*WL*PYHPCCK*NPYPSDCYIWKAINY*VTSFGKDRSSSRCLAAWK*GHGNYRLP 240
P*Y +*W P + CC *+PY SDC IWKA Y* TS GKDR SS CLA K*GHGNYRLP
Sbjct: 545 P*YPI*WFRPDYSCC**SPYSSDCCIWKAFGY*ATSSGKDRCSSCCLATRK*GHGNYRLP 366
Query: 239 LWRS*FCGHIACDMV*VC*SIAYRCWRL*L*PAIPCWIWAKNVSKR**FNIT 84
LWRS*FCG+I C++V*VC*SIAY+CWR *L* IP WIW +NV K * F+IT
Sbjct: 365 LWRS*FCGYITCNVV*VC*SIAYKCWRC*L*SLIPFWIWVENVQKW*RFSIT 210
Score = 170 bits (366), Expect = 9e-042
Identities = 81/116 (69%), Positives = 89/116 (76%)
Frame = +1 / +1
Query: 73 INNKVMLNHYRFETFLAHIQQGIAGHS*SLQHL*AIDQQTYTMSQAMCPQNHDLQRGNR* 252
IN++VMLN + F TF HIQ+GI HS* LQHL*AIDQQT T Q M PQNHDLQRGNR*
Sbjct: 199 INDEVMLNLHHF*TFSTHIQKGIRDHS*HLQHL*AIDQQT*TTLQVMYPQNHDLQRGNR* 378
Query: 253 FPCPHFQAARQRLELLSFPKLVTQ*LMAFQI*QSLG*GFYLQHG**GQSH*TEY*G 420
FPCPHF+ ARQ+LE LSFP+LV Q* AFQI QSL *G Y QH * G +H* Y*G
Sbjct: 379 FPCPHFRVARQQLEHLSFPELVAQ*PKAFQIQQSLE*GLY*QHE*SGLNH*MGY*G 546
Score = 147 bits (316), Expect = 7e-035
Identities = 68/104 (65%), Positives = 78/104 (75%)
Frame = +2 / +2
Query: 110 KHF*PISNRE*RVIVRVSSIYRQLINRLTPCHRQCAHKIMISKEAIGNSHALTSRQPGSD 289
+HF PIS RE* +IV +S+IYRQLI+R P +R C HKIMISKEAIGNSHALTS PGS+
Sbjct: 236 EHFQPISKRE*GIIVSISNIYRQLISRPKPRYR*CTHKIMISKEAIGNSHALTSG*PGSN 415
Query: 290 *SFYLFQXXXXXXXWPSRYNNH*GRDFTCNTDDKVRAIKRNTKV 421
*S YLFQ PSRYNNH* RDFT NT ++V IK +TKV
Sbjct: 416 *SIYLFQNLWLNNQRPSRYNNH*SRDFTSNTSNQV*TIKWDTKV 547
Score = 140 bits (301), Expect = 8e-033
Identities = 63/82 (76%), Positives = 66/82 (80%)
Frame = -1 / -2
Query: 321 SHKFWKR*KL*SLPGCLEVRAWELPIASLEIMILWAHCL*HGVSLLINCL*MLETLTMTR 142
SHKFWKR* L* LPG EVRAWELPIASLEIMILW H L* G+ LLINCL*MLE LTM
Sbjct: 447 SHKFWKR*ML*LLPGYPEVRAWELPIASLEIMILWVHYL*RGLGLLINCL*MLEMLTMIP 268
Query: 141 YSLLDMG*KCFEAIMIQHNFII 76
YSLLDMG*KC + + I HN II
Sbjct: 267 YSLLDMG*KCSKVVKI*HNLII 202
>gb|U46003.1|HVU46003 Hordeum vulgare beta-D-glucan exohydrolase, isoenzyme ExoII, mRNA,
complete cds
Length = 2105
Score = 148 bits (317), Expect(2) = 2e-060
Identities = 61/91 (67%), Positives = 72/91 (79%)
Frame = -3 / +2
Query: 868 RILRVKFISGVFEHPFSDQSLLDIVGCKEHRLLAREAVRKSLVLLKNGKDQNKPFLPLAK 689
RILRVKF G+FE P++D SL+ +G +EHR LAREAVRKSLVLLKNGK + P LPL K
Sbjct: 1130 RILRVKFTMGLFESPYADPSLVGELGKQEHRDLAREAVRKSLVLLKNGKSASTPLLPLPK 1309
Query: 688 DAKRILVAGTHADDIGYQCGGWTIAWHGDSG 596
A +ILVAG+HADD+G QCGGWTI W G +G
Sbjct: 1310 KAGKILVAGSHADDLGNQCGGWTITWQGQTG 1402
Score = 109 bits (232), Expect(2) = 2e-060
Identities = 43/90 (47%), Positives = 58/90 (64%)
Frame = -3 / +2
Query: 388 IIRVASKIPTLVIVISGRPLIIESQVLEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTL 209
+I+ K V+V+ ++ + ++A VAAWLPGSEG G+ D LFGD+ F G L
Sbjct: 1610 VIQNVCKSVRCVVVLISGRPLVVEPYISAMDAFVAAWLPGSEGQGVADVLFGDYGFSGKL 1789
Query: 208 PVTWCKSVDQLPIDAGDSNYDPLFPVGYGL 119
TW KS DQLP++ GD +YDPLFP G+GL
Sbjct: 1790 ARTWFKSADQLPMNVGDKHYDPLFPFGFGL 1879
Score = 101 bits (216), Expect(3) = 9e-051
Identities = 46/90 (51%), Positives = 55/90 (61%)
Frame = +3 / -3
Query: 597 PLSPCHAIVQPPH*YPISSACVPATSILFASLANGRNGLF*SLPFFRSTKDLRTASRASN 776
P+ PCH +V PPH P SSA +PAT IL A G NG+ PFF +T D TASRA +
Sbjct: 1401 PVCPCHVMVHPPHWLPKSSAWLPATRILPAFFGRGNNGVEADFPFFSNTNDFLTASRARS 1222
Query: 777 RCSLQPTMSSRDWSENGCSNTPEINLTLRI 866
RCS P+ +R S G SN P +N TLRI
Sbjct: 1221 RCSCFPSSPTRLGSA*GLSNRPMVNFTLRI 1132
Score = 100 bits (214), Expect = 8e-021
Identities = 42/93 (45%), Positives = 61/93 (65%)
Frame = -3 / +2
Query: 589 TLGTSILEAIQELVGVQTEVVYEKCPTEAMIETGGFSYAVVVVGEVPYAEWTGDRTDLSI 410
T GT+IL AI+ V TEVV+ + P A +++G + YA+VVVGE PYAE GD +L+I
Sbjct: 1412 TAGTTILSAIKSTVDPSTEVVFSENPDSAAVDSGKYDYAIVVVGEPPYAETFGDNLNLTI 1591
Query: 409 PFNGSDLIIRVASKIPTLVIVISGRPLIIESQV 311
P G +I V + +V++ISGRPL++E +
Sbjct: 1592 PAPGPSVIQNVCKSVRCVVVLISGRPLVVEPYI 1690
Score = 69.8 bits (146), Expect(3) = 9e-051
Identities = 33/66 (50%), Positives = 39/66 (59%)
Frame = +3 / -3
Query: 105 LRNIFSPYPTGNSGS*LESPASIGN*STDLHHVTGNVPTKS*SPKRQSVIPMPSLPGSQA 284
L ++ P P G SGS* SP IG+ S DL+HV + P *SP S P PS PGS A
Sbjct: 1893 LASVVRPNPKGKSGS*CLSPTFIGSWSADLNHVRASFPENP*SPNSTSATPWPSEPGSHA 1714
Query: 285 ATRASI 302
AT AS+
Sbjct: 1713 ATNASM 1696
Score = 67.5 bits (141), Expect(3) = 9e-051
Identities = 40/91 (43%), Positives = 50/91 (54%)
Frame = +3 / -3
Query: 321 SIINGLPDITITRVGILLATRMIRSEPLNGILRSVLSPVHSAYGTSPTTTTA*ENPPVSI 500
S +GLP+++ T LL T I P GI+R LSP SAYG SPTTT A* P+S
Sbjct: 1680 STTSGLPEMSTTTHLTLLHTFWITEGPGAGIVRFRLSPNVSAYGGSPTTTMA*SYLPLST 1501
Query: 501 IASVGHFSYTTSVCTPTNSCMASNMLVPRVI 593
A G TTSV T +A ++VP V+
Sbjct: 1500 AALSGFSEKTTSVLGSTVDLIAERIVVPAVL 1408
>gb|CB883402.1|CB883402 HQ02C08w HQ Hordeum vulgare subsp. vulgare cDNA clone HQ02C08
3-PRIME, mRNA sequence
Length = 665
Score = 219 bits (473), Expect = 2e-056
Identities = 92/152 (60%), Positives = 114/152 (75%)
Frame = -3 / +1
Query: 868 RILRVKFISGVFEHPFSDQSLLDIVGCKEHRLLAREAVRKSLVLLKNGKDQNKPFLPLAK 689
RILRVKF G+F++P +D S D +G KEHR LAREAVRKSLVLLKNG N+ FLPL K
Sbjct: 208 RILRVKFTMGLFDNPLADLSFADQLGKKEHRELAREAVRKSLVLLKNGNTPNQQFLPLPK 387
Query: 688 DAKRILVAGTHADDIGYQCGGWTIAWHGDSGKITLGTSILEAIQELVGVQTEVVYEKCPT 509
A +ILVAG+HA ++GYQCGGW+I W G SG IT GT+IL+AI+ VG T VVY + P
Sbjct: 388 KASKILVAGSHASNLGYQCGGWSIQWMGGSGDITAGTTILDAIKSTVGDATPVVYSENPD 567
Query: 508 EAMIETGGFSYAVVVVGEVPYAEWTGDRTDLS 413
++ ++ FS+A+VVVGE PYAE GD TDL+
Sbjct: 568 DSFMKKNDFSFAIVVVGETPYAETVGDNTDLT 663
Score = 137 bits (294), Expect = 8e-032
Identities = 75/158 (47%), Positives = 88/158 (55%)
Frame = +3 / -1
Query: 411 ILRSVLSPVHSAYGTSPTTTTA*ENPPVSIIASVGHFSYTTSVCTPTNSCMASNMLVPRV 590
I+RSVLSP SAYG SPTTT A E + S G TT V +PT MAS ++VP V
Sbjct: 665 IVRSVLSPTVSAYGVSPTTTIAKEKSFFFMKLSSGFSE*TTGVASPTVDFMASRIVVPAV 486
Query: 591 IFPLSPCHAIVQPPH*YPISSACVPATSILFASLANGRNGLF*SLPFFRSTKDLRTASRA 770
I PL P H I PPH P A +PAT IL A GRN LPFF T D TAS A
Sbjct: 485 ISPLPPIH*IDHPPHW*PKLLA*LPATRILLAFFGRGRNC*LGVLPFFNRTSDFLTASLA 306
Query: 771 SNRCSLQPTMSSRDWSENGCSNTPEINLTLRIRLVRDS 884
++ CS P+ S++ S G S P +N T R+RL S
Sbjct: 305 NSLCSFFPS*SAKLRSAKGLSKRPIVNFTRRMRLTASS 192
>gb|AV925468.1|AV925468 AV925468 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd24f16 5', mRNA sequence
Length = 621
Score = 148 bits (317), Expect(2) = 3e-052
Identities = 61/91 (67%), Positives = 72/91 (79%)
Frame = -3 / +2
Query: 868 RILRVKFISGVFEHPFSDQSLLDIVGCKEHRLLAREAVRKSLVLLKNGKDQNKPFLPLAK 689
RILRVKF G+FE P++D SL+ +G +EHR LAREAVRKSLVLLKNGK + P LPL K
Sbjct: 122 RILRVKFTMGLFESPYADPSLVGELGKQEHRDLAREAVRKSLVLLKNGKSASTPLLPLPK 301
Query: 688 DAKRILVAGTHADDIGYQCGGWTIAWHGDSG 596
A +ILVAG+HADD+G QCGGWTI W G +G
Sbjct: 302 KAGKILVAGSHADDLGNQCGGWTITWQGQTG 394
Score = 101 bits (216), Expect(2) = 3e-032
Identities = 46/90 (51%), Positives = 55/90 (61%)
Frame = +3 / -1
Query: 597 PLSPCHAIVQPPH*YPISSACVPATSILFASLANGRNGLF*SLPFFRSTKDLRTASRASN 776
P+ PCH +V PPH P SSA +PAT IL A G NG+ PFF +T D TASRA +
Sbjct: 393 PVCPCHVMVHPPHWLPKSSAWLPATRILPAFFGRGNNGVEADFPFFSNTNDFLTASRARS 214
Query: 777 RCSLQPTMSSRDWSENGCSNTPEINLTLRI 866
