TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950089.2.2
(1044 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN818433.1|CN818433 HRO4460_F10_K20ZS5 Lib AA070E1X Aven... 348 1e-096
gb|CN819616.1|CN819616 HRO4402_B12_C24ZS5 Lib AA069E1X Aven... 304 2e-083
gb|CN821498.1|CN821498 HRO4426_A05_A10ZS5 Lib AA069E1X Aven... 304 2e-083
>gb|CN818433.1|CN818433 HRO4460_F10_K20ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4460_F10_K20, mRNA sequence
Length = 787
Score = 348 bits (754), Expect = 1e-096
Identities = 136/182 (74%), Positives = 150/182 (82%)
Frame = +2 / +1
Query: 137 KNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVLYSFITLFELTFAPIIEWLP 316
KNFD+LAGPL+SLAYPLYASVRAIETK+ VDDQQWLTYWVLYSFITLFELTFAPI+EWLP
Sbjct: 13 KNFDILAGPLVSLAYPLYASVRAIETKSQVDDQQWLTYWVLYSFITLFELTFAPILEWLP 192
Query: 317 FWSYAKLFFNCWLVLPWFNGAAYVYDHFVRPMFVNRQIVNIWYIPRNEKLGKSDDVLSAA 496
FW Y KLFFNCWLVLP FNGAAYVY+HFVRPMF+NRQIVNIWY+PR +K K DDVLSAA
Sbjct: 193 FWPYGKLFFNCWLVLPCFNGAAYVYEHFVRPMFLNRQIVNIWYVPRKDKSSKPDDVLSAA 372
Query: 497 ERYIEQNGPEAFEXXXXXXXXXXXXXXXXXXXLEDGEAENRAKAERESWGENPFYDKNYR 676
E+YIE NGPEAFE L++ +A+ KAERESWGENPFYDKNYR
Sbjct: 373 EKYIELNGPEAFEKLISKSTKPSNFRSKRLSVLQEAKADRAGKAERESWGENPFYDKNYR 552
Query: 677 Y* 682
+*
Sbjct: 553 H* 558
Score = 264 bits (572), Expect = 1e-071
Identities = 129/179 (72%), Positives = 135/179 (75%)
Frame = -1 / -3
Query: 672 *FLS*KGFSPHDSLSALARFSASPSSKFNRXXXXXXXXXXXXLMSFSNASGPFCSIYLSA 493
*FLS* GFSP DSLSAL SA S K + L+SFSNASGPF SIY SA
Sbjct: 548 *FLS*NGFSPQDSLSALPALSAFASCKTDSLLLLKFEGFVDLLISFSNASGPFSSIYFSA 369
Query: 492 ADRTSSDLPSFSFLGIYHMFTIWRFTNIGRTKWS*T*AAPLNQGKTNQQLKNSFAYDQNG 313
A+ TSS L SFLG Y MFTIWRF NIGRTK S*T*AAPL QGKT+QQLKN+F Q G
Sbjct: 368 AESTSSGLLDLSFLGTYQMFTIWRFKNIGRTKCS*T*AAPLKQGKTSQQLKNNFP*GQKG 189
Query: 312 SHSIIGAKVSSNKVINEYNTQ*VSHC*SSTGFFVSIALTEAYRG*ASDMSGPARTSKFL 136
SHS IGA VSSNKVINEYNTQ*VSHC*SST FVSIALTEAYRG*AS+ SGPAR SKFL
Sbjct: 188 SHSSIGANVSSNKVINEYNTQ*VSHC*SST*DFVSIALTEAYRG*ASETSGPARMSKFL 12
Score = 221 bits (477), Expect(2) = 8e-060
Identities = 94/137 (68%), Positives = 111/137 (81%)
Frame = -3 / -2
Query: 547 ADELLKCFWSVLFNISLCS*QNIIRFT*LLISWNIPYVHYLAVHKHWPHKMVVNIGSTIE 368
A+ LLKCFWS+ FNI LCS*+ IIRFT*L++SW++P V+YLA+ KHWPHKM+VNI STIE
