TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2478113.2.1
(796 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN819616.1|CN819616 HRO4402_B12_C24ZS5 Lib AA069E1X Aven... 138 8e-034
gb|CN821498.1|CN821498 HRO4426_A05_A10ZS5 Lib AA069E1X Aven... 138 8e-034
gb|CN818433.1|CN818433 HRO4460_F10_K20ZS5 Lib AA070E1X Aven... 134 1e-032
>gb|CN819616.1|CN819616 HRO4402_B12_C24ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4402_B12_C24, mRNA
sequence
Length = 769
Score = 138 bits (297), Expect = 8e-034
Identities = 53/98 (54%), Positives = 70/98 (71%)
Frame = -2 / +3
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L ++++L LAGP V L YPLYASVRA+E+ S +DD+QWL YW+LYSF+TL E+ ++
Sbjct: 66 LKVLVSNLDVLAGPIVSLAYPLYASVRAIETKSSIDDQQWLTYWVLYSFITLFELTFAAV 245
Query: 426 IYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQL 313
I W+P W KL F WLVLP F GAA +Y+ FVR +
Sbjct: 246 IEWLPFWSYGKLFFNCWLVLPYFNGAAHVYEHFVRPMI 359
>gb|CN821498.1|CN821498 HRO4426_A05_A10ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4426_A05_A10, mRNA
sequence
Length = 839
Score = 138 bits (297), Expect = 8e-034
Identities = 53/98 (54%), Positives = 70/98 (71%)
Frame = -2 / +3
Query: 606 LWTILTHLHSLAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESL 427
L ++++L LAGP V L YPLYASVRA+E+ S +DD+QWL YW+LYSF+TL E+ ++
Sbjct: 60 LKVLVSNLDVLAGPIVSLAYPLYASVRAIETKSSIDDQQWLTYWVLYSFITLFELTFAAV 239
Query: 426 IYWIPIWYELKLLFIAWLVLPNFRGAAFIYDKFVREQL 313
I W+P W KL F WLVLP F GAA +Y+ FVR +
Sbjct: 240 IEWLPFWSYGKLFFNCWLVLPYFNGAAHVYEHFVRPMI 353
>gb|CN818433.1|CN818433 HRO4460_F10_K20ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4460_F10_K20, mRNA sequence
Length = 787
Score = 134 bits (288), Expect = 1e-032
Identities = 50/85 (58%), Positives = 64/85 (75%)
Frame = -2 / +1
Query: 576 LAGPTVMLLYPLYASVRAMESPSKLDDEQWLAYWILYSFVTLMEMLLESLIYWIPIWYEL 397
LAGP V L YPLYASVRA+E+ S++DD+QWL YW+LYSF+TL E+ ++ W+P W
Sbjct: 28 LAGPLVSLAYPLYASVRAIETKSQVDDQQWLTYWVLYSFITLFELTFAPILEWLPFWPYG 207
Query: 396 KLLFIAWLVLPNFRGAAFIYDKFVR 322
KL F WLVLP F GAA++Y+ FVR
Sbjct: 208 KLFFNCWLVLPCFNGAAYVYEHFVR 282
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 8,562,788
Number of Sequences: 8143
Number of extensions: 127182
Number of successful extensions: 1150
Number of sequences better than 1.0e-020: 3
length of database: 1,567,487
effective HSP length: 43
effective length of database: 1,217,338
effective search space used: 269031698
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)