RCS P+ +R S G SN P +N TLRI
Sbjct: 213 RCSCFPSSPTRLGSA*GLSNRPMVNFTLRI 124
Score = 77.6 bits (163), Expect(2) = 3e-052
Identities = 34/71 (47%), Positives = 46/71 (64%)
Frame = -3 / +2
Query: 589 TLGTSILEAIQELVGVQTEVVYEKCPTEAMIETGGFSYAVVVVGEVPYAEWTGDRTDLSI 410
T GT+IL AI+ V TEVV+ + P A +++G + YA+VVVGE PYAE GD +L+I
Sbjct: 404 TAGTTILSAIKSTVDPSTEVVFSENPDSAAVDSGKYDYAIVVVGEPPYAETFGDNLNLTI 583
Query: 409 PFNGSDLIIRV 377
P G +I V
Sbjct: 584 PAPGPSVIQNV 616
Score = 57.0 bits (118), Expect(2) = 3e-032
Identities = 34/74 (45%), Positives = 40/74 (54%)
Frame = +3 / -1
Query: 372 LATRMIRSEPLNGILRSVLSPVHSAYGTSPTTTTA*ENPPVSIIASVGHFSYTTSVCTPT 551
L T I P GI+R LSP SAYG SPTTT A* P+S A G TTSV T
Sbjct: 621 LHTFWITEGPGAGIVRFRLSPNVSAYGGSPTTTMA*SYLPLSTAALSGFSEKTTSVLGST 442
Query: 552 NSCMASNMLVPRVI 593
+A ++VP V+
Sbjct: 441 VDLIAERIVVPAVL 400
>gb|CA015249.1|CA015249 HT13L19r HT Hordeum vulgare subsp. vulgare cDNA clone HT13L19
5-PRIME, mRNA sequence
Length = 570
Score = 115 bits (245), Expect(2) = 2e-050
Identities = 44/70 (62%), Positives = 54/70 (77%)
Frame = -3 / +2
Query: 328 IIESQVLEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTLPVTWCKSVDQLPIDAGDSNY 149
++ +L +ALVAAWLPGSEG G+TD LFGD F G LP TW KSVDQLP++ GD++Y
Sbjct: 287 VVVQPLLAASDALVAAWLPGSEGQGVTDALFGDFGFTGRLPRTWFKSVDQLPMNVGDAHY 466
Query: 148 DPLFPVGYGL 119
DPLF +GYGL
Sbjct: 467 DPLFRLGYGL 496
Score = 104 bits (222), Expect(2) = 2e-050
Identities = 41/98 (41%), Positives = 63/98 (64%)
Frame = -3 / +2
Query: 613 WHGDSGKITLGTSILEAIQELVGVQTEVVYEKCPTEAMIETGGFSYAVVVVGEVPYAEWT 434
W GD+G+ T+GT+ILEA++ V T VV+ + P +++GGFSYA+V VGE PY E
Sbjct: 5 WQGDTGRTTVGTTILEAVKAAVDPSTVVVFAENPDAEFVKSGGFSYAIVAVGEHPYTETK 184
Query: 433 GDRTDLSIPFNGSDLIIRVASKIPTLVIVISGRPLIIE 320
GD +L+IP G + V + ++ISGRP++++
Sbjct: 185 GDNLNLTIPEPGLSTVQAVCGGVRCATVLISGRPVVVQ 298
Score = 75.3 bits (158), Expect(2) = 1e-029
Identities = 34/62 (54%), Positives = 40/62 (64%)
Frame = +3 / -1
Query: 114 IFSPYPTGNSGS*LESPASIGN*STDLHHVTGNVPTKS*SPKRQSVIPMPSLPGSQAATR 293
+ PYP+ SGS* SP IG+ STDL+HV G++P SP SV P PS PGS AAT
Sbjct: 501 VVRPYPSRKSGS*CASPTFIGSWSTDLNHVRGSLPVNPKSPNSASVTPCPSEPGSHAATS 322
Query: 294 AS 299
AS
Sbjct: 321 AS 316
Score = 74.8 bits (157), Expect(2) = 1e-029
Identities = 34/73 (46%), Positives = 48/73 (65%)
Frame = +3 / -1
Query: 399 PLNGILRSVLSPVHSAYGTSPTTTTA*ENPPVSIIASVGHFSYTTSVCTPTNSCMASNML 578
P +G++R LSP+ S YG SPT T A*E PP+ ++ G + TT+V T + AS M+
Sbjct: 219 PGSGMVRFRLSPLVSVYGCSPTATMA*EKPPLLTNSASGFSANTTTVDGSTAAFTASRMV 40
Query: 579 VPRVIFPLSPCHA 617
VP V+ P+SPCH+
Sbjct: 39 VPTVVRPVSPCHS 1
>gb|AV913362.1|AV913362 AV913362 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21m18 5', mRNA sequence
Length = 585
Score = 100 bits (214), Expect(3) = 3e-049
Identities = 42/93 (45%), Positives = 61/93 (65%)
Frame = -3 / +1
Query: 589 TLGTSILEAIQELVGVQTEVVYEKCPTEAMIETGGFSYAVVVVGEVPYAEWTGDRTDLSI 410
T GT+IL AI+ V TEVV+ + P A +++G + YA+VVVGE PYAE GD +L+I
Sbjct: 109 TAGTTILSAIKSTVDPSTEVVFSENPDSAAVDSGKYDYAIVVVGEPPYAETFGDNLNLTI 288
Query: 409 PFNGSDLIIRVASKIPTLVIVISGRPLIIESQV 311
P G +I V + +V++ISGRPL++E +
Sbjct: 289 PAPGPSVIQNVCKSVRCVVVLISGRPLVVEPYI 387
Score = 73.0 bits (153), Expect(3) = 3e-049
Identities = 28/52 (53%), Positives = 33/52 (63%)
Frame = -3 / +2
Query: 274 PGSEGMGITDCLFGDHDFVGTLPVTWCKSVDQLPIDAGDSNYDPLFPVGYGL 119
P D LFGD+ F G L TW KS DQLP++ GD +YDPLFP G+GL
Sbjct: 422 PARRARAWPDVLFGDYGFSGKLARTWFKSADQLPMNVGDKHYDPLFPFGFGL 577
Score = 67.5 bits (141), Expect(4) = 3e-029
Identities = 40/91 (43%), Positives = 50/91 (54%)
Frame = +3 / -2
Query: 321 SIINGLPDITITRVGILLATRMIRSEPLNGILRSVLSPVHSAYGTSPTTTTA*ENPPVSI 500
S +GLP+++ T LL T I P GI+R LSP SAYG SPTTT A* P+S
Sbjct: 377 STTSGLPEMSTTTHLTLLHTFWITEGPGAGIVRFRLSPNVSAYGGSPTTTMA*SYLPLST 198
Query: 501 IASVGHFSYTTSVCTPTNSCMASNMLVPRVI 593
A G TTSV T +A ++VP V+
Sbjct: 197 AALSGFSEKTTSVLGSTVDLIAERIVVPAVL 105
Score = 60.2 bits (125), Expect(3) = 3e-049
Identities = 20/28 (71%), Positives = 24/28 (85%)
Frame = -3 / +1
Query: 679 RILVAGTHADDIGYQCGGWTIAWHGDSG 596
+ILVAG+HADD+G QCGGWTI W G +G
Sbjct: 16 KILVAGSHADDLGNQCGGWTITWQGQTG 99
Score = 44.6 bits (91), Expect(4) = 3e-029
Identities = 17/28 (60%), Positives = 20/28 (71%)
Frame = +3 / -2
Query: 597 PLSPCHAIVQPPH*YPISSACVPATSIL 680
P+ PCH +V PPH P SSA +PAT IL
Sbjct: 98 PVCPCHVMVHPPHWLPKSSAWLPATRIL 15
Score = 44.6 bits (91), Expect(4) = 3e-029
Identities = 21/46 (45%), Positives = 26/46 (56%)
Frame = +3 / -1
Query: 111 NIFSPYPTGNSGS*LESPASIGN*STDLHHVTGNVPTKS*SPKRQS 248
++ P P G SGS* SP IG+ S DL+HV + P *SP S
Sbjct: 585 SVVRPNPKGKSGS*CLSPTFIGSWSADLNHVRASFPENP*SPNSTS 448
Score = 27.2 bits (53), Expect(4) = 3e-029
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +3 / -2
Query: 255 PMPSLPGSQAATRASI 302
P PS PGS AAT AS+
Sbjct: 440 PWPSEPGSHAATNASM 393
>gb|BF257182.2|BF257182 HVSMEf0012B20f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0012B20f, mRNA sequence
Length = 537
Score = 148 bits (318), Expect(2) = 3e-049
Identities = 61/91 (67%), Positives = 72/91 (79%)
Frame = -3 / +2
Query: 868 RILRVKFISGVFEHPFSDQSLLDIVGCKEHRLLAREAVRKSLVLLKNGKDQNKPFLPLAK 689
RILRVKF G+FE P++D SL+ +G +EHR LAREAVRKSLVLLKNGK + P LPL K
Sbjct: 83 RILRVKFTMGLFESPYADPSLIGELGKQEHRDLAREAVRKSLVLLKNGKSASTPLLPLPK 262
Query: 688 DAKRILVAGTHADDIGYQCGGWTIAWHGDSG 596
A +ILVAG+HADD+G QCGGWTI W G +G
Sbjct: 263 KAGKILVAGSHADDLGNQCGGWTITWQGQTG 355
Score = 100 bits (214), Expect(2) = 8e-030
Identities = 46/90 (51%), Positives = 54/90 (60%)
Frame = +3 / -1
Query: 597 PLSPCHAIVQPPH*YPISSACVPATSILFASLANGRNGLF*SLPFFRSTKDLRTASRASN 776
P+ PCH +V PPH P SSA +PAT IL A G NG+ PFF +T D TASRA +
Sbjct: 354 PVCPCHVMVHPPHWLPKSSAWLPATRILPAFFGRGNNGVEADFPFFSNTNDFLTASRARS 175
Query: 777 RCSLQPTMSSRDWSENGCSNTPEINLTLRI 866
RCS P+ R S G SN P +N TLRI
Sbjct: 174 RCSCFPSSPMRLGSA*GLSNRPMVNFTLRI 85
Score = 67.0 bits (140), Expect(2) = 3e-049
Identities = 28/54 (51%), Positives = 37/54 (68%)
Frame = -3 / +2
Query: 589 TLGTSILEAIQELVGVQTEVVYEKCPTEAMIETGGFSYAVVVVGEVPYAEWTGD 428
T GT+IL AI+ V TEVV+ + P A +++G + YA+VVVGE PYAE GD
Sbjct: 365 TAGTTILSAIKSTVDPSTEVVFSENPDSAAVDSGKYDYAIVVVGEPPYAETFGD 526
Score = 49.6 bits (102), Expect(2) = 8e-030
Identities = 27/56 (48%), Positives = 32/56 (57%)
Frame = +3 / -1
Query: 426 LSPVHSAYGTSPTTTTA*ENPPVSIIASVGHFSYTTSVCTPTNSCMASNMLVPRVI 593
LSP SAYG SPTTT A* P+S A G TTSV T +A ++VP V+
Sbjct: 528 LSPNVSAYGGSPTTTMA*SYLPLSTAALSGFSEKTTSVLGSTVDLIAERIVVPAVL 361
>gb|BU977331.1|BU977331 HA11D20r HA Hordeum vulgare subsp. vulgare cDNA clone HA11D20
5-PRIME, mRNA sequence
Length = 486
Score = 148 bits (317), Expect(2) = 9e-047
Identities = 61/91 (67%), Positives = 72/91 (79%)
Frame = -3 / +2
Query: 868 RILRVKFISGVFEHPFSDQSLLDIVGCKEHRLLAREAVRKSLVLLKNGKDQNKPFLPLAK 689
RILRVKF G+FE P++D SL+ +G +EHR LAREAVRKSLVLLKNGK + P LPL K
Sbjct: 59 RILRVKFTMGLFESPYADPSLVGELGKQEHRDLAREAVRKSLVLLKNGKSASTPLLPLPK 238
Query: 688 DAKRILVAGTHADDIGYQCGGWTIAWHGDSG 596
A +ILVAG+HADD+G QCGGWTI W G +G