Sbjct: 423 AN*LLKCFWSIQFNILLCS*EYIIRFT*LILSWDVPDVYYLAIQKHWPHKMLVNISSTIE 244
Query: 367 PRQDQPAVKEQLCI*PKWKPLDNWSKS*LKQSDK*VQHPVSEPLLIIYRIFCLYCSNRSI 188
R + PA++EQL I P+ KP WSK LKQSDK*VQHPVSEPLLIIY FC CS+R I
Sbjct: 243 AR*N*PAIEEQLSIGPERKPFKYWSKCELKQSDK*VQHPVSEPLLIIYLRFCFNCSHRGI 64
Query: 187 *RISK*YEWPGKDIEVL 137
*RISK WPG+D+EVL
Sbjct: 63 *RISKRN*WPGEDVEVL 13
Score = 202 bits (436), Expect = 7e-053
Identities = 95/156 (60%), Positives = 111/156 (71%)
Frame = +1 / +3
Query: 127 GAGQELRCPCRATHITCLSSICFC*SNRDKKSCR*SAVAHLLGVVLIYHFV*ANFCSNYR 306
G QELR P RAT CLSSIC C SN +K S R*SAVAHLLGVVLIYHFV*A+ CSN
Sbjct: 3 GTRQELRHPRRATSFACLSSICLCESN*NKISSR*SAVAHLLGVVLIYHFV*AHICSNT* 182
Query: 307 VASILVICKXXXXXXXXXXXXQWCCLCLRPFCAANVCEPPNSEHMVYSKK*EAR*I**CS 486
+AS L + K QWCCLCLR FCAANV E PNS+H+V KK +* **C+
Sbjct: 183 MASFLALWKVVLQLLASFTLLQWCCLCLRAFCAANVFESPNSKHLVRPKKG*VK*T**CT 362
Query: 487 VSCREIY*TKRTRSI*EAHQQVYEVFEVKEHKAVEL 594
+SCRE+Y*T+ TRSI*EA+ QVY+ F++ E +AV L
Sbjct: 363 LSCREVY*TEWTRSI*EAN*QVYKAFKL*EQEAVGL 470
Score = 182 bits (393), Expect = 6e-047
Identities = 89/138 (64%), Positives = 100/138 (72%)
Frame = -2 / -1
Query: 539 ASQMLLVRFVQYISLQLTEHHQIYLASHFLEYTICSLFGGSQTLAAQNGRKHRQHH*TKA 360
ASQMLLV VQY SLQL HHQ+YL FL T C LFG S+TLAAQN RKH+QHH*+K
Sbjct: 415 ASQMLLVHSVQYTSLQLRVHHQVYLTYPFLGRTRCLLFGDSKTLAAQNARKHKQHH*SKV 236
Query: 359 RPTSS*RTALHMTKMEATR*LEQKLAQTK**MSTTPSK*ATADHLQDFLSLLL*QKHIED 180
+ S+*RT H + EA + LEQ AQTK**MSTTPSK*ATADHL + L LL Q+HIED
Sbjct: 235 KLASN*RTTFHRARKEAIQVLEQM*AQTK**MSTTPSK*ATADHLLEILFQLLSQRHIED 56
Query: 179 KQVI*VARQGHRSSWPAP 126
KQ VAR+G RSS P
Sbjct: 55 KQAKLVARRGCRSSCLVP 2
Score = 113 bits (242), Expect(2) = 3e-029
Identities = 60/119 (50%), Positives = 70/119 (58%)
Frame = +3 / +2
Query: 327 MQSCSLTAGWSCLGSMVLPMFTTILCGQCL*TAK**TYGIFQEMRS*VNLMMFCQLQRDI 506
M+SCS AG L SMVL MFT+ILCGQC * AK**T G QE S VNLMM+ QLQR I
Sbjct: 203 MESCSSIAG*FYLASMVLLMFTSILCGQCF*IAK**TSGTSQERISQVNLMMYSQLQRSI 382
Query: 507 LNKTDQKHXXXXXXXXXXXXXQGTQSG*TWRMERLKIELKPRENRGAKIPSTTKTTDTK 683
LN DQKH G + + R ++L + +PREN G KI S + T TK
Sbjct: 383 LN*MDQKHLRS*LASLQSLQTLGARGCRSCRKQKLIEQARPRENPGVKIHSMIRITGTK 559
Score = 29.9 bits (59), Expect(2) = 3e-029
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +3 / +2
Query: 138 RTSMSLPGHSYHXXXXXXXXXEQ*RQKIL*MISSG 242
