TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3023930.2.1
(544 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815151.1|CN815151 HRO4506_D10_G20ZS5 Lib AA071E1X Aven... 100 3e-023
gb|CN818949.1|CN818949 HRO4474_G09_N18ZS5 Lib AA070E1X Aven... 98 9e-022
>gb|CN815151.1|CN815151 HRO4506_D10_G20ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4506_D10_G20, mRNA sequence
Length = 599
Score = 99.6 bits (211), Expect(2) = 3e-023
Identities = 42/90 (46%), Positives = 59/90 (65%)
Frame = +1 / +1
Query: 139 STYLRIKVVNFGNQAVDLNISVAELATGVKKSGSKQTVLTSSSPLDENSFQQPEKVAPVS 318
+++LR+K+VNFG+ V L IS L + GS TVLTSS+ +DENSF P KV PV+
Sbjct: 46 NSFLRVKIVNFGSDQVSLTISATGLQASINTLGSNATVLTSSNVMDENSFSNPNKVVPVT 225
Query: 319 SPMANAGQQMGASVGPYSLTSFDLLLEPSK 408
S + NA +QM ++ +S +SFDL L S+
Sbjct: 226 SQLRNAAEQMQVTLPAHSFSSFDLALAQSQ 315
Score = 23.1 bits (44), Expect(2) = 3e-023
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1 / +1
Query: 97 LVASAITWQNAKDKSTYLRI 156
L ASAITWQ++ + ++I
Sbjct: 10 LAASAITWQDSGNSFLRVKI 69
>gb|CN818949.1|CN818949 HRO4474_G09_N18ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4474_G09_N18, mRNA sequence
Length = 495
Score = 98.2 bits (208), Expect = 9e-022
Identities = 41/90 (45%), Positives = 59/90 (65%)
Frame = +1 / +3
Query: 139 STYLRIKVVNFGNQAVDLNISVAELATGVKKSGSKQTVLTSSSPLDENSFQQPEKVAPVS 318
+++LR+K+VNFG+ V L I+ L + GS TVLTSS+ +DENSF P KV PV+
Sbjct: 12 NSFLRVKIVNFGSDQVSLTITATGLQASINALGSNATVLTSSNVMDENSFSNPNKVVPVT 191
Query: 319 SPMANAGQQMGASVGPYSLTSFDLLLEPSK 408
S + NA +QM ++ +S +SFDL L S+
Sbjct: 192 SQLRNAAEQMQVTLPAHSFSSFDLALAQSQ 281
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 6,490,393
Number of Sequences: 8143
Number of extensions: 88875
Number of successful extensions: 1827
Number of sequences better than 1.0e-020: 3
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 169116378
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)