Sbjct: 239 KAGKILVAGSHADDLGNQCGGWTITWQGQTG 331
Score = 101 bits (216), Expect(2) = 3e-028
Identities = 46/90 (51%), Positives = 55/90 (61%)
Frame = +3 / -1
Query: 597 PLSPCHAIVQPPH*YPISSACVPATSILFASLANGRNGLF*SLPFFRSTKDLRTASRASN 776
P+ PCH +V PPH P SSA +PAT IL A G NG+ PFF +T D TASRA +
Sbjct: 330 PVCPCHVMVHPPHWLPKSSAWLPATRILPAFFGRGNNGVEADFPFFSNTNDFLTASRARS 151
Query: 777 RCSLQPTMSSRDWSENGCSNTPEINLTLRI 866
RCS P+ +R S G SN P +N TLRI
Sbjct: 150 RCSCFPSSPTRLGSA*GLSNRPMVNFTLRI 61
Score = 59.3 bits (123), Expect(2) = 9e-047
Identities = 24/48 (50%), Positives = 33/48 (68%)
Frame = -3 / +2
Query: 589 TLGTSILEAIQELVGVQTEVVYEKCPTEAMIETGGFSYAVVVVGEVPY 446
T GT+IL AI+ V TEVV+ + P A +++G + YA+VVVGE PY
Sbjct: 341 TAGTTILSAIKSTVDPSTEVVFSENPDSAAVDSGKYDYAIVVVGEPPY 484
Score = 43.7 bits (89), Expect(2) = 3e-028
Identities = 23/50 (46%), Positives = 28/50 (56%)
Frame = +3 / -1
Query: 444 AYGTSPTTTTA*ENPPVSIIASVGHFSYTTSVCTPTNSCMASNMLVPRVI 593
AYG SPTTT A* P+S A G TTSV T +A ++VP V+
Sbjct: 486 AYGGSPTTTMA*SYLPLSTAALSGFSEKTTSVLGSTVDLIAERIVVPAVL 337
>gb|AV914506.1|AV914506 AV914506 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6k08 5', mRNA sequence
Length = 544
Score = 105 bits (225), Expect(2) = 3e-043
Identities = 43/62 (69%), Positives = 48/62 (77%)
Frame = -3 / +2
Query: 781 HRLLAREAVRKSLVLLKNGKDQNKPFLPLAKDAKRILVAGTHADDIGYQCGGWTIAWHGD 602
HR LAREA RKSLVLLKNGK + P LPL K A +ILVAG+HAD +G QCGGWTI W G
Sbjct: 41 HRDLAREAXRKSLVLLKNGKSASTPLLPLPKKAGKILVAGSHADXLGNQCGGWTITWXGQ 220
Query: 601 SG 596
+G
Sbjct: 221 TG 226
Score = 89.5 bits (189), Expect(2) = 3e-043
Identities = 39/86 (45%), Positives = 54/86 (62%)
Frame = -3 / +2
Query: 589 TLGTSILEAIQELVGVQTEVVYEKCPTEAMIETGGFSYAVVVVGEVPYAEWTGDRTDLSI 410
T GT+IL AI+ V TEVV+ + P A +++G + YA+VVVGE PYAE GD +L+I
Sbjct: 236 TAGTTILSAIKSTVDPSTEVVFSENPDSAAVDSGKYDYAIVVVGEPPYAETFGDNLNLTI 415
Query: 409 PFNGSDLIIRVASKIPTLVIVISGRP 332
P G +I V + + +ISGRP
Sbjct: 416 PAPGPSVIQNVCKSVRCVXXLISGRP 493
Score = 70.7 bits (148), Expect(2) = 9e-025
Identities = 32/71 (45%), Positives = 39/71 (54%)
Frame = +3 / -2
Query: 597 PLSPCHAIVQPPH*YPISSACVPATSILFASLANGRNGLF*SLPFFRSTKDLRTASRASN 776
P+ P H +V PPH P SA +PAT IL A G NG+ PFF +T D ASRA +
Sbjct: 225 PVCPXHVMVHPPHWLPKXSAWLPATRILPAFFGRGNNGVEADFPFFSNTNDFLXASRARS 46
Query: 777 RCSLQPTMSSR 809
RC L + R
Sbjct: 45 RCYLLTRVHQR 13
Score = 62.9 bits (131), Expect(2) = 9e-025
Identities = 38/86 (44%), Positives = 46/86 (53%)
Frame = +3 / -2
Query: 333 GLPDITITRVGILLATRMIRSEPLNGILRSVLSPVHSAYGTSPTTTTA*ENPPVSIIASV 512
GLP+++ LL T I P GI+R LSP SAYG SPTTT A* P+S A
Sbjct: 492 GLPEMSXXTHLTLLHTFWITEGPGAGIVRFRLSPNVSAYGGSPTTTMA*SYLPLSTAALS 313
Query: 513 GHFSYTTSVCTPTNSCMASNMLVPRV 590
G TTSV T +A ++VP V
Sbjct: 312 GFSEKTTSVLGSTVDLIAERIVVPAV 235
>gb|AL504655.1|AL504655 AL504655 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW05P08V 5', mRNA sequence
Length = 700
Score = 148 bits (317), Expect(2) = 2e-040
Identities = 61/91 (67%), Positives = 72/91 (79%)
Frame = -3 / +2
Query: 868 RILRVKFISGVFEHPFSDQSLLDIVGCKEHRLLAREAVRKSLVLLKNGKDQNKPFLPLAK 689
RILRVKF G+FE P++D SL+ +G +EHR LAREAVRKSLVLLKNGK + P LPL K
Sbjct: 212 RILRVKFTMGLFESPYADPSLVGELGKQEHRDLAREAVRKSLVLLKNGKSASTPLLPLPK 391
Query: 688 DAKRILVAGTHADDIGYQCGGWTIAWHGDSG 596
A +ILVAG+HADD+G QCGGWTI W G +G
Sbjct: 392 KAGKILVAGSHADDLGNQCGGWTITWQGQTG 484
Score = 101 bits (216), Expect(2) = 7e-025
Identities = 46/90 (51%), Positives = 55/90 (61%)
Frame = +3 / -2
Query: 597 PLSPCHAIVQPPH*YPISSACVPATSILFASLANGRNGLF*SLPFFRSTKDLRTASRASN 776
P+ PCH +V PPH P SSA +PAT IL A G NG+ PFF +T D TASRA +
Sbjct: 483 PVCPCHVMVHPPHWLPKSSAWLPATRILPAFFGRGNNGVEADFPFFSNTNDFLTASRARS 304
Query: 777 RCSLQPTMSSRDWSENGCSNTPEINLTLRI 866
RCS P+ +R S G SN P +N TLRI
Sbjct: 303 RCSCFPSSPTRLGSA*GLSNRPMVNFTLRI 214
Score = 40.5 bits (82), Expect(2) = 2e-040
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = -3 / +1
Query: 478 YAVVVVGEVPYAEWTGDRTDLSIP 407
YA+VVVGE PYAE GD +L+IP
Sbjct: 607 YAIVVVGEPPYAETFGDNLNLTIP 678
Score = 34.5 bits (69), Expect(2) = 7e-025
Identities = 17/24 (70%), Positives = 18/24 (75%)
Frame = +3 / -3
Query: 408 GILRSVLSPVHSAYGTSPTTTTA* 479
GI+R LSP SAYG SPTTT A*
Sbjct: 677 GIVRFRLSPNVSAYGGSPTTTMA* 606
>gb|BQ469930.1|BQ469930 HX01E12T HX Hordeum vulgare subsp. vulgare cDNA clone HX01E12
5-PRIME, mRNA sequence
Length = 462
Score = 159 bits (342), Expect = 2e-038
Identities = 63/130 (48%), Positives = 88/130 (67%)
Frame = -3 / +1
Query: 709 PFLPLAKDAKRILVAGTHADDIGYQCGGWTIAWHGDSGKITLGTSILEAIQELVGVQTEV 530
P LPL K A +ILVAG+HAD++GYQCGGWTI W GD+G+ T+GT+ILEA++ V T V
Sbjct: 40 PLLPLPKKAPKILVAGSHADNLGYQCGGWTIEWQGDTGRTTVGTTILEAVKAAVDPSTVV 219
Query: 529 VYEKCPTEAMIETGGFSYAVVVVGEVPYAEWTGDRTDLSIPFNGSDLIIRVASKIPTLVI 350
V+ + P +++GGFSYA+V VGE PY E GD +L+IP G + V + +
Sbjct: 220 VFAENPDAEFVKSGGFSYAIVAVGEHPYTETKGDNLNLTIPEPGLSTVQAVCGGVRCATV 399
Query: 349 VISGRPLIIE 320
+ISGR +++
Sbjct: 400 LISGRSEVVQ 429
Score = 110 bits (235), Expect = 1e-023
Identities = 52/104 (50%), Positives = 70/104 (67%)
Frame = +3 / -2
Query: 399 PLNGILRSVLSPVHSAYGTSPTTTTA*ENPPVSIIASVGHFSYTTSVCTPTNSCMASNML 578
P +G++R LSP+ S YG SPT T A*E PP+ ++ G + TT+V T + AS M+
Sbjct: 350 PGSGMVRFRLSPLVSVYGCSPTATMA*EKPPLLTNSASGFSANTTTVDGSTAAFTASRMV 171
Query: 579 VPRVIFPLSPCHAIVQPPH*YPISSACVPATSILFASLANGRNG 710
VP V+ P+SPCH++VQPPH P SA +PAT IL A L +GR+G
Sbjct: 170 VPTVVRPVSPCHSMVQPPHW*PRLSAWLPATRILGAFLGSGRSG 39
>gb|BU973151.1|BU973151 HB23O18r BC Hordeum vulgare subsp. vulgare cDNA clone HB23O18
5-PRIME, mRNA sequence
Length = 515
Score = 115 bits (245), Expect(2) = 2e-038
Identities = 44/70 (62%), Positives = 54/70 (77%)
Frame = -3 / +3
Query: 328 IIESQVLEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTLPVTWCKSVDQLPIDAGDSNY 149
++ +L +ALVAAWLPGSEG G+TD LFGD F G LP TW KSVDQLP++ GD++Y
Sbjct: 174 VVVQPLLAASDALVAAWLPGSEGQGVTDALFGDFGFTGRLPRTWFKSVDQLPMNVGDAHY 353
Query: 148 DPLFPVGYGL 119
DPLF +GYGL
Sbjct: 354 DPLFRLGYGL 383
Score = 64.3 bits (134), Expect(2) = 2e-038
Identities = 25/58 (43%), Positives = 37/58 (63%)
Frame = -3 / +3
Query: 493 TGGFSYAVVVVGEVPYAEWTGDRTDLSIPFNGSDLIIRVASKIPTLVIVISGRPLIIE 320
+GGFSYA+V VGE PY E GD +L+IP G + V + ++ISGRP++++
Sbjct: 12 SGGFSYAIVAVGEHPYTETKGDNLNLTIPEPGLSTVQAVCGGVRCATVLISGRPVVVQ 185
>gb|BM098044.2|BM098044 EBpi03_SQ002_G06_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ002_G06 5', mRNA sequence
Length = 471
Score = 127 bits (273), Expect(2) = 1e-037
Identities = 49/100 (49%), Positives = 68/100 (68%)
Frame = -3 / +1
Query: 664 GTHADDIGYQCGGWTIAWHGDSGKITLGTSILEAIQELVGVQTEVVYEKCPTEAMIETGG 485
G+HAD++GYQCGGWTI W GD+G+ T+GT+ILEA++ V T VV+ + P +++GG
Sbjct: 163 GSHADNLGYQCGGWTIEWQGDTGRTTVGTTILEAVKAAVDPSTVVVFAENPDAEFVKSGG 342
Query: 484 FSYAVVVVGEVPYAEWTGDRTDLSIPFNGSDLIIRVASKI 365
FSYA+V VGE PY E GD +L+IP G + V +
Sbjct: 343 FSYAIVAVGEHPYTETKGDNLNLTIPEPGLSTVQAVCGGV 462
Score = 48.7 bits (100), Expect(2) = 1e-037
Identities = 21/33 (63%), Positives = 27/33 (81%)