RTS S PGH + EQ +Q + *MISSG
Sbjct: 14 RTSTSSPGH*FRLLILYMPL*EQLKQNLK*MISSG 118
Score = 24.9 bits (48), Expect(2) = 8e-060
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -2 / -1
Query: 683 FSICSFCRRRDFRPTILSRL*LDFQPLHP 597
FS + R DF P ILSR L +Q L P
Sbjct: 559 FSAGNSYHRMDFHPRILSRPCLLYQLLLP 473
>gb|CN819616.1|CN819616 HRO4402_B12_C24ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4402_B12_C24, mRNA
sequence
Length = 769
Score = 304 bits (658), Expect = 2e-083
Identities = 117/149 (78%), Positives = 132/149 (88%)
Frame = +2 / +3
Query: 89 GAESKMGSGSFLKVLAKNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVLYSF 268
G MGSGSFLKVL N DVLAGP++SLAYPLYASVRAIETK+ +DDQQWLTYWVLYSF
Sbjct: 33 GGAGAMGSGSFLKVLVSNLDVLAGPIVSLAYPLYASVRAIETKSSIDDQQWLTYWVLYSF 212
Query: 269 ITLFELTFAPIIEWLPFWSYAKLFFNCWLVLPWFNGAAYVYDHFVRPMFVNRQIVNIWYI 448
ITLFELTFA +IEWLPFWSY KLFFNCWLVLP+FNGAA+VY+HFVRPM VN+Q+VNIWYI
Sbjct: 213 ITLFELTFAAVIEWLPFWSYGKLFFNCWLVLPYFNGAAHVYEHFVRPMIVNQQVVNIWYI 392
Query: 449 PRNEKLGKSDDVLSAAERYIEQNGPEAFE 535
P+ E K DDV+SAA++YIEQNG +AFE
Sbjct: 393 PKKEDSDKPDDVISAAQKYIEQNGSKAFE 479
Score = 230 bits (496), Expect(2) = 2e-062
Identities = 109/158 (68%), Positives = 117/158 (74%)
Frame = -1 / -1
Query: 534 SNASGPFCSIYLSAADRTSSDLPSFSFLGIYHMFTIWRFTNIGRTKWS*T*AAPLNQGKT 355
SNA PFCS+Y AA+ TSS L SFLGIY MFT FT IGRTK S*T AAPL GKT
Sbjct: 478 SNAFDPFCSMYFCAAEITSSGLSESSFLGIYQMFTTCWFTIIGRTKCS*TCAAPLK*GKT 299
Query: 354 NQQLKNSFAYDQNGSHSIIGAKVSSNKVINEYNTQ*VSHC*SSTGFFVSIALTEAYRG*A 175
NQQLKNSF DQ GSHSI AKVSSN+VINEYNTQ VSHC*SS FVSIA T+AYRG*A
Sbjct: 298 NQQLKNSFP*DQKGSHSITAAKVSSNRVINEYNTQYVSHC*SSIEDFVSIARTDAYRG*A 119
Query: 174 SDMSGPARTSKFLASTLRKDPDPILLSAPPPVEQNYRP 61
S+ GPARTS+ L STLRKDPDPI + P + RP
Sbjct: 118 SETMGPARTSRLLTSTLRKDPDPIAPAPPVSTKLRPRP 5
Score = 205 bits (442), Expect = 1e-053
Identities = 91/147 (61%), Positives = 108/147 (73%)
Frame = -3 / -3
Query: 544 DELLKCFWSVLFNISLCS*QNIIRFT*LLISWNIPYVHYLAVHKHWPHKMVVNIGSTIEP 365
D+ LKCF S+LF + LCS* I+ F *+ + NIP V+YL VH HWPHKM++N+ STIE
Sbjct: 488 DQSLKCF*SILFYVFLCS*NYIVGFI*IFLLGNIPDVYYLLVHNHWPHKMLINMRSTIEV 309
Query: 364 RQDQPAVKEQLCI*PKWKPLDNWSKS*LKQSDK*VQHPVSEPLLIIYRIFCLYCSNRSI* 185
QDQPA+++QL I P+ KP SK LKQSDK VQHPV EPLLIIYR FC YCSNR I*
Sbjct: 308 GQDQPAIEKQLSIRPEGKPFYYCSKGKLKQSDKRVQHPVCEPLLIIYRRFCFYCSNRRI* 129
