TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBJ23f06.xg.2.1
(683 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN820072.1|CN820072 HRO4410_G07_M14ZS5 Lib AA069E1X Aven... 172 6e-044
>gb|CN820072.1|CN820072 HRO4410_G07_M14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4410_G07_M14, mRNA
sequence
Length = 798
Score = 172 bits (370), Expect = 6e-044
Identities = 65/92 (70%), Positives = 75/92 (81%)
Frame = +1 / +2
Query: 406 KQTYYARFGTYLEHDIGHHTSGDHQXLLLAYVGIPRYEGPEVDPTIXTHDAKDLYKAGEX 585
+QTYY++FGTYLEHDI + TSGDHQ +LLAY+GIPRYEGPEVDPTI THDAKDLYKAGE
Sbjct: 11 RQTYYSKFGTYLEHDISYQTSGDHQKILLAYLGIPRYEGPEVDPTIVTHDAKDLYKAGEK 190
Query: 586 RLGTDEXXXXXXFTXRXWAHXASXSSAXHHMY 681
+ GTDE FT R WAH A+ +SA HHM+
Sbjct: 191 KFGTDEKTFIRIFTERSWAHMAAVASAYHHMF 286
Score = 105 bits (224), Expect = 8e-024
Identities = 46/79 (58%), Positives = 53/79 (67%)
Frame = -3 / -3
Query: 678 HMMVXRRXRCXVCPAAXSEXAXXXXLIRTEPXLTSFVQILCIMCXNGRINLRTFVAWNPH 499
H++V R C VCPAA SE LI E LTSFVQ+LCIMC INLR F+AWN
Sbjct: 283 HVVVSRSNSCHVCPAAFSEDTDEGFLICAELLLTSFVQVLCIMCHYSGINLRPFIAWNAE 104
Query: 498 IGK*KLLVIARCVVTNVML 442
IG * LL+IA C++TNVML
Sbjct: 103 IG**DLLMIAACLITNVML 47
Score = 97.7 bits (207), Expect = 2e-021
Identities = 52/90 (57%), Positives = 57/90 (63%)
Frame = -1 / -1
Query: 671 WXADXXDAXCAQXRXVXXXXXXXXXXXXXXXPALYKSFASCVXMVGSTSGPS*RGIPT*A 492
W A+ A CAQ R V PALY+SFASCV +VGSTSGPS*RG+P *A
Sbjct: 276 W*AEATAAMCAQLRSVKIRMKVFSSVPNFFSPALYRSFASCVTIVGSTSGPS*RGMPR*A 97
Query: 491 SKSXW*SPDVW*PMSCSR*VPNLA**VCFI 402
SK *SP V * MSCSR*VPNL * VC +
Sbjct: 96 SKIF**SPLV**LMSCSR*VPNLE*YVCLV 7
Score = 97.3 bits (206), Expect = 2e-021
Identities = 47/92 (51%), Positives = 54/92 (58%)
Frame = -2 / -2
Query: 679 TYDGXQTXQMPXVPSXVQ*XRXXXXXHPYRAFXHQLCTNPLHHVSQW*DQPQDLRSVESP 500
T G Q Q+P VPS VQ* H R HQLCT PLHHVS DQPQ L SVE
Sbjct: 284 TCGGKQKQQLPCVPSCVQ*RYG*RFSHLCRTSSHQLCTGPLHHVSL*WDQPQALHSVECR 105
Query: 499 HRQVKAXGDRQMCGDQCHAQDKYQI*HNKSVS 404
R V++ DR++ + CHAQDKYQ +N S S
Sbjct: 104 DRLVRSSDDRRLFDN*CHAQDKYQTWNNMSAS 9
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 7,137,251
Number of Sequences: 8143
Number of extensions: 93126
Number of successful extensions: 790
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 226713985
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)