Frame = -3 / +2
Query: 820 SDQSLLDIVGCKEHRLLAREAVRKSLVLLKNGK 722
+D ++ + +G +EHR LAREA RKSLVLLKNGK
Sbjct: 2 ADPAMAEQLGKQEHRDLAREAARKSLVLLKNGK 100
>gb|BI947544.1|BI947544 HVSMEl0005N11f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0005N11f, mRNA sequence
Length = 489
Score = 100 bits (212), Expect(3) = 1e-037
Identities = 40/56 (71%), Positives = 44/56 (78%)
Frame = -3 / +3
Query: 763 EAVRKSLVLLKNGKDQNKPFLPLAKDAKRILVAGTHADDIGYQCGGWTIAWHGDSG 596
EAVRKSLVLLKNGK P LPL K A +ILVAG+HADD+G QCGGWTI W G +G
Sbjct: 3 EAVRKSLVLLKNGKSACTPLLPLPKKAGKILVAGSHADDLGNQCGGWTITWQGQTG 170
Score = 56.1 bits (116), Expect(3) = 1e-037
Identities = 23/47 (48%), Positives = 32/47 (68%)
Frame = -3 / +3
Query: 589 TLGTSILEAIQELVGVQTEVVYEKCPTEAMIETGGFSYAVVVVGEVP 449
T GT+IL AI+ V TEVV+ + P A +++G + YA+VVVGE P
Sbjct: 180 TAGTTILSAIKSTVDPSTEVVFSENPDSAAVDSGKYDYAIVVVGEPP 320
Score = 38.6 bits (78), Expect(3) = 1e-037
Identities = 15/43 (34%), Positives = 27/43 (62%)
Frame = -3 / +1
Query: 451 PYAEWTGDRTDLSIPFNGSDLIIRVASKIPTLVIVISGRPLII 323
P + +G+ +L+IP G +I V + +V++ISGRPL++
Sbjct: 319 PTLKPSGNNLNLTIPAPGPSVIQNVCKSVKCVVVLISGRPLVV 447
>gb|BU996833.1|BU996833 HM14O21r HM Hordeum vulgare subsp. vulgare cDNA clone HM14O21
5-PRIME, mRNA sequence
Length = 532
Score = 112 bits (239), Expect(2) = 6e-037
Identities = 44/100 (44%), Positives = 64/100 (64%)
Frame = -3 / +1
Query: 640 YQCGGWTIAWHGDSGKITLGTSILEAIQELVGVQTEVVYEKCPTEAMIETGGFSYAVVVV 461
++CGGWTI W GD+G+ T+GT+ILEA++ V T VV+ + P +++GGFSYA+V V
Sbjct: 232 WECGGWTIEWQGDTGRTTVGTTILEAVKAAVDPSTVVVFAENPDAEFVKSGGFSYAIVAV 411
Query: 460 GEVPYAEWTGDRTDLSIPFNGSDLIIRVASKIPTLVIVIS 341
GE PY E GD +L+IP G + V + ++IS
Sbjct: 412 GEHPYTETKGDNLNLTIPEPGLSTVQAVCGGVRCATVLIS 531
Score = 62.0 bits (129), Expect(2) = 6e-037
Identities = 25/40 (62%), Positives = 34/40 (85%)
Frame = -3 / +3
Query: 841 GVFEHPFSDQSLLDIVGCKEHRLLAREAVRKSLVLLKNGK 722
G+FE+P++D ++ + +G +EHR LAREA RKSLVLLKNGK
Sbjct: 27 GLFENPYADPAMAEQLGKQEHRDLAREAARKSLVLLKNGK 146
>gb|BE411093.1|BE411093 ISC002.C07F990406 ITEC ISC Barley Leaf Library Hordeum vulgare
subsp. vulgare cDNA clone ISC002.C07, mRNA sequence
Length = 426
Score = 148 bits (317), Expect = 5e-035
Identities = 61/91 (67%), Positives = 72/91 (79%)
Frame = -3 / +3
Query: 868 RILRVKFISGVFEHPFSDQSLLDIVGCKEHRLLAREAVRKSLVLLKNGKDQNKPFLPLAK 689
RILRVKF G+FE P++D SL+ +G +EHR LAREAVRKSLVLLKNGK + P LPL K
Sbjct: 24 RILRVKFTMGLFESPYADPSLVGELGKQEHRDLAREAVRKSLVLLKNGKSASTPLLPLPK 203
Query: 688 DAKRILVAGTHADDIGYQCGGWTIAWHGDSG 596
A +ILVAG+HADD+G QCGGWTI W G +G
Sbjct: 204 KAGKILVAGSHADDLGNQCGGWTITWQGQTG 296
Score = 101 bits (216), Expect = 4e-021
Identities = 46/90 (51%), Positives = 55/90 (61%)
Frame = +3 / -3
Query: 597 PLSPCHAIVQPPH*YPISSACVPATSILFASLANGRNGLF*SLPFFRSTKDLRTASRASN 776
P+ PCH +V PPH P SSA +PAT IL A G NG+ PFF +T D TASRA +
Sbjct: 295 PVCPCHVMVHPPHWLPKSSAWLPATRILPAFFGRGNNGVEADFPFFSNTNDFLTASRARS 116
Query: 777 RCSLQPTMSSRDWSENGCSNTPEINLTLRI 866
RCS P+ +R S G SN P +N TLRI
Sbjct: 115 RCSCFPSSPTRLGSA*GLSNRPMVNFTLRI 26
>gb|AV918661.1|AV918661 AV918661 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21m18 3', mRNA sequence
Length = 663
Score = 109 bits (232), Expect(2) = 1e-034
Identities = 43/90 (47%), Positives = 58/90 (64%)
Frame = -3 / -1
Query: 388 IIRVASKIPTLVIVISGRPLIIESQVLEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTL 209
+I+ K V+V+ ++ + ++A VAAWLPGSEG G+ D LFGD+ F G L
Sbjct: 369 VIQNVCKSVRCVVVLISGRPLVVEPYISAMDAFVAAWLPGSEGQGVADVLFGDYGFSGKL 190
Query: 208 PVTWCKSVDQLPIDAGDSNYDPLFPVGYGL 119
TW KS DQLP++ GD +YDPLFP G+GL
Sbjct: 189 ARTWFKSADQLPMNVGDKHYDPLFPFGFGL 100
Score = 100 bits (214), Expect = 8e-021
Identities = 42/93 (45%), Positives = 61/93 (65%)
Frame = -3 / -1
Query: 589 TLGTSILEAIQELVGVQTEVVYEKCPTEAMIETGGFSYAVVVVGEVPYAEWTGDRTDLSI 410
T GT+IL AI+ V TEVV+ + P A +++G + YA+VVVGE PYAE GD +L+I
Sbjct: 567 TAGTTILSAIKSTVDPSTEVVFSENPDSAAVDSGKYDYAIVVVGEPPYAETFGDNLNLTI 388
Query: 409 PFNGSDLIIRVASKIPTLVIVISGRPLIIESQV 311
P G +I V + +V++ISGRPL++E +
Sbjct: 387 PAPGPSVIQNVCKSVRCVVVLISGRPLVVEPYI 289
Score = 69.8 bits (146), Expect(3) = 9e-034
Identities = 33/66 (50%), Positives = 39/66 (59%)
Frame = +3 / +2
Query: 105 LRNIFSPYPTGNSGS*LESPASIGN*STDLHHVTGNVPTKS*SPKRQSVIPMPSLPGSQA 284
L ++ P P G SGS* SP IG+ S DL+HV + P *SP S P PS PGS A
Sbjct: 86 LASVVRPNPKGKSGS*CLSPTFIGSWSADLNHVRASFPENP*SPNSTSATPWPSEPGSHA 265
Query: 285 ATRASI 302
AT AS+
Sbjct: 266 ATNASM 283
Score = 67.5 bits (141), Expect(3) = 9e-034
Identities = 40/91 (43%), Positives = 50/91 (54%)
Frame = +3 / +2
Query: 321 SIINGLPDITITRVGILLATRMIRSEPLNGILRSVLSPVHSAYGTSPTTTTA*ENPPVSI 500
S +GLP+++ T LL T I P GI+R LSP SAYG SPTTT A* P+S
Sbjct: 299 STTSGLPEMSTTTHLTLLHTFWITEGPGAGIVRFRLSPNVSAYGGSPTTTMA*SYLPLST 478
Query: 501 IASVGHFSYTTSVCTPTNSCMASNMLVPRVI 593
A G TTSV T +A ++VP V+
Sbjct: 479 AALSGFSEKTTSVLGSTVDLIAERIVVPAVL 571
Score = 60.2 bits (125), Expect(2) = 1e-034
Identities = 20/28 (71%), Positives = 24/28 (85%)
Frame = -3 / -1
Query: 679 RILVAGTHADDIGYQCGGWTIAWHGDSG 596
+ILVAG+HADD+G QCGGWTI W G +G
Sbjct: 660 KILVAGSHADDLGNQCGGWTITWQGQTG 577
Score = 44.6 bits (91), Expect(3) = 9e-034
Identities = 17/28 (60%), Positives = 20/28 (71%)
Frame = +3 / +2
Query: 597 PLSPCHAIVQPPH*YPISSACVPATSIL 680
P+ PCH +V PPH P SSA +PAT IL
Sbjct: 578 PVCPCHVMVHPPHWLPKSSAWLPATRIL 661
>gb|AV833400.1|AV833400 AV833400 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags8b19, mRNA sequence
Length = 540
Score = 113 bits (242), Expect(4) = 1e-033
Identities = 47/89 (52%), Positives = 58/89 (65%)
Frame = -3 / +1
Query: 385 IRVASKIPTLVIVISGRPLIIESQVLEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTLP 206
IR V+VI ++ L +EALVAAWLPG+EG G+ D LFGD+ F G L
Sbjct: 253 IRTVCSAVKCVVVIVSGRPVVIEPYLPLMEALVAAWLPGTEGQGVADVLFGDYSFTGKLS 432
Query: 205 VTWCKSVDQLPIDAGDSNYDPLFPVGYGL 119
TW KSVDQLP++ GD +YDPLFP G+GL
Sbjct: 433 RTWFKSVDQLPMNFGDPHYDPLFPFGFGL 519
Score = 29.5 bits (58), Expect(4) = 1e-033
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3 / +3
Query: 607 GDSGKITLGTSILEAIQELVGVQTEVVYEKCP 512
G + L T+IL AI+ VG T VVY + P
Sbjct: 33 GSGXILQLXTTILXAIKSTVGDATPVVYSEXP 128
Score = 29.0 bits (57), Expect(4) = 1e-033
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2 / +3
Query: 485 VFLCGGGCWRGSICRMDRR*N*P*YSV*W 399
+ LC CWR +IC RR*+* Y W
Sbjct: 156 LLLCYCCCWRDTICGNSRR*H*SDYPRPW 242
Score = 26.7 bits (52), Expect(4) = 1e-033
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -3 / +2
Query: 634 CGGWTIAWHG 605
CGGW+I W G
Sbjct: 2 CGGWSIQWXG 31
>gb|BG416639.1|BG416639 HVSMEk0013O04f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0013O04f, mRNA sequence
Length = 694
Score = 88.1 bits (186), Expect(2) = 1e-031
Identities = 35/55 (63%), Positives = 41/55 (74%)
Frame = -3 / +1
Query: 760 AVRKSLVLLKNGKDQNKPFLPLAKDAKRILVAGTHADDIGYQCGGWTIAWHGDSG 596
A R SLVLLKNGK + P LPL K A +IL+AG+HADD+G QCGGWTI W +G
Sbjct: 1 ADRMSLVLLKNGKAASTPLLPLPKKAAKILIAGSHADDLGNQCGGWTITWR*QTG 165