Query: 184 RISK*YEWPGKDIEVLGQHLEERSGPH 104
RIS+* P ++IEV QHLEE S PH
Sbjct: 128 RISE*NYGPRENIEVADQHLEEGSRPH 48
Score = 171 bits (368), Expect = 2e-043
Identities = 84/143 (58%), Positives = 101/143 (70%)
Frame = -2 / -2
Query: 533 QMLLVRFVQYISLQLTEHHQIYLASHFLEYTICSLFGGSQTLAAQNGRKHRQHH*TKARP 354
QMLL+ FV IS+QL H ++YL EYT C L GSQ+LAAQN KH QHH*++ARP
Sbjct: 477 QMLLIHFVLCISVQLKLHRRVYLNLPSWEYTRCLLLAGSQSLAAQNAHKHAQHH*SRARP 298
Query: 353 TSS*RTALHMTKMEATR*LEQKLAQTK**MSTTPSK*ATADHLQDFLSLLL*QKHIEDKQ 174
TS+*+TA H T+ EA L+Q+ AQT+** STTPS *A ADHL L LLL Q HIEDK+
Sbjct: 297 TSN*KTAFHKTRREAILLLQQR*AQTE**TSTTPSM*AIADHL*KILFLLLEQTHIEDKR 118
Query: 173 VI*VARQGHRSSWPAP*GKIRTP 105
V A + HR PAP*G+I+TP
Sbjct: 117 VKLWAPREHRGC*PAP*GRIQTP 49
Score = 171 bits (367), Expect = 2e-043
Identities = 81/155 (52%), Positives = 100/155 (64%)
Frame = +1 / +2
Query: 88 RSREQDGVRIFPQGAGQELRCPCRATHITCLSSICFC*SNRDKKSCR*SAVAHLLGVVLI 267
R +GV I PQGAGQ+ RC A T LSSIC C SNR+K R*SA+AH+LGVVL+
Sbjct: 32 RGCRSNGVWILPQGAGQQPRCSRGAHSFTRLSSICVCSSNRNKIFYR*SAMAHILGVVLV 211
Query: 268 YHFV*ANFCSNYRVASILVICKXXXXXXXXXXXXQWCCLCLRPFCAANVCEPPNSEHMVY 447
YH V*A C + R+AS+LV+ K QWCC CL FCAAN CEP +S+H+VY
Sbjct: 212 YHSV*AYLCCSNRMASLLVLWKAVFQLLVGLALLQWCCACL*AFCAANDCEPASSKHLVY 391
Query: 448 SKK*EAR*I**CSVSCREIY*TKRTRSI*EAHQQV 552
S++ R* C+ SC EI+ TK +SI* + QQV
Sbjct: 392 SQEGRFR*TRRCNFSCTEIHRTKWIKSI*GSGQQV 496
Score = 82.2 bits (173), Expect(2) = 4e-026
Identities = 40/68 (58%), Positives = 46/68 (67%)
Frame = +3 / +1
Query: 327 MQSCSLTAGWSCLGSMVLPMFTTILCGQCL*TAK**TYGIFQEMRS*VNLMMFCQLQRDI 506
M+SC AGWSC SMVL MF +ILCGQ L*T+K**T GIF + +N M QL R+
Sbjct: 271 MESCFSIAGWSCPTSMVLRMFMSILCGQ*L*TSK**TSGIFPRRKIQINPTM*FQLHRNT 450
Query: 507 LNKTDQKH 530
NK DQKH
Sbjct: 451 *NKMDQKH 474
Score = 51.0 bits (105), Expect(2) = 4e-026
Identities = 23/47 (48%), Positives = 28/47 (59%)
Frame = +3 / +1
Query: 102 RWGPDLSSRCWPRTSMSLPGHSYHXXXXXXXXXEQ*RQKIL*MISSG 242
+WG D SSRCW TSM G +H EQ*+Q +L*MIS+G
Sbjct: 46 QWGLDPSSRCWSATSMFSRGP*FHSLILYMRLFEQ*KQNLL*MISNG 186
Score = 24.9 bits (48), Expect(2) = 2e-062
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -1 / -1
Query: 639 DSLSALARFSASPSSKFNR 583
+SLSALA S S SSK R
Sbjct: 571 NSLSALALLSTSTSSKIER 515
