TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2455940.2.2
(1190 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AB076979.1| Avena sativa AsCCOAOMT mRNA for caffeoyl-Co... 270 3e-073
>dbj|AB076979.1| Avena sativa AsCCOAOMT mRNA for caffeoyl-CoA 3-O-methyltransferase,
partial cds
Length = 622
Score = 270 bits (584), Expect = 3e-073
Identities = 106/127 (83%), Positives = 116/127 (91%)
Frame = +3 / +3
Query: 501 LGLPCINKAGVGHKIDFREGPALPVLDDLVADKEQHGSFDFAFVDADKDNYLSYHERLLK 680
+GLPCI KAGV HKIDFREGPALPVLD L+ D+ HG+FDF FVDADKDNYL+YH+RL+K
Sbjct: 6 IGLPCIEKAGVAHKIDFREGPALPVLDALLEDEANHGTFDFVFVDADKDNYLNYHQRLMK 185
Query: 681 LVRPGGLIGYDNTLWNGSVVLPDDAPMRKYIRFYRDFVLALNSALAADDRVEICQLPVGD 860
LVR GGL+GYDNTLWNGSVVLP DAPMRKYIR+YRDFVL LN ALAADDRVEICQLPVGD
Sbjct: 186 LVRVGGLLGYDNTLWNGSVVLPADAPMRKYIRYYRDFVLELNKALAADDRVEICQLPVGD 365
Query: 861 GVTLCRR 881
G+TLCRR
Sbjct: 366 GITLCRR 386
Score = 59.3 bits (123), Expect(3) = 7e-028
Identities = 25/30 (83%), Positives = 26/30 (86%)
Frame = -2 / -1
Query: 772 MYLRMGASSGSTTEPFHSVLS*PMRPPGLT 683
MYLRMGAS+GSTTEPF SVLS P RPP LT
Sbjct: 277 MYLRMGASAGSTTEPFQSVLSYPSRPPTLT 188
Score = 55.1 bits (114), Expect(3) = 7e-028
Identities = 25/43 (58%), Positives = 29/43 (67%)
Frame = -2 / -1
Query: 631 TKAKSNDPCCSLSATRSSRTGSAGPSRKSILWPTPALLMQGRP 503
TK KS P + S++ +S TGSAGPSRKSIL TPA M G P
Sbjct: 136 TKTKSKVPWLASSSSSASSTGSAGPSRKSILCATPAFSMHGSP 8
Score = 50.1 bits (103), Expect(3) = 1e-021
Identities = 20/28 (71%), Positives = 24/28 (85%)
Frame = -1 / -3
Query: 761 HGRVVGEHDGAVPQRVVVADEAAGPHQL 678
HGRV GEHDGAVP+RVVV+ +AA P +L
Sbjct: 266 HGRVGGEHDGAVPERVVVS*QAADPDEL 183
Score = 48.7 bits (100), Expect(3) = 1e-021
Identities = 22/32 (68%), Positives = 26/32 (81%)
Frame = -1 / -3
Query: 608 VLLLVRHEVVQDGERGALAEVDLVAHAGLVDA 513
V+ LV + VQ G+RGALAEVDLV HAGL+DA
Sbjct: 113 VVGLVLEQRVQHGQRGALAEVDLVRHAGLLDA 18
Score = 42.8 bits (87), Expect(3) = 7e-028
Identities = 16/18 (88%), Positives = 16/18 (88%)
Frame = -2 / -1
Query: 889 HLTRRQSVTPSPTGSWQI 836
HL RRQSV PSPTGSWQI
Sbjct: 394 HLARRQSVMPSPTGSWQI 341
Score = 36.8 bits (74), Expect(3) = 1e-021
Identities = 17/19 (89%), Positives = 17/19 (89%)
Frame = -1 / -3
Query: 890 SLDAAAERDAVADGELADL 834
SL AAAE DAVADGELADL
Sbjct: 395 SLGAAAECDAVADGELADL 339
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 8,280,648
Number of Sequences: 8143
Number of extensions: 91209
Number of successful extensions: 795
Number of sequences better than 1.0e-020: 1
length of database: 1,567,487
effective HSP length: 44
effective length of database: 1,209,195
effective search space used: 425636640
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)