Score = 68.9 bits (144), Expect(2) = 1e-031
Identities = 35/93 (37%), Positives = 54/93 (58%)
Frame = -3 / +1
Query: 589 TLGTSILEAIQELVGVQTEVVYEKCPTEAMIETGGFSYAVVVVGEVPYAEWTGDRTDLSI 410
T GT+IL AI+ V TEVV+ + P + ++ G + YA+VVVG P +E +L+I
Sbjct: 175 TAGTTILWAIKCTVYPNTEVVF*QNPDSSTVDRGMYDYAIVVVGHPPNSETFCYYLNLTI 354
Query: 409 PFNGSDLIIRVASKIPTLVIVISGRPLIIESQV 311
P +I V + LV++ISG PL++E +
Sbjct: 355 PAPRPSVIHNVC*SVTCLVVLISGMPLVVEPYI 453
>gb|AV919570.1|AV919570 AV919570 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6k08 3', mRNA sequence
Length = 696
Score = 109 bits (232), Expect(3) = 1e-030
Identities = 43/90 (47%), Positives = 58/90 (64%)
Frame = -3 / -3
Query: 388 IIRVASKIPTLVIVISGRPLIIESQVLEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTL 209
+I+ K V+V+ ++ + ++A VAAWLPGSEG G+ D LFGD+ F G L
Sbjct: 397 VIQNVCKSVRCVVVLISGRPLVVEPYISAMDAFVAAWLPGSEGQGVADVLFGDYGFSGKL 218
Query: 208 PVTWCKSVDQLPIDAGDSNYDPLFPVGYGL 119
TW KS DQLP++ GD +YDPLFP G+GL
Sbjct: 217 ARTWFKSADQLPMNVGDKHYDPLFPFGFGL 128
Score = 100 bits (214), Expect = 8e-021
Identities = 42/93 (45%), Positives = 61/93 (65%)
Frame = -3 / -3
Query: 589 TLGTSILEAIQELVGVQTEVVYEKCPTEAMIETGGFSYAVVVVGEVPYAEWTGDRTDLSI 410
T GT+IL AI+ V TEVV+ + P A +++G + YA+VVVGE PYAE GD +L+I
Sbjct: 595 TAGTTILSAIKSTVDPSTEVVFSENPDSAAVDSGKYDYAIVVVGEPPYAETFGDNLNLTI 416
Query: 409 PFNGSDLIIRVASKIPTLVIVISGRPLIIESQV 311
P G +I V + +V++ISGRPL++E +
Sbjct: 415 PAPGPSVIQNVCKSVRCVVVLISGRPLVVEPYI 317
Score = 69.8 bits (146), Expect(3) = 2e-029
Identities = 33/66 (50%), Positives = 39/66 (59%)
Frame = +3 / +3
Query: 105 LRNIFSPYPTGNSGS*LESPASIGN*STDLHHVTGNVPTKS*SPKRQSVIPMPSLPGSQA 284
L ++ P P G SGS* SP IG+ S DL+HV + P *SP S P PS PGS A
Sbjct: 114 LASVVRPNPKGKSGS*CLSPTFIGSWSADLNHVRASFPENP*SPNSTSATPWPSEPGSHA 293
Query: 285 ATRASI 302
AT AS+
Sbjct: 294 ATNASM 311
Score = 66.6 bits (139), Expect(3) = 2e-029
Identities = 40/90 (44%), Positives = 49/90 (54%)
Frame = +3 / +3
Query: 321 SIINGLPDITITRVGILLATRMIRSEPLNGILRSVLSPVHSAYGTSPTTTTA*ENPPVSI 500
S +GLP+++ T LL T I P GI+R LSP SAYG SPTTT A* P+S
Sbjct: 327 STTSGLPEMSTTTHLTLLHTFWITEGPGAGIVRFRLSPNVSAYGGSPTTTMA*SYLPLST 506
Query: 501 IASVGHFSYTTSVCTPTNSCMASNMLVPRV 590
A G TTSV T +A ++VP V
Sbjct: 507 AALSGFSEKTTSVLGSTVDLIAERIVVPAV 596
Score = 40.9 bits (83), Expect(3) = 1e-030
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -3 / -2
Query: 652 DDIGYQCGGWTIAWHGDSG 596
+D+G QCGGWTI W G +G
Sbjct: 662 NDLGNQCGGWTITWQGQTG 606
Score = 30.9 bits (61), Expect(3) = 2e-029
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3 / +1
Query: 597 PLSPCHAIVQPPH*YPIS 650
P+ PCH +V PPH P S
Sbjct: 607 PVCPCHVMVHPPHWLPKS 660
Score = 24.4 bits (47), Expect(3) = 1e-030
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -3 / -1
Query: 685 AKRILVAGTHADDIG 641
A +ILVAG+HA+ +G
Sbjct: 696 AGKILVAGSHAERLG 652
>gb|AV920100.1|AV920100 AV920100 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9e08 3', mRNA sequence
Length = 682
Score = 109 bits (232), Expect(2) = 1e-029
Identities = 43/90 (47%), Positives = 58/90 (64%)
Frame = -3 / -1
Query: 388 IIRVASKIPTLVIVISGRPLIIESQVLEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTL 209
+I+ K V+V+ ++ + ++A VAAWLPGSEG G+ D LFGD+ F G L
Sbjct: 397 VIQNVCKSVRCVVVLISGRPLVVEPYISAMDAFVAAWLPGSEGQGVADVLFGDYGFSGKL 218
Query: 208 PVTWCKSVDQLPIDAGDSNYDPLFPVGYGL 119
TW KS DQLP++ GD +YDPLFP G+GL
Sbjct: 217 ARTWFKSADQLPMNVGDKHYDPLFPFGFGL 128
Score = 100 bits (214), Expect = 8e-021
Identities = 42/93 (45%), Positives = 61/93 (65%)
Frame = -3 / -1
Query: 589 TLGTSILEAIQELVGVQTEVVYEKCPTEAMIETGGFSYAVVVVGEVPYAEWTGDRTDLSI 410
T GT+IL AI+ V TEVV+ + P A +++G + YA+VVVGE PYAE GD +L+I
Sbjct: 595 TAGTTILSAIKSTVDPSTEVVFSENPDSAAVDSGKYDYAIVVVGEPPYAETFGDNLNLTI 416
Query: 409 PFNGSDLIIRVASKIPTLVIVISGRPLIIESQV 311
P G +I V + +V++ISGRPL++E +
Sbjct: 415 PAPGPSVIQNVCKSVRCVVVLISGRPLVVEPYI 317
Score = 69.8 bits (146), Expect(3) = 2e-030
Identities = 33/66 (50%), Positives = 39/66 (59%)
Frame = +3 / +3
Query: 105 LRNIFSPYPTGNSGS*LESPASIGN*STDLHHVTGNVPTKS*SPKRQSVIPMPSLPGSQA 284
L ++ P P G SGS* SP IG+ S DL+HV + P *SP S P PS PGS A
Sbjct: 114 LASVVRPNPKGKSGS*CLSPTFIGSWSADLNHVRASFPENP*SPNSTSATPWPSEPGSHA 293
Query: 285 ATRASI 302
AT AS+
Sbjct: 294 ATNASM 311
Score = 67.5 bits (141), Expect(3) = 2e-030
Identities = 40/91 (43%), Positives = 50/91 (54%)
Frame = +3 / +3
Query: 321 SIINGLPDITITRVGILLATRMIRSEPLNGILRSVLSPVHSAYGTSPTTTTA*ENPPVSI 500
S +GLP+++ T LL T I P GI+R LSP SAYG SPTTT A* P+S
Sbjct: 327 STTSGLPEMSTTTHLTLLHTFWITEGPGAGIVRFRLSPNVSAYGGSPTTTMA*SYLPLST 506
Query: 501 IASVGHFSYTTSVCTPTNSCMASNMLVPRVI 593
A G TTSV T +A ++VP V+
Sbjct: 507 AALSGFSEKTTSVLGSTVDLIAERIVVPAVL 599
Score = 43.2 bits (88), Expect(2) = 1e-029
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -3 / -1
Query: 652 DDIGYQCGGWTIAWHGDSG 596
DD+G QCGGWTI W G +G
Sbjct: 661 DDLGNQCGGWTITWQGQTG 605
Score = 33.1 bits (66), Expect(3) = 2e-030
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3 / +3
Query: 597 PLSPCHAIVQPPH*YPISSA 656
P+ PCH +V PPH P SS+
Sbjct: 606 PVCPCHVMVHPPHWLPKSSS 665
>gb|CA032659.1|CA032659 HX13N01r HX Hordeum vulgare subsp. vulgare cDNA clone HX13N01
5-PRIME, mRNA sequence
Length = 326
Score = 131 bits (281), Expect = 5e-030
Identities = 54/82 (65%), Positives = 63/82 (76%)
Frame = -3 / +1
Query: 841 GVFEHPFSDQSLLDIVGCKEHRLLAREAVRKSLVLLKNGKDQNKPFLPLAKDAKRILVAG 662
G+FE P++D SL +G +EHR LAREAVRKSLVLLKNGK P LPL K A +ILVAG
Sbjct: 25 GLFESPYADPSLAGELGKQEHRDLAREAVRKSLVLLKNGKSAYTPLLPLPKKAGKILVAG 204
Query: 661 THADDIGYQCGGWTIAWHGDSG 596
+HADD+G QCGGWTI W G +G
Sbjct: 205 SHADDLGNQCGGWTITWQGQTG 270
>gb|BU995937.1|BU995937 HM11N11r HM Hordeum vulgare subsp. vulgare cDNA clone HM11N11
5-PRIME, mRNA sequence
Length = 636
Score = 117 bits (250), Expect(2) = 3e-029
Identities = 46/90 (51%), Positives = 62/90 (68%)
Frame = -3 / +3
Query: 388 IIRVASKIPTLVIVISGRPLIIESQVLEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTL 209
+IR ++ V+V+ ++ L+ ++ALVAAWLPG+EG G+ D LFGDH F G L
Sbjct: 282 VIRKVCELVKCVVVLVSGRPLVVEPYLDTMDALVAAWLPGTEGHGVADVLFGDHGFSGKL 461
Query: 208 PVTWCKSVDQLPIDAGDSNYDPLFPVGYGL 119
P TW +SVDQLP++ GD YDPLFP G+GL
Sbjct: 462 PRTWVRSVDQLPMNYGDKLYDPLFPFGFGL 551
Score = 78.5 bits (165), Expect(3) = 5e-023
Identities = 37/66 (56%), Positives = 44/66 (66%)
Frame = +3 / -3
Query: 114 IFSPYPTGNSGS*LESPASIGN*STDLHHVTGNVPTKS*SPKRQSVIPMPSLPGSQAATR 293
+ SP P G SGS* SP +G+ STDL HV G+ P K SPK S P PS+PGSQAAT
Sbjct: 556 VVSPKPKGKSGS*SLSP*FMGSWSTDLTHVRGSFPEKPWSPKSTSATPWPSVPGSQAATS 377
Query: 294 ASIFSK 311
AS+ S+
Sbjct: 376 ASMVSR 359
Score = 40.9 bits (83), Expect(3) = 5e-023
Identities = 23/53 (43%), Positives = 30/53 (56%)
Frame = +3 / -3
Query: 321 SIINGLPDITITRVGILLATRMIRSEPLNGILRSVLSPVHSAYGTSPTTTTA* 479
S +G P+ T T ++ S P G++R LSP +AYG SPTTTTA*
Sbjct: 352 STTSGRPETRTTTHLTSSHTFLMTSGPGPGMVRLRLSPAVAAYGCSPTTTTA* 194
Score = 33.6 bits (67), Expect(2) = 3e-029