>gb|CN821498.1|CN821498 HRO4426_A05_A10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4426_A05_A10, mRNA
sequence
Length = 839
Score = 304 bits (658), Expect = 2e-083
Identities = 117/149 (78%), Positives = 132/149 (88%)
Frame = +2 / +3
Query: 89 GAESKMGSGSFLKVLAKNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVLYSF 268
G MGSGSFLKVL N DVLAGP++SLAYPLYASVRAIETK+ +DDQQWLTYWVLYSF
Sbjct: 27 GGAGAMGSGSFLKVLVSNLDVLAGPIVSLAYPLYASVRAIETKSSIDDQQWLTYWVLYSF 206
Query: 269 ITLFELTFAPIIEWLPFWSYAKLFFNCWLVLPWFNGAAYVYDHFVRPMFVNRQIVNIWYI 448
ITLFELTFA +IEWLPFWSY KLFFNCWLVLP+FNGAA+VY+HFVRPM VN+Q+VNIWYI
Sbjct: 207 ITLFELTFAAVIEWLPFWSYGKLFFNCWLVLPYFNGAAHVYEHFVRPMIVNQQVVNIWYI 386
Query: 449 PRNEKLGKSDDVLSAAERYIEQNGPEAFE 535
P+ E K DDV+SAA++YIEQNG +AFE
Sbjct: 387 PKKEDSDKPDDVISAAQKYIEQNGSKAFE 473
Score = 227 bits (491), Expect(2) = 9e-062
Identities = 107/149 (71%), Positives = 114/149 (76%)
Frame = -1 / -2
Query: 534 SNASGPFCSIYLSAADRTSSDLPSFSFLGIYHMFTIWRFTNIGRTKWS*T*AAPLNQGKT 355
SNA PFCS+Y AA+ TSS L SFLGIY MFT FT IGRTK S*T AAPL GKT
Sbjct: 472 SNAFDPFCSMYFCAAEITSSGLSESSFLGIYQMFTTCWFTIIGRTKCS*TCAAPLK*GKT 293
Query: 354 NQQLKNSFAYDQNGSHSIIGAKVSSNKVINEYNTQ*VSHC*SSTGFFVSIALTEAYRG*A 175
NQQLKNSF DQ GSHSI AKVSSN+VINEYNTQ VSHC*SS FVSIA T+AYRG*A
Sbjct: 292 NQQLKNSFP*DQKGSHSITAAKVSSNRVINEYNTQYVSHC*SSIEDFVSIARTDAYRG*A 113
Query: 174 SDMSGPARTSKFLASTLRKDPDPILLSAP 88
S+ GPARTS+ L STLRKDPDPI + P
Sbjct: 112 SETMGPARTSRLLTSTLRKDPDPIAPAPP 26
Score = 205 bits (442), Expect = 1e-053
Identities = 91/147 (61%), Positives = 108/147 (73%)
Frame = -3 / -1
Query: 544 DELLKCFWSVLFNISLCS*QNIIRFT*LLISWNIPYVHYLAVHKHWPHKMVVNIGSTIEP 365
D+ LKCF S+LF + LCS* I+ F *+ + NIP V+YL VH HWPHKM++N+ STIE
Sbjct: 482 DQSLKCF*SILFYVFLCS*NYIVGFI*IFLLGNIPDVYYLLVHNHWPHKMLINMRSTIEV 303
Query: 364 RQDQPAVKEQLCI*PKWKPLDNWSKS*LKQSDK*VQHPVSEPLLIIYRIFCLYCSNRSI* 185
QDQPA+++QL I P+ KP SK LKQSDK VQHPV EPLLIIYR FC YCSNR I*
Sbjct: 302 GQDQPAIEKQLSIRPEGKPFYYCSKGKLKQSDKRVQHPVCEPLLIIYRRFCFYCSNRRI* 123
Query: 184 RISK*YEWPGKDIEVLGQHLEERSGPH 104
RIS+* P ++IEV QHLEE S PH
Sbjct: 122 RISE*NYGPRENIEVADQHLEEGSRPH 42
Score = 171 bits (368), Expect = 2e-043
Identities = 84/143 (58%), Positives = 101/143 (70%)
Frame = -2 / -3
Query: 533 QMLLVRFVQYISLQLTEHHQIYLASHFLEYTICSLFGGSQTLAAQNGRKHRQHH*TKARP 354
QMLL+ FV IS+QL H ++YL EYT C L GSQ+LAAQN KH QHH*++ARP
