TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2485939.2.1
(530 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AJ133638.1|ASA133638 Avena sativa mRNA for myb protein 160 3e-040
>emb|AJ133638.1|ASA133638 Avena sativa mRNA for myb protein
Length = 2287
Score = 160 bits (345), Expect = 3e-040
Identities = 59/105 (56%), Positives = 77/105 (73%)
Frame = +3 / +2
Query: 129 PNYRKGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLQRNGKSCRLRWINYLRPGLKHGM 308
P +KG W+ ED L DY+ HG G W+A+ GL R GKSCRLRW N+LRP LK G
Sbjct: 377 PPLKKGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHLRPNLKKGA 556
Query: 309 FSPEEEETVMSLHATLGNKWSRIARHLPGRTDNEVKNYWNSYLKK 443
F+PEEE ++ LH+ +GNKW+R+A +LPGRTDNE+KNYWN+ +K+
Sbjct: 557 FTPEEERLIIQLHSKMGNKWARMAANLPGRTDNEIKNYWNTRIKR 691
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 4,876,247
Number of Sequences: 8143
Number of extensions: 62364
Number of successful extensions: 1713
Number of sequences better than 1.0e-020: 2
length of database: 1,567,487
effective HSP length: 42
effective length of database: 1,225,481
effective search space used: 164214454
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)