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -3 / +3
Query: 637 QCGGWTIAWHGDSG 596
QCGGWT +W G SG
Sbjct: 24 QCGGWTKSWQGQSG 65
Score = 25.8 bits (50), Expect(3) = 5e-023
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3 / -3
Query: 582 PRVIFPLSPCHAIVQPPH* 638
P + P PC +VQPPH*
Sbjct: 79 PVMPLPDWPCQDLVQPPH* 23
>gb|CA028903.1|CA028903 HZ63J10r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ63J10
5-PRIME, mRNA sequence
Length = 361
Score = 87.7 bits (185), Expect(2) = 1e-027
Identities = 36/88 (40%), Positives = 55/88 (62%)
Frame = -3 / +2
Query: 583 GTSILEAIQELVGVQTEVVYEKCPTEAMIETGGFSYAVVVVGEVPYAEWTGDRTDLSIPF 404
GT+ILEA++ V T VV+ + P +++GGFSYA+V VGE PY E GD +L+IP
Sbjct: 2 GTTILEAVKAAVDPSTVVVFAENPDAEFVKSGGFSYAIVAVGEHPYTETKGDNLNLTIPE 181
Query: 403 NGSDLIIRVASKIPTLVIVISGRPLIIE 320
G + V + ++ISGRP++++
Sbjct: 182 PGLSTVQAVCGGVRCATVLISGRPVVVQ 265
Score = 55.6 bits (115), Expect(2) = 1e-027
Identities = 21/36 (58%), Positives = 26/36 (72%)
Frame = -3 / +2
Query: 328 IIESQVLEKIEALVAAWLPGSEGMGITDCLFGDHDF 221
++ +L +ALVAAWLPGSEG G+TD LFGD F
Sbjct: 254 VVVQPLLAASDALVAAWLPGSEGQGVTDALFGDFGF 361
>gb|CA022582.1|CA022582 HZ43L07r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ43L07
5-PRIME, mRNA sequence
Length = 416
Score = 121 bits (259), Expect = 5e-027
Identities = 48/102 (47%), Positives = 68/102 (66%)
Frame = -3 / +3
Query: 775 LLAREAVRKSLVLLKNGKDQNKPFLPLAKDAKRILVAGTHADDIGYQCGGWTIAWHGDSG 596
L A + ++L + P LPL K A +ILVAG+HAD++GYQCGGWTI W GD+G
Sbjct: 111 LAREAARKSLVLLKNGKTSTDAPLLPLPKKAPKILVAGSHADNLGYQCGGWTIEWQGDTG 290
Query: 595 KITLGTSILEAIQELVGVQTEVVYEKCPTEAMIETGGFSYAV 470
+ T+GT+ILEA++ V T VV+ + P +++GGFSYA+
Sbjct: 291 RTTVGTTILEAVKAAVDPSTVVVFAENPDAEFVKSGGFSYAI 416
>gb|CA016117.1|CA016117 HV10I20u HV Hordeum vulgare subsp. vulgare cDNA clone HV10I20
3-PRIME, mRNA sequence
Length = 472
Score = 119 bits (254), Expect = 3e-026
Identities = 45/60 (75%), Positives = 52/60 (86%)
Frame = -3 / -2
Query: 298 EALVAAWLPGSEGMGITDCLFGDHDFVGTLPVTWCKSVDQLPIDAGDSNYDPLFPVGYGL 119
+ALVAAWLPGSEG GITD LFGD+ F G LP TW KSVDQLP++ GD++YDPLFP+GYGL
Sbjct: 465 DALVAAWLPGSEGQGITDALFGDYGFTGKLPRTWFKSVDQLPMNVGDAHYDPLFPLGYGL 286
>gb|AV930613.1|AV930613 AV930613 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd24f16 3', mRNA sequence
Length = 599
Score = 109 bits (232), Expect(2) = 1e-023
Identities = 43/90 (47%), Positives = 58/90 (64%)
Frame = -3 / -1
Query: 388 IIRVASKIPTLVIVISGRPLIIESQVLEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTL 209
+I+ K V+V+ ++ + ++A VAAWLPGSEG G+ D LFGD+ F G L
Sbjct: 362 VIQNVCKSVRCVVVLISGRPLVVEPYISAMDAFVAAWLPGSEGQGVADVLFGDYGFSGKL 183
Query: 208 PVTWCKSVDQLPIDAGDSNYDPLFPVGYGL 119
TW KS DQLP++ GD +YDPLFP G+GL
Sbjct: 182 ARTWFKSADQLPMNVGDKHYDPLFPFGFGL 93
Score = 100 bits (214), Expect = 8e-021
Identities = 42/93 (45%), Positives = 61/93 (65%)
Frame = -3 / -1
Query: 589 TLGTSILEAIQELVGVQTEVVYEKCPTEAMIETGGFSYAVVVVGEVPYAEWTGDRTDLSI 410
T GT+IL AI+ V TEVV+ + P A +++G + YA+VVVGE PYAE GD +L+I
Sbjct: 560 TAGTTILSAIKSTVDPSTEVVFSENPDSAAVDSGKYDYAIVVVGEPPYAETFGDNLNLTI 381
Query: 409 PFNGSDLIIRVASKIPTLVIVISGRPLIIESQV 311
P G +I V + +V++ISGRPL++E +
Sbjct: 380 PAPGPSVIQNVCKSVRCVVVLISGRPLVVEPYI 282
Score = 69.8 bits (146), Expect(2) = 7e-026
Identities = 33/66 (50%), Positives = 39/66 (59%)
Frame = +3 / +1
Query: 105 LRNIFSPYPTGNSGS*LESPASIGN*STDLHHVTGNVPTKS*SPKRQSVIPMPSLPGSQA 284
L ++ P P G SGS* SP IG+ S DL+HV + P *SP S P PS PGS A
Sbjct: 79 LASVVRPNPKGKSGS*CLSPTFIGSWSADLNHVRASFPENP*SPNSTSATPWPSEPGSHA 258
Query: 285 ATRASI 302
AT AS+
Sbjct: 259 ATNASM 276
Score = 67.5 bits (141), Expect(2) = 7e-026
Identities = 40/91 (43%), Positives = 50/91 (54%)
Frame = +3 / +1
Query: 321 SIINGLPDITITRVGILLATRMIRSEPLNGILRSVLSPVHSAYGTSPTTTTA*ENPPVSI 500
S +GLP+++ T LL T I P GI+R LSP SAYG SPTTT A* P+S
Sbjct: 292 STTSGLPEMSTTTHLTLLHTFWITEGPGAGIVRFRLSPNVSAYGGSPTTTMA*SYLPLST 471
Query: 501 IASVGHFSYTTSVCTPTNSCMASNMLVPRVI 593
A G TTSV T +A ++VP V+
Sbjct: 472 AALSGFSEKTTSVLGSTVDLIAERIVVPAVL 564
Score = 23.1 bits (44), Expect(2) = 1e-023
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = -3 / -1
Query: 625 WTIAWHGDSG 596
WTI W G +G
Sbjct: 599 WTITWQGQTG 570
>gb|BI951410.1|BI951410 HVSMEl0025N13f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0025N13f, mRNA sequence
Length = 581
Score = 116 bits (249), Expect = 1e-025
Identities = 50/109 (45%), Positives = 69/109 (63%)
Frame = -3 / +3
Query: 775 LLAREAVRKSLVLLKNGKDQNKPFLPLAKDAKRILVAGTHADDIGYQCGGWTIAWHGDSG 596
L A + ++L + P LPL K A +ILVAG+HAD++GYQCGGWTI W GD+G
Sbjct: 117 LAREAARKSLVLLKNGKTSTDAPLLPLPKKAPKILVAGSHADNLGYQCGGWTIEWQGDTG 296
Query: 595 KITLGTSILEAIQELVGVQTEVVYEKCPTEAMIETGGFSYAVVVVGEVP 449
+ T+GT+ILEA++ V T+ V+ P + +GG SYA+V VG P
Sbjct: 297 RTTVGTTILEAVKAAVDPFTDEVFT*NPDAESLNSGGGSYAIVGVG*PP 443
Score = 86.3 bits (182), Expect(2) = 7e-026
Identities = 42/84 (50%), Positives = 56/84 (66%)
Frame = +3 / -2
Query: 459 PTTTTA*ENPPVSIIASVGHFSYTTSVCTPTNSCMASNMLVPRVIFPLSPCHAIVQPPH* 638
PT T A*+ PP+ ++ G T+SV T + ASNM+VP V+ P+SPCH++VQPPH
Sbjct: 433 PTPTMA*DPPPLLRDSASGF*VNTSSVKGSTAAFTASNMVVPTVVRPVSPCHSMVQPPHW 254
Query: 639 YPISSACVPATSILFASLANGRNG 710
P SA +PAT IL A L +GR+G
Sbjct: 253 *PRLSAWLPATRILGAFLGSGRSG 182
Score = 51.0 bits (105), Expect(2) = 7e-026
Identities = 25/54 (46%), Positives = 30/54 (55%)
Frame = +3 / -2
Query: 723 LPFFRSTKDLRTASRASNRCSLQPTMSSRDWSENGCSNTPEINLTLRIRLVRDS 884
LPFF ST D AS A + CS P+ S+ S G S P +NLT RIR+ S
Sbjct: 166 LPFFSSTSDFLAASLAKSLCSCFPSCSAMAGSA*GFSKRPMVNLTRRIRVTASS 5
>gb|CB882092.1|CB882092 HM11N11w HM Hordeum vulgare subsp. vulgare cDNA clone HM11N11
3-PRIME, mRNA sequence
Length = 655
Score = 117 bits (250), Expect = 9e-026
Identities = 46/90 (51%), Positives = 62/90 (68%)
Frame = -3 / -3
Query: 388 IIRVASKIPTLVIVISGRPLIIESQVLEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTL 209
+IR ++ V+V+ ++ L+ ++ALVAAWLPG+EG G+ D LFGDH F G L
Sbjct: 473 VIRKVCELVKCVVVLVSGRPLVVEPYLDTMDALVAAWLPGTEGHGVADVLFGDHGFSGKL 294
Query: 208 PVTWCKSVDQLPIDAGDSNYDPLFPVGYGL 119
P TW +SVDQLP++ GD YDPLFP G+GL
Sbjct: 293 PRTWVRSVDQLPMNYGDKLYDPLFPFGFGL 204
>gb|AV911128.1|AV911128 AV911128 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak12b24 3', mRNA sequence
Length = 609
Score = 110 bits (234), Expect = 1e-023
Identities = 43/90 (47%), Positives = 58/90 (64%)
Frame = -3 / -3
Query: 388 IIRVASKIPTLVIVISGRPLIIESQVLEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTL 209
+I+ K V+V+ ++ + ++A VAAWLPGSEG G+ D LFGD+ F G L
Sbjct: 400 VIQTVCKSVRCVVVLISGRPLVLEPYISAMDAFVAAWLPGSEGQGVADVLFGDYGFSGKL 221
Query: 208 PVTWCKSVDQLPIDAGDSNYDPLFPVGYGL 119
TW KS DQLP++ GD +YDPLFP G+GL
Sbjct: 220 ARTWFKSADQLPMNVGDKHYDPLFPFGFGL 131
Score = 69.8 bits (146), Expect(2) = 1e-025
Identities = 33/66 (50%), Positives = 39/66 (59%)
Frame = +3 / +3
Query: 105 LRNIFSPYPTGNSGS*LESPASIGN*STDLHHVTGNVPTKS*SPKRQSVIPMPSLPGSQA 284
L ++ P P G SGS* SP IG+ S DL+HV + P *SP S P PS PGS A