Sbjct: 471 QMLLIHFVLCISVQLKLHRRVYLNLPSWEYTRCLLLAGSQSLAAQNAHKHAQHH*SRARP 292
Query: 353 TSS*RTALHMTKMEATR*LEQKLAQTK**MSTTPSK*ATADHLQDFLSLLL*QKHIEDKQ 174
TS+*+TA H T+ EA L+Q+ AQT+** STTPS *A ADHL L LLL Q HIEDK+
Sbjct: 291 TSN*KTAFHKTRREAILLLQQR*AQTE**TSTTPSM*AIADHL*KILFLLLEQTHIEDKR 112
Query: 173 VI*VARQGHRSSWPAP*GKIRTP 105
V A + HR PAP*G+I+TP
Sbjct: 111 VKLWAPREHRGC*PAP*GRIQTP 43
Score = 171 bits (367), Expect = 2e-043
Identities = 81/155 (52%), Positives = 100/155 (64%)
Frame = +1 / +2
Query: 88 RSREQDGVRIFPQGAGQELRCPCRATHITCLSSICFC*SNRDKKSCR*SAVAHLLGVVLI 267
R +GV I PQGAGQ+ RC A T LSSIC C SNR+K R*SA+AH+LGVVL+
Sbjct: 26 RGCRSNGVWILPQGAGQQPRCSRGAHSFTRLSSICVCSSNRNKIFYR*SAMAHILGVVLV 205
Query: 268 YHFV*ANFCSNYRVASILVICKXXXXXXXXXXXXQWCCLCLRPFCAANVCEPPNSEHMVY 447
YH V*A C + R+AS+LV+ K QWCC CL FCAAN CEP +S+H+VY
Sbjct: 206 YHSV*AYLCCSNRMASLLVLWKAVFQLLVGLALLQWCCACL*AFCAANDCEPASSKHLVY 385
Query: 448 SKK*EAR*I**CSVSCREIY*TKRTRSI*EAHQQV 552
S++ R* C+ SC EI+ TK +SI* + QQV
Sbjct: 386 SQEGRFR*TRRCNFSCTEIHRTKWIKSI*GSGQQV 490
Score = 82.2 bits (173), Expect(2) = 4e-026
Identities = 40/68 (58%), Positives = 46/68 (67%)
Frame = +3 / +1
Query: 327 MQSCSLTAGWSCLGSMVLPMFTTILCGQCL*TAK**TYGIFQEMRS*VNLMMFCQLQRDI 506
M+SC AGWSC SMVL MF +ILCGQ L*T+K**T GIF + +N M QL R+
Sbjct: 265 MESCFSIAGWSCPTSMVLRMFMSILCGQ*L*TSK**TSGIFPRRKIQINPTM*FQLHRNT 444
Query: 507 LNKTDQKH 530
NK DQKH
Sbjct: 445 *NKMDQKH 468
Score = 51.0 bits (105), Expect(2) = 4e-026
Identities = 23/47 (48%), Positives = 28/47 (59%)
Frame = +3 / +1
Query: 102 RWGPDLSSRCWPRTSMSLPGHSYHXXXXXXXXXEQ*RQKIL*MISSG 242
+WG D SSRCW TSM G +H EQ*+Q +L*MIS+G
Sbjct: 40 QWGLDPSSRCWSATSMFSRGP*FHSLILYMRLFEQ*KQNLL*MISNG 180
Score = 24.9 bits (48), Expect(2) = 9e-062
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -1 / -2
Query: 639 DSLSALARFSASPSSKFNR 583
+SLSALA S S SSK R
Sbjct: 565 NSLSALALLSTSTSSKIER 509
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 11,675,069
Number of Sequences: 8143
Number of extensions: 169194
Number of successful extensions: 940
Number of sequences better than 1.0e-020: 3
length of database: 1,567,487
effective HSP length: 44
effective length of database: 1,209,195
effective search space used: 366386085
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)