Sbjct: 117 LASVVRPNPKGKSGS*CLSPTFIGSWSADLNHVRASFPENP*SPNSTSATPWPSEPGSHA 296
Query: 285 ATRASI 302
AT AS+
Sbjct: 297 ATNASM 314
Score = 67.0 bits (140), Expect(2) = 1e-025
Identities = 40/91 (43%), Positives = 50/91 (54%)
Frame = +3 / +3
Query: 321 SIINGLPDITITRVGILLATRMIRSEPLNGILRSVLSPVHSAYGTSPTTTTA*ENPPVSI 500
S +GLP+++ T LL T I P GI+R LSP SAYG SPTTT A* P+S
Sbjct: 330 SSTSGLPEMSTTTHLTLLHTVWITEGPGAGIVRFRLSPNVSAYGGSPTTTMA*SYLPLST 509
Query: 501 IASVGHFSYTTSVCTPTNSCMASNMLVPRVI 593
A G TTSV T +A ++VP V+
Sbjct: 510 AALSGFSEKTTSVLGSTVDLIAERIVVPAVL 602
>gb|AL503553.1|AL503553 AL503553 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02J07T 5', mRNA sequence
Length = 700
Score = 91.8 bits (194), Expect(3) = 1e-025
Identities = 41/62 (66%), Positives = 48/62 (77%)
Frame = -3 / +3
Query: 868 RILRVKFISGVFEHPFSDQSLLDIVGCKEHRLLAREAVRKSLVLLKNGKDQNKPFLPLAK 689
RILRVKF G+FE P++D SL+ +G +EHR LAREAVRKSLVLLKNGK + P LPL K
Sbjct: 414 RILRVKFTMGLFESPYADPSLVGELGKQEHRDLAREAVRKSLVLLKNGKSASTPLLPLPK 593
Query: 688 DA 683
A
Sbjct: 594 KA 599
Score = 38.6 bits (78), Expect(3) = 1e-025
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = -3 / +1
Query: 679 RILVAGTHADDIGYQCG 629
RILVAG+HADD+G QCG
Sbjct: 604 RILVAGSHADDLGNQCG 654
Score = 23.5 bits (45), Expect(3) = 1e-025
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -3 / +2
Query: 631 GGWTIAWHGD 602
GGWTI W D
Sbjct: 653 GGWTITWPRD 682
>gb|BF627275.3|BF627275 HVSMEb0004G19f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0004G19f, mRNA sequence
Length = 636
Score = 109 bits (232), Expect = 3e-023
Identities = 43/90 (47%), Positives = 58/90 (64%)
Frame = -3 / +3
Query: 388 IIRVASKIPTLVIVISGRPLIIESQVLEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTL 209
+I+ K V+V+ ++ + ++A VAAWLPGSEG G+ D LFGD+ F G L
Sbjct: 204 VIQNVCKSVRCVVVLISGRPLVVEPYISAMDAFVAAWLPGSEGQGVADVLFGDYGFSGKL 383
Query: 208 PVTWCKSVDQLPIDAGDSNYDPLFPVGYGL 119
TW KS DQLP++ GD +YDPLFP G+GL
Sbjct: 384 ARTWFKSADQLPMNVGDKHYDPLFPFGFGL 473
Score = 69.8 bits (146), Expect(2) = 3e-025
Identities = 33/66 (50%), Positives = 39/66 (59%)
Frame = +3 / -3
Query: 105 LRNIFSPYPTGNSGS*LESPASIGN*STDLHHVTGNVPTKS*SPKRQSVIPMPSLPGSQA 284
L ++ P P G SGS* SP IG+ S DL+HV + P *SP S P PS PGS A
Sbjct: 487 LASVVRPNPKGKSGS*CLSPTFIGSWSADLNHVRASFPENP*SPNSTSATPWPSEPGSHA 308
Query: 285 ATRASI 302
AT AS+
Sbjct: 307 ATNASM 290
Score = 65.2 bits (136), Expect(2) = 3e-025
Identities = 39/88 (44%), Positives = 48/88 (54%)
Frame = +3 / -3
Query: 321 SIINGLPDITITRVGILLATRMIRSEPLNGILRSVLSPVHSAYGTSPTTTTA*ENPPVSI 500
S +GLP+++ T LL T I P GI+R LSP SAYG SPTTT A* P+S
Sbjct: 274 STTSGLPEMSTTTHLTLLHTFWITEGPGAGIVRFRLSPNVSAYGGSPTTTMA*SYLPLST 95
Query: 501 IASVGHFSYTTSVCTPTNSCMASNMLVP 584
A G TTSV T +A ++VP
Sbjct: 94 AALSGFSEKTTSVLGSTVDLIAERIVVP 11
>gb|AV909243.1|AV909243 AV909243 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak12b24 5', mRNA sequence
Length = 655
Score = 110 bits (234), Expect = 1e-023
Identities = 43/90 (47%), Positives = 58/90 (64%)
Frame = -3 / +1
Query: 388 IIRVASKIPTLVIVISGRPLIIESQVLEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTL 209
+I+ K V+V+ ++ + ++A VAAWLPGSEG G+ D LFGD+ F G L
Sbjct: 235 VIQTVCKSVRCVVVLISGRPLVLEPYISAMDAFVAAWLPGSEGQGVADVLFGDYGFSGKL 414
Query: 208 PVTWCKSVDQLPIDAGDSNYDPLFPVGYGL 119
TW KS DQLP++ GD +YDPLFP G+GL
Sbjct: 415 ARTWFKSADQLPMNVGDKHYDPLFPFGFGL 504
Score = 69.8 bits (146), Expect(2) = 5e-025
Identities = 33/66 (50%), Positives = 39/66 (59%)
Frame = +3 / -3
Query: 105 LRNIFSPYPTGNSGS*LESPASIGN*STDLHHVTGNVPTKS*SPKRQSVIPMPSLPGSQA 284
L ++ P P G SGS* SP IG+ S DL+HV + P *SP S P PS PGS A
Sbjct: 518 LASVVRPNPKGKSGS*CLSPTFIGSWSADLNHVRASFPENP*SPNSTSATPWPSEPGSHA 339
Query: 285 ATRASI 302
AT AS+
Sbjct: 338 ATNASM 321
Score = 64.8 bits (135), Expect(2) = 5e-025
Identities = 39/88 (44%), Positives = 48/88 (54%)
Frame = +3 / -3
Query: 321 SIINGLPDITITRVGILLATRMIRSEPLNGILRSVLSPVHSAYGTSPTTTTA*ENPPVSI 500
S +GLP+++ T LL T I P GI+R LSP SAYG SPTTT A* P+S
Sbjct: 305 SSTSGLPEMSTTTHLTLLHTVWITEGPGAGIVRFRLSPNVSAYGGSPTTTMA*SYLPLST 126
Query: 501 IASVGHFSYTTSVCTPTNSCMASNMLVP 584
A G TTSV T +A ++VP
Sbjct: 125 AALSGFSEKTTSVLGSTVDLIAERIVVP 42
>gb|BQ468807.1|BQ468807 HM02G11r HM Hordeum vulgare subsp. vulgare cDNA clone HM02G11
5-PRIME, mRNA sequence
Length = 558
Score = 114 bits (244), Expect = 6e-025
Identities = 45/90 (50%), Positives = 62/90 (68%)
Frame = -3 / +1
Query: 388 IIRVASKIPTLVIVISGRPLIIESQVLEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTL 209
+IR ++ V+V+ ++ L+ ++ALVAAWLPG+EG G+ D LFGD+ F G L
Sbjct: 223 VIRKVCELVKCVVVLVSGRPLVVEPYLDTMDALVAAWLPGTEGHGVADVLFGDYGFSGKL 402
Query: 208 PVTWCKSVDQLPIDAGDSNYDPLFPVGYGL 119
P TW +SVDQLP++ GD YDPLFP G+GL
Sbjct: 403 PRTWVRSVDQLPMNYGDKLYDPLFPFGFGL 492
>gb|BQ661201.1|BQ661201 HM02G11u HM Hordeum vulgare subsp. vulgare cDNA clone HM02G11
3-PRIME, mRNA sequence
Length = 552
Score = 114 bits (244), Expect = 6e-025
Identities = 45/90 (50%), Positives = 62/90 (68%)
Frame = -3 / -3
Query: 388 IIRVASKIPTLVIVISGRPLIIESQVLEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTL 209
+IR ++ V+V+ ++ L+ ++ALVAAWLPG+EG G+ D LFGD+ F G L
Sbjct: 502 VIRKVCELVKCVVVLVSGRPLVVEPYLDTMDALVAAWLPGTEGHGVADVLFGDYGFSGKL 323
Query: 208 PVTWCKSVDQLPIDAGDSNYDPLFPVGYGL 119
P TW +SVDQLP++ GD YDPLFP G+GL
Sbjct: 322 PRTWVRSVDQLPMNYGDKLYDPLFPFGFGL 233
>gb|CB881387.1|CB881387 HM09K13w HM Hordeum vulgare subsp. vulgare cDNA clone HM09K13
3-PRIME, mRNA sequence
Length = 638
Score = 114 bits (244), Expect = 6e-025
Identities = 45/90 (50%), Positives = 62/90 (68%)
Frame = -3 / -2
Query: 388 IIRVASKIPTLVIVISGRPLIIESQVLEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTL 209
+IR ++ V+V+ ++ L+ ++ALVAAWLPG+EG G+ D LFGD+ F G L
Sbjct: 424 VIRKVCELVKCVVVLVSGRPLVVEPYLDTMDALVAAWLPGTEGHGVADVLFGDYGFSGKL 245
Query: 208 PVTWCKSVDQLPIDAGDSNYDPLFPVGYGL 119
P TW +SVDQLP++ GD YDPLFP G+GL
Sbjct: 244 PRTWVRSVDQLPMNYGDKLYDPLFPFGFGL 155
>gb|CA000004.1|CA000004 HS16F17u HS Hordeum vulgare subsp. vulgare cDNA clone HS16F17
3-PRIME, mRNA sequence
Length = 465
Score = 114 bits (243), Expect = 8e-025
Identities = 44/70 (62%), Positives = 53/70 (75%)
Frame = -3 / -2
Query: 328 IIESQVLEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTLPVTWCKSVDQLPIDAGDSNY 149
++ +L ALVAAWLPGSEG G+TD LFGD F G LP TW KSVDQLP++ GD++Y
Sbjct: 461 VVVQPLLXASNALVAAWLPGSEGQGVTDALFGDFGFTGRLPRTWFKSVDQLPMNVGDAHY 282
Query: 148 DPLFPVGYGL 119
DPLF +GYGL
Sbjct: 281 DPLFRLGYGL 252
>gb|BU999923.1|BU999923 HS16P05u HS Hordeum vulgare subsp. vulgare cDNA clone HS16P05
3-PRIME, mRNA sequence
Length = 446
Score = 113 bits (242), Expect = 1e-024
Identities = 44/65 (67%), Positives = 52/65 (80%)
Frame = -3 / -1
Query: 313 VLEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTLPVTWCKSVDQLPIDAGDSNYDPLFP 134
+L +ALVAAWLPGSEG G+TD LFGD F G LP TW KSVDQLP++ GD++YDPLF
Sbjct: 446 LLAASDALVAAWLPGSEGQGVTDALFGDFGFTGRLPRTWFKSVDQLPMNVGDAHYDPLFR 267
Query: 133 VGYGL 119
+GYGL
Sbjct: 266 LGYGL 252
>gb|BQ663194.1|BQ663194 HU01E02w HU Hordeum vulgare subsp. vulgare cDNA clone HU01E02
3-PRIME, mRNA sequence
Length = 427
Score = 110 bits (235), Expect = 1e-023
Identities = 42/59 (71%), Positives = 48/59 (81%)
Frame = -3 / -1
Query: 295 ALVAAWLPGSEGMGITDCLFGDHDFVGTLPVTWCKSVDQLPIDAGDSNYDPLFPVGYGL 119
ALV AWLPGSEG G+TD LFGD F G LP TW KSVDQLP++ GD++YDPLF +GYGL
Sbjct: 427 ALVTAWLPGSEGQGVTDALFGDFGFTGRLPRTWFKSVDQLPMNVGDAHYDPLFRLGYGL 251
>gb|AL502756.1|AL502756 AL502756 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08K03u 3', mRNA sequence
Length = 552
Score = 109 bits (232), Expect = 3e-023
Identities = 43/90 (47%), Positives = 58/90 (64%)
Frame = -3 / -3
Query: 388 IIRVASKIPTLVIVISGRPLIIESQVLEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTL 209
+I+ K V+V+ ++ + ++A VAAWLPGSEG G+ D LFGD+ F G L
Sbjct: 484 VIQNVCKSVRCVVVLISGRPLVVEPYISAMDAFVAAWLPGSEGQGVADVLFGDYGFSGKL 305
Query: 208 PVTWCKSVDQLPIDAGDSNYDPLFPVGYGL 119
TW KS DQLP++ GD +YDPLFP G+GL
Sbjct: 304 ARTWFKSADQLPMNVGDKHYDPLFPFGFGL 215
>gb|BQ657885.1|BQ657885 HA06J20u HA Hordeum vulgare subsp. vulgare cDNA clone HA06J20
3-PRIME, mRNA sequence
Length = 454
Score = 109 bits (232), Expect = 3e-023
Identities = 43/90 (47%), Positives = 58/90 (64%)
Frame = -3 / -1
Query: 388 IIRVASKIPTLVIVISGRPLIIESQVLEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTL 209
+I+ K V+V+ ++ + ++A VAAWLPGSEG G+ D LFGD+ F G L
Sbjct: 406 VIQNVCKSVRCVVVLISGRPLVVEPYISAMDAFVAAWLPGSEGQGVADVLFGDYGFSGKL 227
Query: 208 PVTWCKSVDQLPIDAGDSNYDPLFPVGYGL 119
TW KS DQLP++ GD +YDPLFP G+GL
Sbjct: 226 ARTWFKSADQLPMNVGDKHYDPLFPFGFGL 137
>gb|BQ662134.1|BQ662134 HR01L02u HR Hordeum vulgare subsp. vulgare cDNA clone HR01L02
3-PRIME, mRNA sequence
Length = 457
Score = 109 bits (232), Expect = 3e-023
Identities = 43/90 (47%), Positives = 58/90 (64%)
Frame = -3 / -2
Query: 388 IIRVASKIPTLVIVISGRPLIIESQVLEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTL 209
+I+ K V+V+ ++ + ++A VAAWLPGSEG G+ D LFGD+ F G L
Sbjct: 411 VIQNVCKSVRCVVVLISGRPLVVEPYISAMDAFVAAWLPGSEGQGVADVLFGDYGFSGKL 232
Query: 208 PVTWCKSVDQLPIDAGDSNYDPLFPVGYGL 119
TW KS DQLP++ GD +YDPLFP G+GL
Sbjct: 231 ARTWFKSADQLPMNVGDKHYDPLFPFGFGL 142
>gb|BQ663930.1|BQ663930 HU04K15u HU Hordeum vulgare subsp. vulgare cDNA clone HU04K15
3-PRIME, mRNA sequence
Length = 582
Score = 109 bits (232), Expect = 3e-023
Identities = 43/90 (47%), Positives = 58/90 (64%)
Frame = -3 / -1
Query: 388 IIRVASKIPTLVIVISGRPLIIESQVLEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTL 209
+I+ K V+V+ ++ + ++A VAAWLPGSEG G+ D LFGD+ F G L
Sbjct: 411 VIQNVCKSVRCVVVLISGRPLVVEPYISAMDAFVAAWLPGSEGQGVADVLFGDYGFSGKL 232
Query: 208 PVTWCKSVDQLPIDAGDSNYDPLFPVGYGL 119
TW KS DQLP++ GD +YDPLFP G+GL
Sbjct: 231 ARTWFKSADQLPMNVGDKHYDPLFPFGFGL 142
Score = 69.8 bits (146), Expect(2) = 2e-021
Identities = 33/66 (50%), Positives = 39/66 (59%)
Frame = +3 / +2
Query: 105 LRNIFSPYPTGNSGS*LESPASIGN*STDLHHVTGNVPTKS*SPKRQSVIPMPSLPGSQA 284
L ++ P P G SGS* SP IG+ S DL+HV + P *SP S P PS PGS A
Sbjct: 128 LASVVRPNPKGKSGS*CLSPTFIGSWSADLNHVRASFPENP*SPNSTSATPWPSEPGSHA 307
Query: 285 ATRASI 302
AT AS+
Sbjct: 308 ATNASM 325
Score = 52.4 bits (108), Expect(2) = 2e-021
Identities = 31/65 (47%), Positives = 37/65 (56%)
Frame = +3 / +2
Query: 321 SIINGLPDITITRVGILLATRMIRSEPLNGILRSVLSPVHSAYGTSPTTTTA*ENPPVSI 500
S +GLP+++ T LL T I P GI+R LSP SAYG SPTTT A* P+S
Sbjct: 341 STTSGLPEMSTTTHLTLLHTFWITEGPGAGIVRFRLSPNVSAYGGSPTTTMA*SYLPLST 520
Query: 501 IASVG 515
A G
Sbjct: 521 AALSG 535
>gb|BM374002.2|BM374002 EBma03_SQ003_F17_R maternal, 8 DPA, no treatment, cv Optic, EBma03
Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ003_F17 5', mRNA sequence
Length = 533
Score = 109 bits (232), Expect = 3e-023
Identities = 43/90 (47%), Positives = 58/90 (64%)
Frame = -3 / +2
Query: 388 IIRVASKIPTLVIVISGRPLIIESQVLEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTL 209
+I+ K V+V+ ++ + ++A VAAWLPGSEG G+ D LFGD+ F G L
Sbjct: 113 VIQNVCKSVRCVVVLISGRPLVVEPYISAMDAFVAAWLPGSEGQGVADVLFGDYGFSGKL 292
Query: 208 PVTWCKSVDQLPIDAGDSNYDPLFPVGYGL 119
TW KS DQLP++ GD +YDPLFP G+GL
Sbjct: 293 ARTWFKSADQLPMNVGDKHYDPLFPFGFGL 382
Score = 69.8 bits (146), Expect(2) = 8e-021
Identities = 33/66 (50%), Positives = 39/66 (59%)
Frame = +3 / -3
Query: 105 LRNIFSPYPTGNSGS*LESPASIGN*STDLHHVTGNVPTKS*SPKRQSVIPMPSLPGSQA 284
L ++ P P G SGS* SP IG+ S DL+HV + P *SP S P PS PGS A
Sbjct: 396 LASVVRPNPKGKSGS*CLSPTFIGSWSADLNHVRASFPENP*SPNSTSATPWPSEPGSHA 217
Query: 285 ATRASI 302
AT AS+
Sbjct: 216 ATNASM 199
Score = 50.6 bits (104), Expect(2) = 8e-021
Identities = 29/59 (49%), Positives = 35/59 (59%)
Frame = +3 / -3
Query: 321 SIINGLPDITITRVGILLATRMIRSEPLNGILRSVLSPVHSAYGTSPTTTTA*ENPPVS 497
S +GLP+++ T LL T I P GI+R LSP SAYG SPTTT A* P+S
Sbjct: 183 STTSGLPEMSTTTHLTLLHTFWITEGPGAGIVRFRLSPNVSAYGGSPTTTMA*SYLPLS 7
>gb|BU976239.1|BU976239 HA03G04u HA Hordeum vulgare subsp. vulgare cDNA clone HA03G04
3-PRIME, mRNA sequence
Length = 456
Score = 109 bits (232), Expect = 3e-023
Identities = 43/90 (47%), Positives = 58/90 (64%)
Frame = -3 / -2
Query: 388 IIRVASKIPTLVIVISGRPLIIESQVLEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTL 209
+I+ K V+V+ ++ + ++A VAAWLPGSEG G+ D LFGD+ F G L
Sbjct: 410 VIQNVCKSVRCVVVLISGRPLVVEPYISAMDAFVAAWLPGSEGQGVADVLFGDYGFSGKL 231
Query: 208 PVTWCKSVDQLPIDAGDSNYDPLFPVGYGL 119
TW KS DQLP++ GD +YDPLFP G+GL
Sbjct: 230 ARTWFKSADQLPMNVGDKHYDPLFPFGFGL 141
>gb|BU977332.1|BU977332 HA11D20u HA Hordeum vulgare subsp. vulgare cDNA clone HA11D20
3-PRIME, mRNA sequence
Length = 439
Score = 109 bits (232), Expect = 3e-023
Identities = 43/90 (47%), Positives = 58/90 (64%)
Frame = -3 / -2
Query: 388 IIRVASKIPTLVIVISGRPLIIESQVLEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTL 209
+I+ K V+V+ ++ + ++A VAAWLPGSEG G+ D LFGD+ F G L
Sbjct: 411 VIQNVCKSVRCVVVLISGRPLVVEPYISAMDAFVAAWLPGSEGQGVADVLFGDYGFSGKL 232
Query: 208 PVTWCKSVDQLPIDAGDSNYDPLFPVGYGL 119
TW KS DQLP++ GD +YDPLFP G+GL
Sbjct: 231 ARTWFKSADQLPMNVGDKHYDPLFPFGFGL 142
>gb|BU983489.1|BU983489 HA29O13r HA Hordeum vulgare subsp. vulgare cDNA clone HA29O13
5-PRIME, mRNA sequence
Length = 447
Score = 109 bits (232), Expect = 3e-023
Identities = 43/90 (47%), Positives = 58/90 (64%)
Frame = -3 / +3
Query: 388 IIRVASKIPTLVIVISGRPLIIESQVLEKIEALVAAWLPGSEGMGITDCLFGDHDFVGTL 209
+I+ K V+V+ ++ + ++A VAAWLPGSEG G+ D LFGD+ F G L
Sbjct: 84 VIQNVCKSVRCVVVLISGRPLVVEPYISAMDAFVAAWLPGSEGQGVADVLFGDYGFSGKL 263
Query: 208 PVTWCKSVDQLPIDAGDSNYDPLFPVGYGL 119
TW KS DQLP++ GD +YDPLFP G+GL
Sbjct: 264 ARTWFKSADQLPMNVGDKHYDPLFPFGFGL 353
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 441,128,915
Number of Sequences: 312970
Number of extensions: 7293475
Number of successful extensions: 50090
Number of sequences better than 1.0e-020: 84
length of database: 58,378,179
effective HSP length: 52
effective length of database: 42,103,739
effective search space used: 10189104838
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)